Protein LSM14 homolog B-A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023487 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Match: LSM14A (LSM14A mRNA processing body assembly factor [Source:HGNC Symbol;Acc:HGNC:24489]) HSP 1 Score: 134.806 bits (338), Expect = 6.296e-37 Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETS 393 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV++ S Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSRWS 99
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Match: LSM14A (LSM14A mRNA processing body assembly factor [Source:HGNC Symbol;Acc:HGNC:24489]) HSP 1 Score: 134.806 bits (338), Expect = 6.296e-37 Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETS 393 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV++ S Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSRWS 99
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Match: LSM14B (LSM family member 14B [Source:HGNC Symbol;Acc:HGNC:15887]) HSP 1 Score: 134.806 bits (338), Expect = 2.342e-35 Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + ++G KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+EIYEYIIFRGSDI+D+ VCEP K L +D AIV++ Sbjct: 7 TPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQS 98
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Match: LSM14A (LSM14A mRNA processing body assembly factor [Source:HGNC Symbol;Acc:HGNC:24489]) HSP 1 Score: 137.117 bits (344), Expect = 2.980e-35 Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 2 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 90
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Match: LSM14A (LSM14A mRNA processing body assembly factor [Source:HGNC Symbol;Acc:HGNC:24489]) HSP 1 Score: 136.732 bits (343), Expect = 7.250e-35 Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 2 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 90
BLAST of Protein LSM14 homolog B-A vs. Ensembl Celegans
Match: car-1 (Cytokinesis, Apoptosis, RNA-associated [Source:UniProtKB/TrEMBL;Acc:Q9XW17]) HSP 1 Score: 106.686 bits (265), Expect = 5.949e-25 Identity = 51/94 (54.26%), Postives = 68/94 (72.34%), Query Frame = 1 Query: 106 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSL---LSEDSAIV 378 + +IG KISLISK IRYEGILYT+D +ST+AL+KV+SFGTE R + RD++YEYIIF+ SDI+DL VC+ K +++ L D AI+ Sbjct: 4 QTPYIGSKISLISKLDIRYEGILYTVDTNDSTIALAKVRSFGTEKRPTANPVAARDDVYEYIIFKASDIKDLIVCDTPKMANIGGGLPYDPAII 97 HSP 2 Score: 54.299 bits (129), Expect = 1.232e-7 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 1084 FKEDYDFETANA----IIAKELAALHVSQXXXXXXXXXXXXXXGQLSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFG 1356 F+ D+DFE AN ++ L L++ + + ++ + +A +YDK SFFDNIS E +++A GK+ R + K+ER+ N ETFG Sbjct: 186 FESDFDFEKANEKFQEVLVDNLEKLNIEDKAEP-----------EVEEKKDAAFYDKKTSFFDNISCESLEKAEGKTGRP-DWKKERETNQETFG 268
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Match: tral (gene:FBgn0041775 transcript:FBtr0332638) HSP 1 Score: 105.916 bits (263), Expect = 1.786e-23 Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 118 IGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV-----MSSGM 435 +G KISLISKA IRYEG LYT+DP+E T+ALS V+SFGTEDR I P+ +IY+YI+FRGSDI+D+ V + + D AI++A+ N PP + M SGM Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV--NNHTLPHHNDPAIMQAQLQ---NGPPQMPQHFPMPSGM 113
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Match: tral (gene:FBgn0041775 transcript:FBtr0332640) HSP 1 Score: 105.916 bits (263), Expect = 1.856e-23 Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 118 IGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV-----MSSGM 435 +G KISLISKA IRYEG LYT+DP+E T+ALS V+SFGTEDR I P+ +IY+YI+FRGSDI+D+ V + + D AI++A+ N PP + M SGM Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV--NNHTLPHHNDPAIMQAQLQ---NGPPQMPQHFPMPSGM 113
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Match: tral (gene:FBgn0041775 transcript:FBtr0332639) HSP 1 Score: 105.916 bits (263), Expect = 2.048e-23 Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 118 IGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV-----MSSGM 435 +G KISLISKA IRYEG LYT+DP+E T+ALS V+SFGTEDR I P+ +IY+YI+FRGSDI+D+ V + + D AI++A+ N PP + M SGM Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV--NNHTLPHHNDPAIMQAQLQ---NGPPQMPQHFPMPSGM 113
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Match: tral (gene:FBgn0041775 transcript:FBtr0332635) HSP 1 Score: 105.916 bits (263), Expect = 2.060e-23 Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 118 IGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV-----MSSGM 435 +G KISLISKA IRYEG LYT+DP+E T+ALS V+SFGTEDR I P+ +IY+YI+FRGSDI+D+ V + + D AI++A+ N PP + M SGM Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV--NNHTLPHHNDPAIMQAQLQ---NGPPQMPQHFPMPSGM 113
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Match: tral (gene:FBgn0041775 transcript:FBtr0075959) HSP 1 Score: 105.916 bits (263), Expect = 2.060e-23 Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 118 IGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV-----MSSGM 435 +G KISLISKA IRYEG LYT+DP+E T+ALS V+SFGTEDR I P+ +IY+YI+FRGSDI+D+ V + + D AI++A+ N PP + M SGM Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV--NNHTLPHHNDPAIMQAQLQ---NGPPQMPQHFPMPSGM 113
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Match: lsm14aa (LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]) HSP 1 Score: 136.732 bits (343), Expect = 7.935e-36 Identity = 69/108 (63.89%), Postives = 79/108 (73.15%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSG 432 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR I PRDE +EYIIFRGSDI+DL VCEP K + L +D AIV++ S PP SG Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKPTCSLPQDPAIVQSSLG-SSTAPPSSFQSG 111
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Match: lsm14ab (LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]) HSP 1 Score: 139.428 bits (350), Expect = 5.182e-35 Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAE-TSISGNLPPGVMS 426 + +IG KISLISKA IRYEG+LYTID STVAL+KVKSFGTEDR DR IPPRD+++EYIIFRGSDI+DL VCEP K + L +D AIV++ S +G P S Sbjct: 5 TPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPIPPRDDVFEYIIFRGSDIKDLTVCEPPKPTCNLPQDPAIVQSSLASTAGPTAPSFQS 111
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Match: lsm14ab (LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]) HSP 1 Score: 139.043 bits (349), Expect = 5.598e-35 Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAE-TSISGNLPPGVMS 426 + +IG KISLISKA IRYEG+LYTID STVAL+KVKSFGTEDR DR IPPRD+++EYIIFRGSDI+DL VCEP K + L +D AIV++ S +G P S Sbjct: 5 TPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPIPPRDDVFEYIIFRGSDIKDLTVCEPPKPTCNLPQDPAIVQSSLASTAGPTAPSFQS 111
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Match: lsm14aa (LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]) HSP 1 Score: 136.732 bits (343), Expect = 3.386e-34 Identity = 69/108 (63.89%), Postives = 79/108 (73.15%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSG 432 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR I PRDE +EYIIFRGSDI+DL VCEP K + L +D AIV++ S PP SG Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKPTCSLPQDPAIVQSSLG-SSTAPPSSFQSG 111
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Match: lsm14aa (LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]) HSP 1 Score: 121.324 bits (303), Expect = 1.716e-32 Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKES 348 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR I PRDE +EYIIFRGSDI+DL VCEP K + Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKPT 84
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Match: rps15 (ribosomal protein S15 [Source:Xenbase;Acc:XB-GENE-5832673]) HSP 1 Score: 138.658 bits (348), Expect = 6.714e-35 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 95
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Match: lsm14b (LSM family member 14B [Source:NCBI gene;Acc:595068]) HSP 1 Score: 137.502 bits (345), Expect = 9.051e-35 Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+E+YEYIIFRGSDI+D+ VCEP K S L +D AIV++ Sbjct: 5 TPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSDIKDITVCEPPKASHALPQDPAIVQS 96
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Match: lsm14b (LSM family member 14B [Source:NCBI gene;Acc:595068]) HSP 1 Score: 135.576 bits (340), Expect = 1.486e-34 Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+E+YEYIIFRGSDI+D+ VCEP K S L +D AIV++ Sbjct: 5 TPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSDIKDITVCEPPKASHALPQDPAIVQS 96
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Match: rps15 (ribosomal protein S15 [Source:Xenbase;Acc:XB-GENE-5832673]) HSP 1 Score: 138.272 bits (347), Expect = 2.095e-34 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 95
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Match: rps15 (ribosomal protein S15 [Source:Xenbase;Acc:XB-GENE-5832673]) HSP 1 Score: 137.887 bits (346), Expect = 3.098e-34 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 95
BLAST of Protein LSM14 homolog B-A vs. Ensembl Mouse
Match: Lsm14a (LSM14A mRNA processing body assembly factor [Source:MGI Symbol;Acc:MGI:1914320]) HSP 1 Score: 135.191 bits (339), Expect = 4.663e-35 Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAI 375 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AI Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAI 93
BLAST of Protein LSM14 homolog B-A vs. Ensembl Mouse
Match: Lsm14b (LSM family member 14B [Source:MGI Symbol;Acc:MGI:3040677]) HSP 1 Score: 137.117 bits (344), Expect = 9.064e-35 Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + ++G KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+EIYEYIIFRGSDI+D+ VCEP K L +D AIV++ Sbjct: 7 TPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQS 98 HSP 2 Score: 49.6766 bits (117), Expect = 9.219e-6 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 1231 YYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMA 1362 YYDK+KSFFDNISSE+ S R+ EERK+N ETFG++ Sbjct: 311 YYDKSKSFFDNISSELK-----TSSRRTTWAEERKLNTETFGVS 349
BLAST of Protein LSM14 homolog B-A vs. Ensembl Mouse
Match: Lsm14a (LSM14A mRNA processing body assembly factor [Source:MGI Symbol;Acc:MGI:1914320]) HSP 1 Score: 135.961 bits (341), Expect = 6.902e-34 Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAI 375 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AI Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAI 93
BLAST of Protein LSM14 homolog B-A vs. Ensembl Mouse
Match: Lsm14a (LSM14A mRNA processing body assembly factor [Source:MGI Symbol;Acc:MGI:1914320]) HSP 1 Score: 88.1965 bits (217), Expect = 9.083e-20 Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 214 KVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAI 375 KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AI Sbjct: 4 KVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAI 57
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Match: sp|Q498K9|L14BB_XENLA (Protein LSM14 homolog B-B OS=Xenopus laevis OX=8355 GN=lsm14b-b PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 7.151e-35 Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGV 420 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+E+YEYIIFRGSDI+D+ VCEP K S LS+D AIV++ + + P V Sbjct: 5 TPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSDIKDITVCEPPKASHALSQDPAIVQSSLGSAASYQPSV 108
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Match: sp|Q566L7|LS14B_XENTR (Protein LSM14 homolog B OS=Xenopus tropicalis OX=8364 GN=lsm14b PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.169e-34 Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+E+YEYIIFRGSDI+D+ VCEP K S L +D AIV++ Sbjct: 5 TPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSDIKDITVCEPPKASHALPQDPAIVQS 96
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Match: sp|Q68FI1|L14BA_XENLA (Protein LSM14 homolog B-A OS=Xenopus laevis OX=8355 GN=lsm14b-a PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.280e-34 Identity = 64/92 (69.57%), Postives = 75/92 (81.52%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR PPR+E+YEYIIFRGSDI+D+ VCEP K S L +D AIV++ Sbjct: 5 TPYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYIIFRGSDIKDITVCEPPKASHALPQDPAIVQS 96
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Match: sp|Q6NVR8|LS14A_XENTR (Protein LSM14 homolog A OS=Xenopus tropicalis OX=8364 GN=lsm14a PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 7.008e-34 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 95
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Match: sp|Q5R4R4|LS14A_PONAB (Protein LSM14 homolog A OS=Pongo abelii OX=9601 GN=LSM14A PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 7.271e-34 Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ 95
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Match: A0A2T7NGN1 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_18470 PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.137e-35 Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSL--LSEDSAIVRAETSISGNLPPGVMSSGM 435 ++G KISLISKA IRYEGILYTIDP ESTVAL+KV+SFGTEDR DR +PPRDEI+EYIIFRGSDI+DL+VCEP K+ + L +D AIV++ G PP +S M Sbjct: 7 YLGSKISLISKAEIRYEGILYTIDPNESTVALAKVRSFGTEDRPTDRPVPPRDEIFEYIIFRGSDIKDLHVCEPPKQQPMGGLPQDPAIVKSSQQSGG--PPSFQTSSM 113
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Match: A0A4W5LII5 (LSM14 domain-containing protein OS=Hucho hucho OX=62062 PE=4 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 8.196e-35 Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDEI+EYIIFRGSDI+DL VCEP K + L +D AIV+A Sbjct: 43 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYIIFRGSDIKDLTVCEPPKPTCSLPQDPAIVQA 134
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Match: A0A3Q2DFP5 (LSM14A mRNA processing body assembly factor b OS=Cyprinodon variegatus OX=28743 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 8.301e-35 Identity = 78/153 (50.98%), Postives = 97/153 (63.40%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAET-SISGNLPPGVMSSGMHHIDNAWPSNNRMQTSEKPIMINNSKSVANSIEAQQNSTAQST 564 + +IG KISLISKA IRYEG+LYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K +S L +D AIV++ S S P +G + + P Q PI S Q++S A+S+ Sbjct: 6 TPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKATSTLPQDPAIVQSSIGSTSAGAAPSFQGAGPYAPFSRAPVPPYSQFGGTPIGSQQFGSAGGRTSPQRDSLAKSS 158
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Match: A0A3B3U3G2 (LSM14 domain-containing protein OS=Poecilia latipinna OX=48699 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 1.605e-34 Identity = 74/131 (56.49%), Postives = 92/131 (70.23%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSIS-GNLPPGVMSSGMHHIDNAWPSNNRMQTSEKPIM 498 + ++G KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRD+I+EYIIFRGSDI+DL VCEP K + L +D AIV+ +S + P SSG + + N P+ Q S P++ Sbjct: 5 TPYLGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDDIFEYIIFRGSDIKDLTVCEPPKPTCSLPQDPAIVQVFLFLSAASAPTPFQSSGSYGLFNRAPAPAYNQFSTSPLV 135
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Match: A0A3Q3E3R7 (LSM14A mRNA processing body assembly factor b OS=Labrus bergylta OX=56723 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.657e-34 Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPP 414 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPRDE++EYIIFRGSDI+DL VCEP K +S L +D AIV++ S + PP Sbjct: 6 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKATSTLPQDPAIVQSSLGTSNSAPP 107
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Match: lsm14ab (LSM14A mRNA processing body assembly factor [Source:NCBI gene;Acc:103042286]) HSP 1 Score: 135.576 bits (340), Expect = 7.527e-34 Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPP 414 + +IG KISLISKA IRYEG+LYTID STVAL+KVKSFGTEDR DR + PRD+++EYIIFRGSDI+DL VCEP K + L +D AIV ++S+ + PP Sbjct: 5 TPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPVAPRDDVFEYIIFRGSDIKDLTVCEPPKPNCSLPQDPAIV--QSSLGSSAPP 104
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Match: lsm14ab (LSM14A mRNA processing body assembly factor [Source:NCBI gene;Acc:103042286]) HSP 1 Score: 135.961 bits (341), Expect = 8.793e-34 Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPP 414 + +IG KISLISKA IRYEG+LYTID STVAL+KVKSFGTEDR DR + PRD+++EYIIFRGSDI+DL VCEP K + L +D AIV ++S+ + PP Sbjct: 5 TPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPVAPRDDVFEYIIFRGSDIKDLTVCEPPKPNCSLPQDPAIV--QSSLGSSAPP 104
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Match: lsm14ab (LSM14A mRNA processing body assembly factor [Source:NCBI gene;Acc:103042286]) HSP 1 Score: 135.576 bits (340), Expect = 1.249e-33 Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPP 414 +IG KISLISKA IRYEG+LYTID STVAL+KVKSFGTEDR DR + PRD+++EYIIFRGSDI+DL VCEP K + L +D AIV ++S+ + PP Sbjct: 7 YIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSFGTEDRPTDRPVAPRDDVFEYIIFRGSDIKDLTVCEPPKPNCSLPQDPAIV--QSSLGSSAPP 104
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Match: lsm14aa (protein LSM14 homolog A-like [Source:NCBI gene;Acc:103031607]) HSP 1 Score: 130.568 bits (327), Expect = 4.180e-32 Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR I PRDE YEYIIFRGSDI+DL VCEP K + L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPILPRDETYEYIIFRGSDIKDLTVCEPPKPT--LPQDPAIVQ 93
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Match: lsm14aa (protein LSM14 homolog A-like [Source:NCBI gene;Acc:103031607]) HSP 1 Score: 129.798 bits (325), Expect = 9.399e-32 Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVR 381 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR I PRDE YEYIIFRGSDI+DL VCEP K + L +D AIV+ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPILPRDETYEYIIFRGSDIKDLTVCEPPKPT--LPQDPAIVQ 93
BLAST of Protein LSM14 homolog B-A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005960.1 (pep scaffold:Pmarinus_7.0:GL480662:10110:19118:-1 gene:ENSPMAG00000005377.1 transcript:ENSPMAT00000005960.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 121.709 bits (304), Expect = 9.969e-30 Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR +R + PRDEI+EYI+FRGSDI+D+ V EP K +D AIV++ Sbjct: 5 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTERPVAPRDEIFEYIVFRGSDIKDITVREPPKPQR-TPQDPAIVQS 95 HSP 2 Score: 50.0618 bits (118), Expect = 1.261e-6 Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 1084 FKEDYDFETANAIIAKE-LAALHVSQXXXXXXXXXXXXXXGQ--------LSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMA 1362 F+ D+DFE+ANA KE L + K + +G+ S ++ YYDKTKSFFDNIS E R R+ EER++NVETFG++ Sbjct: 301 FEGDFDFESANAQFNKEELEKEFQDKLKLKDDRGGEKVVNGEDKESGAETQSHEDDSAYYDKTKSFFDNISRESDPRE-----RRSTWAEERRMNVETFGVS 397
BLAST of Protein LSM14 homolog B-A vs. Ensembl Yeast
Match: SCD6 (Repressor of translation initiation; binds eIF4G through its RGG domain and inhibits recruitment of the preinitiation complex; also contains an Lsm domain; may have a role in RNA processing; overproduction suppresses null mutation in clathrin heavy chain gene CHC1; forms cytoplasmic foci upon DNA replication stress [Source:SGD;Acc:S000006333]) HSP 1 Score: 62.003 bits (149), Expect = 7.724e-11 Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 Query: 106 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRK--MDRVIPPRDEIYEYIIFRGSDIQDLNVCE 333 MS +IG ISLIS RY G+L ID + TV L +V+ FGTE RK I P +Y + F GS+++DL++ + Sbjct: 1 MSQYIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNSVKFNGSEVKDLSILD 78
BLAST of Protein LSM14 homolog B-A vs. Ensembl Nematostella
Match: EDO49317 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RHB0]) HSP 1 Score: 101.293 bits (251), Expect = 4.798e-26 Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNV 327 +IG I+L+SKA IRY G LY ID +ESTV L+ V+SFGTE RK+D IPPR+EIYEYI+FRG DI+DLNV Sbjct: 7 YIGSIINLVSKAEIRYVGTLYAIDTKESTVTLANVRSFGTEGRKVDVEIPPRNEIYEYIVFRGQDIKDLNV 77
BLAST of Protein LSM14 homolog B-A vs. Ensembl Medaka
Match: ENSORLT00000039753.1 (pep primary_assembly:ASM223467v1:3:30569759:30570647:-1 gene:ENSORLG00000028980.1 transcript:ENSORLT00000039753.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 135.576 bits (340), Expect = 2.470e-37 Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGILYTID STVAL+KV+SFGTEDR DR IPPR+E++EYIIFRGSDI+DL VCEP K +S L +D AIV+ Sbjct: 6 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPREEVFEYIIFRGSDIKDLTVCEPPKATSSLPQDPAIVQV 97
BLAST of Protein LSM14 homolog B-A vs. Ensembl Medaka
Match: lsm14b (protein LSM14 homolog B-B [Source:NCBI gene;Acc:101155509]) HSP 1 Score: 126.331 bits (316), Expect = 2.329e-31 Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 109 SSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRA 384 + +IG KISLISKA IRYEGIL ++D STVAL+KVKS+GTEDR DR +PP+DEIYEYIIFRGSDI+D+ V EP K L D AIV++ Sbjct: 7 TPYIGSKISLISKAQIRYEGILSSVDTERSTVALAKVKSYGTEDRHTDRPVPPKDEIYEYIIFRGSDIKDITVSEPPKPHMGLPRDPAIVQS 98 HSP 2 Score: 51.9878 bits (123), Expect = 1.208e-6 Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 1 Query: 1084 FKEDYDFETANAIIAKELAALHVSQXXXXXXXXXXXXXXGQLSDNSEAG-------YYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGM 1359 F D+DFETANA +L + ++ + G++ DN + YYDK K FFDNI S++ R + EE+K+N+ETFG+ Sbjct: 250 FDSDFDFETANAQFKDDLTKEVIVEKVES----------GEVQDNQDVQEETLTEKYYDKAKCFFDNIPSDVKPR-------RTTWAEEKKLNIETFGV 331
BLAST of Protein LSM14 homolog B-A vs. Ensembl Medaka
Match: LSM14B (protein LSM14 homolog A [Source:NCBI gene;Acc:101155350]) HSP 1 Score: 122.865 bits (307), Expect = 4.649e-30 Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1 Query: 115 FIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSK-ESSLLSEDSAIVRAETSISGNL 408 +IGCKI LISKA RYEGILYTID STV L+KVK FGTE R DR +PP++E+YEYI FRGSDI D+ +CEP+ S L D AI+ + ++I N+ Sbjct: 7 YIGCKIGLISKAQNRYEGILYTIDKINSTVVLAKVKCFGTEGRPADRPLPPKNEVYEYITFRGSDIMDIGLCEPAAYHHSSLPSDPAIIHSSSAIPSNV 105
BLAST of Protein LSM14 homolog B-A vs. Ensembl Medaka
Match: lsm14ab (LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]) HSP 1 Score: 49.6766 bits (117), Expect = 2.522e-6 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 1084 FKEDYDFETANAI-----IAKELAALHVSQXXXXXXXXXXXXXXGQLSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGM 1359 F+ED+DFETANA I KEL Q K +K E E+ + +N+ YYDKTKSFFDN+S E D + R+ EER++N ETFG+ Sbjct: 86 FEEDFDFETANAQFHKDEIDKEL------QTKLKLKASEVTAEEEEAVNNT--CYYDKTKSFFDNLSCE--DTRD----RRPTWAEERRMNAETFGL 168
BLAST of Protein LSM14 homolog B-A vs. Planmine SMEST
Match: SMESG000014632.1 (SMESG000014632.1) HSP 1 Score: 832.402 bits (2149), Expect = 0.000e+0 Identity = 484/486 (99.59%), Postives = 485/486 (99.79%), Query Frame = 1 Query: 106 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSGMHHIDNAWPSNNRMQTSEKPIMINNSKSVANSIEAQQNSTAQSTIGSNRFXXXXXXXXXXXXXXXXXXXXXXXPDVNNDETRYEYRPKGKMEKPQKYSEKYSSNYHEYDYNYDSNYKYQGNSYRVSCDYGPSRDYYHLKQTGXXXXXXXXXXXXXSMDANKLRGFESSENARDYSYAQYYDYKPRNGHEKYSSNYDNNPKSKKKSSRENETSKKDESFKEDYDFETANAIIAKELAALHVSQXXXXXXXXXXXXXXGQLSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMAEANRNLGRNSSKWNRNNRHYSKAXXXXXXXXXXXXXXXXTDSYKREPAYKTNSRGGGYNSSRRPVLA 1563 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSGMHHIDNAWPSNNRMQTSEKPIMINNSKSVANSIE QQNSTAQSTIGSNRFNQISNDNSKKQQQQQFRKNDTQKPDVNNDETRYEYRPKGKMEKPQKYSEKYSSNYHEYDYNYDSNYKYQGNSYRVSCDYGPSRDYYHLKQTGRYRNDYRRDNYYNSMDANKLRGFESSENARDYSYAQYYDYKPRNGHEKYSSNYDNNPKSKKKSSRENETSKKDESFKEDYDFETANAIIAKELAALHVSQEKKDVKDDECEKEDGQLSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMAEANRNLGRNSSKWNRNNRHYSKASRGGGGGSYRGNGGGGTDSYKREPAYKT+SRGGGYNSSRRPVLA Sbjct: 1 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSGMHHIDNAWPSNNRMQTSEKPIMINNSKSVANSIEVQQNSTAQSTIGSNRFNQISNDNSKKQQQQQFRKNDTQKPDVNNDETRYEYRPKGKMEKPQKYSEKYSSNYHEYDYNYDSNYKYQGNSYRVSCDYGPSRDYYHLKQTGRYRNDYRRDNYYNSMDANKLRGFESSENARDYSYAQYYDYKPRNGHEKYSSNYDNNPKSKKKSSRENETSKKDESFKEDYDFETANAIIAKELAALHVSQEKKDVKDDECEKEDGQLSDNSEAGYYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMAEANRNLGRNSSKWNRNNRHYSKASRGGGGGSYRGNGGGGTDSYKREPAYKTSSRGGGYNSSRRPVLA 486
BLAST of Protein LSM14 homolog B-A vs. Planmine SMEST
Match: SMESG000033950.1 (SMESG000033950.1) HSP 1 Score: 153.295 bits (386), Expect = 2.477e-40 Identity = 80/118 (67.80%), Postives = 90/118 (76.27%), Query Frame = 1 Query: 106 MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCEPSKESSLLSEDSAIVRAETSISGNLPPGVMSSGMHHIDNAWP 459 M++F+G KISLISKAGIRYEGILYTIDP ESTVALSKVKSFGTEDR +R I PRDE+YEYIIFRGSDI+DL+VC E+SL SEDSAIV+ + N PP V H ID P Sbjct: 1 MANFLGKKISLISKAGIRYEGILYTIDPTESTVALSKVKSFGTEDRPSERFISPRDEVYEYIIFRGSDIRDLHVC----ENSLYSEDSAIVKIMSPNFTNQPPHV-PLPQHGIDVGVP 113 HSP 2 Score: 67.0106 bits (162), Expect = 1.535e-11 Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 1078 ESFKEDYDFETANAIIAKELAALHVSQXXXXXXXXXXXXXXGQLSDNSEAG------------YYDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFG 1356 E K+D+DFE++NAI+A+ELA ++VS + + G LS++ E YYDK+KSFFDNISSE +R N + R+ ER+ N ETFG Sbjct: 264 EPIKDDFDFESSNAILAEELANINVSNDDNNRV--------GNLSESKEPSDQNLADYVEEKLYYDKSKSFFDNISSETSERTNSE------RRNERRSNTETFG 354
BLAST of Protein LSM14 homolog B-A vs. Planmine SMEST
Match: SMESG000020999.1 (SMESG000020999.1) HSP 1 Score: 144.821 bits (364), Expect = 8.445e-37 Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1 Query: 112 SFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCE-PSKESSLLSEDSAIVRAETSISGNLP 411 +F+GCKISLIS+AGIRYEGILYTID STVALSKVKSFGTEDR + +PPRDEIYEYIIFRGSDIQDL+VCE P K ++++D AI+ I+G P Sbjct: 5 AFLGCKISLISRAGIRYEGILYTIDANNSTVALSKVKSFGTEDRYAETPVPPRDEIYEYIIFRGSDIQDLHVCEAPKKHPQIMAQDPAIL----EITGKPP 101 HSP 2 Score: 62.3882 bits (150), Expect = 5.618e-10 Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 1234 YDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMAEANRN 1377 YD++KSF+DNISS+ DRA GK +R +N ++ERK+NVETFG N N Sbjct: 387 YDRSKSFYDNISSQATDRAKGKMIRAINWRDERKLNVETFGFNIPNNN 434
BLAST of Protein LSM14 homolog B-A vs. Planmine SMEST
Match: SMESG000020999.1 (SMESG000020999.1) HSP 1 Score: 144.436 bits (363), Expect = 4.769e-36 Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1 Query: 112 SFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRVIPPRDEIYEYIIFRGSDIQDLNVCE-PSKESSLLSEDSAIVRAETSISGNLP 411 +F+GCKISLIS+AGIRYEGILYTID STVALSKVKSFGTEDR + +PPRDEIYEYIIFRGSDIQDL+VCE P K ++++D AI+ I+G P Sbjct: 150 AFLGCKISLISRAGIRYEGILYTIDANNSTVALSKVKSFGTEDRYAETPVPPRDEIYEYIIFRGSDIQDLHVCEAPKKHPQIMAQDPAIL----EITGKPP 246 HSP 2 Score: 62.3882 bits (150), Expect = 7.578e-10 Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 1234 YDKTKSFFDNISSEMMDRANGKSVRQLNRKEERKINVETFGMAEANRN 1377 YD++KSF+DNISS+ DRA GK +R +N ++ERK+NVETFG N N Sbjct: 532 YDRSKSFYDNISSQATDRAKGKMIRAINWRDERKLNVETFGFNIPNNN 579 The following BLAST results are available for this feature:
BLAST of Protein LSM14 homolog B-A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Protein LSM14 homolog B-A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of Protein LSM14 homolog B-A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Protein LSM14 homolog B-A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Protein LSM14 homolog B-A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Protein LSM14 homolog B-A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Protein LSM14 homolog B-A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of Protein LSM14 homolog B-A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023487 ID=SMED30023487|Name=Protein LSM14 homolog B-A|organism=Schmidtea mediterranea sexual|type=transcript|length=1926bpback to top protein sequence of SMED30023487-orf-1 >SMED30023487-orf-1 ID=SMED30023487-orf-1|Name=SMED30023487-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=497bp MSSFIGCKISLISKAGIRYEGILYTIDPRESTVALSKVKSFGTEDRKMDRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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