Small nuclear ribonucleoprotein Sm D1

Overview
NameSmall nuclear ribonucleoprotein Sm D1
Smed IDSMED30023477
Length (bp)439
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Small nuclear ribonucleoprotein Sm D1 (SMED30023477) t-SNE clustered cells

Violin plots show distribution of expression levels for Small nuclear ribonucleoprotein Sm D1 (SMED30023477) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Small nuclear ribonucleoprotein Sm D1 (SMED30023477) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Small nuclear ribonucleoprotein Sm D1 (SMED30023477) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30023477

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30023477h1SMcG0011969 SmedASXL_058427SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30023477h1SMcG0011969 dd_Smed_v4_1826_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023477h1SMcG0011969 dd_Smed_v4_1826_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30023477h1SMcG0011969 dd_Smed_v4_1826_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023477h1SMcG0011969 dd_Smed_v4_1826_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158])

HSP 1 Score: 144.05 bits (362), Expect = 9.339e-45
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158])

HSP 1 Score: 70.8626 bits (172), Expect = 1.703e-16
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  185 VTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            +T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 52          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158])

HSP 1 Score: 55.4546 bits (132), Expect = 7.833e-11
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTV 139
            MKLVRFLM+LSHETVT+ELKNGT VHGT+
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTI 29          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:13940])

HSP 1 Score: 43.8986 bits (102), Expect = 5.655e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:13940])

HSP 1 Score: 43.8986 bits (102), Expect = 5.655e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Match: snr-3 (Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013])

HSP 1 Score: 134.42 bits (337), Expect = 2.891e-41
Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            MKLVRFLM+LSHETV +ELKNGT V GT+ GVD+AMNTHLR+V +T+KNKEP+ +DT SIRGNNIR  ILP+ L+LDT+LIDD P+
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPR 86          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Match: snr-3 (Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013])

HSP 1 Score: 88.5817 bits (218), Expect = 1.108e-23
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2
Query:  143 GVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            GVD+AMNTHLR+V +T+KNKEP+ +DT SIRGNNIR  ILP+ L+LDT+LIDD P+
Sbjct:    2 GVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPR 57          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Match: SmD1 (gene:FBgn0261933 transcript:FBtr0075952)

HSP 1 Score: 145.206 bits (365), Expect = 1.767e-45
Identity = 66/94 (70.21%), Postives = 86/94 (91.49%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334
            MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SV++TIKN++P++++T SIRGNNIR FILP++L L+T+LIDDTPK   KKK++
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Match: CG10418 (gene:FBgn0036277 transcript:FBtr0075954)

HSP 1 Score: 43.5134 bits (101), Expect = 3.590e-6
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT  +K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14])

HSP 1 Score: 141.354 bits (355), Expect = 6.881e-44
Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP  +++ SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14])

HSP 1 Score: 134.035 bits (336), Expect = 2.405e-41
Identity = 60/90 (66.67%), Postives = 78/90 (86.67%), Query Frame = 2
Query:   62 VRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331
             RFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP  +++ SIRGNNIR FILP++L LDT+L+D  PKV  KK+E
Sbjct:    5 CRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKRE 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: smx5 (smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10])

HSP 1 Score: 43.8986 bits (102), Expect = 3.487e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: LSM2 (si:ch73-14h10.2 [Source:ZFIN;Acc:ZDB-GENE-141222-67])

HSP 1 Score: 43.8986 bits (102), Expect = 3.487e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: smx5 (smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10])

HSP 1 Score: 43.1282 bits (100), Expect = 7.891e-6
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 2
Query:   68 FLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:   11 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 92          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999])

HSP 1 Score: 144.821 bits (364), Expect = 3.728e-45
Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999])

HSP 1 Score: 144.05 bits (362), Expect = 9.100e-45
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331
            MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E
Sbjct:    1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999])

HSP 1 Score: 144.05 bits (362), Expect = 1.570e-44
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331
            MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E
Sbjct:    1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: nipa2 (NIPA magnesium transporter 2 [Source:Xenbase;Acc:XB-GENE-973321])

HSP 1 Score: 43.8986 bits (102), Expect = 5.289e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344])

HSP 1 Score: 144.05 bits (362), Expect = 6.411e-45
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344])

HSP 1 Score: 59.3066 bits (142), Expect = 2.947e-12
Identity = 37/96 (38.54%), Postives = 46/96 (47.92%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+                                          ++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTIT-----------------------------------------DSLPLDTLLVDVEPKVKSKKREAVA 55          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344])

HSP 1 Score: 57.7658 bits (138), Expect = 2.067e-11
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTV 139
            MKLVRFLM+LSHETVT+ELKNGT VHGT+
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTI 29          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Lsm2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:90676])

HSP 1 Score: 43.8986 bits (102), Expect = 3.882e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Lsm2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:90676])

HSP 1 Score: 44.2838 bits (103), Expect = 6.063e-6
Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 2
Query:   47 FIMKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            F+     F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:   35 FVRLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 123          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q9VU02|SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=7227 GN=SmD1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.771e-44
Identity = 66/94 (70.21%), Postives = 86/94 (91.49%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334
            MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SV++TIKN++P++++T SIRGNNIR FILP++L L+T+LIDDTPK   KKK++
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|P62315|SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus OX=10090 GN=Snrpd1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q4R5F6|SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|P62314|SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q3ZC10|SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44
Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A397UWG2 (Small nuclear ribonucleoprotein Sm D1 OS=Gigaspora rosea OX=44941 GN=C2G38_68757 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.293e-47
Identity = 70/96 (72.92%), Postives = 89/96 (92.71%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+L++ETVT+ELKNGTIVHGT+ GVDM+MNTHL++VK+T+KNK+P+N+D+ SIRGNNIR +ILPE+L LDT+L+DDTPK   KKKE+TS
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTIVHGTITGVDMSMNTHLKTVKMTVKNKDPVNLDSLSIRGNNIRYYILPESLQLDTLLVDDTPKAKAKKKESTS 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1Y1YB15 (Small nuclear ribonucleoprotein Sm D1 OS=Basidiobolus meristosporus CBS 931.73 OX=1314790 GN=K493DRAFT_315101 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.769e-45
Identity = 66/98 (67.35%), Postives = 91/98 (92.86%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 346
            MKLVRFLM+LS+ETVT+ELKNGT+VHGT++GVDM+MNTHL++VK+T+KNK+P+N+D+ SIRGNNIR +ILP++L LDT+L+DD+PK   KK++T ++A
Sbjct:    1 MKLVRFLMKLSNETVTIELKNGTVVHGTISGVDMSMNTHLKTVKMTVKNKDPVNLDSLSIRGNNIRYYILPDSLPLDTLLVDDSPKAKGKKRDTPAVA 98          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: V4ATJ2 (Small nuclear ribonucleoprotein Sm D1 OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_187321 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.334e-44
Identity = 69/93 (74.19%), Postives = 84/93 (90.32%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331
            MKLVRFLM+LSHETVT+ELKNGT VHGTV GVD+ MNTHL++VK+TIKNK+P+ +DT SIRGNNIR FILP++L LDT+LIDDTPK  ++K+E
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDPVQIDTLSIRGNNIRYFILPDSLPLDTLLIDDTPKARQRKRE 93          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1B0DIV8 (Small nuclear ribonucleoprotein Sm D1 OS=Phlebotomus papatasi OX=29031 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.331e-43
Identity = 68/94 (72.34%), Postives = 85/94 (90.43%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD+AMNTHL++VK+TIKN++P+ +D+ SIRGNNIR +ILP++L L+T+LIDDTPK   KKKET
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGNNIRYYILPDSLPLETLLIDDTPKSKAKKKET 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1I8P4G0 (Small nuclear ribonucleoprotein Sm D1 OS=Stomoxys calcitrans OX=35570 GN=106092696 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.652e-43
Identity = 68/94 (72.34%), Postives = 85/94 (90.43%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334
            MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SVK+TIKN++P+ ++T S+RGNNIR FILP++L L+T+LIDDTPK   KKKET
Sbjct:    1 MKLVRFLMKLSHETVTMELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVQLETLSVRGNNIRYFILPDSLPLETLLIDDTPKSKSKKKET 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:103035501])

HSP 1 Score: 141.739 bits (356), Expect = 5.114e-44
Identity = 64/94 (68.09%), Postives = 82/94 (87.23%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP  +++ SIRGNNIR FILP++L LDT+L+D  PKV  KK+E 
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 94          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:103035501])

HSP 1 Score: 141.354 bits (355), Expect = 5.831e-44
Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP  +++ SIRGNNIR FILP++L LDT+L+D  PKV  KK+E  +
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVA 96          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: si:ch73-14h10.2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:103032596])

HSP 1 Score: 43.8986 bits (102), Expect = 3.419e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004306.1 (pep scaffold:Pmarinus_7.0:GL479170:18391:32201:1 gene:ENSPMAG00000003938.1 transcript:ENSPMAT00000004306.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 141.354 bits (355), Expect = 1.340e-44
Identity = 64/97 (65.98%), Postives = 83/97 (85.57%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTV--AGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETT 337
            MKL RFLM+LSHETVT+ELKNGT VHGTV  AGVD++MNTHL++VK+T+KN+EP+ +D+ SIRGNNIR +ILP++L LDT+L+DD PK   +K+E  
Sbjct:    1 MKLARFLMKLSHETVTIELKNGTQVHGTVTVAGVDISMNTHLKAVKLTVKNREPVTLDSLSIRGNNIRYYILPDSLPLDTLLVDDGPKAKARKREAA 97          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Yeast
Match: SMD1 (Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000003306])

HSP 1 Score: 68.5514 bits (166), Expect = 4.041e-16
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKN---------------------KEPINVDTFS------IRGNNIRGFILPETLSLDTMLID 298
            MKLV FL +L +E VT+ELKNGT V GT+  V   MN  L  VK+T+                       ++P   D  +      IRGN IR  ILP++L+LD++L+D
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD 109          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO27563 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8X0])

HSP 1 Score: 143.665 bits (361), Expect = 2.674e-45
Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTP 307
            MKLVRFLM+LSHETVT+ELKNGT++HGT+ GVDM+MNTHL++VK+T+KN+EP+ +++ SIRGNNIR FILPE+L LDT+L+DDTP
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNIRYFILPESLPLDTLLVDDTP 85          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO35984 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJZ4])

HSP 1 Score: 142.51 bits (358), Expect = 7.196e-45
Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTP 307
            MKLVRFLM+LSHETVT+ELKNGT++HGT+ GVDM+MNTHL++VK+T+KN+EP+ +++ SIRGNNIR FILPE+L LDT+L+DDTP
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNIRYFILPESLPLDTLLVDDTP 85          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO34663 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNR1])

HSP 1 Score: 47.3654 bits (111), Expect = 5.459e-8
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   VHGT+  VD  +N  L  + VT  +K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKEVIVELKNDLSVHGTLDSVDQFLNLKLTDIDVTDPDKYPHMLSVKNCFIRGSVVRYVQLPSE-EVDTQLLQDATR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:101162381])

HSP 1 Score: 127.102 bits (318), Expect = 1.713e-38
Identity = 56/89 (62.92%), Postives = 76/89 (85.39%), Query Frame = 2
Query:   74 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340
            M+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP  +++ SIRGNNIR FILP++L LDT+L+D  PK+  KK+E  +
Sbjct:    1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKIKSKKREAVA 89          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Match: smx5 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101162034])

HSP 1 Score: 43.8986 bits (102), Expect = 3.398e-6
Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2
Query:   53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310
            M    F   L  + V VELKN   + GT+  VD  +N  L  + VT   K P  ++V    IRG+ +R   LP    +DT L+ D  +
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87          
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Planmine SMEST
Match: SMESG000062388.1 (SMESG000062388.1)

HSP 1 Score: 182.185 bits (461), Expect = 2.388e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2
Query:   74 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 346
            MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA
Sbjct:    1 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 91          
The following BLAST results are available for this feature:
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SNRPD19.339e-4567.71small nuclear ribonucleoprotein D1 polypeptide [So... [more]
SNRPD11.703e-1657.69small nuclear ribonucleoprotein D1 polypeptide [So... [more]
SNRPD17.833e-1186.21small nuclear ribonucleoprotein D1 polypeptide [So... [more]
LSM25.655e-634.09LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
LSM25.655e-634.09LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snr-32.891e-4172.09Probable small nuclear ribonucleoprotein Sm D1 [S... [more]
snr-31.108e-2369.64Probable small nuclear ribonucleoprotein Sm D1 [S... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
SmD11.767e-4570.21gene:FBgn0261933 transcript:FBtr0075952[more]
CG104183.590e-634.09gene:FBgn0036277 transcript:FBtr0075954[more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
snrpd16.881e-4466.67small nuclear ribonucleoprotein D1 polypeptide [So... [more]
snrpd12.405e-4166.67small nuclear ribonucleoprotein D1 polypeptide [So... [more]
smx53.487e-634.09smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10][more]
LSM23.487e-634.09si:ch73-14h10.2 [Source:ZFIN;Acc:ZDB-GENE-141222-6... [more]
smx57.891e-634.94smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10][more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4
Match NameE-valueIdentityDescription
snrpd13.728e-4568.75small nuclear ribonucleoprotein D1 polypeptide [So... [more]
snrpd19.100e-4570.97small nuclear ribonucleoprotein D1 polypeptide [So... [more]
snrpd11.570e-4470.97small nuclear ribonucleoprotein D1 polypeptide [So... [more]
nipa25.289e-634.09NIPA magnesium transporter 2 [Source:Xenbase;Acc:X... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Snrpd16.411e-4567.71small nuclear ribonucleoprotein D1 [Source:MGI Sym... [more]
Snrpd12.947e-1238.54small nuclear ribonucleoprotein D1 [Source:MGI Sym... [more]
Snrpd12.067e-1186.21small nuclear ribonucleoprotein D1 [Source:MGI Sym... [more]
Lsm23.882e-634.09LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
Lsm26.063e-633.33LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9VU02|SMD1_DROME1.771e-4470.21Probable small nuclear ribonucleoprotein Sm D1 OS=... [more]
sp|P62315|SMD1_MOUSE4.485e-4467.71Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu... [more]
sp|Q4R5F6|SMD1_MACFA4.485e-4467.71Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa... [more]
sp|P62314|SMD1_HUMAN4.485e-4467.71Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi... [more]
sp|Q3ZC10|SMD1_BOVIN4.485e-4467.71Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A397UWG26.293e-4772.92Small nuclear ribonucleoprotein Sm D1 OS=Gigaspora... [more]
A0A1Y1YB158.769e-4567.35Small nuclear ribonucleoprotein Sm D1 OS=Basidiobo... [more]
V4ATJ22.334e-4474.19Small nuclear ribonucleoprotein Sm D1 OS=Lottia gi... [more]
A0A1B0DIV81.331e-4372.34Small nuclear ribonucleoprotein Sm D1 OS=Phlebotom... [more]
A0A1I8P4G02.652e-4372.34Small nuclear ribonucleoprotein Sm D1 OS=Stomoxys ... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
snrpd15.114e-4468.09small nuclear ribonucleoprotein D1 polypeptide [So... [more]
snrpd15.831e-4466.67small nuclear ribonucleoprotein D1 polypeptide [So... [more]
si:ch73-14h10.23.419e-634.09LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000004306.11.340e-4465.98pep scaffold:Pmarinus_7.0:GL479170:18391:32201:1 g... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
SMD14.041e-1638.53Core Sm protein Sm D1; part of heteroheptameric co... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO275632.674e-4572.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO359847.196e-4572.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO346635.459e-836.36Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
snrpd11.713e-3862.92small nuclear ribonucleoprotein D1 polypeptide [So... [more]
smx53.398e-634.09LSM2 homolog, U6 small nuclear RNA and mRNA degrad... [more]
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BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000062388.12.388e-60100.00SMESG000062388.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023477 ID=SMED30023477|Name=Small nuclear ribonucleoprotein Sm D1|organism=Schmidtea mediterranea sexual|type=transcript|length=439bp
CCAATTTTGTTTTAATTCTTATTTATTTTAAATTAATCTAACCATTTTTA
TCATGAAGCTTGTTCGATTTTTAATGCGACTTTCTCATGAGACAGTTACT
GTTGAACTAAAAAATGGAACAATAGTTCATGGTACTGTTGCAGGTGTCGA
TATGGCGATGAATACTCATTTACGTTCAGTCAAAGTAACAATAAAAAACA
AAGAACCAATAAATGTGGATACTTTTAGTATTAGAGGCAATAATATTAGG
GGCTTTATTTTACCAGAAACTCTTTCTCTCGATACTATGTTAATTGATGA
TACGCCAAAAGTCAGTAAGAAAAAGAAAGAAACTACTTCTTTGGCTCGTG
GAAGAGGACGTGGTGGTCCTCGTGGTAGAGGCCGTGGTACTAGAGTTAGA
GGGCGTGGACGACCTCGCTAATTGTTTTATAAATAAATA
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protein sequence of SMED30023477-orf-1

>SMED30023477-orf-1 ID=SMED30023477-orf-1|Name=SMED30023477-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=123bp
MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNK
EPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLARG
RGRGGPRGRGRGTRVRGRGRPR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR027141LSm4/Sm_D1/D3
IPR034102Sm_D1
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
Vocabulary: cellular component
TermDefinition
GO:0000243commitment complex
GO:0005634nucleus
GO:0005681spliceosomal complex
GO:0005682U5 snRNP
GO:0005685U1 snRNP
GO:0005686U2 snRNP
GO:0005687U4 snRNP
GO:0005689U12-type spliceosomal complex
GO:0005737cytoplasm
GO:0005829cytosol
GO:0030529intracellular ribonucleoprotein complex
GO:0034709methylosome
GO:0034715pICln-Sm protein complex
GO:0034719SMN-Sm protein complex
GO:0071010prespliceosome
GO:0071011precatalytic spliceosome
GO:0071013catalytic step 2 spliceosome
GO:0097526spliceosomal tri-snRNP complex
Vocabulary: biological process
TermDefinition
GO:0000245spliceosomal complex assembly
GO:0000387spliceosomal snRNP assembly
GO:0006396RNA processing
GO:0006397mRNA processing
GO:0008380RNA splicing
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:1990446U1 snRNP binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 2.0E-14
score: 63.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..66
e-value: 7.7E-17
score: 60.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..85
e-value: 1.6E-32
score: 112.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..122
NoneNo IPR availablePANTHERPTHR23338:SF32SMALL NUCLEAR RIBONUCLEOPROTEIN SMD1Acoord: 1..112
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..112
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 2.05822E-51
score: 155.461
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 4..118