Small nuclear ribonucleoprotein Sm D1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023477 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158]) HSP 1 Score: 144.05 bits (362), Expect = 9.339e-45 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158]) HSP 1 Score: 70.8626 bits (172), Expect = 1.703e-16 Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 185 VTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 +T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 52
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158]) HSP 1 Score: 55.4546 bits (132), Expect = 7.833e-11 Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTV 139 MKLVRFLM+LSHETVT+ELKNGT VHGT+ Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTI 29
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:13940]) HSP 1 Score: 43.8986 bits (102), Expect = 5.655e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Match: LSM2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:13940]) HSP 1 Score: 43.8986 bits (102), Expect = 5.655e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Match: snr-3 (Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013]) HSP 1 Score: 134.42 bits (337), Expect = 2.891e-41 Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 MKLVRFLM+LSHETV +ELKNGT V GT+ GVD+AMNTHLR+V +T+KNKEP+ +DT SIRGNNIR ILP+ L+LDT+LIDD P+ Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPR 86
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Match: snr-3 (Probable small nuclear ribonucleoprotein Sm D1 [Source:UniProtKB/Swiss-Prot;Acc:Q10013]) HSP 1 Score: 88.5817 bits (218), Expect = 1.108e-23 Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2 Query: 143 GVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 GVD+AMNTHLR+V +T+KNKEP+ +DT SIRGNNIR ILP+ L+LDT+LIDD P+ Sbjct: 2 GVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPR 57
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Match: SmD1 (gene:FBgn0261933 transcript:FBtr0075952) HSP 1 Score: 145.206 bits (365), Expect = 1.767e-45 Identity = 66/94 (70.21%), Postives = 86/94 (91.49%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334 MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SV++TIKN++P++++T SIRGNNIR FILP++L L+T+LIDDTPK KKK++ Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Match: CG10418 (gene:FBgn0036277 transcript:FBtr0075954) HSP 1 Score: 43.5134 bits (101), Expect = 3.590e-6 Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT +K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRYVQLPGD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]) HSP 1 Score: 141.354 bits (355), Expect = 6.881e-44 Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP +++ SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]) HSP 1 Score: 134.035 bits (336), Expect = 2.405e-41 Identity = 60/90 (66.67%), Postives = 78/90 (86.67%), Query Frame = 2 Query: 62 VRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331 RFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP +++ SIRGNNIR FILP++L LDT+L+D PKV KK+E Sbjct: 5 CRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKRE 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: smx5 (smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10]) HSP 1 Score: 43.8986 bits (102), Expect = 3.487e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: LSM2 (si:ch73-14h10.2 [Source:ZFIN;Acc:ZDB-GENE-141222-67]) HSP 1 Score: 43.8986 bits (102), Expect = 3.487e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Match: smx5 (smx5 [Source:ZFIN;Acc:ZDB-GENE-000616-10]) HSP 1 Score: 43.1282 bits (100), Expect = 7.891e-6 Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 2 Query: 68 FLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 11 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 92
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999]) HSP 1 Score: 144.821 bits (364), Expect = 3.728e-45 Identity = 66/96 (68.75%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999]) HSP 1 Score: 144.05 bits (362), Expect = 9.100e-45 Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331 MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:447999]) HSP 1 Score: 144.05 bits (362), Expect = 1.570e-44 Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331 MKLVRFLM+LSHETVTVELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKRE 93
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Match: nipa2 (NIPA magnesium transporter 2 [Source:Xenbase;Acc:XB-GENE-973321]) HSP 1 Score: 43.8986 bits (102), Expect = 5.289e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344]) HSP 1 Score: 144.05 bits (362), Expect = 6.411e-45 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344]) HSP 1 Score: 59.3066 bits (142), Expect = 2.947e-12 Identity = 37/96 (38.54%), Postives = 46/96 (47.92%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ ++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTIT-----------------------------------------DSLPLDTLLVDVEPKVKSKKREAVA 55
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Snrpd1 (small nuclear ribonucleoprotein D1 [Source:MGI Symbol;Acc:MGI:98344]) HSP 1 Score: 57.7658 bits (138), Expect = 2.067e-11 Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTV 139 MKLVRFLM+LSHETVT+ELKNGT VHGT+ Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTI 29
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Lsm2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:90676]) HSP 1 Score: 43.8986 bits (102), Expect = 3.882e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Match: Lsm2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:90676]) HSP 1 Score: 44.2838 bits (103), Expect = 6.063e-6 Identity = 30/90 (33.33%), Postives = 43/90 (47.78%), Query Frame = 2 Query: 47 FIMKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 F+ F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 35 FVRLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 123
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q9VU02|SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster OX=7227 GN=SmD1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.771e-44 Identity = 66/94 (70.21%), Postives = 86/94 (91.49%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334 MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SV++TIKN++P++++T SIRGNNIR FILP++L L+T+LIDDTPK KKK++ Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|P62315|SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus OX=10090 GN=Snrpd1 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q4R5F6|SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|P62314|SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Match: sp|Q3ZC10|SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.485e-44 Identity = 65/96 (67.71%), Postives = 84/96 (87.50%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP+ ++T SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A397UWG2 (Small nuclear ribonucleoprotein Sm D1 OS=Gigaspora rosea OX=44941 GN=C2G38_68757 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 6.293e-47 Identity = 70/96 (72.92%), Postives = 89/96 (92.71%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+L++ETVT+ELKNGTIVHGT+ GVDM+MNTHL++VK+T+KNK+P+N+D+ SIRGNNIR +ILPE+L LDT+L+DDTPK KKKE+TS Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTIVHGTITGVDMSMNTHLKTVKMTVKNKDPVNLDSLSIRGNNIRYYILPESLQLDTLLVDDTPKAKAKKKESTS 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1Y1YB15 (Small nuclear ribonucleoprotein Sm D1 OS=Basidiobolus meristosporus CBS 931.73 OX=1314790 GN=K493DRAFT_315101 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 8.769e-45 Identity = 66/98 (67.35%), Postives = 91/98 (92.86%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 346 MKLVRFLM+LS+ETVT+ELKNGT+VHGT++GVDM+MNTHL++VK+T+KNK+P+N+D+ SIRGNNIR +ILP++L LDT+L+DD+PK KK++T ++A Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTVVHGTISGVDMSMNTHLKTVKMTVKNKDPVNLDSLSIRGNNIRYYILPDSLPLDTLLVDDSPKAKGKKRDTPAVA 98
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: V4ATJ2 (Small nuclear ribonucleoprotein Sm D1 OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_187321 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 2.334e-44 Identity = 69/93 (74.19%), Postives = 84/93 (90.32%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKE 331 MKLVRFLM+LSHETVT+ELKNGT VHGTV GVD+ MNTHL++VK+TIKNK+P+ +DT SIRGNNIR FILP++L LDT+LIDDTPK ++K+E Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDPVQIDTLSIRGNNIRYFILPDSLPLDTLLIDDTPKARQRKRE 93
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1B0DIV8 (Small nuclear ribonucleoprotein Sm D1 OS=Phlebotomus papatasi OX=29031 PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.331e-43 Identity = 68/94 (72.34%), Postives = 85/94 (90.43%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD+AMNTHL++VK+TIKN++P+ +D+ SIRGNNIR +ILP++L L+T+LIDDTPK KKKET Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSIRGNNIRYYILPDSLPLETLLIDDTPKSKAKKKET 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Match: A0A1I8P4G0 (Small nuclear ribonucleoprotein Sm D1 OS=Stomoxys calcitrans OX=35570 GN=106092696 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.652e-43 Identity = 68/94 (72.34%), Postives = 85/94 (90.43%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334 MKLVRFLM+LSHETVT+ELKNGT +HGT+ GVD+AMNTHL+SVK+TIKN++P+ ++T S+RGNNIR FILP++L L+T+LIDDTPK KKKET Sbjct: 1 MKLVRFLMKLSHETVTMELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVQLETLSVRGNNIRYFILPDSLPLETLLIDDTPKSKSKKKET 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:103035501]) HSP 1 Score: 141.739 bits (356), Expect = 5.114e-44 Identity = 64/94 (68.09%), Postives = 82/94 (87.23%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKET 334 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP +++ SIRGNNIR FILP++L LDT+L+D PKV KK+E Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 94
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:103035501]) HSP 1 Score: 141.354 bits (355), Expect = 5.831e-44 Identity = 64/96 (66.67%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 MKLVRFLM+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP +++ SIRGNNIR FILP++L LDT+L+D PKV KK+E + Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREAVA 96
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Match: si:ch73-14h10.2 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:103032596]) HSP 1 Score: 43.8986 bits (102), Expect = 3.419e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004306.1 (pep scaffold:Pmarinus_7.0:GL479170:18391:32201:1 gene:ENSPMAG00000003938.1 transcript:ENSPMAT00000004306.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 141.354 bits (355), Expect = 1.340e-44 Identity = 64/97 (65.98%), Postives = 83/97 (85.57%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTV--AGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETT 337 MKL RFLM+LSHETVT+ELKNGT VHGTV AGVD++MNTHL++VK+T+KN+EP+ +D+ SIRGNNIR +ILP++L LDT+L+DD PK +K+E Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVHGTVTVAGVDISMNTHLKAVKLTVKNREPVTLDSLSIRGNNIRYYILPDSLPLDTLLVDDGPKAKARKREAA 97
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Yeast
Match: SMD1 (Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000003306]) HSP 1 Score: 68.5514 bits (166), Expect = 4.041e-16 Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKN---------------------KEPINVDTFS------IRGNNIRGFILPETLSLDTMLID 298 MKLV FL +L +E VT+ELKNGT V GT+ V MN L VK+T+ ++P D + IRGN IR ILP++L+LD++L+D Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD 109
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO27563 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8X0]) HSP 1 Score: 143.665 bits (361), Expect = 2.674e-45 Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTP 307 MKLVRFLM+LSHETVT+ELKNGT++HGT+ GVDM+MNTHL++VK+T+KN+EP+ +++ SIRGNNIR FILPE+L LDT+L+DDTP Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNIRYFILPESLPLDTLLVDDTP 85
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO35984 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJZ4]) HSP 1 Score: 142.51 bits (358), Expect = 7.196e-45 Identity = 62/85 (72.94%), Postives = 80/85 (94.12%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTP 307 MKLVRFLM+LSHETVT+ELKNGT++HGT+ GVDM+MNTHL++VK+T+KN+EP+ +++ SIRGNNIR FILPE+L LDT+L+DDTP Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSIRGNNIRYFILPESLPLDTLLVDDTP 85
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Match: EDO34663 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SNR1]) HSP 1 Score: 47.3654 bits (111), Expect = 5.459e-8 Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN VHGT+ VD +N L + VT +K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKEVIVELKNDLSVHGTLDSVDQFLNLKLTDIDVTDPDKYPHMLSVKNCFIRGSVVRYVQLPSE-EVDTQLLQDATR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Match: snrpd1 (small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:101162381]) HSP 1 Score: 127.102 bits (318), Expect = 1.713e-38 Identity = 56/89 (62.92%), Postives = 76/89 (85.39%), Query Frame = 2 Query: 74 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTS 340 M+LSHETVT+ELKNGT VHGT+ GVD++MNTHL++VK+T+KN+EP +++ SIRGNNIR FILP++L LDT+L+D PK+ KK+E + Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKIKSKKREAVA 89
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Match: smx5 (LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:101162034]) HSP 1 Score: 43.8986 bits (102), Expect = 3.398e-6 Identity = 30/88 (34.09%), Postives = 42/88 (47.73%), Query Frame = 2 Query: 53 MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEP--INVDTFSIRGNNIRGFILPETLSLDTMLIDDTPK 310 M F L + V VELKN + GT+ VD +N L + VT K P ++V IRG+ +R LP +DT L+ D + Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Planmine SMEST
Match: SMESG000062388.1 (SMESG000062388.1) HSP 1 Score: 182.185 bits (461), Expect = 2.388e-60 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 Query: 74 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 346 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA Sbjct: 1 MRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKEPINVDTFSIRGNNIRGFILPETLSLDTMLIDDTPKVSKKKKETTSLA 91 The following BLAST results are available for this feature:
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Small nuclear ribonucleoprotein Sm D1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023477 ID=SMED30023477|Name=Small nuclear ribonucleoprotein Sm D1|organism=Schmidtea mediterranea sexual|type=transcript|length=439bpback to top protein sequence of SMED30023477-orf-1 >SMED30023477-orf-1 ID=SMED30023477-orf-1|Name=SMED30023477-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=123bp MKLVRFLMRLSHETVTVELKNGTIVHGTVAGVDMAMNTHLRSVKVTIKNKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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