TTF-type domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Homology
BLAST of TTF-type domain-containing protein vs. Ensembl Human
Match: THAP12 (THAP domain containing 12 [Source:HGNC Symbol;Acc:HGNC:9440]) HSP 1 Score: 49.6766 bits (117), Expect = 3.580e-6 Identity = 29/111 (26.13%), Postives = 58/111 (52.25%), Query Frame = 3 Query: 162 MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELA---HSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVHHCTSISDSCQI 485 FS+++++ I+ E + + RF D +NL E F+ F+P + E LA H+++ L+++Y RGQ Y ++ + +++LEK A++ ++ SC + Sbjct: 259 FFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYEADAEILAVKFHTMITE--KWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIY---TLCSSCAL 364
BLAST of TTF-type domain-containing protein vs. Ensembl Zebrafish
Match: CR762475.1 (pep chromosome:GRCz11:4:55494751:55498830:1 gene:ENSDARG00000098243.2 transcript:ENSDART00000172605.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR762475.1) HSP 1 Score: 68.1662 bits (165), Expect = 2.364e-12 Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 162 MFSVVSNETSYISITEQVSIRARF-SDVENNLNENFLQFIPVTSTR-EELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HC 458 +FS++ +ET+ +S EQVS R+ D+E + E FLQ + ST +EL + ++ L LDL IRGQGYDGAA + G + GLQ++I + A++ HC Sbjct: 404 IFSILLDETTDVSHKEQVSFVVRYVRDME--VKERFLQVCTLESTTGKELENVVISLLQDNGLDLKNIRGQGYDGAANMSGMYKGLQSRIRAHNEKALYVHC 503
BLAST of TTF-type domain-containing protein vs. Ensembl Xenopus
Match: tbx18 (T-box 18 [Source:Xenbase;Acc:XB-GENE-489907]) HSP 1 Score: 73.559 bits (179), Expect = 9.950e-15 Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 39 KVHLENSSANAICTSD*IQNEIISAFNEIILQSC*KDK*K*MFSVVSNETSYISITEQVSIRARFSDV---ENNLNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYI 506 K HL+N+ NA+ D ++ IISA N + FSV+++E++ IS EQ+S+ RF D+ + E FL F + + +A+ I++ L++D + GQGYDG + + G G+QAKI EK A+ HC S +++ + EIRN I Sbjct: 119 KNHLKNAPVNALLCEDILRERIISAANNSV-----------GFSVIADESADISGHEQLSLGVRFVDLTITPVKIREEFLGFATLKAFDATSIANVIMEQCIKFGLNIDKLYGQGYDGCSTMAGKEGGVQAKIKEKYPRAIFVHCASHKLNLVVNNLNAVPEIRNAI 274 HSP 2 Score: 25.7942 bits (55), Expect = 9.950e-15 Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 2 Query: 8 FRVDSGDEILKSTL 49 FR++SGDEILK+ L Sbjct: 109 FRIESGDEILKNHL 122
BLAST of TTF-type domain-containing protein vs. Ensembl Xenopus
Match: slc10a6 (solute carrier family 10 (sodium/bile acid cotransporter), member 6 [Source:Xenbase;Acc:XB-GENE-988401]) HSP 1 Score: 69.707 bits (169), Expect = 9.955e-13 Identity = 54/167 (32.34%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 39 KVHLENSSANAICTSD*IQNEIISAFNEIILQSC*KDK*K*MFSVVSNETSYISITEQVSIRARFSDV---ENNLNENFLQFIPVTST-REELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYI 506 K HL+N+ NA TS ++NE+I +L FSV+++E++ IS EQ+S+ RF D+ + E FL F + + +A+ I++ L++D + GQGYDG + + G G+QAKI EK A+ +C S ++D + +IRN I Sbjct: 173 KNHLKNAPVNARYTSVRVENELI------VLSG---------FSVIADESADISGHEQLSLGVRFVDLTITPVKIREEFLGFATLKAVDATSIANVIMEQCIKFGLNMDKLYGQGYDGCSTMAGKEGGVQAKIKEKYPRAIFVYCASHKLNLVVNDLKAVPDIRNAI 324
BLAST of TTF-type domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000043220.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:7:36411169:36451375:1 gene:ENSXETG00000018966.1 transcript:ENSXETT00000043220.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.8398 bits (133), Expect = 3.917e-8 Identity = 40/138 (28.99%), Postives = 73/138 (52.90%), Query Frame = 3 Query: 165 FSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIP-VTSTREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HC---------TSISDSCQIREIRNYIEIFEKAFAFMSTT 545 +S+ + T +S T+Q++ + + E F++FIP V E L +++D+L ++D+ RGQ YD A+ + G ++GLQA+I + AV+ C TS ++SC RE ++ I ++ + F S + Sbjct: 248 YSISVDSTPDVSHTDQLAFIICYVKNDGIPKERFIKFIPNVGHKAENLFSAVMDTLKEYHIDILDCRGQSYDNASNMSGPYSGLQARIKQVNPLAVYIPCSAHSLNLVGTSAAESC--REAVSFFCILQQLYHFFSAS 383
BLAST of TTF-type domain-containing protein vs. Ensembl Xenopus
Match: thap12 (THAP domain containing 12 [Source:NCBI gene;Acc:394650]) HSP 1 Score: 48.521 bits (114), Expect = 7.850e-6 Identity = 29/109 (26.61%), Postives = 53/109 (48.62%), Query Frame = 3 Query: 162 MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELAHSILDSL-HSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVHHCTSISDSCQI 485 FSVV + + E + + RF D NNL E FL F+P + LA + ++ L++++ RGQ Y ++ + + +++LE VH ++S +C + Sbjct: 253 FFSVVMEDAVSLGGEEHMPVFVRFIDETNNLREEFLGFLPCEGDAKALALNFHTTMTEKWGLNMEFCRGQAYVTSSGLSANMKFVASQLLEMYPQVVH---TLSSTCAL 358
BLAST of TTF-type domain-containing protein vs. Ensembl Mouse
Match: Thap12 (THAP domain containing 12 [Source:MGI Symbol;Acc:MGI:1920231]) HSP 1 Score: 49.2914 bits (116), Expect = 3.876e-6 Identity = 29/109 (26.61%), Postives = 56/109 (51.38%), Query Frame = 3 Query: 162 MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELAHSILDSL-HSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVHHCTSISDSCQI 485 FS+++++ I+ E + + RF D +NL E F+ F+P + E LA ++ L+++Y RGQ Y ++ + +++LEK AV+ ++ SC + Sbjct: 255 FFSIITDDVVDIAGEEHLPVLVRFVDDAHNLREEFVGFLPYEADAEILAVKFHTTITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAVY---TLCSSCAL 360
BLAST of TTF-type domain-containing protein vs. TrEMBL
Match: A0A5E4NES0 (Uncharacterized protein OS=Cinara cedri OX=506608 GN=CINCED_3A017282 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.462e-26 Identity = 74/182 (40.66%), Postives = 109/182 (59.89%), Query Frame = 3 Query: 51 ENSSANAICTSD*IQNEIISAFNEIIL--------QSC*KDK*K*MFSVVSNETSYISITEQVSIRARFSDVENN-LNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCT------SISDSCQIREIRNYIEIFEKAFAFMSTT 545 EN N TS IQNEI+ + EIIL ++C FS+++++TS IS TEQ S+ AR+ D+E+ ++E FL+F+PVT + LA +I+D L ++ Y+RGQGYDGAAA+ G FNG+QA I E +A++ HC+ SIS +C + IRN + E +AF++T Sbjct: 199 ENCGRNVQYTSSQIQNEIVESCFEIILSKIVNKINKNC-------YFSILADKTSDISETEQFSLCARYYDLEDKKIHETFLKFVPVTDLSGRSLAQTIIDELTQLKMNFKYLRGQGYDGAAAMSGKFNGVQAFIRESYYSAIYVHCSAHNLNLSISYACSVPSIRNAMRTIESIYAFLNTP 373
BLAST of TTF-type domain-containing protein vs. TrEMBL
Match: A0A2L2YQ72 (DUF4371 domain-containing protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.043e-26 Identity = 72/181 (39.78%), Postives = 110/181 (60.77%), Query Frame = 3 Query: 48 LENSSANAICTSD*IQNEIISAFNEIILQS-C*KDK*K*MFSVVSNETSYISITEQVSIRARFSDVEN-NLNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCT------SISDSCQIREIRNYIEIFEKAFAFMSTT*RNAV 560 LE+S NA TS QNE+I N +ILQ K FS++++ET+ I+ EQ+S+ R+ D EN N+ E FLQFIPV T + +A +ILD L S +D+ +RGQGYDGAA++ G NG+QA + + +A++ HC+ ++S++C+I IRN + + + F++T R V Sbjct: 47 LESSRKNAQYTSPRFQNEVIEVCNILILQKLATKINDATCFSILADETTDIAGIEQLSLCVRYVDKENFNITEQFLQFIPVHDLTGKAIATTILDQLQSMKVDIKKLRGQGYDGAASMSGKINGVQAHVRSIVPSALYVHCSAHSLNLAVSNACEITGIRNCLGTIKTLYDFLNTPKRQYV 227
BLAST of TTF-type domain-containing protein vs. TrEMBL
Match: A0A2S2P9A7 (Repressor of the inhibitor of the protein kinase OS=Schizaphis graminum OX=13262 GN=PRKRIR_10 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.146e-26 Identity = 80/191 (41.88%), Postives = 114/191 (59.69%), Query Frame = 3 Query: 30 KY*KVHLENSSANAICTSD*IQNEIISAFNEIILQS--C*KDK*K*MFSVVSNETSYISITEQVSIRARFSDVE-NNLNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCT------SISDSCQIREIRNYIEIFEKAFAFMSTT*RNAVYKI 569 +Y K HL + + NA S IQNEI+SA N +ILQ+ C +K K FSV+++ETS IS EQ++I R+ ++E + E+FLQF+ VT + + LA +IL +L L+L+Y+ GQGYDGAAA+ G FNG Q I +K A++ HC +IS SC + +IRN + + F R V KI Sbjct: 69 EYLKSHLTSCAKNATYLSWKIQNEILSACNNLILQNLVCAVNKAK-GFSVLADETSDISNKEQLTICVRYVNLEQKKIREDFLQFVEVTDVSGKALAQTILQNLEIMGLELNYLIGQGYDGAAAMSGKFNGTQKHINDKYPMALYIHCGAHCLNLAISFSCNVTDIRNCMGTMQAICNFFGYPKRQNVLKI 258
BLAST of TTF-type domain-containing protein vs. TrEMBL
Match: A0A1B6JRW0 (TTF-type domain-containing protein OS=Homalodisca liturata OX=320908 GN=g.13176 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.826e-26 Identity = 78/187 (41.71%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 39 KVHLENSSANAICTSD*IQNEIISAFNEIILQS-C*KDK*K*MFSVVSNETSYISITEQVSIRARF--SDVENNLN--ENFLQFIPVTSTR-EELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYIEIFEKAFAFMSTT*RNAV 560 K H E+ NA S QN+II A N+II + K K FS++++ETS +S EQ S+ R+ SD NN E FL+F+P+TST ELA +++ L +N+D++ +RGQGYDGAAA+ G FNG QA I E TA+ HC S +S++ ++ IRN I E+ + F +T R AV Sbjct: 265 KKHFESCGKNATYISWNFQNQIIDACNQIITEKIATKVKEAKFFSILADETSDVSTIEQFSLCLRYVDSDASNNYQICEQFLKFMPLTSTTGRELAKTVIKGLEDSNIDVNNLRGQGYDGAAAMSGKFNGTQACIQEAHPTAIFVHCASHSLNLALSNASEVAPIRNCFGIVERVYNFFNTPKRQAV 451
BLAST of TTF-type domain-containing protein vs. TrEMBL
Match: A0A5N4AYX7 (Uncharacterized protein OS=Photinus pyralis OX=7054 GN=PPYR_04748 PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.949e-25 Identity = 77/187 (41.18%), Postives = 110/187 (58.82%), Query Frame = 3 Query: 45 HLENSSANAICTSD*IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARF--SDVENNLN--ENFLQFIPVTSTR-EELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYIEIFEKAFAFMSTT*RNAVYK 566 H +N NA S IQNEI++A + +I + + K FS++++ETS +S EQ S+ R+ D E+ E FL+F+PVTST E LA++I L NLD++ +RGQGYDGAA++ G+F G QA+I K A++ HC S +S+S IR+I+N I EK F +T R AV K Sbjct: 267 HFQNCGKNATYISWKIQNEILAASHRVIKEKIIAEVKDAKFFSILADETSDVSTMEQFSLCLRYLKRDAESKYTICEKFLEFVPVTSTTGEALANTIETVLRENNLDIENLRGQGYDGAASMSGSFKGTQARIAAKFPKALYVHCASHSLNLALSNSSGIRQIKNCFGIIEKLAVFFNTPKREAVLK 453
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000035789.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000101.1:2843018:2852765:1 gene:ENSAMXG00000037827.1 transcript:ENSAMXT00000035789.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 73.1738 bits (178), Expect = 3.957e-14 Identity = 56/182 (30.77%), Postives = 97/182 (53.30%), Query Frame = 3 Query: 51 ENSSANAICTSD*IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDVENN---------LNENFLQFIPVT-STREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQ-IREIRNYIEIFEKAFAFMS 539 + S+ N + S IQNE+I+ ++ + + K +SV+ + T +S +Q+S R+ V + +NE+FL F ++ T + L I + + S L L RGQGYDGA+ + G ++G+Q +IL+K AV+ HC + ++D+CQ I EI+ Y +I ++ + F S Sbjct: 86 KKSNVNYLSPS--IQNELIALLSQRVHDEIVSEIKEAEFYSVIMDTTQDLSKVDQLSQVFRYVTVRKDEADNAIAVDINESFLGFQNISDQTAQGLETKITELIQSKGLPLHKCRGQGYDGASTMSGIYSGVQKRILDKEPNAVYVHCAAHNLNLVLNDACQHITEIKEYYDILQRLYVFFS 265
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000042930.1 (pep primary_assembly:Astyanax_mexicanus-2.0:12:25471427:25473738:-1 gene:ENSAMXG00000037442.1 transcript:ENSAMXT00000042930.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.633 bits (174), Expect = 1.231e-13 Identity = 53/169 (31.36%), Postives = 91/169 (53.85%), Query Frame = 3 Query: 90 IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDVENN---------LNENFLQFIPVT-STREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQ-IREIRNYIEIFEKAFAFMS 539 IQNE+I+ ++ + + K +SV+ + T +S +Q+S R+ V + +NE+FL F ++ T + L I + + S L L RGQGYDGA+ + G ++G+Q +IL+K AV+ HC + ++D+CQ I EI+ Y +I ++ + F S Sbjct: 139 IQNELIALLSQRVHDEIVSEIKEAEFYSVIMDTTQDLSKVDQLSQVFRYVTVRKDEADNAIAVDINESFLGFQNISDQTAQGLETKITELIQSNGLLLHKCRGQGYDGASTMSGIYSGVQKRILDKEPNAVYVHCAAHNLNLVLNDACQHITEIKEYYDILQRLYVFFS 307
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000032220.1 (pep primary_assembly:Astyanax_mexicanus-2.0:24:13450075:13452201:1 gene:ENSAMXG00000029800.1 transcript:ENSAMXT00000032220.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 58.151 bits (139), Expect = 3.150e-9 Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 3 Query: 66 NAICTSD*IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREE-LAHSILDSLHSTNLDL-DYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQ-IREIRNYIEIFEKAFAFMS 539 NA TS IQNE++S +++ ++ K +FS++ +ET + EQ+S+ R+ ++E+FL F L I+ L S L+ D + GQ YDGA+ + G + G+QA+I E+ + A + HC++ + D+ + + E + + E+ + F S Sbjct: 122 NAKYTSKVIQNEVLSCLADMVRTKIIEEVKDSEVFSIMVDETKDVKKKEQISLVVRYY-FSGAVHESFLHFESADRLDAAGLTDKIIHILQSHGLEYRDNLVGQAYDGASVMSGKYTGVQARIKEQAKHAFYVHCSAHCLNLVLVDTVKTVPEADQFFSLLERLYVFTS 289
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000034915.1 (pep primary_assembly:Astyanax_mexicanus-2.0:4:24766423:24768072:-1 gene:ENSAMXG00000029140.1 transcript:ENSAMXT00000034915.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 56.225 bits (134), Expect = 1.547e-8 Identity = 47/133 (35.34%), Postives = 75/133 (56.39%), Query Frame = 3 Query: 78 TSD*IQNEIISAFNEIILQSC*KDK*K*--MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELAHSILDSLHSTNLDLD---YIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HC 458 TS IQN++I+ E+I +S KD+ K +V+ +ET+ IS T Q+S+ R+ E+ + E F++F VT ++ AH I + + D + + Q YDGAA + NG+QAK+ EK+ A+ HC Sbjct: 210 TSGTIQNDLINVVAEVIGKSI-KDEIKDAAFTAVMVDETTDISNTTQLSLVLRYV-TEDGIKERFVKFEDVTKSKR--AHDIAELVMKCLEDFECVGKVVAQCYDGAAVMASGLNGVQAKVKEKIPQALFIHC 338
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000044961.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000032.1:419978:423709:1 gene:ENSAMXG00000036481.1 transcript:ENSAMXT00000044961.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 55.0694 bits (131), Expect = 3.494e-8 Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 3 Query: 45 HLENSSANAICTSD*IQNEIISAF-NEIILQSC*KDK*K*MFSVVSNETSYISITEQVSIRARF--SDVENNLNENFLQFIPVTSTREE-LAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILE 431 ++N A S IQNEII+ N+++ + + + +SV+ + T IS EQ+S+ R D ++ E+F FI V T + L +LD L NL + RGQ YD + ++G G+QA+IL+ Sbjct: 266 RIQNQEAKVHYLSGTIQNEIIALIGNKVLEEIVRRAQRAKYYSVIMDCTPDISHKEQLSVVLRLVNCDPSVSIAEHFFGFIDVEDTSGKGLTEVLLDHLQKHNLSISDCRGQSYDNGSNMMGQKQGVQARILQ 398
BLAST of TTF-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000028133.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948955]) HSP 1 Score: 54.6842 bits (130), Expect = 5.868e-8 Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 3 Query: 90 IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDV--ENNLNENFLQFIPVT-STREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEK 434 +QNE+I + IL + D K FS++ + T IS TEQ+S+ R + + + E+F+ F+ ST + LA IL+ L + + RGQ YD A + G G+QA++LEK Sbjct: 339 VQNELIDLLSSKILSAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLMEKPQIREHFMGFLEAEESTGQHLASMILNRLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEK 457
BLAST of TTF-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000042294.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:110016639]) HSP 1 Score: 54.6842 bits (130), Expect = 5.868e-8 Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 3 Query: 90 IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDV--ENNLNENFLQFIPVT-STREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEK 434 +QNE+I + IL + D K FS++ + T IS TEQ+S+ R + + + E+F+ F+ ST + LA IL+ L + + RGQ YD A + G G+QA++LEK Sbjct: 339 VQNELIDLLSSKILSAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLMEKPQIREHFMGFLEAEESTGQHLASMILNRLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEK 457
BLAST of TTF-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000045044.1 (zinc finger MYM-type protein 1-like [Source:NCBI gene;Acc:111948193]) HSP 1 Score: 54.6842 bits (130), Expect = 5.868e-8 Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 3 Query: 90 IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDV--ENNLNENFLQFIPVT-STREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEK 434 +QNE+I + IL + D K FS++ + T IS TEQ+S+ R + + + E+F+ F+ ST + LA IL+ L + + RGQ YD A + G G+QA++LEK Sbjct: 339 VQNELIDLLSSKILSAIVDDIKKAKYFSIILDCTLDISHTEQLSVIIRVVSLMEKPQIREHFMGFLEAEESTGQHLASMILNRLEELGISFEDCRGQSYDNGANMKGKNKGVQARLLEK 457
BLAST of TTF-type domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000027735.1 (pep primary_assembly:ASM223467v1:9:30712608:30715295:1 gene:ENSORLG00000030268.1 transcript:ENSORLT00000027735.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.2914 bits (116), Expect = 2.911e-6 Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 3 Query: 66 NAICTSD*IQNEIISAFNEIILQSC*KD-K*K*MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTS-TREELAHSILDSLHSTNLDL-DYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQ-IREIRNYIEIFEKAFAFMSTT 545 NA C QNE+I E++ S + FS++ +ET +S EQ+S R+ ++ E FL F L+ I++ L LD +++ GQ YDGA+ + G G+QA+I + A + HC + + DS + I E + + +K + F+S + Sbjct: 279 NATCLGHDTQNEMIDCLAEMVRSSITGEVAESEAFSILVDETKDMSKKEQMSFVIRYY-YNGSVCECFLAFEAAQRLNAAALSQKIIEILQKHGLDYKNHLVGQAYDGASVMSGKNTGVQARIKSEAPLAFYVHCNAHCLNLVLVDSVKFIPEANCFFSLLQKLYVFVSGS 448
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Match: SMESG000003943.1 (SMESG000003943.1) HSP 1 Score: 137.117 bits (344), Expect = 5.197e-36 Identity = 84/191 (43.98%), Postives = 120/191 (62.83%), Query Frame = 3 Query: 39 KVHLENSSANAICTSD*IQNEIISAFNEIILQ---------SC*KDK*K*MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREE-LAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCT------SISDSCQIREIRNYIEIFEKAFAFMSTT*RNAV 560 K HL+NSS NA S IQNE I+A N+IIL+ C FSV+++ET+ +S EQ SI RF D + +NE+FLQF+PV T + L ++++ L S L+L Y++GQGYDGAAA+ G FN +QAKI++ + ++ HC S+SD CQI++IRN I + EK ++FM+T R+AV Sbjct: 1338 KEHLKNSSKNANYLSWKIQNENINACNQIILKRIVERANQSEC--------FSVLADETTDMSTQEQFSICIRFIDKDKKMNESFLQFVPVVRTSSKSLENTLVQFLSSIGLNLSYLKGQGYDGAAAMSGRFNRVQAKIMDLYPSTLYVHCASHSLNLSLSDVCQIQDIRNCIGVVEKCYSFMNTLKRDAV 1520
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Match: SMESG000008969.1 (SMESG000008969.1) HSP 1 Score: 67.3958 bits (163), Expect = 1.872e-12 Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 45 HLENSSANAICTSD*IQNEIISAFNEIILQSC*KDK*K*MF-SVVSNETSYISITEQVSIRARF----SDVENNLNENFLQFIPVTSTREE-LAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTA-VHHCTS---------ISDSCQIR 488 HL++ +NA S +QNE+I N+++ ++ +D K F S++++E+ I EQ+SI RF S E E FL F+P+ E ++ +I+ SL LDL + GQ Y G + + G +G++ +I ++ A +HC+S ++D C+IR Sbjct: 202 HLQSCPSNATYISHRVQNELIGICNDVLRENIIEDAKKSPFLSIIADESCDIYGIEQLSIGIRFINKMSTNEFCCREEFLGFVPLERMDAEYISETIISSLVKFGLDLSKMVGQAYYGCSTMAGKISGVKKRIQDQYPFANFYHCSSHRLNLVINDLNDVCEIR 365
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Match: SMESG000067013.1 (SMESG000067013.1) HSP 1 Score: 58.5362 bits (140), Expect = 8.951e-10 Identity = 38/142 (26.76%), Postives = 77/142 (54.23%), Query Frame = 3 Query: 162 MFSVVSNETSYISITEQVSIRARFSDVEN-NLNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYIEIFEKAFAFMSTT*RNAV 560 +FS+ +++TS + EQ++I + + + +NE+ L+F+P+ T ++ I+ ++ N+DL + Q Y GAA + G +G+ +I + +A++ HC S ++ SC I +++ E ++ F F +T R V Sbjct: 135 IFSIYADKTSIRANKEQLAIGVGYFNFDKLEINEDLLKFVPIIDETSNGISSKIMRTVQELNVDLSFCVRQCYGGAAVMKGEKSGVTRRIKDSFPSAIYIHCMSHCLNLALTYSCYIALLKSCTETIKQIFNFFNTPKRQQV 276
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Match: SMESG000067013.1 (SMESG000067013.1) HSP 1 Score: 52.7582 bits (125), Expect = 7.301e-8 Identity = 34/127 (26.77%), Postives = 67/127 (52.76%), Query Frame = 3 Query: 207 EQVSIRARFSDVEN-NLNENFLQFIPVTS-TREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILEKLQTAVH-HCTS------ISDSCQIREIRNYIEIFEKAFAFMSTT*RNAV 560 EQ++I + + + +NE+ L+F+P+ T ++ I+ ++ N+DL + Q Y GAA + G +G+ +I + +A++ HC S ++ SC I +++ E ++ F F +T R V Sbjct: 130 EQLAIGVGYFNFDKLEINEDLLKFVPIIDETSNGISSKIMRTVQELNVDLSFCVRQCYGGAAVMKGEKSGVTRRIKDSFPSAIYIHCMSHCLNLALTYSCYIALLKSCTETIKQIFNFFNTPKRQQV 256
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Match: SMESG000033201.1 (SMESG000033201.1) HSP 1 Score: 47.3654 bits (111), Expect = 2.840e-6 Identity = 28/89 (31.46%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 165 FSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELAHSILDSLHSTNLDLDYIRGQGYDGAAAILGTFNGLQAKILE 431 FS+ SN S IS T+Q++ + ++ E FL+F + T +IL++ + +D++ RGQ YD A+ + ++G+QA+I+E Sbjct: 21 FSIYSN--SDISHTDQLTFTVHYVKIDGQSVERFLKFQISSHTSLHQFDTILETFRALEIDINDCRGQTYDNASNMSKQYSGVQARIIE 107 The following BLAST results are available for this feature:
BLAST of TTF-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of TTF-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of TTF-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of TTF-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of TTF-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of TTF-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of TTF-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of TTF-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of TTF-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of TTF-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of TTF-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of TTF-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of TTF-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of TTF-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023460 ID=SMED30023460|Name=TTF-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=870bpback to top protein sequence of SMED30023460-orf-1 >SMED30023460-orf-1 ID=SMED30023460-orf-1|Name=SMED30023460-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=129bp MFSVVSNETSYISITEQVSIRARFSDVENNLNENFLQFIPVTSTREELAHback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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