SMED30023342

Overview
NameSMED30023342
Smed IDSMED30023342
Length (bp)414
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023342

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30023342 dd_Smed_v4_28437_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023342 dd_Smed_v4_28437_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30023342 dd_Smed_v4_28437_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30023342 vs. TrEMBL
Match: A0A183CIN3 (Reverse transcriptase domain-containing protein OS=Globodera pallida OX=36090 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.457e-14
Identity = 44/139 (31.65%), Postives = 77/139 (55.40%), Query Frame = -3 
Query:    5 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSE---SKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADS 412
            +S I+F + + P++ ++    V  +K+  S   VLAYADD+ALVA + ++LQR++D+    A   G  +   KCA LDL     +   ++ S+   +   L  ++FY +LGVP G    QS  ++L ++ +  +K+  S
Sbjct:  692 LSPIIFNLGLEPIIRAIRCQGVG-YKLHGSQTSVLAYADDLALVAESAAELQRMLDVTSKVATWEGLSFNARKCATLDLNGKRKDALNTEFSVQNAHPPVLTIEQFYDHLGVPTGYGVAQSANKVLERMNNHVQKINTS 829
[Close]
BLAST of SMED30023342 vs. TrEMBL
Match: U4USZ6 (Reverse transcriptase domain-containing protein (Fragment) OS=Dendroctonus ponderosae OX=77166 GN=D910_01513 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.911e-13
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = -3 
Query:   17 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSE---SKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKK 412
            +S I+F +AI P+L +++      +++    ++ LAYADD+A++A N SDLQR++D   + AN  G  +   KCA L +     +   +  +I G     L   E Y++LGVP G     S  E+L  +  + +K
Sbjct:  615 LSPIIFNLAIEPILHAITACG-GGYRLMGKKINSLAYADDMAIIAENPSDLQRLLDTTTEMANWAGLSFNTKKCATLHIDGRRKQAITTAFNIQGGEPAILGEHELYEHLGVPTGYHTANSADEVLQAMSRNLEK 748
[Close]
BLAST of SMED30023342 vs. TrEMBL
Match: A0A164DQP7 (Reverse transcriptase domain-containing protein (Fragment) OS=Daphnia magna OX=35525 GN=APZ42_009871 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.129e-12
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = -3 
Query:   71 IAINPVLESVSRSNVKP-FKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDL-PNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEK 391
            +A  PV+ +  +SN+ P F +  S V   AYADDIA+V N+ S+LQ I+++   TAN +G ++   KCA L       SE++  I+   I+ L P +   YLG PIG K
Sbjct:    2 LASEPVVRA-GKSNINPGFLLFGSLVKTTAYADDIAVVTNSPSELQNILNVLTHTANTLGLQFNAGKCACLVFDKGKPSETQCRIDNQLIRFLGPDDQETYLGTPIGGK 109
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BLAST of SMED30023342 vs. TrEMBL
Match: A0A2A2JLL3 (Reverse transcriptase domain-containing protein OS=Diploscapter pachys OX=2018661 GN=WR25_19835 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.606e-11
Identity = 44/133 (33.08%), Postives = 72/133 (54.14%), Query Frame = -3 
Query:   23 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSE-SKISINGVNIKKLLPKEFYQYLGVP--IGEKPNQSLYEILNKVVSDA 412
            +S ILF +AI P+L +  +S+   + +   SV VLAYADD+AL+A++ +DLQ  ++     A++ G  ++P KCA L       + +   + G  +  L   + Y +LGVP  +    +QS  E+  K V  A
Sbjct:  578 LSPILFNLAIEPMLRAAQKSSAG-YSLYGHSVSVLAYADDVALIASDATDLQNALNDVSAAADRAGLRFKPAKCASLHFTKGKPKLTTFHVQGGRMPALEKFDAYTHLGVPTVVHSIASQSSREVAEKKVQRA 709
[Close]
BLAST of SMED30023342 vs. TrEMBL
Match: A0A0P5Q9W1 (Reverse transcriptase OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.335e-11
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = -3 
Query:   29 ISMILFAIAINPVLESVSRSNVKP-FKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNND-SESKISINGVNIKKLLPKEFYQYLGVPIGEK----PNQSLYEILNKVVS 412
            +S  +F +A  P++ +  +SN+ P F I  S V   AYADDIA+V N+  +LQ I+DI   TA+ +G ++   KCA L +     SE+   I    I+ L P +   YLG PIG K    P   L   L+K+ +
Sbjct:  713 LSSPIFNLASEPLVRA-GKSNINPGFLIFGSLVKTTAYADDIAVVTNSPDELQNILDILSLTADTLGLQFNAGKCACLVIDKGKPSEALCRIGTQPIRCLGPDDQETYLGTPIGGKLRFRPPTDLIPNLDKIAA 845
[Close]
BLAST of SMED30023342 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.2098 bits (108), Expect = 2.472e-6
Identity = 31/117 (26.50%), Postives = 60/117 (51.28%), Query Frame = -3 
Query:   80 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKIS------INGVNIKKLLPKEFYQYLGVPI 412
            +S ILF +A++P+++S+       +KIG SSV  LA+ADD+ L++++   ++  I +  +   + G   +  KC    +    +   ++      + G  I  + P E  +YLGV +
Sbjct:  634 MSPILFNLAMDPLIQSLENLG-SGYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGATSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKV 749
[Close]
BLAST of SMED30023342 vs. Planmine SMEST
Match: SMESG000041246.1 (SMESG000041246.1)

HSP 1 Score: 211.846 bits (538), Expect = 2.425e-64
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            +S+ILFAIAINPVL++V+ S VKPFKIG+SS+ VLAYADDIAL+ANN  DLQ I++IA D A +IGFEYRP+ CAY+ LPN D+ S+ISIN +  KKLL KEFYQYLGVPIGE+PNQSLYEILNKVVSDAKKLAD D
Sbjct:  820 LSIILFAIAINPVLQAVTLSKVKPFKIGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPEMCAYIQLPNVDTISEISINNIKTKKLLSKEFYQYLGVPIGEQPNQSLYEILNKVVSDAKKLADFD 956

HSP 2 Score: 168.703 bits (426), Expect = 3.305e-49
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = -3 
Query:    5 FAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADS 397
            F   INPVLE++SRS ++PF IG S V VLAYADDIALVANNV +LQ+I+D+AV+ A +IGFEYRP+KC Y+ LP  +   +I IN   IKKLL KEFYQYLGVP+G+  +QS Y IL+KVVSD K +ADS
Sbjct:  357 FLDCINPVLEAISRSFIEPFMIGDSLVQVLAYADDIALVANNVENLQKIVDVAVEAATEIGFEYRPEKCGYMQLPRVNINGEILINEKEIKKLLSKEFYQYLGVPVGDDNDQSPYAILDKVVSDTKIIADS 487
[Close]
BLAST of SMED30023342 vs. Planmine SMEST
Match: SMESG000041246.1 (SMESG000041246.1)

HSP 1 Score: 211.846 bits (538), Expect = 2.482e-64
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            +S+ILFAIAINPVL++V+ S VKPFKIG+SS+ VLAYADDIAL+ANN  DLQ I++IA D A +IGFEYRP+ CAY+ LPN D+ S+ISIN +  KKLL KEFYQYLGVPIGE+PNQSLYEILNKVVSDAKKLAD D
Sbjct:  820 LSIILFAIAINPVLQAVTLSKVKPFKIGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPEMCAYIQLPNVDTISEISINNIKTKKLLSKEFYQYLGVPIGEQPNQSLYEILNKVVSDAKKLADFD 956

HSP 2 Score: 168.703 bits (426), Expect = 3.493e-49
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = -3 
Query:    5 FAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADS 397
            F   INPVLE++SRS ++PF IG S V VLAYADDIALVANNV +LQ+I+D+AV+ A +IGFEYRP+KC Y+ LP  +   +I IN   IKKLL KEFYQYLGVP+G+  +QS Y IL+KVVSD K +ADS
Sbjct:  357 FLDCINPVLEAISRSFIEPFMIGDSLVQVLAYADDIALVANNVENLQKIVDVAVEAATEIGFEYRPEKCGYMQLPRVNINGEILINEKEIKKLLSKEFYQYLGVPVGDDNDQSPYAILDKVVSDTKIIADS 487
[Close]
BLAST of SMED30023342 vs. Planmine SMEST
Match: SMESG000071441.1 (SMESG000071441.1)

HSP 1 Score: 195.667 bits (496), Expect = 2.055e-59
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            +SMILFAIAIN VL++V+ S VKPFKIG+SS+ VLAYADDIAL+ANN  DLQ I++IA D A +IGFEYRP+KCAY+ LPN D+ S+ISI  + IKKLL KEFYQYLGVPIGE+PNQS YEILNKVVSDAKKLADSD
Sbjct:  281 LSMILFAIAINSVLQAVTLSKVKPFKIGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPEKCAYIQLPNVDTISEISIINIKIKKLLSKEFYQYLGVPIGEQPNQSPYEILNKVVSDAKKLADSD 417
[Close]
BLAST of SMED30023342 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 190.66 bits (483), Expect = 6.828e-57
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFA+AINPVLE+VSRS+ +PF IG+S V +LAYADDIAL+A +V DLQ+I +IAV TA +IGFEYRP+KC YL LP    +S+I IN   IKKLL KEFYQYLGVP+GE+P+QS Y+IL+K VSD +KLA+S+
Sbjct: 3268 ISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSE 3404

HSP 2 Score: 190.66 bits (483), Expect = 6.828e-57
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFA+AINPVLE+VSRS+ +PF IG+S V +LAYADDIAL+A +V DLQ+I +IAV TA +IGFEYRP+KC YL LP    +S+I IN   IKKLL KEFYQYLGVP+GE+P+QS Y+IL+K VSD +KLA+S+
Sbjct: 5624 ISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSE 5760

HSP 3 Score: 182.185 bits (461), Expect = 6.327e-54
Identity = 90/137 (65.69%), Postives = 109/137 (79.56%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFAIAINPVLE++S SN  PF IG SSV VLAYADDIAL+A N SDLQ + D+AV+TAN IGFEYRP+KCAY+  P  ++ S+I +N V IKKL   EFYQYLGVPIG+  +QS YEI++KV+ D KK+A S+
Sbjct:  949 ISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSN 1085
[Close]
BLAST of SMED30023342 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 190.66 bits (483), Expect = 6.961e-57
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFA+AINPVLE+VSRS+ +PF IG+S V +LAYADDIAL+A +V DLQ+I +IAV TA +IGFEYRP+KC YL LP    +S+I IN   IKKLL KEFYQYLGVP+GE+P+QS Y+IL+K VSD +KLA+S+
Sbjct: 3239 ISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSE 3375

HSP 2 Score: 190.66 bits (483), Expect = 6.961e-57
Identity = 92/137 (67.15%), Postives = 114/137 (83.21%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFA+AINPVLE+VSRS+ +PF IG+S V +LAYADDIAL+A +V DLQ+I +IAV TA +IGFEYRP+KC YL LP    +S+I IN   IKKLL KEFYQYLGVP+GE+P+QS Y+IL+K VSD +KLA+S+
Sbjct: 5566 ISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSE 5702

HSP 3 Score: 182.185 bits (461), Expect = 6.387e-54
Identity = 90/137 (65.69%), Postives = 109/137 (79.56%), Query Frame = -3 
Query:    2 ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSDLQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLPKEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD 412
            ISMILFAIAINPVLE++S SN  PF IG SSV VLAYADDIAL+A N SDLQ + D+AV+TAN IGFEYRP+KCAY+  P  ++ S+I +N V IKKL   EFYQYLGVPIG+  +QS YEI++KV+ D KK+A S+
Sbjct:  949 ISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSN 1085
The following BLAST results are available for this feature:
BLAST of SMED30023342 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A183CIN34.457e-1431.65Reverse transcriptase domain-containing protein OS... [more]
U4USZ67.911e-1331.85Reverse transcriptase domain-containing protein (F... [more]
A0A164DQP74.129e-1239.45Reverse transcriptase domain-containing protein (F... [more]
A0A2A2JLL31.606e-1133.08Reverse transcriptase domain-containing protein OS... [more]
A0A0P5Q9W16.335e-1136.57Reverse transcriptase OS=Daphnia magna OX=35525 PE... [more]
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BLAST of SMED30023342 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSAMXT00000034560.12.472e-626.50pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of SMED30023342 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023342 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000041246.12.425e-6474.45SMESG000041246.1[more]
SMESG000041246.12.482e-6474.45SMESG000041246.1[more]
SMESG000071441.12.055e-5975.18SMESG000071441.1[more]
SMESG000021486.16.828e-5767.15SMESG000021486.1[more]
SMESG000021486.16.961e-5767.15SMESG000021486.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023342 ID=SMED30023342|Name=SMED30023342|organism=Schmidtea mediterranea sexual|type=transcript|length=414bp
AATCGGAATCCGCTAGCTTTTTCGCATCACTGACAACCTTATTCAAGATT
TCATAAAGACTTTGGTTAGGTTTCTCACCTATTGGAACTCCAAGATATTG
ATAAAATTCCTTTGGCAACAGTTTTTTGATATTTACACCATTGATCGAGA
TTTTACTTTCAGAGTCGTTATTTGGAAGATCAAGGTAAGCACATTTATCA
GGTCGATATTCGAAACCTATTTGATTAGCAGTATCAACAGCAATGTCAAT
AATACGTTGCAAGTCAGAAACATTATTAGCAACAAGTGCGATATCATCAG
CATATGCAAGTACATGAACAGAAGATTGGCCAATTTTGAAAGGTTTAACA
TTCGAACGACTTACAGATTCAAGAACTGGATTGATCGCAATTGCAAACAA
GATCATTGAAATAG
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protein sequence of SMED30023342-orf-1

>SMED30023342-orf-1 ID=SMED30023342-orf-1|Name=SMED30023342-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=137bp
ISMILFAIAINPVLESVSRSNVKPFKIGQSSVHVLAYADDIALVANNVSD
LQRIIDIAVDTANQIGFEYRPDKCAYLDLPNNDSESKISINGVNIKKLLP
KEFYQYLGVPIGEKPNQSLYEILNKVVSDAKKLADSD
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom