SMED30023566
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023566 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of SMED30023566 vs. TrEMBL
Match: A0A0V0J772 (Protein eva-1 homolog C OS=Schistocephalus solidus OX=70667 GN=EVA1C PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.812e-7 Identity = 55/200 (27.50%), Postives = 87/200 (43.50%), Query Frame = 1 Query: 259 SPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPG--YIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPL--NSPKQC----RPVDKTYHVISKCSYRDKCSVGPHEY-----TSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFE 819 +PI + + S + K + I + C SC I + + + T K + LVKY C P IK E +C ++YL++ C + + ++ A L +E + S CP+ PK +D + H+ C R CSV P + C HLRLTYAC + EN P+ P +TK ++ + Sbjct: 82 TPIASAPATSSHCMNLKDVTSPIKQLCEGKLSCSISPDQFTANESSCTHMK--RHLLVKYICEPSPQAIKKEIVCLDTYLELKCGGRHPKDVI---AVLKASLEANTQSDRCPVLPEMPKMSTVCPATIDVSPHLRGLCDRRRTCSVMPDPSMLPTNQPASCGKRHLRLTYACANPSIFENDTPAPADSPPRRTKHRQGQ 276
BLAST of SMED30023566 vs. TrEMBL
Match: A0A0X3Q1T3 (Protein eva-1 homolog C OS=Schistocephalus solidus OX=70667 GN=EVA1C PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.942e-7 Identity = 55/200 (27.50%), Postives = 87/200 (43.50%), Query Frame = 1 Query: 259 SPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPG--YIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPL--NSPKQC----RPVDKTYHVISKCSYRDKCSVGPHEY-----TSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFE 819 +PI + + S + K + I + C SC I + + + T K + LVKY C P IK E +C ++YL++ C + + ++ A L +E + S CP+ PK +D + H+ C R CSV P + C HLRLTYAC + EN P+ P +TK ++ + Sbjct: 50 TPIASAPATSSHCMNLKDVTSPIKQLCEGKLSCSISPDQFTANESSCTHMK--RHLLVKYICEPSPQAIKKEIVCLDTYLELKCGGRHPKDVI---AVLKASLEANTQSDRCPVLPEMPKMSTVCPATIDVSPHLRGLCDRRRTCSVMPDPSMLPTNQPASCGKRHLRLTYACANPSIFENDTPAPADSPPRRTKHRQGQ 244
BLAST of SMED30023566 vs. TrEMBL
Match: A0A0X3NXI2 (Protein eva-1 homolog C OS=Schistocephalus solidus OX=70667 GN=EVA1C PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 2.099e-7 Identity = 55/200 (27.50%), Postives = 87/200 (43.50%), Query Frame = 1 Query: 259 SPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPG--YIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPL--NSPKQC----RPVDKTYHVISKCSYRDKCSVGPHEY-----TSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFE 819 +PI + + S + K + I + C SC I + + + T K + LVKY C P IK E +C ++YL++ C + + ++ A L +E + S CP+ PK +D + H+ C R CSV P + C HLRLTYAC + EN P+ P +TK ++ + Sbjct: 99 TPIASAPATSSHCMNLKDVTSPIKQLCEGKLSCSISPDQFTANESSCTHMK--RHLLVKYICEPSPQAIKKEIVCLDTYLELKCGGRHPKDVI---AVLKASLEANTQSDRCPVLPEMPKMSTVCPATIDVSPHLRGLCDRRRTCSVMPDPSMLPTNQPASCGKRHLRLTYACANPSIFENDTPAPADSPPRRTKHRQGQ 293
BLAST of SMED30023566 vs. TrEMBL
Match: A0A068WKG0 (Pfam-B_8122 and DUF4381 domain containing protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000591200 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.723e-6 Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 421 DFLVKYRCVPG--YIKNENICTNSYLDIDCFD-KLKEKLVIHKATLY--------PEIEKSEDSIG-CPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYT-----SSMCKNMHLRLTYACVPEDVLEN-------FMNEPSKEK-PIKTKTKR 813 + LV YRC PG +++ IC ++Y++I C ++E +V+ A L P+I + S G CP +D T ++ C CSV P S+C HL L+YACVP VLE+ ++ PSK + P + K +R Sbjct: 145 EMLVAYRCEPGPQMVQSLAICQDTYVEIKCTTYGVEESIVVLDAQLVMQVDTKVCPKIVEPPSSAGVCPSR-------LDVTAGLMGMCGRERTCSVMPDASMLPPGYPSLCARRHLELSYACVPPSVLESAWKVMGKHLSRPSKPRQPYQKKNRR 293
BLAST of SMED30023566 vs. TrEMBL
Match: A0A0S4MML8 (Uncharacterized protein OS=Echinococcus multilocularis OX=6211 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.308e-6 Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 421 DFLVKYRCVPG--YIKNENICTNSYLDIDCFD-KLKEKLVIHKATLY--------PEIEKSEDSIG-CPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYT-----SSMCKNMHLRLTYACVPEDVLEN-------FMNEPSK-EKPIKTKTKR 813 + LV YRC PG +++ IC ++Y++I C ++E +V+ A L P+I + S G CP +D T ++ C CSV P S+C HL L+YACVP VLE+ ++ PSK +P + K +R Sbjct: 145 EMLVAYRCEPGPQMVQSLAICQDTYVEIKCTTYGVEESIVVLDAQLVMQVDTKVCPKIVEPPSSAGVCPSR-------LDVTEGLMGMCGRERTCSVMPDASMLPLGYPSLCARRHLELSYACVPPSVLESAWKVMGKHLSRPSKPRQPYQKKNRR 293
BLAST of SMED30023566 vs. Planmine SMEST
Match: SMESG000069363.1 (SMESG000069363.1) HSP 1 Score: 843.573 bits (2178), Expect = 0.000e+0 Identity = 441/442 (99.77%), Postives = 441/442 (99.77%), Query Frame = 1 Query: 61 MKIWIFIFLSLQNFQAYLSTSILMKDFKLFSAEICKIGCTTISCHSNTLISIDSITSIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMXXXXXXXXXXXXXXXXCCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLAXXXXXXXXXXXXXHGTPRGTKSSGIFSMTDMSFENTH 1386 MKIWIFIFLSLQNFQAYLSTSILMKDFKLFSAEICKIGCTTISCHSNTLISIDSI SIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMSVSIVVISSVLISVLICCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLASSSNLTSSTINSSHGTPRGTKSSGIFSMTDMSFENTH Sbjct: 1 MKIWIFIFLSLQNFQAYLSTSILMKDFKLFSAEICKIGCTTISCHSNTLISIDSINSIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMSVSIVVISSVLISVLICCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLASSSNLTSSTINSSHGTPRGTKSSGIFSMTDMSFENTH 442
BLAST of SMED30023566 vs. Planmine SMEST
Match: SMESG000069363.1 (SMESG000069363.1) HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0 Identity = 418/419 (99.76%), Postives = 418/419 (99.76%), Query Frame = 1 Query: 130 MKDFKLFSAEICKIGCTTISCHSNTLISIDSITSIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMXXXXXXXXXXXXXXXXCCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLAXXXXXXXXXXXXXHGTPRGTKSSGIFSMTDMSFENTH 1386 MKDFKLFSAEICKIGCTTISCHSNTLISIDSI SIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMSVSIVVISSVLISVLICCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLASSSNLTSSTINSSHGTPRGTKSSGIFSMTDMSFENTH Sbjct: 1 MKDFKLFSAEICKIGCTTISCHSNTLISIDSINSIQASDNSKCSPINHSYSLSPYNCYFKYFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQCRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPIKTKTKRFEVENDTNSWFKKHKWTILGMSVSIVVISSVLISVLICCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPDIYNSNSDTEESNLRSMYPANIHSTMSYNSQFCNAPPLINTCQYFSPLVKVGHINMLEMPAIQLASSSNLTSSTINSSHGTPRGTKSSGIFSMTDMSFENTH 419
BLAST of SMED30023566 vs. Planmine SMEST
Match: SMESG000008954.1 (SMESG000008954.1) HSP 1 Score: 96.2857 bits (238), Expect = 3.196e-21 Identity = 93/352 (26.42%), Postives = 159/352 (45.17%), Query Frame = 1 Query: 121 SILMKDFKLFSAEICKIGCTTISCHSNTLISIDSIT-SIQASDNSKC-SPINHSYSL----SPYNCYFK---YFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQ--CRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPI---KTKTKRFE-------VENDTNSWFKKHK----------WTILGMXXXXXXXXXXXXXXXXCCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPD 1083 SI + FK F+ IC C I C NT++ I + S A + C SP + + SL P NC + ++ +I C+N C++C + T C + +V Y C+ + ENI NSY ++ C L +++I+KA+L +K+ ++ N KQ C VD + ++ CS++ +C GP++ S C+ L L YACV E V++ E + +P+ T RF + +++ KK K W I G SV +V++ ++ +T ++ +LF+K+ F PPP+ I+K+ ++ + PD Sbjct: 5 SISQEMFKEFNKSICGRQCEKIYCPFNTVMKIQLVELSFGAKNEPNCMSPDSPNESLIELEDPDNCKARLEIHWRQFIHSECSNKTKCKVC--ETTETKTEQKGCYQIANIIVTYLCISNDVVEENITANSYYELTCEHLLSHRIIIYKASLALH-KKNPSNMKVFSNREKQKDCSQVDVSANISETCSFKRRCQAGPNQLFSGDCEKKQLLLQYACVHESVIK---KERQRNRPLFIHFTNPTRFHNNDIPILSSTEISTYLKKPKSDETIEDKLIWIITGSSVLVVMVMIFTAISWSYGMRKCRTRQT--------SLFHKIKDANFCPPPTPINKIQIDLPSRESIFPD 342
BLAST of SMED30023566 vs. Planmine SMEST
Match: SMESG000008954.1 (SMESG000008954.1) HSP 1 Score: 95.5153 bits (236), Expect = 7.293e-21 Identity = 91/346 (26.30%), Postives = 156/346 (45.09%), Query Frame = 1 Query: 139 FKLFSAEICKIGCTTISCHSNTLISIDSI-TSIQASDNSKC-SPINHSYSL----SPYNCYFK---YFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQ--CRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPI---KTKTKRFE-------VENDTNSWFKKHK----------WTILGMXXXXXXXXXXXXXXXXCCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPD 1083 FK F+ IC C I C NT++ I + S A + C SP + + SL P NC + ++ +I C+N C++C + T C + +V Y C+ + ENI NSY ++ C L +++I+KA+L +K+ ++ N KQ C VD + ++ CS++ +C GP++ S C+ L L YACV E V++ E + +P+ T RF + +++ KK K W I G SV +V++ ++ +T ++ +LF+K+ F PPP+ I+K+ ++ + PD Sbjct: 23 FKEFNKSICGRQCEKIYCPFNTVMKIQLVELSFGAKNEPNCMSPDSPNESLIELEDPDNCKARLEIHWRQFIHSECSNKTKCKVC--ETTETKTEQKGCYQIANIIVTYLCISNDVVEENITANSYYELTCEHLLSHRIIIYKASLALH-KKNPSNMKVFSNREKQKDCSQVDVSANISETCSFKRRCQAGPNQLFSGDCEKKQLLLQYACVHESVIK---KERQRNRPLFIHFTNPTRFHNNDIPILSSTEISTYLKKPKSDETIEDKLIWIITGSSVLVVMVMIFTAISWSYGMRKCRTRQT--------SLFHKIKDANFCPPPTPINKIQIDLPSRESIFPD 354
BLAST of SMED30023566 vs. Planmine SMEST
Match: SMESG000008954.1 (SMESG000008954.1) HSP 1 Score: 95.5153 bits (236), Expect = 7.293e-21 Identity = 91/346 (26.30%), Postives = 156/346 (45.09%), Query Frame = 1 Query: 139 FKLFSAEICKIGCTTISCHSNTLISIDSI-TSIQASDNSKC-SPINHSYSL----SPYNCYFK---YFENYILKTCANSFSCRICMNDIESVHTPNTQCKSEQDFLVKYRCVPGYIKNENICTNSYLDIDCFDKLKEKLVIHKATLYPEIEKSEDSIGCPLNSPKQ--CRPVDKTYHVISKCSYRDKCSVGPHEYTSSMCKNMHLRLTYACVPEDVLENFMNEPSKEKPI---KTKTKRFE-------VENDTNSWFKKHK----------WTILGMXXXXXXXXXXXXXXXXCCNKRNQTNRSCDINTPKDNLFNKLGQQKFTPPPSSIDKVNVEFENATLAPPD 1083 FK F+ IC C I C NT++ I + S A + C SP + + SL P NC + ++ +I C+N C++C + T C + +V Y C+ + ENI NSY ++ C L +++I+KA+L +K+ ++ N KQ C VD + ++ CS++ +C GP++ S C+ L L YACV E V++ E + +P+ T RF + +++ KK K W I G SV +V++ ++ +T ++ +LF+K+ F PPP+ I+K+ ++ + PD Sbjct: 23 FKEFNKSICGRQCEKIYCPFNTVMKIQLVELSFGAKNEPNCMSPDSPNESLIELEDPDNCKARLEIHWRQFIHSECSNKTKCKVC--ETTETKTEQKGCYQIANIIVTYLCISNDVVEENITANSYYELTCEHLLSHRIIIYKASLALH-KKNPSNMKVFSNREKQKDCSQVDVSANISETCSFKRRCQAGPNQLFSGDCEKKQLLLQYACVHESVIK---KERQRNRPLFIHFTNPTRFHNNDIPILSSTEISTYLKKPKSDETIEDKLIWIITGSSVLVVMVMIFTAISWSYGMRKCRTRQT--------SLFHKIKDANFCPPPTPINKIQIDLPSRESIFPD 354 The following BLAST results are available for this feature:
BLAST of SMED30023566 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30023566 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30023566 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30023566 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30023566 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30023566 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023566 ID=SMED30023566|Name=SMED30023566|organism=Schmidtea mediterranea sexual|type=transcript|length=1541bpback to top protein sequence of SMED30023566-orf-1 >SMED30023566-orf-1 ID=SMED30023566-orf-1|Name=SMED30023566-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=445bp MKIWIFIFLSLQNFQAYLSTSILMKDFKLFSAEICKIGCTTISCHSNTLIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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