Transposon Ty3-I Gag-Pol polyprotein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023331 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 23
Homology
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 284.263 bits (726), Expect = 1.101e-89 Identity = 177/449 (39.42%), Postives = 263/449 (58.57%), Query Frame = 1 Query: 4447 KRIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPS-------IQTNNVTDIIPAIIEHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEIC-KTRQAQISH 5766 +RIKD++ DIEE + +L F+LQ+DES D+S A LL VR+ I L C L + TG++IFNCI ++++K +I W+ CV +C+D ++ G I VTL+K P S+HC L+ L K +P +LK+ LD+ VQI+NYIK+RP Q+R+ K L M A++ +LLL+TE+R LSRGKVL RL EL+ ELL + + + N W +LAYLADIF LN VN S+QGKN + T DK+ + +K+ +W + + + N D FP+ I + DI AI++HL L + YF + ++ W+RNPF ++ E +I L+++ +K F+++S FW + +E+PS++++A+ + L F+T +LCE GFS KTK R+RL D MR+ +S I PNI IC K Q SH Sbjct: 250 RRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAVDGKIAEAVTLIKYVAPESTSSHCLLYRHALAVKIMPTSLKNVLDQAVQIINYIKARPHQSRLLKILCEEMGAQHTALLLNTEVRWLSRGKVLVRLFELRRELLVFMDSAF--RLSDCLTNSSWLLRLAYLADIFTKLNEVNLSMQGKNVTVFTVFDKMSSLLRKLEFWASSVEEEN-FDCFPTLSDFLTEINSTVDKDICSAIVQHLRGLRATLLKYF-PVTNDNNAWVRNPFTVTVKPASLVARDYESLIDLTSDSQVKQNFSELSLNDFWSSLIQEYPSIARRAVRVLLPFATMHLCETGFSYYAATKTKYRKRL-DAAPHMRIRLSNITPNIKRICDKKTQKHCSH 693 HSP 2 Score: 69.3218 bits (168), Expect = 1.101e-89 Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLGM----QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEIV 4378 R+Y + Y+SFGF + ++ P +CV+C LSNS++ P+KL RH HA K+ +FK+ L + K T ++ A ASY IAL + HTI E LI P ++V Sbjct: 108 RKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVV 226
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 284.263 bits (726), Expect = 1.101e-89 Identity = 177/449 (39.42%), Postives = 263/449 (58.57%), Query Frame = 1 Query: 4447 KRIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPS-------IQTNNVTDIIPAIIEHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEIC-KTRQAQISH 5766 +RIKD++ DIEE + +L F+LQ+DES D+S A LL VR+ I L C L + TG++IFNCI ++++K +I W+ CV +C+D ++ G I VTL+K P S+HC L+ L K +P +LK+ LD+ VQI+NYIK+RP Q+R+ K L M A++ +LLL+TE+R LSRGKVL RL EL+ ELL + + + N W +LAYLADIF LN VN S+QGKN + T DK+ + +K+ +W + + + N D FP+ I + DI AI++HL L + YF + ++ W+RNPF ++ E +I L+++ +K F+++S FW + +E+PS++++A+ + L F+T +LCE GFS KTK R+RL D MR+ +S I PNI IC K Q SH Sbjct: 250 RRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAVDGKIAEAVTLIKYVAPESTSSHCLLYRHALAVKIMPTSLKNVLDQAVQIINYIKARPHQSRLLKILCEEMGAQHTALLLNTEVRWLSRGKVLVRLFELRRELLVFMDSAF--RLSDCLTNSSWLLRLAYLADIFTKLNEVNLSMQGKNVTVFTVFDKMSSLLRKLEFWASSVEEEN-FDCFPTLSDFLTEINSTVDKDICSAIVQHLRGLRATLLKYF-PVTNDNNAWVRNPFTVTVKPASLVARDYESLIDLTSDSQVKQNFSELSLNDFWSSLIQEYPSIARRAVRVLLPFATMHLCETGFSYYAATKTKYRKRL-DAAPHMRIRLSNITPNIKRICDKKTQKHCSH 693 HSP 2 Score: 69.3218 bits (168), Expect = 1.101e-89 Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLGM----QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEIV 4378 R+Y + Y+SFGF + ++ P +CV+C LSNS++ P+KL RH HA K+ +FK+ L + K T ++ A ASY IAL + HTI E LI P ++V Sbjct: 108 RKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVV 226
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 261.536 bits (667), Expect = 3.916e-85 Identity = 173/454 (38.11%), Postives = 269/454 (59.25%), Query Frame = 1 Query: 4447 KRIKDMSHDIEE--IVNYKLSKKYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYL-EKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSIQT-----NNVTDII---PAIIEHLTILDEIIACYFSSLKLESYD--WIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSN-EHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTRQAQISH 5766 +RI+++++D+E+ I KL+K YF+LQ+DE DI++ LL VRF +++I +F L +TT +++ + Y+ K + + FCVG+C+DG SM G VT +KE P +THCF+H E L K + L S L+ +V+IVNYIKS L +R+F L +M+A ++ LLLH EIR LSRGKVL R+ E+++ELL + Q + + F++ W A+LAYL+DIF N +N S+QGKN + DK+ +K+ WKNRI+ + DMF ++ T N DI I EHLT L E YF S + WI+NPF + + + +++++ L+T+ LK+ F ++ FWI + ++P L++ A+ + L F ++YLCE GFSTL+ IKTK R L ++ +RVA+S I+P + ++ +QA +SH Sbjct: 725 RRIQELANDMEDQLIEQIKLAK-YFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADHKQLLLHAEIRWLSRGKVLSRMFEIRNELLVFLQG-KKPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQGKNATYFSMADKVEGQKQKLEAWKNRIS-TDCYDMFHNLTTIINEVGNDLDIAHLRKVISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSKDNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAKNDYPELAEIALKLLLLFPSTYLCETGFSTLSVIKTKHRNSL-NIHYPLRVALSSIQPRLDKLTSKKQAHLSH 1174 HSP 2 Score: 73.1738 bits (178), Expect = 3.916e-85 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRL---LGMQAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLI 4354 R+Y YI FGF + E P+C++CG L+N AM P+KL RH + H + S+ ++F+R L Q KQ I+ A ASYK +A P+TIAE+L+ Sbjct: 584 RKYDPSYIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLV 693 HSP 3 Score: 25.0238 bits (53), Expect = 3.916e-85 Identity = 9/25 (36.00%), Postives = 18/25 (72.00%), Query Frame = 3 Query: 4377 LKIMFGDAKNEIMKIPLSNDTIKKK 4451 L+++ A ++ ++PLSNDTI ++ Sbjct: 702 LEMLGESAAKKVAQVPLSNDTIARR 726
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 261.536 bits (667), Expect = 4.110e-85 Identity = 173/454 (38.11%), Postives = 269/454 (59.25%), Query Frame = 1 Query: 4447 KRIKDMSHDIEE--IVNYKLSKKYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYL-EKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSIQT-----NNVTDII---PAIIEHLTILDEIIACYFSSLKLESYD--WIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSN-EHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTRQAQISH 5766 +RI+++++D+E+ I KL+K YF+LQ+DE DI++ LL VRF +++I +F L +TT +++ + Y+ K + + FCVG+C+DG SM G VT +KE P +THCF+H E L K + L S L+ +V+IVNYIKS L +R+F L +M+A ++ LLLH EIR LSRGKVL R+ E+++ELL + Q + + F++ W A+LAYL+DIF N +N S+QGKN + DK+ +K+ WKNRI+ + DMF ++ T N DI I EHLT L E YF S + WI+NPF + + + +++++ L+T+ LK+ F ++ FWI + ++P L++ A+ + L F ++YLCE GFSTL+ IKTK R L ++ +RVA+S I+P + ++ +QA +SH Sbjct: 876 RRIQELANDMEDQLIEQIKLAK-YFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKHSEVVTQIKELAPECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADHKQLLLHAEIRWLSRGKVLSRMFEIRNELLVFLQG-KKPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQGKNATYFSMADKVEGQKQKLEAWKNRIS-TDCYDMFHNLTTIINEVGNDLDIAHLRKVISEHLTNLLECFEFYFPSKEDPRIGNLWIQNPFLSSKDNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAKNDYPELAEIALKLLLLFPSTYLCETGFSTLSVIKTKHRNSL-NIHYPLRVALSSIQPRLDKLTSKKQAHLSH 1325 HSP 2 Score: 73.1738 bits (178), Expect = 4.110e-85 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKR---LLGMQAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLI 4354 R+Y YI FGF + E P+C++CG L+N AM P+KL RH + H + S+ ++F+R L Q KQ I+ A ASYK +A P+TIAE+L+ Sbjct: 735 RKYDPSYIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLV 844 HSP 3 Score: 25.409 bits (54), Expect = 4.110e-85 Identity = 9/25 (36.00%), Postives = 18/25 (72.00%), Query Frame = 3 Query: 4377 LKIMFGDAKNEIMKIPLSNDTIKKK 4451 L+++ A ++ ++PLSNDTI ++ Sbjct: 853 LEMLGESAAKKVAQVPLSNDTIARR 877
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Match: ZBED8 (zinc finger BED-type containing 8 [Source:HGNC Symbol;Acc:HGNC:30804]) HSP 1 Score: 250.366 bits (638), Expect = 7.525e-77 Identity = 163/442 (36.88%), Postives = 246/442 (55.66%), Query Frame = 1 Query: 4450 RIKDMSHDIEEIV--NYKLSKKYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSIQTNNVTD-----IIPAIIEHLTILDEIIACYFSSLKL-ESYDWIRNPF-GTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTR 5748 RI +MS DI + V + K S +Q+ E+ D+ +QL+A VR+I E EIV +FL C L G D+FN + K +I+ D C +CTDG SM G V VK++ P+I+ THC L+ LV KTLP L+ AL VV+++N+IK R R+F+ + +Y LL HTE+R LSRG++L + E+ +E+ + + + N V FEN + LAYLAD+FK+LN ++ S+Q N +++ +K+ AF +K +W+ RI K N + FP ++ V+D I I HL L YFS L E+ WI +PF +F + ++ + ++ + L MEF M E FW P+L+K A+ I + F+T+YLCELGFS+L + KTK R +L +++RVAIS P +I + + Sbjct: 149 RIDEMSQDILQQVLEDIKASPLKVGIQLAETTDMDDCSQLMAFVRYIKEREIVEEFLFCEPLQLSMKGIDVFNLFRDFFLKHKIALDVCGSVCTDGASSMLGENSEFVAYVKKEIPHIVVTHCLLNPHALVIKTLPTKLRDALFTVVRVINFIKGRAPNHRLFQAFFEEIGIEYSVLLFHTEMRWLSRGQILTHIFEMYEEINQFLHHKSSN-LVDGFENKEFKIHLAYLADLFKHLNELSASMQRTGMNTVSAREKLSAFVRKFPFWQKRIEKRNFTN-FPFLEEIIVSDNEGIFIAAEITLHLQQLSNFFHGYFSIGDLNEASKWILDPFLFNIDFVDDSYLMKNDLAELRASGQIL-MEFETMKLEDFWCAQFTAFPNLAKTALEILMPFATTYLCELGFSSLLHFKTKSRSCF-NLSDDIRVAISKKVPRFSDIIEQK 586 HSP 2 Score: 60.4622 bits (145), Expect = 7.525e-77 Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 2 Query: 4022 MKTNRQYSDEYISFGFAWTDEKE-CPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLG--MQAKQFK--GAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEIVK 4381 M R++ D+Y+ + F T E + P+CV+C SN+ + P+KL+ HF H + + + K + Q++ K G + D ASY+ L A + PHT+AE L+ P EI + Sbjct: 1 MSKKRKWDDDYVRYWFTCTTEVDGTQRPQCVLCNSVFSNADLRPSKLSDHFNRQHGGVAGHDLNSLKHMPAPSDQSETLKAFGVASHEDTLLQASYQFAYLCAKEKNPHTVAEKLVKPCALEIAQ 125
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Match: CNBP (gene:FBgn0034802 transcript:FBtr0303464) HSP 1 Score: 60.8474 bits (146), Expect = 6.340e-10 Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 274 EESIRREMPECWLCHKIGHTKIDCP------IKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQE 477 ++ + + P C+ C+K GH +CP + C+ C+R+GHIS+NCP+ + C+GCGK GH+RR C E Sbjct: 88 KDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPE-TSKTCYGCGKSGHLRRECDE 160 HSP 2 Score: 52.7582 bits (125), Expect = 3.037e-7 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 283 IRREMPECWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQE---------IRCERCSRNGHRSEEC--YTKMRYG 546 +RR +C+ C++ GH CP + + C+ C+ GHIS++C P C+ C K GH R C E + C +C+R GH S+ C +K YG Sbjct: 50 MRRNREKCYKCNQFGHFARACPEEAE-RCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYG 147 HSP 3 Score: 51.6026 bits (122), Expect = 7.945e-7 Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1 Query: 283 IRREMPE----CWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCP---DKKAP---RCFGCGKEGHIRRLCQEIR--CERCSRNGHRSEEC 525 R PE C+ C+ IGH DC C+ C+++GH RNCP +++ P C+ C + GHI + C E C C ++GH EC Sbjct: 66 FARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Match: CNBP (gene:FBgn0034802 transcript:FBtr0071994) HSP 1 Score: 60.8474 bits (146), Expect = 6.340e-10 Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 274 EESIRREMPECWLCHKIGHTKIDCP------IKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQE 477 ++ + + P C+ C+K GH +CP + C+ C+R+GHIS+NCP+ + C+GCGK GH+RR C E Sbjct: 88 KDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPE-TSKTCYGCGKSGHLRRECDE 160 HSP 2 Score: 52.7582 bits (125), Expect = 3.037e-7 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 1 Query: 283 IRREMPECWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQE---------IRCERCSRNGHRSEEC--YTKMRYG 546 +RR +C+ C++ GH CP + + C+ C+ GHIS++C P C+ C K GH R C E + C +C+R GH S+ C +K YG Sbjct: 50 MRRNREKCYKCNQFGHFARACPEEAE-RCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYG 147 HSP 3 Score: 51.6026 bits (122), Expect = 7.945e-7 Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1 Query: 283 IRREMPE----CWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCP---DKKAP---RCFGCGKEGHIRRLCQEIR--CERCSRNGHRSEEC 525 R PE C+ C+ IGH DC C+ C+++GH RNCP +++ P C+ C + GHI + C E C C ++GH EC Sbjct: 66 FARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX546500.1 (pep chromosome:GRCz11:23:12926092:12931693:-1 gene:ENSDARG00000086495.3 transcript:ENSDART00000122176.3 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX546500.1) HSP 1 Score: 344.739 bits (883), Expect = 1.289e-96 Identity = 221/749 (29.51%), Postives = 374/749 (49.93%), Query Frame = 3 Query: 1479 IEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGR--RFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPV----KRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQF----RTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSK-EIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQ-DRY 3662 +E+ I + IIR +SP V KK+ +R C+D+R LN++T + +P+P + + L G+ FF+ +DL NAY+ V + + KTAF+T G + + +PFG++ AP FQ ++ VL + + VYLDDILI+S S ++H + VL+ + E GL + EKC + ++FLGHI+S EG++ DP KIQA+ ++ P+ K L+ FLG N+YRRFI ++++ A L L S S WS + F LK +APIL PD ++F+++ DAS +GA+LSQR DGK AY SH ++ E+ Y I +ELLAV ++H+L G F + TDHK + ++ + K+ + S+ W + + + YR G + D +SR D + +G + + I R+ + +G+ + + +PE + ++ H ++ CH GV + +K R+ + +++ V +C +C +K+ + + P + I +D L + G +L ++D++SK ++ K + + R G P ++ D G F S REF ++L + SS +H Q+NGQ ER RT+R L++ + + W++ L VE+ N+ +TG SP + G + S+ +P ++ RR +N + L++V TR K + DR+ Sbjct: 514 MEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTSLTS--SKMPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYFSHRLSPAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIRSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRL-FDPSDRLSSPDPVLPQGIVVANISWEIESRVRTAL-NGVTPPIGCPPSRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVIKQRFWWPTMARDVRDFVLACSVCAVSKS---SNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSSNG-NTVVLTVVDRFSKAAHFISLPKLPSARETAVAVIDHVFRIHGLPTDVVSDRGPQFVSRFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVS-----QNPSSWSQQLSWVEYAHNSLPVSSTGLSPFQCSLGYQPPVFPSLESEVAVPSVHAFVQRCRRTWNRARQTLLRVGTRTKAKADRH 1247
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511082.1 (pep chromosome:GRCz11:9:14291932:14297132:1 gene:ENSDARG00000113678.1 transcript:ENSDART00000183119.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511082.1) HSP 1 Score: 345.51 bits (885), Expect = 1.782e-96 Identity = 264/956 (27.62%), Postives = 444/956 (46.44%), Query Frame = 3 Query: 897 SITVRMNGENFD--CLLDTGARINVMSVNCFNKLRGQQLTKSDD-KLRCANESTIETI----GKTKVQVTIGNVSKEVIFIVAE-KVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEA--KFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGR--RFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGK---IKTRL-LDSIREEGRSNIQ---HGIVEE---VRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPV----KRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSK-EIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQ-DRY 3662 ++ + + NF ++D+GA N + KLR ++ S + N S++ +I G ++ +T GN S+ + F + E VTP V+G L + + + + + + C + A R + EE + L + E LK + + S + R + +++ P K Y + +E+ I + IIR +SP V KK+ +R C+D+R LNA+T + +P+P + + L G+ FF+ +DL NAY+ V + E + KTAF+T G + + +PFG++ AP FQ ++ VL + + VYLDDILI+S S ++H + VL+ + E GL + EKC + + FLGHI+S EG++ DP K+QA+ ++ P+ K L+ FLG N+YRRFI ++++ A L L S WS F+ LK +APIL PD ++F+++ DAS +GA+LSQR DGK AY SH + + E+ Y I +ELLAV ++H+L G F + TDHK + ++ + K+ + S+ W + D + YR G + D +SR H E + RL + ++ E S ++ G+ + +PE + I+ H +L CH GV + +K R+ + I+ V +C +C +K + + P + I +D L + G IL ++D++SK + K + + R G P ++ D G F S REF ++ + SS +H Q+NGQ ER + + ++ L + + W++ L VE+ N+ TG SP E G + S+ +P ++ RR +N + L++V R K + DR+ Sbjct: 344 NVMLEWSSGNFSTQAIIDSGAEGNFIDSALVKKLRLPVISLSQPISVHALNGSSLPSITHSTGPIRL-ITSGNHSEIIHFFLTEAPVTPVVLGHPWLVIHNPHINWRQESVISWSESCHATCLLSACSSVSRSVFQEEHM--DLSNVP-KEYLDLKRVFSKSRAASLPPH----RPYDCAIELLPGTSPPKGKLYSLSVPEREAMEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNAITVKNTYPLPLMSSAFERLQGASFFTKLDLRNAYHLVRIREGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMLDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGMRMDPEKVQAVVDWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTS--LKTPFRWSNAAQVAFDRLKSCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSSSDGKMHPCAYFSHRLNNAEQNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIQSAKR-LNSRQARWALFFGRFDFSISYRPGSKNVKPDALSRI---------FDHSERASSPETIVPRRLFISAVTWEIESRVRMALEGVTPPPGCPPSRLFVPEELRSDVIRWGHSSKLACHPGVSRTLYLIKQRFWWPVMARDIRNFVLACSVCAVSKT---SNRPPAGLLQPLSVPSRPWSHIALDFVTGLPPSNG-NTVILTVVDRFSKATHFIPLPKLPSARETAAAVIDHVFRIHGLPTDVVSDRGPQFISKFWREFCHLMGATVSLSSGFHPQSNGQTERANQDLERMLRC-LVSQNPSSWSQQLSWVEYAHNSLPVSATGLSPFECSLGYQPPAFPSLESEVAVPSAHAFVQRCRRTWNRARQTLLQVGLRTKAKADRH 1273
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: BX511224.1 (pep chromosome:GRCz11:2:18017000:18022765:1 gene:ENSDARG00000113243.1 transcript:ENSDART00000186877.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX511224.1) HSP 1 Score: 337.806 bits (865), Expect = 6.351e-94 Identity = 221/749 (29.51%), Postives = 370/749 (49.40%), Query Frame = 3 Query: 1479 IEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRD-KDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGR--RFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPV----KRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQF----RTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSK-EIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQ-DRY 3662 +E+ I + IIR +SP V KK+ +R C+D+R LN++T + +P+P + + L G+ FF+ +DL NAY+ V + + KTAF+T G + + +PFG++ AP FQ ++ VL + + VYLDDILI+S S ++H + VL+ + E GL + EKC + ++FLGHI+S EG++ DP KIQA+ N+ P+ K L+ FLG N+YRRFI ++++ A L L S S WS + F LK +APIL PD ++F+++ DAS +GA+LSQR DGK AY SH ++S E+ Y I +ELLAV ++H+L G F + TDHK + ++ + K+ + S+ W + + + YR G + D +SR D + + + + I R+ + G+ + + +PE + ++ H ++ CH GV + +K R+ + +++ V +C +C +K+ + + P + I +D L + G IL ++D++SK ++ K + + R G P ++ D G F S REF ++L + SS +H Q+NGQ ER RT+R L++ + + W++ L VE+ N+ TG S + G + S+ +P ++ RR +N + L++ TR K + DR+ Sbjct: 540 MEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVCIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHIQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHIVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIHNFSQLAAPLTSLTS--SKTPFRWSSAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDASEVGVGAILSQRSASDGKVHPCAYFSHRLSSAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRL-FDPSDRTSSPDPVLPQRIVVANISWEIESRVRTALD-GVTPPIGCPPNRLFVPEELRSDVVRWGHSSKVACHPGVSRTLFVVKQRFWWPAMARDVRDFVLACSVCAVSKS---SNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSSNG-NTVILTVVDRFSKAAHFISLPKLPSARETAVAVIDHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVS-----QNPSSWSQQLSWVEYAHNSLPVSATGLSSFQCSLGYQPPVFPSLDSEVAVPSVHAFVQRCRRTWNRARQTLLQAGTRTKAKADRH 1273
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR855320.1 (pep chromosome:GRCz11:1:7956030:7961696:1 gene:ENSDARG00000099359.2 transcript:ENSDART00000159655.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR855320.1) HSP 1 Score: 336.265 bits (861), Expect = 2.017e-93 Identity = 219/737 (29.72%), Postives = 364/737 (49.39%), Query Frame = 3 Query: 1515 IIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGR--RFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPV----KRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQF----RTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSK-EIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQ-DRY 3662 IIR +SP V KK+ +R C+D+R LN +T + +P+P + + L G+ FF+ +DL NAY+ V + + K+AF+T G + + +PFG++ AP FQ + VL + + VYLDDILI+S S ++H + VL+ + E GL + EKC + + FLGHI+S EG++ DP KI+A+ N+ P+ K L+ FLG N+YRRFI ++++ A L L S S WS + F LK +APIL PD ++F+++ DAS +GA+LSQR DGK AY SH +++ E Y I +ELLAV ++H+L G F + TDHK + ++ + K+ + S+ W + + + YR G + D +SR D+ + K + + + I + R+ + G+ + + +PE + I+ H ++ CH GV + + +K R+ L +++ V +C +C +K + + P + I +D L + G IL ++D++SK + K + + R G P ++ D G F S REF ++L + SS +H Q+NGQ ER RT+R L++ + + W++ L VE+ N+ TG SP + G + S+ +P ++ RR ++ + L++V R K + DR+ Sbjct: 554 IIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNNITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRAGDEWKSAFNTPRGHFEYCVLPFGLSNAPAVFQAFVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHIRRVLQRLLENGLYVKAEKCVFHAQSVPFLGHIVSVEGLRMDPEKIKAVVNWPTPDSRKALQRFLGFANFYRRFIRNFSQLAAPLTALTS--SKTPFRWSSAAEAAFSKLKGCFVSAPILITPDPSRQFVVEVDASEVGVGAILSQRSSSDGKIHPCAYYSHRLSAAESNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVWTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFTISYRPGSKNIKPDALSRL-FDSSERTSSLEPVVPKRIVISNITWEIESKVRAALD-GVTPPIGCPPSRLFVPEKLRSDVIRWGHSSKVACHPGVSRTSFVIKQRFWWPALARDVRDFVLACSVCAVSKT---SNRPPAGLLQPLSVPSRPWSHISLDFVTGLPPSNG-NTVILTVVDRFSKAAHFVPLPKLPSARETAVAVINHVFRIHGLPTDVVSDRGPQFISKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVS-----QNPSSWSQQLSWVEYAHNSLPVSATGLSPFQCSLGYQPPVFPSLESEVAVPSVHAFVQRCRRTWSRARQTLLQVGVRTKAKADRH 1275
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Match: CR925755.2 (pep chromosome:GRCz11:17:42486740:42492668:-1 gene:ENSDARG00000116402.1 transcript:ENSDART00000183946.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR925755.2) HSP 1 Score: 335.88 bits (860), Expect = 2.039e-93 Identity = 221/756 (29.23%), Postives = 370/756 (48.94%), Query Frame = 3 Query: 1479 IEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDK-DGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGR--RFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSR-------TKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEM----FEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQF----RTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSK-EIPIKEELEEQTRRKFNVGEEVLVKVETRHKGQ-DRY 3662 +E+ I + IIR +SP V KK+ +R C+D+R LN++T + +P+P + + L G+ FF+ +DL NAY+ V + + KTAF+T G + + +PFG++ AP FQ ++ VL + + VYLDDILI+S S ++H + VL+ + E GL + EKC + ++FLGH +S EG++ DP KIQA+ N+ P+ K L+ FLG N+YRRFI ++ + A L L S S WS + F LK +APIL PD ++F+++ D S +GA+LSQR DGK AY SH +++ E+ Y I +ELLAV ++H+L G F + TDHK + ++ + K+ + S+ W + + + YR G + D +SR T V Q +I++R+ ++ G+ + + +PE+ + I H ++ CH GV + +K R+ + +++ V +C +C +K+ + + P + + I +D L + G +L ++D++SK + K + + R G P ++ D G F S REF ++L + SS +H Q+NGQ ER RT+R L++ + + W++ L VE+ N+ TG SP + G + S+ +P ++ RR +N + L++V R K + DR+ Sbjct: 513 MEKYISDSLAAKIIRPSSSPAGAGFFFV-KKKDGSLRPCIDYRGLNSITVKNTYPLPLMSSAFERLQGANFFTKLDLRNAYHLVRIRPGDEWKTAFNTPRGHFEYCVLPFGLSNAPAVFQALVNDVLRDMIDQFIYVYLDDILIFSHSLQEHVQHVRRVLQRLLENGLYVKAEKCVFHAQSVQFLGHTVSVEGMRMDPEKIQAVVNWPTPDSRKALQRFLGFANFYRRFIRNFRQLAAPLTNLTS--SKTPFRWSNAAEAAFSKLKGCFVSAPILIAPDPSRQFVVEVDVSEVGVGAILSQRSALDGKIHPCAYFSHRLSAAERNYDIGNRELLAVKLALEEWRHWLEGSGVPFIVSTDHKNLEYIKSAKR-LNSRQARWALFFGRFNFSISYRPGSKNIKPDALSRLFDRSDRTSSPDPVLPQRVFVANISWEIESRVRTAL---------DGVTPPIGCPPSRLFVPEDLRSDVIWWGHSSKVACHPGVSRTLFVIKQRFWWPVMARDVRDFVLACSVCAASKS---SNRPPAGLLQPLSVPSRPWSHISLDFVTGLPSSNG-NTVVLTVVDRFSKAAHFVPLPKLPSARETAVAVIDHVFRIHGLPTDVVSDRGPQFVSKFWREFCRLLGATVSLSSGFHPQSNGQTERANQDLERTLRCLVS-----QNPSSWSQQLSWVEYAHNSLPVSATGLSPFQCSLGYQPPVFPSLESEVAVPSIHAFVQRCRRTWNRARQTLLQVGERTKAKADRH 1246
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: anxa6 (annexin A6 [Source:Xenbase;Acc:XB-GENE-989741]) HSP 1 Score: 327.791 bits (839), Expect = 4.475e-95 Identity = 167/464 (35.99%), Postives = 264/464 (56.90%), Query Frame = 3 Query: 1299 EQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGE-PINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVL-GKIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSR 2684 + L +++ +L++I+ + +F A+ GRTH +HK+ T + PI YR + +++ I + G+I +SPW +P++ V KK+ R C+D+R+LN VT A+PMP +DE+LD LG + + +++DL Y+Q+ L +QEK+AF T G Y F MPFG+ AP TFQ ++ ++L G A YLDDI ++S + E+H L V I++AGL + PEKC + E+++LGH + ++ DP+K++AI + P K++ +FLG YYR+FI +Y+ A+ L L S ++ + W+ S LK AL ++P+L PD + FIL TDAS +GAVLSQ + G+E +AY S + E Y KE LA+ + + YLYGR FT+ TDH ++++ + W L + +++RKG H NAD +SR Sbjct: 295 DHLHLSQQDQLRKILRSYSPMFSANP---GRTHWAEHKVDTGTQLPIRSPAYRVAEAVRPEMKSQIDEMLAFGVITPSHSPWASPVVLVPKKDGS-TRFCVDYRRLNDVTTTDAYPMPRVDELLDRLGNAKYLTTLDLSRGYWQIPLAPSAQEKSAFLTPFGLYQFTVMPFGMRNAPATFQRLVNRLLEGMQDFAQAYLDDIAVFSQTWEEHLQHLQRVFAQIQDAGLTLKPEKCHLAMAEVQYLGHRVGGGQLRPDPAKVEAICQWPIPKTQKQVLAFLGTSGYYRKFIPNYSTVAKPLTDLTSRQRSRTIVWTPECESAMNALKQALASSPVLAAPDFSRRFILQTDASNFGLGAVLSQVNTYGEEHPVAYLSRKLLPREAAYATIEKECLAIVWALQKLQPYLYGREFTVVTDHNPLSWLQRVSG-DNGKLLRWSLLLQQYNFTIQHRKGKEHHNADGLSR 753 HSP 2 Score: 101.293 bits (251), Expect = 1.038e-20 Identity = 70/234 (29.91%), Postives = 114/234 (48.72%), Query Frame = 3 Query: 3132 IDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISR------EKWYG---SKEIPI-------KEELEEQTR-----------------------RKFNVGEEVLVKVETRH-KGQDRYEGPYKVIEKVHDRRYIL 3713 +D ++Y A+ K D T+ +++ + R G P EI D G F S +++ + ++ SSPYH QTNG ER T++ ++ ++ +K DW LP + F Q++TG SP E+++G+++ E W G S+E+PI ++ LE+ T R+F G++VL+ V TRH K Q +EGPY V K+HD Y++ Sbjct: 1 MDYATRYPEAVALRKIDAPTVADALIQIFS-RVGFPSEILSDQGPQFTSQLLQCLWQRCGVRAIHSSPYHPQTNGLCERFNGTLKTMLRTFVESGEK-DWERYLPHLLFAYREVPQESTGFSPFELLYGRRVRGPLDLLCEYWEGAPQSQEVPIIPYVLKFRQRLEQMTSLAHDHLSAAQQRQKVWYDRKARERRFMEGDKVLLLVPTRHDKLQAAWEGPYVVTHKLHDTTYVV 232
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000035398.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:9869556:9871940:-1 gene:ENSXETG00000011182.1 transcript:ENSXETT00000035398.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 300.827 bits (769), Expect = 2.261e-86 Identity = 214/705 (30.35%), Postives = 326/705 (46.24%), Query Frame = 3 Query: 1473 SKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKD--IRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKK-ARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYG--RRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKA-----LTITTKEPVKRQDSKEMFEIIFVDI---CGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLIN---ATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK 3521 + ++E I + G IR SP V EKKD +R C+D+R LN +T + +P+P I E+ D L G+ FS +DL AY + + E + KTAF+T++G Y + MPFG+ AP FQE + + + K +VYLDDILI+S E H + + E L + E L EKC +I FLG+IIS G + DP+K+ AIQ + P K ++ F+G NYYR+FI ++ + A +L + G + W F+ LK A +A +L P+ F ++ DAS GA+LSQR DGK AY S +S E+ Y I +ELLAV ++H L G T+ TDHK + F+ + K+ Q W + S + YR G ++ AD +SR+ +I +L E+ + + +P +++ H + H G EK + ++ + +++ V +C +C TKA + PV + + V++ CG I +ID++SK + K + + I R G P EI D G F S R K L + L FSS YH QTNG ER + + + + QD DW+++LP EF N + +TG+SP V+G+ Sbjct: 16 AAMKEYISENLQRGFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKG--GRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQ-ARWSLFFSRFHFVLTYRPGTKNRKADALSRSFSPEDRLPIEREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSCG--------NTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQD----DWSDLLPWAEFAHNNARHSSTGRSPFLSVYGQ 702
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: castor1 (cytosolic arginine sensor for mTORC1 subunit 1 [Source:Xenbase;Acc:XB-GENE-960689]) HSP 1 Score: 308.531 bits (789), Expect = 2.589e-84 Identity = 259/966 (26.81%), Postives = 418/966 (43.27%), Query Frame = 3 Query: 930 DCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRC--------ANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDS--KLKEIITNSGNVFMADKWDVGRTH--------LVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKD--IRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKK-ARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYG--RRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKA-----LTITTKEPVKRQDSKEMFEIIFVDI---CGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLIN---ATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK-KISREKWYGSKEIPIKEELEEQTRRKFNVGEEVLVKVETRHKG-QDR---YEGPYKVIEKV 3692 LD+GA N M + F K G L +R + ++ T G+ VQ+ ++ K I+ +P V+G + + ++ +++ + + ++R L+++ ++ S L + + +VF + H L+ + RG + P + ++E I + G IR SP V EKKD +R C+D+R LN +T + +P+P I E+ D L G+ FS +DL AY + + E + KTAF+T++G Y + MPFG+ AP FQE + + + K +VYLDDILI+S E H + + E L + E L +KC +I FLG+IIS G + DP+K+ AIQ + P K ++ F+G NYYR+FI ++ + A +L + G + W F+ LK A +A +L P+ F ++ DAS GA+LSQR DGK AY S +S E+ Y I +ELLAV ++H L G T+ TDHK + F+ + K+ Q + W + S + YR G ++ AD +SR+ +I +L E+ + + +P +++ H + H G EK + ++ + +++ V +C +C TKA + PV + + V++ CG I +ID++SK + K + + I R G P EI D G F S R K L + L FSS YH QTNG ER + + + + QD DW+++LP EF N +TG+SP V+G+ ++ + + ++P ++L + + L K HK DR PYKV EKV Sbjct: 355 SAFLDSGAAGNFMDL-AFAKKVGISLFPVTPPIRVLAIDDRPLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLG--------------LPWLRLHNPSIDWSSGQISRWSQYCQRHCLILRPLQRVTVSSTSLSALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGIMPPRGRTYPLSPAE-----TAAMKEYISENLQRGFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKG--GRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQVR-WSLFFSRFHFVLTYRPGTKNRKADALSRSFSPEDRLPIEREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSCG--------NTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQD----DWSDLLPWAEFAHNNASHSSTGRSPFLSVYGQHPLAFPQDFLLSKVPAADDLAAHMSVIWAATKSNLEKSSLVHKTFADRRRKPSPPYKVGEKV 1282
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: lin54 (lin-54 DREAM MuvB core complex component [Source:Xenbase;Acc:XB-GENE-5752559]) HSP 1 Score: 308.916 bits (790), Expect = 2.600e-84 Identity = 263/966 (27.23%), Postives = 420/966 (43.48%), Query Frame = 3 Query: 930 DCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRC--------ANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDS--KLKEIITNSGNVFMADKWDVGRTH--------LVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKD--IRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKK-ARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYG--RRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKA-----LTITTKEPVKRQDSKEMFEIIFVDI---CGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLIN---ATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK-KISREKWYGSKEIPIKEELEEQTRRKFNVGEEVLVKVETRHKG-QDR---YEGPYKVIEKV 3692 LD+GA N M + F K G L +R + ++ T G+ VQ+ ++ K I+ +P V+G L+ L I+ S + ++ + + ++R L+++ ++ S L + + +VF + H L+ + RG + P + ++E I + G IR SP V EKKD +R C+D+R LN +T + +P+P I E+ D L G+ FS +DL AY + + E + KTAF+T++G Y + MPFG+ AP FQE + + + K +VYLDDILI+S E H + + E L + E L +KC +I FLG+IIS G + DP+K+ AIQ + P K ++ F+G NYYR+FI ++ + A +L + G + W F+ LK A +A +L P+ F ++ DAS GA+LSQR DGK AY S +S E+ Y I +ELLAV ++H L G T+ TDHK + F+ + K+ Q + W + S + YR G ++ AD +SR+ +I +L E+ + + +P +++ H + H G EK + ++ + +++ V +C +C TKA + PV + + V++ CG I +ID++SK + K + + I R G P EI D G F S R K L + L FSS YH QTNG ER + + + + QD DW+++LP EF N +TG+SP V+G+ ++ + + ++P ++L + + L K HK DR PYKV EKV Sbjct: 355 SAFLDSGAAGNFMDL-AFAKKVGISLFPVTPPIRVLAIDDRPLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLR-------LHNPSIDWSSGQIS-------RWSQYCQRHCLILRPLQRVTVSSTSLSALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGIMPPRGRTYPLSPAE-----TAAMKEYISENLQRGFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENSLFAKLDKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKGFSSRIAPILSLIRKG--GRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQAR-WSLFFSRFHFVLTYRPGTKNRKADALSRSFSPEDRLPIEREPIIPPSRIIASVLPQFAEQILLSQSAAPPDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLQRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPVPSRPWTHLGMDFIVELPPSCG--------NTVIWVVIDRFSKMAHFVPLRKLPSAVELAQLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQD----DWSDLLPWAEFAHNNASHSSTGRSPFLSVYGQHPLAFPQDFLLSKVPAADDLAAHMSVIWAATKSNLEKSSLVHKTFADRRRKPSPPYKVGEKV 1282
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Match: ENSXETT00000034712.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:33567219:33572531:-1 gene:ENSXETG00000011772.1 transcript:ENSXETT00000034712.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 308.531 bits (789), Expect = 2.602e-84 Identity = 265/978 (27.10%), Postives = 426/978 (43.56%), Query Frame = 3 Query: 900 ITVRMNGENF--DCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRC--------ANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDS--KLKEIITNSGNVFMADKWDVGRTH--------LVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKD--IRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKK-ARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQR-DKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYG--RRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKA-----LTITTKEPVKRQDSKEMFEIIFVDI---CGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLIN---ATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK-KISREKWYGSKEIPIKEELEEQTRRKFNVGEEVLVKVETRHKG-QDR---YEGPYKVIEKV 3692 + +R++ + LD+GA N M + F K G L +R + ++ T G+ VQ+ ++ K I+ +P V+G L+ L I+ S + ++ + + + + L+++ ++ S L + + +VF + H L+ + RG + P + ++E I + G IR SP V EKKD +R C+D+R LN +T + +P+P I E+ D L G+ FS +DL AY + + E + KTAF+T++G Y + MPFG+ AP FQE + + + K +VYLDDILI+S E H + + E L + E L EKC +I FLG+IIS G + DP+K+ AIQ + P K ++ F+G NYYR+FI D++ + A +L + G + W F+ LK A +A +L P+ F ++ DAS GA+LSQR DGK AY S +S E+ Y I +ELLAV ++H L G T+ TDHK + F+ + K+ Q + W + S + + YR G ++ AD +SR+ +I +L E+ + + +P +++ H + H G EK + ++ + +++ V +C +C TKA + P+ + + V++ CG I +ID++SK + K + + I R G P EI D G F S R K L + L FSS YH QTNG ER + + + + QD DW+++LP EF N +TG+SP V+G+ ++ + E+P ++L + + L K HK DR PYKV EKV Sbjct: 343 VQIRLSSQAIPVSAFLDSGAAGNFMDL-AFAKKVGISLFPVTPSIRVFAIDDRPLSTDTITLTTGELSVQIGALHLEKMSFLIIPCPSSPVVLGLPWLR-------LHNPSIDWSSGQIS-------RWSQYCQRHCLIPQPLQRVTVSSTSFSALPSVYRDFSDVFCKKSAEFLPPHRRYDCPIDLLPGTMPPRGRTYPLSPAE-----TAAMKEYISENLQRGFIRPSTSPAGAGFFFV---EKKDGGLRPCIDYRGLNKITVKNRYPLPLISELFDQLKGAKIFSKLDLRGAYNLIRIREGDEWKTAFNTRDGHYEYLVMPFGLCNAPAVFQEFVNDIFRDLLGKSVVVYLDDILIFSQDLETHRSQVKEALSRLRENFLFAKLEKCTFEVPKISFLGYIISSRGFEMDPAKVSAIQKWPLPQSTKAIQRFIGFANYYRQFIKDFSSRIAPILSLIRKG--GRPNCWPPVALEAFQSLKDAFISASVLRHPEPHLPFFIEVDASDVGAGAILSQRHSADGKLHPCAYFSKKFSSAEQNYDIGNRELLAVKLALEEWRHLLEGASHPVTIYTDHKNLEFLQSLKRQNPRQAR-WSLFFSRFNFVLTYRPGTKNRKADALSRSFSPEDRLPIEQEPIIPPFRIIASVLPQFAEQILLSQSAAPSDTPIGMAFVPPELRLPILQQTHSSKQAGHPGSEKTLELLRRLVWWPTIRKDVRDFVAACTVCATTKASHSRPCGLLHPLPIPSRPWTHLGMDFIVELPPSCG--------NTVIWVVIDRFSKMAHFIPLRKLPSAVELAHLFIQHIFRLHGFPVEIVSDRGSQFVSRFWRSLCKSLGVSLQFSSAYHPQTNGAAERVNQALEQFLRNHVSLCQD----DWSDLLPWAEFAHNNASHSSTGRSPFLSVYGQHPLAFPQDLLLSEVPAADDLAAHMSVIWAATKSNLEKSSLVHKTFADRRRKPSPPYKVGEKV 1282
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 269.626 bits (688), Expect = 4.948e-87 Identity = 159/454 (35.02%), Postives = 258/454 (56.83%), Query Frame = 1 Query: 4444 KKRIKDMSHDIEEIVNYKLSKKYF---ALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSI----------QTNNVTDIIPAIIEHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTRQAQISH 5766 ++RI DMS DI + V ++ ++Q+DES D+++ QL+ VR+I++ + ++FLCC+ L T D+F + ++L + +ISW G+CTDG P+ GC G LV ++P I HC LHL+ L KTLP + + V+ VN++K+ L +R+F QL +D ++LLLHTE R LSRGKVL R+ EL+DEL +F A+ +F F ++ K+AYL DIF LN +N S+QG N L ++KI +F K+ W+ ++ +N M P++ Q +T +I ++ EHL +L I+ YF +L + R+PF + +E+ L+ + + + +F+ M FW+ + +P LS+ + + L F T+YLCE GFS+L IK+K R RL +E+++R A++ P I ++ + +Q+Q SH Sbjct: 308 RRRIHDMSADILDQVVQEIKSAPLPICSIQLDESTDVANCLQLMVYVRYINDGDFKDEFLCCKPLERTATALDVFEAVDSFLRQHEISWKSICGVCTDGAPATLGCQSGFQRLVLNESPKAIGAHCMLHLQTLAMKTLPQDFQEVMKSVLSSVNFVKASSLNSRLFLQLCSDLDEPSKTLLLHTEGRWLSRGKVLKRIFELRDELKMFFNQKAIRQFEALFSDNSALQKVAYLVDIFTILNELNLSLQGPNSTCLDLSEKIHSFQMKLQLWQKKLDENK-FYMLPTLSAFFEEHDIEQHKRITVVI-SVKEHLDMLASEISWYFPNLPEIPFALARSPFSV--KAEDVPETAQEDFTRLTNSDAARADFSTMPVTQFWVKCLQSYPVLSEMVLRLLLPFPTTYLCETGFSSLLVIKSKYRSRLV-VEDDLRCALAKTTPRISDLVRKKQSQPSH 756 HSP 2 Score: 75.0998 bits (183), Expect = 4.948e-87 Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLGMQAKQFKGAMTISDKAQIASYKEL*LIALK----LKPHTIAESLILP 4360 R+Y++ ++ +GF T P+CV+CGV LS +M P KL RHF + H++ K+ +YF+ K + S+K +A+ + L+AL+ +KPHT AE L+ P Sbjct: 167 RKYNEGFLQYGFTSTITVGIERPQCVICGVVLSAESMKPNKLKRHFESKHSSFAGKDTNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMKPHTFAEHLLFP 279
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 200.29 bits (508), Expect = 1.356e-59 Identity = 146/449 (32.52%), Postives = 239/449 (53.23%), Query Frame = 1 Query: 4450 RIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFID--ENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIIS-THCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFP---------SIQTNNVTDIIPAIIEHLTILDEII-ACYFSSLKLESYD-WIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTRQ 5751 RIK +S DIE+ + K+ + ++FALQ+DES + + LL VRFID ++ + L C E+ +T ++F I Y++ ++W+ CVG CTDG SM + ++E N ++ THCF+H E L +K L L L + QI++++K+ +++ L M +++ +L L+ E+R LSRG++L RL EL+ E+ F N + + F ++ W AKLAYLADIF +N +N+S+QG +K+ F K++ W R +N+ MFP + N+ I I EHL L +I ACY L S + W+ +PF T+ SN +EE++ LS + + MS FW+ + +P L +KA+ + L FS++ LC+ FS LT K+ L +R+A++ + P I ++ K ++ Sbjct: 718 RIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDRYFRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEEMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEI-FLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQEND-YGMFPLFSEFLDSSDVSVKNIASI---IFEHLEGLSQIFHACYPPEEDLRSGNLWLTDPFATYH-SNNLTDSEEEKLAVLSADTGFQSVHKSMSVTQFWVNAKTSYPKLHEKALKLLLPFSSTCLCDATFSALT---ASKQRDLRTCGPTLRLAVTSLVPRIEKLAKEKE 1157 HSP 2 Score: 52.373 bits (124), Expect = 1.356e-59 Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 2 Query: 4031 NRQYSDEYISFGF--AWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYF-KRLLGM--QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEI 4375 ++ Y+ EYI FGF E+ P P+CV+CG L + ++ P L+ H H++L +K D+F ++ L M Q K + + + ASY IA + KP +IAE LI P E+ Sbjct: 573 SQTYNAEYIRFGFIICSGSEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEM 692
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 199.904 bits (507), Expect = 1.710e-59 Identity = 145/449 (32.29%), Postives = 239/449 (53.23%), Query Frame = 1 Query: 4450 RIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFID--ENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIIS-THCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFP---------SIQTNNVTDIIPAIIEHLTILDEII-ACYFSSLKLESYD-WIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEICKTRQ 5751 RIK +S DIE+ + K+ + ++FALQ+DES + + LL VRFID ++ + L C E+ +T ++F I Y++ ++W+ CVG CTDG SM + ++E N ++ THCF+H E L +K L L L + QI++++K+ +++ L M +++ +L L+ E+R LSRG++L RL EL+ E+ + N + + F ++ W AKLAYLADIF +N +N+S+QG +K+ F K++ W R +N+ MFP + N+ I I EHL L +I ACY L S + W+ +PF T+ SN +EE++ LS + + MS FW+ + +P L +KA+ + L FS++ LC+ FS LT K+ L +R+A++ + P I ++ K ++ Sbjct: 810 RIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDRYFRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEEMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFL-NQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQEND-YGMFPLFSEFLDSSDVSVKNIASI---IFEHLEGLSQIFHACYPPEEDLRSGNLWLTDPFATYH-SNNLTDSEEEKLAVLSADTGFQSVHKSMSVTQFWVNAKTSYPKLHEKALKLLLPFSSTCLCDATFSALT---ASKQRDLRTCGPTLRLAVTSLVPRIEKLAKEKE 1249 HSP 2 Score: 52.373 bits (124), Expect = 1.710e-59 Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 2 Query: 4031 NRQYSDEYISFGF--AWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYF-KRLLGM--QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEI 4375 ++ Y+ EYI FGF E+ P P+CV+CG L + ++ P L+ H H++L +K D+F ++ L M Q K + + + ASY IA + KP +IAE LI P E+ Sbjct: 665 SQTYNAEYIRFGFIICSGSEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEM 784
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Gtf2ird2 (GTF2I repeat domain containing 2 [Source:MGI Symbol;Acc:MGI:2149780]) HSP 1 Score: 120.553 bits (301), Expect = 9.918e-27 Identity = 110/392 (28.06%), Postives = 188/392 (47.96%), Query Frame = 1 Query: 4513 FALQIDESVDISSKAQLLALVRFIDEN-EIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKE------KNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSIQT-----NNVTDIIPAII----EHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTL 5640 +++ IDE DI+ QL +R +D+N ++ + L +T +G +IF + L+K I W V + + G P+M G VT ++ K ++ S C +H E L ++ L + +D VV VN+I SR L F L +D++Y SLL HT ++ L RG VL R E +E+ + + K V + W LA+L D+ +LN+++ S+QG ++ + D I AF K+ W+ + +NN L FP++++ ++ + IP I+ E L + +C S L L S +PF T + + E+I L N L+ ++ K+ F+ + +P + FS++++CE FS L Sbjct: 541 YSIAIDEITDINDTTQLAIFIRGVDDNFDVSEELLDTVPMTGAKSGNEIFLRVEKSLKKFSIDWSKLVSVASTGTPAMMDANSGLVTKLRARAASCCKGADLKSVRCIIHPEWLCAQKL--RMGHVMDVVVDSVNWICSRGLNHGDFTTLLYELDSQYGSLLYHTALKWLGRGLVLRRFFESLEEIDSFMS--SRGKPVPQLSSRDWILDLAFLVDMTTHLNTLDASLQGHSQIVTQMYDFIRAFLAKLCLWETHLARNN-LAHFPTLKSVSRSESDGLNYIPKIVELKAEFQRRLSDFKSCE-SELTLFS-----SPFST--TIDSVREELQMEVIDLQCNTVLRTKYDKVGVPDFYKHLWSSYPKYRSHCARMLSMFSSTHICEQLFSIL 919
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Match: Rtl1 (retrotransposon Gaglike 1 [Source:MGI Symbol;Acc:MGI:2656842]) HSP 1 Score: 75.8702 bits (185), Expect = 6.197e-13 Identity = 70/297 (23.57%), Postives = 135/297 (45.45%), Query Frame = 3 Query: 1614 NAVTERQAFPMPNIDEMLDLLGGSVFFSSIDL-----GNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGAMV--YLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAK-KARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKD-GKERVIAYGSHSMTSHEKGYCITRKELLAV 2477 + +T+RQ + + E+ D L G+ +F+ ++L + V E++ + + C+ PF + + ++ +L I G V + ++L+YS S+E+H + +VL + + +K Q ++ LG IS +GV+ + + + I P + L+S + + YR F+ ++A A ++ QL S++ W E E LK A +P+L P + F L+TD + + A L Q D + GK+ A+ S +++ E Y +L + Sbjct: 898 DMLTDRQDYTQ-MVPELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRCYR--PFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAVIAAPLVRQLL---SSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLETDITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPI 1188
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q99315|YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3) HSP 1 Score: 345.125 bits (884), Expect = 5.334e-95 Identity = 266/898 (29.62%), Postives = 419/898 (46.66%), Query Frame = 3 Query: 1326 KLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGK-ERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRT---------------------KCDTCVQCQMAH-EEAKKGKIKTRLLDSIR---------EEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIHRLLC---HAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTK---EPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFG-------------------KKISREKWYGSKEIPIKEELEE---------QTRRK---FNVGEEVLVKVETRHKG------QDRYEGPYKVIEKVHDRRYILRNEDGKRIER--NVEKLKNFLRR 3776 K +EII N AD ++ H ++ K R ++PY E +I + +Q L +N I SP ++P++ V KK+ RLC+D+R LN T FP+P ID +L +G + F+++DL + Y+Q+ +E + + KTAF T +G+Y + MPFG+ AP TF M ++ VYLDDILI+S S E+H+ L VL+ ++ L + +KC+ EE FLG+ I + + K AI++F P VK+ + FLG+ NYYRRFI + +K A+ ++ K +W+E + + LK AL +P+L + K + L TDAS D IGAVL + D K V+ Y S S+ S +K Y ELL + HF++ L+G+ FTLRTDH ++ + +P + Q W++ L++ D +EY G + AD +SR K D + H +E + + + + R E R N + + +E+ + + ++P + ++ H H GV + Y L I + +R+C CQ K+ +P+ + + + I +D L T IL ++D++SK A K + T +L ++I + G P+ I D + +E TK L IK SS H QT+GQ ER +T+ L+ A + +W LP++EF N+T +T GKSP EI G + K + I KE+LE RRK N+G+ VLV + K Q Y GP++V++K++D Y L K+ R NV+ LK F+ R Sbjct: 563 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLP--RLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD----KSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKN--YSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWL--DISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ-NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKKFVYR 1447
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|Q7LHG5|YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2) HSP 1 Score: 344.354 bits (882), Expect = 5.594e-95 Identity = 265/895 (29.61%), Postives = 418/895 (46.70%), Query Frame = 3 Query: 1326 KLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGK-ERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRT---------------------KCDTCVQCQMAH-EEAKKGKIKTRLLDSIR---------EEGRSNIQHGIVEEV---RKKTMIPENELQETIKEIHRLLC---HAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTK---EPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRF-GCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFG-------------------KKISREKWYGSKEIPIKEELEE---------QTRRK---FNVGEEVLVKVETRHKG------QDRYEGPYKVIEKVHDRRYILRNEDGKRIER--NVEKLKNF 3767 K +EII N AD ++ H ++ K R ++PY E +I + +Q L +N I SP ++P++ V KK+ RLC+D+R LN T FP+P ID +L +G + F+++DL + Y+Q+ +E + + KTAF T +G+Y + MPFG+ AP TF M ++ VYLDDILI+S S E+H+ L VL+ ++ L + +KC+ EE FLG+ I + + K AI++F P VK+ + FLG+ NYYRRFI + +K A+ ++ K +W+E + E LK AL +P+L + K + L TDAS D IGAVL + D K V+ Y S S+ S +K Y ELL + HF++ L+G+ FTLRTDH ++ + +P + Q W++ L++ D +EY G + AD +SR K D + H +E + + + + R E R N + + +E+ + + ++P + ++ H H GV + Y L I + +R+C CQ K+ +P+ + + + I +D L T IL ++D++SK A K + T +L ++I + G P+ I D + +E TK L IK SS H QT+GQ ER +T+ L+ A + + +W LP++EF N+T +T GKSP EI G + K + I KE+LE RRK N+G+ VLV + K Q Y GP++V++K++D Y L K+ R NV+ LK+ Sbjct: 589 KYREIIRNDLPPRPADINNIPVKHDIEIKPGARLP--RLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGT-FRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD----KSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEP-ARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKN--YSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWL--DISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ-NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDAYFKKGAYMKVQQIYVGPFRVVKKINDNAYELDLNSHKKKHRVINVQFLKSL 1470
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|P04323|POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 7.799e-92 Identity = 209/639 (32.71%), Postives = 341/639 (53.36%), Query Frame = 3 Query: 888 GRPS-ITVRMNGENFDCLLDTGARINVMSVNCFNKL--RGQQLTKSDDKLRCANESTI---ETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQET----FGFRLLKIKDIEASEKDK----NYICNIEAKFGRKIKD--EERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKE----KKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCV---QCQMAHEE 2729 G+P IT++ N CL+DTG+ +N+ S N F+ + + N+S I + + T + + S+ ++ K+ + I ++ + + I+ I E+ N I + + KI E L R LE L E +L ++ ++ + + T+ KH I T+ Y P E ++E IQ++ GIIR NSP+N+P+ V KK+ K+ R+ +D+R+LN +T P+PN+DE+L LG +F++IDL ++Q+E++ ES KTAFSTK+G Y + RMPFG+ AP TFQ M +L + K +VYLDDI+++S+S ++H LG V + + +A L++ +KC+ +K+E FLGH+++ +G++ +P KI+AIQ + P K++++FLG+ YYR+FI ++A A+ + + C + K + +S F+ LK ++ PIL PD K+F L TDAS +GAVLSQ DG ++Y S ++ HE Y KELLA+ + F+HYL GR F + +DH+ ++++ K P S+ W LS D ++Y KG + AD +SR K + Q Q + EE Sbjct: 11 GKPQYITIKYKENNLKCLIDTGSTVNMTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILFPTTNEFLLHPFSENYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQPNKISPILESDLYR-LEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK-CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQ---DG--HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP-NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEE 641 HSP 2 Score: 62.3882 bits (150), Expect = 4.826e-8 Identity = 71/288 (24.65%), Postives = 120/288 (41.67%), Query Frame = 3 Query: 2847 ELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMF-EIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINAT-LQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSKEIPIKEELEEQTRRKFNVGEEVLVKVETRHKG----QDRYEGPYKVIEKV 3692 E +E I H L H G++K + Y + IQ I+ C IC K T P K E E +DI K+ + ID YSK+ L I +D K ++ + + G PK ++ D AF S ++ + + E++L ++ IER +TI + I D ++T +++ + + TK TTG++PA I Y + I ++ +E K N + V +V+TR++ + + E P+K + V Sbjct: 749 EFKELILTAHEKLLHPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREKFMIDIYS------SEGKHYVSCIDIYSKFATLEEIKTKDWIECKNALM-RIFNQLGKPKLLKADRDGAFSSLALKRWLESEEVELQLNTT--KTGVADIERLHKTINEKIRIIKTSDDEETKLSKMETVLNIYNHKTKHDTTGQTPAHIFL---------YAGQPILDTQQNKENKINKIN-NDRVEYEVDTRYRKGPLQKGKLENPFKPTKNV 1017
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.628e-90 Identity = 179/449 (39.87%), Postives = 266/449 (59.24%), Query Frame = 1 Query: 4447 KRIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPSI-----QTNNVTD--IIPAIIEHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEIC-KTRQAQISH 5766 +RIKD++ DIEE + +L F+LQ+DES D+S A LL VR+ I L C L + TG++IFNCI ++++K +I W+ CV +C+D +M G I VTL+K P S+HC L+ L KT+P +LK+ LD+ VQI+NYIK+RP Q+R+ K L M A++ +LLL+TE+R LSRGKVL RL EL+ ELL + + + N W +LAYLADIF LN VN S+QGKN + T DK+ + +K+ +W + + + N D FP++ + N+ D I AI++HL L + YF + + + W+RNPF ++ E +I L+++ +K F+++S FW + +E+PS++++A+ + L F+T +LCE GFS KTK R+RL D MR+ +S I PNI IC K Q SH Sbjct: 251 RRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAMDGKIAEAVTLIKYVAPESTSSHCLLYRHALAVKTMPTSLKNVLDQAVQIINYIKARPHQSRLLKILCEEMGAQHTALLLNTEVRWLSRGKVLVRLFELRRELLVFMDSAF--RLSDCLTNSSWLLRLAYLADIFTKLNEVNLSMQGKNVTVFTVFDKMSSLLRKLEFWASSVEEEN-FDCFPTLSDFLTEINSTVDKNICSAIVQHLRGLRSTLLKYF-PVTNDIHAWVRNPFTVTVKPASLVARDYESLIDLTSDSQVKQSFSELSLNDFWSSLIQEYPSVARRAVRVLLPFATMHLCETGFSYYAATKTKYRKRL-DAAPHMRIRLSNITPNIKRICDKKTQKHCSH 694 HSP 2 Score: 69.707 bits (169), Expect = 1.628e-90 Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLGM----QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEIV 4378 R+Y + Y+SFGF + ++ P +CV+C LSNS++ P+KL RH HA K+ +FK+ L + K T ++ A ASY IAL + HTI E LI P ++V Sbjct: 109 RKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVV 227
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 9.086e-90 Identity = 178/449 (39.64%), Postives = 263/449 (58.57%), Query Frame = 1 Query: 4447 KRIKDMSHDIEEIVNYKLSK-KYFALQIDESVDISSKAQLLALVRFIDENEIVNQFLCCRELTEHTTGKDIFNCITTYLEKSQISWDFCVGICTDGCPSMAGCIKGCVTLVKEKNPNIISTHCFLHLEVLVSKTLPNTLKSALDKVVQIVNYIKSRPLQARIFKQLRISMDAKYESLLLHTEIRSLSRGKVXXXXXXXXXXXXXYFQNVAMNKFVKNFENDIWCAKLAYLADIFKYLNSVNTSIQGKNENILTSTDKILAFNKKILYWKNRITKNNTLDMFPS-------IQTNNVTDIIPAIIEHLTILDEIIACYFSSLKLESYDWIRNPFGTFEFSNXXXXXXXXXXXXXXTNRSLKMEFTKMSNEHFWIFVQEEHPSLSKKAITI*LQFSTSYLCELGFSTLTNIKTKKRERLTDLEEEMRVAISYIRPNIGEIC-KTRQAQISH 5766 +RIKD++ DIEE + +L F+LQ+DES D+S A LL VR+ I L C L + TG++IFNCI ++++K +I W+ CV +C+D +M G I VTL+K P S+HC L+ L K +P +LK+ LD+ VQI+NYIK+RP Q+R+ K L M A++ +LLL+TE+R LSRGKVL RL EL+ ELL + + + N W +LAYLADIF LN VN S+QGKN + T DK+ + +K+ +W + + + N D FP+ I + DI AI++HL L + YF + ++ W+RNPF ++ E +I L+++ +K F+++S FW + +E+PS++++A+ + L F+T +LCE GFS KTK R+RL D MR+ +S I PNI IC K Q SH Sbjct: 251 RRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESLQSNATGEEIFNCINSFMQKHEIEWEKCVDVCSDASRAMDGKIAEAVTLIKYVAPESTSSHCLLYRHALAVKIMPTSLKNVLDQAVQIINYIKARPHQSRLLKILCEEMGAQHTALLLNTEVRWLSRGKVLVRLFELRRELLVFMDSAF--RLSDCLTNSSWLLRLAYLADIFTKLNEVNLSMQGKNVTVFTVFDKMSSLLRKLEFWASSVEEEN-FDCFPTLSDFLTEINSTVDKDICSAIVQHLRGLRSTLLKYF-PVTNDNNTWVRNPFTVTVKPASLVARDYESLIDLTSDSQVKQNFSELSLNDFWSSLIQEYPSIARRAVRVLLPFATMHLCETGFSYYAATKTKYRKRL-DAAPHMRIRLSNITPNIKRICDKKTQKHCSH 694 HSP 2 Score: 69.707 bits (169), Expect = 9.086e-90 Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 4034 RQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAMFPAKLNRHFTNSHANLVSKNNDYFKRLLGM----QAKQFKGAMTISDKAQIASYKEL*LIALKLKPHTIAESLILPSCCEIV 4378 R+Y + Y+SFGF + ++ P +CV+C LSNS++ P+KL RH HA K+ +FK+ L + K T ++ A ASY IAL + HTI E LI P ++V Sbjct: 109 RKYDESYLSFGFTYFGNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVV 227
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5J4NQX1 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0008956 PE=4 SV=1) HSP 1 Score: 540.806 bits (1392), Expect = 3.482e-155 Identity = 306/946 (32.35%), Postives = 499/946 (52.75%), Query Frame = 3 Query: 894 PSITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGG----IELQETFGFRLLKIK----DIEASEKDKNYICNIEAKFGRKIKDEE-------RLIRA--LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVT-RGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLK---KEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTK------CDTCVQCQMA-----HEEAKKGKIKTRLLD------SIREEG-RSNIQH--GIVEEVR-------------------------KKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKI 3527 P + ++ G +F+CLLD+G+ +++ + + + ++ N + + + V IG + + F V K+ V+ G I +Q L ++ K +E + G+ + E + R+ + L + +++++I +F + GRTH V+H+I T PI R P++L+ ++E+ + ++ E GIIR SPW +P++ V KK+ +RLC+D+RQLNAVT++ +FP+P ID+ +D L G+ +FS++DL + Y+QVE+E + KTAF +G Y F MPFG+ AP TFQ +M +VLG + K +VYLDD++++ + ++H L VL + EAGL++NP KC ++ E+++LGH+IS+ GV DP K++ ++ + P V+++RSFLG+ +YYRRF+ ++ A+ L L + EWSE F+ LK AL TAPIL PD + K FILDTDAS IGAVLSQ D + KE VIAYG+ ++ E+ YC TRKE+LA+ +F HF+HYL GRRF +RTDH ++ ++ K P Q W +L + ++R G+ H+NAD +SR C +C + MA E + I++ D I+E G R Q G E R + ++PE+ ++ ++E+H L HAG K+ + K R+ H ++++ SC +C + K P++ + EI+ VDI GPL ET +YIL ++D ++K+ + + D T K I + WI R+G P ++ D G FES MM E ++L I+ ++ YH Q NG +ER RT++ L+ A + W E + + A+ +T +SP ++ G+++ Sbjct: 285 PVLKAKVGGRDFECLLDSGSVCSLLDKETYTICQFDAIAGPGSQVLAVNGQPLHILACVRGTVQIGKWTCTLNFFVVPKLPFHVVLGSNYLITMQCILDLPNLAVQVYGERFPLEPVYKTLAGVVEVRTGQHVTKGEVHAEFEWQKFRSTIISHLPAHLAQRVRDVIEKHRAIFWWEGQPPGRTHFVRHRIDTGEAHPIRQAARRLPVHLQGQVEQLLTDMLEKGIIRPSTSPWASPVVLV-KKKDGSLRLCVDYRQLNAVTKKDSFPLPRIDDTIDALSGTEWFSTLDLASGYWQVEVEPSDRLKTAFVVPSGLYEFETMPFGLTNAPATFQRLMQQVLGDLIPKQCLVYLDDVIVHGRTVDEHLHNLSNVLSRLAEAGLKLNPAKCSFMRTEVKYLGHVISQSGVSCDPEKVRKVKEWPTPESVEEIRSFLGLASYYRRFVPRFSHIAKPLTLLTE--KGRVFEWSEDCQQSFDRLKDALCTAPILALPDTRADAKMFILDTDASDVAIGAVLSQLDNNDKEHVIAYGNRNLNRSERNYCTTRKEMLALVHFIKHFRHYLLGRRFLVRTDHSSLQWLQNFKDP-EGQVARWQEFLQEYNFECKHRPGLRHRNADALSRRPIRDHGDCPSCTRYSMAITIRPEENNRWAAIQSSDADLQIIYRRIKEGGPRPTTQEMAGSSWEARCLWSLWNHLYIADNVLYYQYGPTYESQIVVPESAVRSVLQELHENLGHAGQNKLEEAAKRRFWWPHQRRDVKDVCSSCGLCAQIKNPKRQQCAPLQSMLTGYPNEIVEVDIVGPLPETTRGNRYILVMVDHFTKWCEAVPVPRADGGTTAKFIFDHWISRWGAPTQLHTDRGSNFESTMMHELCRILGIRKTRTTAYHPQGNGAVERVNRTLKSLLKAFVSSENTRSWDEAVSQCLLAYRASVHSSTAQSPHYLLTGREM 1226
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0V1KKR9 (Transposon Ty3-G Gag-Pol polyprotein OS=Trichinella nativa OX=6335 GN=TY3B-G PE=4 SV=1) HSP 1 Score: 516.538 bits (1329), Expect = 1.008e-154 Identity = 290/932 (31.12%), Postives = 490/932 (52.58%), Query Frame = 3 Query: 1278 ERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVT-RGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGA--MVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTC----------VQCQMAHEEAKKGKIKTRLLDS---------------------------------IREEGRSNI-QHGIV---------EEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKI-------------------------SREKWYGSKEIPIKEELEEQTRR------------KFNVGEEVLVKVETRHKGQDRYEGPYKVIEKVHDRRYILRNEDGKR--IERNVEKLKNFLRRGI 3782 E+++ + ++ S L I+ +V D+GRT LV+H I T +P+ P R P + +++E + + ++ +SPW +P++ V KK+ R C+D+RQLN +T + A P+P ID+ LD L G+ +FS++DL + Y+QVE+E + +EKTAF+T G Y F MPFG+ AP TFQ +M L + G+ +VYLDD++++ + E+H L EV + + E GL++ PEKC+++K + +LGHIIS++G+ TDPSK A++ + P CV +LR FLG+ +YYR+F++ +A A L +L + +WS+ S F+ LK LT+AP+L +PD ++FI+D DAS D +GAVLSQR++ ERV+AY S ++T E+ YC TR+E+L + + F+ YLYG+RF +RTDH + ++ T ++P Q W+ L+ LD VE+R G H NAD +SRT C C VQ E K +LL + + ++ R+ + + G++ EE K+ ++P E ++ +H R H G + ++ R+ + + R+C C + K T + P++ + + + +DI GPL +T +Y+L + D ++K+ + + T+ K ++EK++ FG P + D G++FE+ ++ E ++ IK SSPYH Q NGQ ER RT+ D+++ + D W ++LP V N++ ++TG +PA + G+++ +RE+ E+ ++ L+ Q RR +F + V + + R K +EGPY+V+E + + Y +R+ + KR I + +++K + R I Sbjct: 53 EKMLPSEQESSGKHRSALAAILKEFADVLSTSDEDLGRTSLVRHAIHTGDAKPVRCSPRRIPYHQRAQVESLLDEMLRQDVVEPSSSPWASPIVLVRKKDGS-CRFCVDYRQLNNLTRKDAHPLPRIDDTLDALAGAQWFSTLDLASGYWQVEVEPQDREKTAFTTPLGLYQFKVMPFGLCNAPATFQRLMEIALRGLVGSDCLVYLDDVIVFGKTAEEHTARLREVFRRLREVGLKVKPEKCRLMKRRVAYLGHIISEKGIATDPSKTSAVREWPTPTCVSELRQFLGLASYYRKFVNGFANVAAPLHRLLE--KGAEWDWSKACQSAFDTLKYHLTSAPVLAYPDFHRQFIVDVDASGDGLGAVLSQREEKA-ERVVAYASRTLTKAERRYCATRREMLGLVWALREFRPYLYGQRFLVRTDHSCLRWLTTFREP-EGQVARWLESLAELDFEVEHRAGRLHGNADALSRTSCAQCGRLVEGSACAVQAAQLRTEDVAQSFKDQLLAAQQADPEIQLLRQWLVGASWPVECPPECSRDMHVLWQQRRTWVDEDGLIWRHRRGLTAEEGAKQALVPRALRNEVLQSMHDSRYAGHLGERRTLARVRSRFYWPGMSGDVHTWCRTCTQCARRKGPTKNNRAPMQAMAAGYPLQRVGMDILGPLEKTPSGNRYVLVLTDYFTKWTAAFPLANMEASTVAKVLVEKYVAYFGAPDCLHSDQGRSFEASVVLEMCRLFGIKKTRSSPYHPQGNGQAERFNRTLLDMLS-IMVDGNPGQWDDMLPFVMLAYNSSVHESTGVTPAIAMLGRELRLPLDVQIGNPPGGEAQGLPDYIRETRERIDRVHEL-ARDHLKTQQRRQKYLHDRHAKESRFCPNDRVWLAMPRRGKLDRGWEGPYRVVEVMGPQTYRVRHNERKRRTIVVHSDRMKRYHARDI 977
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A0V1KLB2 (Transposon Ty3-G Gag-Pol polyprotein OS=Trichinella nativa OX=6335 GN=TY3B-G PE=4 SV=1) HSP 1 Score: 518.079 bits (1333), Expect = 2.233e-154 Identity = 310/1072 (28.92%), Postives = 542/1072 (50.56%), Query Frame = 3 Query: 936 LLDTGARINVMSVNCFNKLRG-QQLTKSDDKLRCANESTIETIGKTKVQVTIGN-------------VSKEVI----FIVAEKVTPDVIGG--------IELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVT-RGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGA--MVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTC----------VQCQMAHEEAKKGKIKTRLLDS---------------------------------IREEGRSNI-QHGIV---------EEVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKI-------------------------SREKWYGSKEIPIKEELEEQTRR------------KFNVGEEVLVKVETRHKGQDRYEGPYKVIEKVHDRRYILRNEDGKR--IERNVEKLKNFLRRGI 3782 L+DTG+ + + + L+ + + K +L A + +E ++ +GN +S +++ F+ TPD G I +++ L++++ ++ + + A+ + E+++ + ++ S L I+ +V D+GRT LV+H I T +P+ P R P + +++E + + ++ +SPW +P++ V KK+ R C+D+RQLN +T + A P+P ID+ LD L G+ +FS++DL + Y+QVE+E + +EKTAF+T G Y F MPFG+ AP TFQ +M L + G+ +VYLDD++++ + E+H L EV + + E GL++ PEKC+++K + +LGHIIS++G+ TDPSK A++ + P CV +LR FLG+ +YYR+F++ +A A L +L + +WS+ S F+ LK LT+AP+L +PD ++FI+D DAS D +GAVLSQR++ ERV+AY S ++T E+ YC TR+E+L + + F+ YLYG+RF +RTDH + ++ T ++P Q W+ L+ LD VE+R G H NAD +SRT C C VQ E K +LL + + ++ R+ + + G++ EE K+ ++P E ++ +H R H G + ++ R+ + + R+C C + K T + P++ + + + +DI GPL +T +Y+L + D ++K+ + + T+ K ++EK++ FG P + D G++FE+ ++ E ++ IK SSPYH Q NGQ ER RT+ D+++ + D W ++LP V N++ ++TG +PA + G+++ +RE+ E+ ++ L+ Q RR +F + V + + R K +EGPY+V+E + + Y +R+ + KR I + +++K + R I Sbjct: 2 LVDTGSAVTLANERFIRHLKTLRDVPKPSIRLETATATELEITNACVTEIILGNSVTVQHTVLCVRELSHKILLGWDFMRYHGCTPDPTAGCLRMRQGNIPFRKSHAVALVRVESPQS-----ELMAHHPAQ-----EAMEKMLPSEQESSGKHRSALAAILKEFADVLSTSDEDLGRTSLVRHAIHTGDAKPVRCSPRRIPYHQRAQVESLLDEMLRQDVVEPSSSPWASPIVLVRKKDGS-CRFCVDYRQLNNLTRKDAHPLPRIDDTLDALAGAQWFSTLDLASGYWQVEVEPQDREKTAFTTPLGLYQFKVMPFGLCNAPATFQRLMEIALRGLVGSDCLVYLDDVIVFGKTAEEHTARLREVFRRLREVGLKVKPEKCRLMKRRVAYLGHIISEKGIATDPSKTSAVREWPTPTCVSELRQFLGLASYYRKFVNGFANVAAPLHRLLE--KGAEWDWSKACQSAFDTLKYHLTSAPVLAYPDFHRQFIVDVDASGDGLGAVLSQREEKA-ERVVAYASRTLTKAERRYCATRREMLGLVWALREFRPYLYGQRFLVRTDHSCLRWLTTFREP-EGQVARWLESLAELDFEVEHRAGRLHGNADALSRTSCAQCGRLVEGSACAVQAAQLRTEDVAQSFKDQLLAAQQADPEIQLLRQWLVGASWPVECPPECSRDMHVLWQQRRTWVDEDGLIWRHRRGLTAEEGAKQALVPRALRNEVLQSMHDSRYAGHLGERRTLARVRSRFYWPGMSGDVHTWCRTCTQCARRKGPTKNNRAPMQAMAAGYPLQRVGMDILGPLEKTPSGNRYVLVLTDYFTKWTAAFPLANMEASTVAKVLVEKYVAYFGAPDCLHSDQGRSFEASVVLEMCRLFGIKKTRSSPYHPQGNGQAERFNRTLLDMLS-IMVDGNPGQWDDMLPFVMLAYNSSVHESTGVTPAIAMLGRELRLPLDVQIGNPPGGEAQGLPDYIRETRERIDRVHEL-ARDHLKTQQRRQKYLHDRHAKESRFCPNDRVWLAMPRRGKLDRGWEGPYRVVEVMGPQTYRVRHNERKRRTIVVHSDRMKRYHARDI 1056
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5S6QHB1 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 526.939 bits (1356), Expect = 8.806e-154 Identity = 309/951 (32.49%), Postives = 509/951 (53.52%), Query Frame = 3 Query: 900 ITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQ-QLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRL-------------LKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQ-----LKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIE-----EAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIK--GAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQ-----------------------CQMAHEEAK---KGKIKTRLLDSIREEGRSN-------------IQHGIV---------EEVRKKTMIPENELQETIKEIHRLLC--HAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKK 3524 + V++ L+DTGA ++ + F ++RGQ +L+ + +L A + ++ +G + + +G+ + ++ IV + + GI+ + GF + L+I A N ++ G+ + +R+++ L + L ++ KL +++ N F A ++D+GRT ++KH IVT NI+P R PL + +E + IQ L +N II NSPW ++ V KK+ +RLC+D+R+LN V+ R A+P+P IDE L+ L G+ +FS+IDL + Y+QVEL E ++EKTAF T +G + FN MPFG+ AP TFQ +M VL +K +VYLDDI+++S + E+H L +VL +++AGL+ N KC++ +E+R+LGHI+S++G++ DPS + ++ + P C+ +++ FLG+ +YYR+FI D+A A+ L QL K +W+ S F+ L+ AL + PIL PD FILDTDAS IGAVLSQRD+ G+E +AY S ++T E+ YC+TR+E+LAV F F+ YL ++FTLRTDH ++ ++ K P Q+ W L D +E+R G H NAD +SR C C + Q+ E+ K K + IR RSN IQ GI+ R + ++P+ ++ + + H+ L H G+EK + +++R+ S ++ V SC C + P++ + +E + +DI GPL ++ +YIL ID +SK+ I Q+ +T+ + ++ ++I R+G P+ I D G FE+ + + L I+ ++PYH NGQ+ER RT+ +++ + D W E+LP+V A+ Q +T +P +VFG++ Sbjct: 356 VPVQVRNRCIRMLVDTGAGRTLLRSDEFARIRGQWKLSPCNVRLLSAEGTALDVMGSVSLPLQVGDRTFDMEVIVVNALQFAGLLGIDFLKQHGFVVDLARGTLNSPKQKLRIPLQSAGRTSGNGAWSVSV--GKPVSLSKRMLQQLVETTGVPLTASQRKKLHGMLSKFRNAFAASEFDIGRTSVLKHDIVTD----NIRPVRHPLRRLAPVERKEVSQLIQRLLDNKIIEPSNSPWAAGIVPVRKKDG-SLRLCVDYRKLNEVSRRDAYPIPRIDETLEALAGARYFSTIDLLSGYWQVELTEAAKEKTAFITHDGLFQFNVMPFGLTGAPATFQRLMEHVLAGLKWNTCLVYLDDIIVFSRTAEEHVEHLSQVLNRLQKAGLKANASKCKLFCKEVRYLGHIVSEKGIEPDPSLTEKMRTYPVPTCLAEVKRFLGLASYYRKFIKDFAAIAKPLHQLTE--KRKPFQWTPECTSAFQKLRTALLSEPILRLPDFDASFILDTDASDTAIGAVLSQRDEHGREHPVAYASRTLTRAEQRYCVTRREMLAVITFTDQFRPYLQ-QKFTLRTDHGSLQWLRDFKNP-DGQWARWQQKLQQYDFDIEHRAGSRHANADTLSRIPCKQCGRSGTEVMGVPVNVVALENLEEMRTSQLDDEDIAPILKAKAAGVVGQEIRCGKRSNSKNLLMLNWHRLAIQKGILVRKWFCDDQSGYRWQVVVPKRMIKPVLDQAHQQLTAGHLGIEKTIERIRERFYWPGYRSDTKKYVASCYECNTRNEPVGKGRAPLQPVVTTRRWEKLAIDILGPLVVSETGNRYILVAIDCFSKFAEAFPIPDQEAKTVTRVLVNEFICRYGVPEAIHTDQGSQFEAAIFQSMCTELGIRKTRTTPYHPSGNGQVERMNRTLGTMLSKVV-DENHRKWDEVLPKVMMAYRASIQSSTRMAPYTMVFGEQ 1294
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Match: A0A5S6Q2I3 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1) HSP 1 Score: 526.554 bits (1355), Expect = 1.081e-153 Identity = 309/951 (32.49%), Postives = 509/951 (53.52%), Query Frame = 3 Query: 900 ITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQ-QLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRL-------------LKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQ-----LKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIE-----EAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIK--GAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQ-----------------------CQMAHEEAK---KGKIKTRLLDSIREEGRSN-------------IQHGIV---------EEVRKKTMIPENELQETIKEIHRLLC--HAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKK 3524 + V++ L+DTGA ++ + F ++RGQ +L+ + +L A + ++ +G + + +G+ + ++ IV + + GI+ + GF + L+I A N ++ G+ + +R+++ L + L ++ KL +++ N F A ++D+GRT ++KH IVT NI+P R PL + +E + IQ L +N II NSPW ++ V KK+ +RLC+D+R+LN V+ R A+P+P IDE L+ L G+ +FS+IDL + Y+QVEL E ++EKTAF T +G + FN MPFG+ AP TFQ +M VL +K +VYLDDI+++S + E+H L +VL +++AGL+ N KC++ +E+R+LGHI+S++G++ DPS + ++ + P C+ +++ FLG+ +YYR+FI D+A A+ L QL K +W+ S F+ L+ AL + PIL PD FILDTDAS IGAVLSQRD+ G+E +AY S ++T E+ YC+TR+E+LAV F F+ YL ++FTLRTDH ++ ++ K P Q+ W L D +E+R G H NAD +SR C C + Q+ E+ K K + IR RSN IQ GI+ R + ++P+ ++ + + H+ L H G+EK + +++R+ S ++ V SC C + P++ + +E + +DI GPL ++ +YIL ID +SK+ I Q+ +T+ + ++ ++I R+G P+ I D G FE+ + + L I+ ++PYH NGQ+ER RT+ +++ + D W E+LP+V A+ Q +T +P +VFG++ Sbjct: 356 VPVQVRNRCIRMLVDTGAERTLLRSDEFARIRGQWKLSPCNVRLLSAEGTALDVMGSVSLPLQVGDRTFDMEVIVVNALQFAGLLGIDFLKQHGFVVDLARGTLNSPKQKLRIPLQSAGRTSGNGAWSVSV--GKPVSLSKRMLQQLVETTGVPLTASQRKKLHGMLSKFRNAFAASEFDIGRTSVLKHDIVTD----NIRPVRHPLRRLAPVERKEVSQLIQRLLDNKIIEPSNSPWAAGIVPVRKKDG-SLRLCVDYRKLNEVSRRDAYPIPRIDETLEALAGARYFSTIDLLSGYWQVELTEAAKEKTAFITHDGLFQFNVMPFGLTGAPATFQRLMEHVLAGLKWNTCLVYLDDIIVFSRTAEEHVEHLSQVLNRLQKAGLKPNASKCKLFCKEVRYLGHIVSEKGIEPDPSLTEKMRTYPVPTCLAEVKRFLGLASYYRKFIKDFAAIAKPLHQLTE--KRKPFQWTPECTSAFQKLRTALLSEPILRLPDFDASFILDTDASDTAIGAVLSQRDEHGREHPVAYASRTLTRAEQRYCVTRREMLAVITFTDQFRPYLQ-QKFTLRTDHGSLQWLRDFKNP-DGQWARWQQKLQQYDFDIEHRAGSRHANADTLSRIPCKQCGRSGTEVMGVPVNVVALENLEEMRTSQLDDEDIAPILKAKAAGVVGQEIRCGKRSNSKNLLMLNWHRLAIQKGILVRKWFCDDQSGYRWQVVVPKRMIKPVLDQAHQQLTAGHLGIEKTIERIRERFYWPGYRSDTKKYVASCYECNTRNEPVEKGRAPLQPVVATRRWEKLAIDILGPLVVSETGNRYILVAIDCFSKFAEAFPIPDQEAKTVTRVLVNEFICRYGVPEAIHTDQGSQFEAAIFQSMCTELGIRKTRTTPYHPSGNGQVERMNRTLGTMLSKVV-DENHRKWDEVLPKVMMAYRASIQSSTRMAPYTMVFGEQ 1294
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041345.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:32334536:32339002:1 gene:ENSAMXG00000029230.1 transcript:ENSAMXT00000041345.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 421.779 bits (1083), Expect = 3.628e-121 Identity = 284/945 (30.05%), Postives = 475/945 (50.26%), Query Frame = 3 Query: 897 SITVRMNGENFDCLLDTGARINVMSVNCFNKL-RGQQLTKSD--DKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTP--DVIGGIELQETFGFRLLKIKDI-------------EASEKDKNY----ICNIEAKFGRKIKDEERLIRAL-EQLKINEDSK--LKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGE-PINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKG--AMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKC----DTCVQCQ--------------MAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEVRKKTMIPENELQETIKEI----HRLLCHAGVEKIADYMKDRYVGKHL--------------WSKIQEIV----RSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKI 3527 ++ + + G+ ++DTG+ +++ ++++ R Q++ +S K AN T G ++ +G + F V E ++ G++ G L KD+ E +Y +C + + +EE+ I L E I +K L ++++ +V +GRT +V H I T PI KPY+ + + I+EAI+++ GI+R SPW +P++ V KKE +R C+D+R++N+ T A+PMP + E+L+ L G+ FS++DL + Y+QV LE +S KTAF T G Y F +PFGI A TFQ +M VL +KG VY++DI++YSS+ E+H L EV + + +AGL +N KC +++ + FLGH+IS EG+ T+P K++AIQ F +P +K+L+ FLG+ +Y RFI+ ++++A +L L N W++ FE +K AL TAP+L P+ + F + TDAS +GAVLSQ DG E V+AY S + E+ Y KE LAV + ++ YL GR FT+ TDH A++++ KP TS+ W L + D V+YRKG + D +SR CQ +A + G ++ + ++ +E R + H + + +P +L T++ + HR E Y D + HL W I+ V +SCEICQK K ++ E ++ VD+ GPL ++ + +++L I+D SK+ + + + I + +++ R+G P + D G F S ++ + + ++ YH QTN ER RT++ +I + ++D+ + W + +PE F +N+ Q++TG +PAE+ G+K+ Sbjct: 427 TLPLSVRGQQVTAMIDTGSTFSLIQEGTWDRMKRTQEVWRSGRGQKFILANGQTQTAKGVVELDCELGKCQAKRPFYVMENKDHVFSLVLGLDFLHDTGLILDFQKDVYILPGGDTVPFGGEGESPPFSYADMRLCIAQEDYVPLDYEEEQEINKLVEGADITSQAKQDLHKLLSQWPSVCTNQ---LGRTMIVLHHITTNDNLPIRQKPYKVSIEKQQLIKEAIEDMQRRGIVRPSTSPWASPVVLVPKKEG-GVRFCVDYRRMNSKTHLDAYPMPQVQEILESLHGAAIFSTLDLKSGYWQVGLEPDSIPKTAFITCQGLYEFTVLPFGIKNAAATFQRLMDSVLVNLKGKSCFVYINDIVVYSSTIEQHLGHLEEVFRCLHQAGLTLNLRKCNLLQRSLIFLGHVISGEGICTEPGKVEAIQAFPEPRSIKELQRFLGMAGWYHRFITHFSERAAILNALKK--KNAPWIWTQECQKAFEDIKQALITAPVLTPPNFSEPFQIQTDASDQGLGAVLSQ-GTDGLEHVVAYASRLLQGAERNYSTAEKECLAVVWAVEKWRVYLEGRHFTVITDHSALSWVFNHPKP-TSRLTRWAIRLQTFDFSVQYRKGKCNIVPDTLSRIPDRMTEGVMAPCQVTGSSDGLPVDWAEIARAQEVDGTLQPQRDETGNQETRKDRIHFVTKNDILFRAVPNQQLGHTLQVVVPVQHR-------EAFLQYAHDNPLSGHLGQMKTLLRLLNIAYWPSIRRDVWTYCKSCEICQKYKPRISKLSGRLQSTPVVEPGYMLGVDLMGPLPKSPRQNEHLLVIVDYCSKWVEMFPLREAKTSQIVQILIKDIFTRWGTPAYLVSDRGAQFTSRLLHATCRQWGVVQKLTTAYHPQTN-LTERVNRTLKTMIASYVKDKHRL-WDQWIPEFRFAINSAWQESTGFTPAEVALGRKL 1354
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000041754.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001938.1:55959:59870:1 gene:ENSAMXG00000043385.1 transcript:ENSAMXT00000041754.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 414.461 bits (1064), Expect = 5.467e-120 Identity = 259/857 (30.22%), Postives = 436/857 (50.88%), Query Frame = 3 Query: 1278 ERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQ-PLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLG--KIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLE-----------WSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEK---GYCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSR---------TKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIVEEV----------RKKTMIPENELQETIKEIHRLLC------------------------------------------------HAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFG--KKISREKWYGSKEIPIK-EELEE 3584 E + E L + + + + N+F + D+G T L+ H+I E +PYR+ P + S ++ IQ L ++ +IR+ +SP+++P++ V KK+ +RLC+D+RQLNA T R ++P+P I+E LD L G+ +FS++DL + Y QV +EE+ + KTAF T G + FNRMPFG+ APGTFQ +M ++ G + + ++YLDD++++S + E+H L EV +++ L++ KCQ + ++ +LGH++S EGV TDP+KI+ ++ + P+ + +LRSFLG +YYRRF+ ++K A L +L G S + + W F+ LK LT+ P+L + D K FI++ DAS +GAVLSQ +++GK R IA+ S + E+ Y + ELLAV + F+ YL G +FT+ TD+ ++ + T K + + Q W + L+S + ++YR G ++QNAD +SR TK V + HEE + ++ + + GRS G+++ R + P E ++T+ + ++L H G E+ ++DR ++ ++ + C+ C KA+ + + EI+ +D L K+ +L + D ++KY A Q T+ +++ W RFG P I D G+ FES ++++ K+ I+ ++ Y Q NGQ ER RT+ DL+ TL +K W LP++ F N T +TTG++P ++FG ++ + G+ E+ E LEE Sbjct: 255 EYVTSDFEGLTDLQAQRARALFQKYSNIFAKSEGDLGCTSLISHEIPLLDEVPVRQPYRRIPPSQYSTVKAHIQQLLDSRVIRESSSPFSSPIVLVTKKDG-SLRLCVDYRQLNAKTRRDSYPLPRIEESLDALCGAKWFSTLDLASGYNQVPVEEKDKSKTAFCTPFGLFEFNRMPFGLCNAPGTFQRLMERIFGDCRYQSVLLYLDDVIVFSQTVEEHLERLEEVFSRLQKQNLKVKLSKCQFFQHQVSYLGHVVSAEGVTTDPAKIEVVKEWKSPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHRLVGGLSGPRRKGKTPKTSLAAFWDAECEQAFQSLKDRLTSTPVLAYADFNKPFIVEVDASHGGLGAVLSQ-EQEGKVRPIAFASRGLRPTERNMENYSSMKLELLAVKWAVTEKFREYLLGHQFTIYTDNNPLSHLQTAK--LGAVEQRWASQLASFNFTIKYRPGKHNQNADALSRQYLERFAVGTKVPPLVM-EAVHEE--RSALENQCRQVVAFPGRSPSDLGVLQRADPVIGPVWKFRSEGRRPRTEERDTLCNLSKVLIRQWDRLVEREGVLYRRAYPSGRGSEYFQLLLPQCLQKEVLHSVHDDHGHQGTERTLQLLRDRCFWPNMTQDVERWCQQCQRCTLGKAVQPKVRAFQGTLQAAHPNEILAIDFTI-LEPASDGKENVLILTDIFTKYTQAIATKDQRASTVAWALVQHWFHRFGPPVRIHSDQGRNFESLLIKQLCKVYSIQKSRTTSYRPQGNGQCERFNRTLHDLLR-TLPVEEKRHWPRHLPQLTFAYNTTPHQTTGQTPHFLMFGYHPRLPVDFLLGTGEVTASTEPLEE 1102
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000037150.1 (pep primary_assembly:Astyanax_mexicanus-2.0:10:22265216:22268869:1 gene:ENSAMXG00000033912.1 transcript:ENSAMXT00000037150.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 403.675 bits (1036), Expect = 6.609e-117 Identity = 255/833 (30.61%), Postives = 419/833 (50.30%), Query Frame = 3 Query: 1269 KDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQ-PLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLG--KIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSG-----------PSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEK---GYCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCV------QCQMAHEEAKKGKIKT-RLLDSIREEGRSNIQHGIVEEV----------RKKTMIPENELQETI--------KEIHRLLCHAGV----------------------------------------EKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFG 3518 K L+ +E L + + + + ++F + D+G T L+ H+I E +PYR+ P + ++ IQ L ++ +IR SP+++P++ V KK+ +RLC+D+RQLNA T R A+P+P I+E LD L G+ +FS++DL + Y QV + E+ + KTAF T G + FNRMPFG+ AP TFQ +M ++ G + + ++YLDD++++SSS E+H L EV +++ GL++ KC + ++ +LGH++S+EGV TDP+KI A++ + +P+ + +LRSFLG +YYRRF+ ++K A L QL P W E F+ LK LT+AP+L + D K FI++ DAS +GAVLSQ +++GK R IA+ S + E+ Y + ELLAV + ++ YL G T+ TD+ ++ + T K T Q W + L+S + +++YR G ++QNAD +SR D +M E++ KT + + + GRS + +++E RK+ P E +E + ++ RLL GV E+ ++ R + ++ + C C +KA+ + + EI+ +D + GR+ +L + D ++KY Q T+ + +++ W RFG P I D G+ FES ++++ M I+ ++ Y Q NGQ ER RT+ DL+ TL +K W L + F N T +TTGK+P ++FG Sbjct: 268 KSPHGLLSDIEGLSEEQMAAVSLLFDQYQDIFAQTEGDLGCTTLLTHEIPLLDEVPVRQPYRRIPPSQYEAVKLHIQQLLDSKVIRNSASPYSSPIVLVTKKDG-SLRLCVDYRQLNAKTRRDAYPLPRIEESLDALAGAKWFSTLDLASGYNQVPVSEKDRYKTAFCTPFGLFEFNRMPFGLCNAPATFQRLMERMFGDCRYQSVLLYLDDVIVFSSSVEQHLERLAEVFSRLQKQGLKVKLSKCHFFQPQVNYLGHVVSREGVATDPAKIDAVRGWRRPSHLAELRSFLGFASYYRRFVEGFSKLAAPLHQLVGKLGGARRKGKTLPVPLAASWDERCEKAFQSLKERLTSAPVLAYADFSKPFIVEVDASHGGLGAVLSQ-EQEGKVRPIAFASRGLRPAERNMDNYSSMKLELLAVKWAVTEKYREYLLGNEVTILTDNNPLSHLQTAKLGATE--QRWASQLASFNFKIKYRPGKSNQNADALSRQYVDRFAIGTKVPPLRMELLESEPMVHKTGQCTEMVALAGRSALDLHLLQEADPVIGPVCKFRKEGRYPRAEEREALSSPTKALFRQWDRLLEKDGVLYRAVQPSGGGPETCQLLLPKHLQEEVLSSVHDDHGHQGVERTLKQLQSRCFWPGMAKHVERWCQQCRRCVLSKAVQPKIRAFQGTLQATRPHEILAIDFTLLEPASDGREN-VLVLTDVFTKYTQAIPTRDQRASTVAQVLVQHWFHRFGLPSRIHSDQGRNFESMLIQQLCNMYGIQKSRATAYRPQGNGQCERFNRTLHDLLR-TLPQSEKRRWPHYLSPMVFAYNTTPHQTTGKTPYYLMFG 1094
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000042253.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000503.1:15658:18693:-1 gene:ENSAMXG00000039114.1 transcript:ENSAMXT00000042253.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 397.127 bits (1019), Expect = 2.113e-116 Identity = 240/822 (29.20%), Postives = 403/822 (49.03%), Query Frame = 3 Query: 1275 EERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVT---RGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGA--MVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSR-----TKCDTCVQ----------CQMAHEEAKKGKIKTRL-LDSIREEGRSN---------------------------------------IQHGIVEEVRK---------KTMIPENELQETIKEIHRL--LCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKI 3527 EE L R+ L + +L+++I F + + RT L H I T + R E+ ++++ G+I +SPW+ P++ KK+ + R C+D+R+LNAVT+ ++P+P ID+ LD L GS +FSS+DL + Y+QV L E +EKTAFS + + F +PFG+ +P TF+ +M +VL I + +VYLDD++ + + + + L VL AI+ A L++NP KC ++++ + FLGH++S GV+TDP K +A++++ P K +RSF+G+ +YYRRFI + L WS+ F LK L AP+L + ++++ + AS +GAVLSQ +DG ERVIAY S + E+ YC+T +ELLAV HF+ Y+YG F LRTDH ++ ++M ++P Q WI+ + V +R G +H NAD +SR C C + C + G + ++ ++ IR+ R++ + G++ V + + +IP ++ +H H GV K ++ R+ + ++ V C++C K + P+ E + VD+ GP T +Y+L +D ++K+ A+ Q T ++ ++ RFG P+E+ D G+ FES +M E ++L I ++P H Q++G +ER F A + + + DW + LP V + Q+TTG +PA ++FG+++ Sbjct: 85 EEMLERSCVGLSEPQQLRLRDLIERFRASFAVSERECTRTSLAFHSINTGDAQTSGWQTAAARLAFAKRVAAEQLVRDMASAGVIEPSSSPWSAPVVLA-KKKDGNWRFCVDYRRLNAVTKLDSYPLPRIDDTLDQLSGSAWFSSLDLRSGYWQVPLAEGDREKTAFSLGSALWHFTVLPFGLCNSPATFERLMERVLSGIPRSCCVVYLDDVMAHGTDFDSALSHLEVVLGAIQAANLKLNPAKCNLLRQRVNFLGHVVSGAGVETDPKKTEAVRDWPVPRNAKMVRSFVGLASYYRRFIRGFRDVGGNASHLTR--PGVTFRWSDEAERAFGELKSRLCNAPVLAYRNVREASLWIRIASDRGLGAVLSQV-QDGSERVIAYYSRRLDKAERNYCVTCRELLAVVEGLKHFRPYVYGVPFLLRTDHASLQWLMRFREP-EGQLARWISRIQEFSFEVVHRPGRSHGNADALSRRPCVAVDCKHCARAEEKSAETAHCAAVSADVTGGVVVAQVSVEQIRDAQRADRDLMWAVHALEANVTPSWEEVVPLGPVAKALRSNWASFSLSDGVLCHVWEDPANGQRVFRVVIPRALRDSVLRGVHGSPGAGHFGVTKTLKRLRQRFYWPGCRTDVELFVHCCDVCAAKKGPARAPRAPLHPYQCGGPMERVAVDVLGPFPVTDSGNRYVLVAMDYFTKWPEAYAVPDQGAVTTADVLVREFFCRFGVPEELHSDQGRNFESEVMAEVCRILGIHKTRTTPLHPQSDGLVER-FNCTLAAQLAMVSSKGQRDWDKHLPVVLLACRSAVQETTGFTPALLMFGREL 900
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Match: ENSAMXT00000048272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000106.1:219951:223307:1 gene:ENSAMXG00000032559.1 transcript:ENSAMXT00000048272.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 380.563 bits (976), Expect = 6.606e-110 Identity = 186/487 (38.19%), Postives = 293/487 (60.16%), Query Frame = 3 Query: 1305 LKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKG--AMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTR 2756 L N+ +L ++++ G+VF D+GRT LV+H I + G P+ +P R + + + IQ E+G+ NS W +P++ V KK++ RLC+D+R LNA T + A+P+P I + L+ L + +FS++DL + Y+QV L +++ AF ++ G + +N MPFG+ AP TFQ +M +VL ++ +VYLDDI++ + L +V +A L++ P KC + + E+ +LGHI+S +G+ TDP K++ +Q + +P CV ++R F+G+ YYRRF+ D+A A+ L +L + + +W+ + FE LK +LT+ P+L +P ILDTDAS IGAVLSQ +DG ERV+AYGS ++S E+ YC TR+ELLAV F HF+ YL GR F +R+DH ++ +++ K+P Q W+ L+ D +V +R G +HQNAD++SR C T C M K+ R Sbjct: 35 LSANDRLELAQLLSTYGDVFSTGPTDLGRTSLVQHDIQLLPGPPVKQQPRRMAFEKQIESDAQIQQSLESGLASPSNSSWASPIVLVRKKDQT-YRLCVDYRALNARTVKDAYPLPRIQDTLETLSTAKWFSTLDLASGYWQVALTPRARKAVAFCSRKGLFTWNVMPFGLCNAPATFQRLMDRVLAGLQWETCLVYLDDIILLGKDVPEILQRLAQVFDRFRQANLKLKPTKCCLFRREVSYLGHIVSAQGIATDPEKVRKVQQWPQPTCVSEVRQFVGLAAYYRRFVQDFATIAKPLHELTK--KHVRFQWTPECQTAFEELKSSLTSTPVLGYPRDHGNLILDTDASNFGIGAVLSQV-QDGAERVLAYGSRRLSSTEQNYCTTRRELLAVVEFTRHFRQYLLGRPFIVRSDHSSLRWLVNMKEP-EGQLARWLEKLAEYDFQVVHRPGHHHQNADVMSRRPCRTTCPCNMTDPADVACKVTHR 516 HSP 2 Score: 106.686 bits (265), Expect = 1.800e-22 Identity = 61/241 (25.31%), Postives = 119/241 (49.38%), Query Frame = 3 Query: 2814 EVRKKTMIPENELQETIKEIH--RLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKIS 3530 E + ++P Q+ +++H + H GVE+ ++ RY + I R+C C T + P+ E I +D+ GP+ ET +YIL D ++K+ A+ T+ + + +W+ R+G P+ + D G FES + ++ ++L ++ ++P+ Q++GQ+ER T++ ++ AT +R DW + P ATK +TG +P ++FG++++ Sbjct: 641 EFHPQMILPRVFRQDVQQQMHDGPVGGHFGVERTLARVQTRYYWYQMREDITLWCRTCTSCAAKARPPKTPQAPMGTVRVGAPMERIAIDLMGPMNETDRHNRYILVAQDYFTKWVEAYALPNDQAVTVAEVLTSEWVCRYGAPQTLHSDQGSNFESEVFQKMCELLGVEKTRTTPFRPQSDGQVERFNATLQKIL-ATTAERCHWDWDLMTPFAVMAYRATKHSSTGLTPNMMLFGRELT 880
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009777.1 (pep scaffold:Pmarinus_7.0:GL476990:135790:139231:-1 gene:ENSPMAG00000008837.1 transcript:ENSPMAT00000009777.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 68.9366 bits (167), Expect = 2.175e-12 Identity = 54/237 (22.78%), Postives = 110/237 (46.41%), Query Frame = 3 Query: 2820 RKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHH-QTNGQIERQFRTIRDLIN-ATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKK 3524 RK+ ++ E + +I + H G + +++ Y K + + I++ + +CEIC K K+ ++ VK + +E++ +D+ GP T +++L I+D ++K+ LT +T Q + + RFG PK++ + + + + + E + +C H NG + +RD ++ AT + R DW L + F + +K T SP ++ G++ Sbjct: 59 RKRLVVMNEEDKRSILQRVHGADHCGQTRTRKLLEEHYYWKGMVNDIRDYINACEIC-KQKSYKRSSISHVKLLKASYPWEVLGMDLLGPFPATSRAHRFVLLIVDYFTKWAELTPMTDQSAAHVVAALTTA-FHRFGFPKKLFCNVSEEYVAQINEEMFR--HFPMCSGLAISHLWANGAHRGTSQALRDCVSKATGRHR---DWELQLEQRLFEYHTSKHSATRYSPFYLMLGRE 288
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004121.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107330:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004121.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 65.855 bits (159), Expect = 2.336e-11 Identity = 50/243 (20.58%), Postives = 110/243 (45.27%), Query Frame = 3 Query: 2814 EVRKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQF-------RTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK 3521 E R+ ++ E+E + + +H H G +K ++ Y + S ++ ++ SC +C+ + + +K + +E++ +D+ GPL T +Y+L +ID +SK+ + ++ +E + + L R+G P+++ GK F + + + T + C SP Q + + + + ++ +N + + +DW + + F K TT SP ++FG+ Sbjct: 66 ERRRMVVMDEDEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPS-MKLLKASGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHV-ASALTVVFCRYGFPRKVFSSLGKEFVTQVNKSSTLSRAYQRC--SPSQTQVHAHVSVRVALNKATNQALKGCVN-LVASQHPSDWESRVEQSLFEYRVGKHSTTQYSPFYLMFGR 302
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004123.1 (pep scaffold:Pmarinus_7.0:GL477387:93825:107321:1 gene:ENSPMAG00000003764.1 transcript:ENSPMAT00000004123.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 64.3142 bits (155), Expect = 7.235e-11 Identity = 52/248 (20.97%), Postives = 110/248 (44.35%), Query Frame = 3 Query: 2814 EVRKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFS------------SPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK 3521 E R+ ++ E+E + + +H H G +K ++ Y + S ++ ++ SC +C+ + + +K + +E++ +D+ GPL T +Y+L +ID +SK+ + ++ +E + + L R+G P+++ GK F + + K+ K C S + +H TN + ++ +N + + +DW + + F K TT SP ++FG+ Sbjct: 66 ERRRMVVMDEDEKRNILMSVHGA-GHFGQKKTILKLEADYYWLGMISDVKNLIASCGVCRNKGSRRVAMPS-MKLLKASGPWEVLGLDVLGPLPVTSRANRYLLLLIDYFSKWAEAVPLIEKSQEHV-ASALTVVFCRYGFPRKVFSSLGKEF----VTQVNKIQHKKWCISHTLQNLCETRGPAGWHKATN-------QALKGCVN-LVASQHPSDWESRVEQSLFEYRVGKHSTTQYSPFYLMFGR 298
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010393.1 (pep scaffold:Pmarinus_7.0:GL485791:8073:10868:-1 gene:ENSPMAG00000009411.1 transcript:ENSPMAT00000010393.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.2914 bits (116), Expect = 3.370e-7 Identity = 28/98 (28.57%), Postives = 47/98 (47.96%), Query Frame = 1 Query: 205 KSYARVVYQEPQGRVQYKKKEQREESIRREMPECWLCHKIGHTKIDCP-----IKGKIECWTCHRSGHISRNCPDKKAP----RCFGCGKEGHIRRLC 471 KS+ Y+ +G ++ ++S+ C+ C K GH +CP G C+TC + GH++R C +C+GCG+ GH++R C Sbjct: 4 KSFTDGCYRCGEGGHIARECPLPQDSVSSNTAACYNCGKGGHIARECPEGRQDRGGGPSCYTCGKQGHLARECSSGGGGPGDNKCYGCGQRGHMQRDC 101
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Match: GIS2 (Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2 [Source:SGD;Acc:S000005199]) HSP 1 Score: 52.7582 bits (125), Expect = 3.845e-8 Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 Query: 304 CWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKA---PRCFGCGKEGHIRRLCQEIRCERCSRNGHRSEEC 525 C++C KIGH DC + C+ C++ GH+ +C + +C+ CG+ GH+R C RC C++ GH S EC Sbjct: 6 CYVCGKIGHLAEDC--DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQRCFNCNQTGHISREC 80 HSP 2 Score: 49.2914 bits (116), Expect = 6.159e-7 Identity = 32/109 (29.36%), Postives = 51/109 (46.79%), Query Frame = 1 Query: 292 EMPECWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKK--------------AP----------------RCFGCGKEGHIRRLCQEIR-CERCSRNGHRSEEC 525 E +C+ C + GH + +C ++ C+ C+++GHISR CP+ K P +C+ CG+ GH+ R CQ R C C+ GH S++C Sbjct: 45 EFKQCYNCGETGHVRSECTVQ---RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150 HSP 3 Score: 46.595 bits (109), Expect = 4.791e-6 Identity = 27/86 (31.40%), Postives = 41/86 (47.67%), Query Frame = 1 Query: 304 CWLCHKIGHTKIDCPIKGKIE---CWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQE---------IRCERCSRNGHRSEEC 525 C+ C+K GH + DC + +E C+ C +GH+ C RCF C + GHI R C E + C +C H +++C Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC---TVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC 107
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Match: AIR2 (RNA-binding subunit of the TRAMP nuclear RNA surveillance complex; involved in nuclear RNA processing and degradation; involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p; stimulates the poly(A) polymerase activity of Pap2p in vitro; has 5 zinc knuckle motifs; AIR2 has a paralog, AIR1, that arose from the whole genome duplication; Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome [Source:SGD;Acc:S000002334]) HSP 1 Score: 48.521 bits (114), Expect = 7.880e-6 Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1 Query: 157 TLMDK-VEKQREQINSMKSYARVVYQEPQGRVQYKKKEQREESIRREMPECWLCHKIGHTKIDCPIKGKIECWTCHRS-GHISRNCPDKKAPRCFGCGKEGHIRRLC----QEIRCERCSRNGHRSEEC 525 T DK V E++NS + R + QGR + + +++I+ P+C C + GH K DCP I C C + H SR+CP KA +C C + GH R C ++++C C H E C Sbjct: 16 TPPDKLVAPSIEEVNSNPNELRAL--RGQGRY-FGVSDDDKDAIKEAAPKCNNCSQRGHLKKDCP---HIICSYCGATDDHYSRHCP--KAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERC 136
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO33875 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SR01]) HSP 1 Score: 57.7658 bits (138), Expect = 4.243e-10 Identity = 27/86 (31.40%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 1890 DDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNY 2147 DD++ + SS E+H + +L+A+ +G + + +K Q ++FLGH+I + GV+ P K+ I+ + P ++LR F+G+C + Sbjct: 1 DDVICFHSSFEEHLRGIERMLQAVRASGFK-SIKKSQFATRSVKFLGHVIDQNGVRPQPEKLD-IRQWETPTNEEELRKFIGVCTF 84
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO34570 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SP17]) HSP 1 Score: 50.447 bits (119), Expect = 1.558e-7 Identity = 27/75 (36.00%), Postives = 36/75 (48.00%), Query Frame = 1 Query: 304 CWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQ-EIRCERCSRNGHRSEEC 525 C CH++GH CP++G+ C+ C +GH+ CP P C C + GH C RC RC GH C Sbjct: 19 CGYCHQVGHPISTCPVRGR--CFRCGAAGHVVARCPAPAVP-CGYCHQVGHPISTCPVRGRCFRCGAAGHVVARC 90 HSP 2 Score: 46.2098 bits (108), Expect = 5.941e-6 Identity = 27/81 (33.33%), Postives = 35/81 (43.21%), Query Frame = 1 Query: 304 CWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLC--QEIRCERCSRNGHRSEECYTKMR 540 C+ C GH CP + C CH+ GH CP + RCF CG GH+ C + C C + GH C + R Sbjct: 1 CFRCGAAGHVVARCP---ALACGYCHQVGHPISTCPVRG--RCFRCGAAGHVVARCPAPAVPCGYCHQVGHPISTCPVRGR 76
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO42408 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1Q3]) HSP 1 Score: 51.6026 bits (122), Expect = 9.225e-7 Identity = 24/72 (33.33%), Postives = 45/72 (62.50%), Query Frame = 3 Query: 939 LDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGG 1154 LDTGA + +S+N +NKL +Q +S +LR N+STI+ +G+ K+ T ++++V F + ++ ++ G Sbjct: 115 LDTGATCSTLSLNDYNKLTKKQPEQSQTELRTYNQSTIKPMGQVKLHCTANGITRKVHFQIIKEAPTSLLSG 186
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Match: EDO25785 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A8DVH4]) HSP 1 Score: 45.0542 bits (105), Expect = 8.999e-6 Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 1 Query: 250 QYKKKEQREESIRREMPECWLCHKIGHTKIDCPIKGK-IECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLC 471 +Y K+E+R IR C C++ GH +DCP K I+C C GH R+CP++ CF C + GH R+C Sbjct: 2 RYYKEEKRSMYIR-----CHNCNERGHMAVDCPDPKKVIKCCLCGGQGHYKRSCPNE---LCFNCDQPGHQSRVC 68
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000032171.1 (pep primary_assembly:ASM223467v1:18:2114932:2117958:1 gene:ENSORLG00000025397.1 transcript:ENSORLT00000032171.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 416.001 bits (1068), Expect = 5.676e-123 Identity = 248/830 (29.88%), Postives = 426/830 (51.33%), Query Frame = 3 Query: 1296 LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLG--KIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCS----------GPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEK---GYCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTC--------------------VQCQMAH---------------EEAKKGKIKTRLLDSI-------------REEGRSNIQHGIVEE----------VRKKTMIPENE------------LQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKK 3524 LE L + K + ++ NVF A + D+G T L+ H+I + P+ + R P + +++ I L +G+IR+ NSP+ +P++ KK+ +R+C+D+RQLN+ T R AFP+P IDE LD L G+ +F+++DL + Y QV + E + KTAF T G + +NRMPFG+ APGTFQ +M ++ G + + ++YLDDI+++SS+ ++H L VL +++ LR+ KC ++E+R+LGH+IS +GV TDP KI+A+ + P+ V +LR+FLG +YYRRF+ +A+ A L +L S+ + W+ F+ LK LT+AP+L + D F L+ DAS + +GAV Q ++ G R IAY S + + E+ Y + E LA+ + F+ YL G + TD+ ++++ T K + Q W+ L++ D ++YR G ++NAD +SR + VQ +AH E + ++ +L S+ EG S + ++ + V ++ ++P++ + E ++++H+ H G+E+ ++ R + + ++CE CQ K + + P+ + E++ +D L ++ + +L + D +SKY V Q T+ K ++ +W +FG P + D G++FES ++++ + I+ ++PYH NGQ ER RT+ +L+ A LQ +K DW LP+V F N T +TTG+SP +FG++ Sbjct: 175 LETLPAEDRGKAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDGS-LRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCTPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLVGELDGTKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFFLEVDASHNGLGAVFPQ-EQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK--LGEMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPDSGQEVFQLLLPEILIPEVLEQVHQHHGHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIASRPNELVAMDFTI-LEPSRTGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLRA-LQVTRKRDWHSCLPQVTFCYNTTPHQTTGESPFFFMFGQQ 998
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000029819.1 (pep primary_assembly:ASM223467v1:24:6358775:6362914:-1 gene:ENSORLG00000022361.1 transcript:ENSORLT00000029819.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 424.476 bits (1090), Expect = 7.835e-123 Identity = 262/884 (29.64%), Postives = 449/884 (50.79%), Query Frame = 3 Query: 1296 LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGA--MVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKL----------EWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKG---YCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKG----------------------------------------------------INHQNADMVSRTKCDTCV---------QCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIV---------EEVRKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK--KISREKWYGSKEIPIKEELEE-----QTRRKF---NVGEEVLVKVETRHKGQD 3656 L L E K++ ++ VF + D+G T L+ H+I + P+ + R P + +E I NL ++ +IR+ +SP+ +P++ + KK+ +RLC+D+RQLN+ T + AFP+P I+E LD L G+ +FS++DL + Y+QV + E + KTAF T G + +NRMPFG+ AP TFQ +M ++ G+ +G ++YLDDI+++SS+ E+H L VL+ ++ GL++ KC + ++ +LGH+IS +GV TDP K++A+ N+ P V +LRSF+G +YYRRF+ +AK A L +L + K+ W+E FE LK LTT P+L + D + FIL+ DAS +GAVLSQ +++GK R IAY S + E+ Y R E LA+ + F+ YL G++ + TD+ ++++ T K + + Q W L++ D+ + YR G +H +DM S D + Q + + EE ++ + + L +R+ R Q G++ E + ++P + +E + +H+ H GV++ D ++ R + +++ E CE CQ K + P+ + + EI+ +D L T + +L I D +SKY + A Q T+ + ++ +W +FG P I D G++FES ++++ + ++ ++PYH + NGQ ER RT+ DL+ TL +K DW LP++ ++ N T +TG+SP ++FG+ ++ + G + P++ ++E + R K E++L + R +G D Sbjct: 301 LSALSAGEQEKVRALLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDG-GLRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQ-EQEGKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLPMSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQ--LSSPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQEPRLPVDFLLGRVQEPVEGTVQEWVQEHKARLKLAFEGTREKLLAAADRRKRGHD 1176
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000039099.1 (pep primary_assembly:ASM223467v1:16:31928608:31932747:-1 gene:ENSORLG00000023909.1 transcript:ENSORLT00000039099.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 424.476 bits (1090), Expect = 7.909e-123 Identity = 262/884 (29.64%), Postives = 449/884 (50.79%), Query Frame = 3 Query: 1296 LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGA--MVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKL----------EWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKG---YCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKG----------------------------------------------------INHQNADMVSRTKCDTCV---------QCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGIV---------EEVRKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK--KISREKWYGSKEIPIKEELEE-----QTRRKF---NVGEEVLVKVETRHKGQD 3656 L L E K++ ++ VF + D+G T L+ H+I + P+ + R P + +E I NL ++ +IR+ +SP+ +P++ + KK+ +RLC+D+RQLN+ T + AFP+P I+E LD L G+ +FS++DL + Y+QV + E + KTAF T G + +NRMPFG+ AP TFQ +M ++ G+ +G ++YLDDI+++SS+ E+H L VL+ ++ GL++ KC + ++ +LGH+IS +GV TDP K++A+ N+ P V +LRSF+G +YYRRF+ +AK A L +L + K+ W+E FE LK LTT P+L + D + FIL+ DAS +GAVLSQ +++GK R IAY S + E+ Y R E LA+ + F+ YL G++ + TD+ ++++ T K + + Q W L++ D+ + YR G +H +DM S D + Q + + EE ++ + + L +R+ R Q G++ E + ++P + +E + +H+ H GV++ D ++ R + +++ E CE CQ K + P+ + + EI+ +D L T + +L I D +SKY + A Q T+ + ++ +W +FG P I D G++FES ++++ + ++ ++PYH + NGQ ER RT+ DL+ TL +K DW LP++ ++ N T +TG+SP ++FG+ ++ + G + P++ ++E + R K E++L + R +G D Sbjct: 301 LSALSAGEQEKVRTLLGKYLTVFSLHEGDLGCTSLITHEIPLVDDAPVRQRYRRIPPSDYVAAKEHINNLLQSQVIRESSSPFASPIVLIRKKDG-GLRLCVDYRQLNSRTRKDAFPLPRIEESLDALSGARWFSTLDLASGYHQVAVAEADRPKTAFCTPFGLFEWNRMPFGLCNAPSTFQRLMQRMFGEQQGQSLLLYLDDIIVFSSTIEQHLERLELVLERLQLEGLKVKLAKCAFFQHQVHYLGHVISDQGVSTDPGKVEAVANWEPPTTVFQLRSFIGFASYYRRFVEGFAKLAAPLHRLVAELEGNKVRKKSARGLTNHWTEECQRSFEALKAKLTTTPVLAYADFSRPFILEVDASNGGLGAVLSQ-EQEGKVRPIAYASRGLRPTERNPVNYSSMRLEFLALKWAVAEKFREYLLGQKCIVYTDNNPLSYLSTAK--LGAMEQRWAAQLAAFDLEIRYRSGRSNRNADALSRQHFPDMQAWRDVLPGSCLPMSLQQVQQTETVGTTQATMVALPHHSPSDMASLQGADPVLKEFLPFWERQTRPSPEERRQ--LSSPTLALLRQWNRLVEQGGVLYRRVFRDDGGEAVLQILLPGSIREEVLTAVHQQHGHQGVDRTLDLLRQRCYWPGMSAEVAEWCSQCERCQVAKVTRPAARAPMGHLLASKPNEILAMDFSV-LEPTTSGIENVLVITDIFSKYTMAVATRDQRAATVAQVLVTEWFSKFGVPARIHSDQGRSFESALIQQLCDLYAVEKSRTTPYHPEGNGQCERFNRTLHDLLR-TLPVSRKRDWNVCLPQLLYSYNTTPHHSTGESPFFLMFGQEPRLPVDFLLGRVQEPVEGTVQEWVQEHKARLKLAFEGTREKLLAAADRRKRGHD 1176
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000041674.1 (pep primary_assembly:ASM223467v1:5:30088905:30092924:1 gene:ENSORLG00000022054.1 transcript:ENSORLT00000041674.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 422.935 bits (1086), Expect = 1.331e-122 Identity = 266/907 (29.33%), Postives = 460/907 (50.72%), Query Frame = 3 Query: 1296 LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLG--KIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCS----------GPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEK---GYCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTC--------------------VQCQMAH---------------EEAKKGKIKTRLLDSI-------------REEGRSNIQHGIVEE----------VRKKTMIPENE------------LQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK--KISREKWYGSKEIPIK-------EELEEQTRRKFNVGEEVLVKVETRHK-GQDRY--EGPYKVIEKVHDRRYILRN 3719 LE L + K + ++ NVF A + D+G T L+ H+I + P+ + R P + +++ I L +G+IR+ NSP+ +P++ KK+ +R+C+D+RQLN+ T R AFP+P IDE LD L G+ +F+++DL + Y QV + E + KTAF G + +NRMPFG+ APGTFQ +M ++ G + + ++YLDDI+++SS+ ++H L VL +++ LR+ KC ++E+R+LGH+IS +GV TDP KI+A+ + P+ V +LR+FLG +YYRRF+ +A+ A L +L S+ + W+ F+ LK LT+AP+L + D FIL+ DAS + +GAVLSQ ++ G R IAY S + + E+ Y + E LA+ + F+ YL G + TD+ ++++ T K + + Q W+ L++ D ++YR G ++NAD +SR + VQ +AH E + ++ +L S+ EG S + ++ + V ++ ++P++ + E ++++H+ H G+E+ ++ R + + ++CE CQ K + + P+ + E++ +D L ++ + +L + D +SKY V Q T+ K ++ +W +FG P + D G++FES ++++ + I+ ++PYH NGQ ER RT+ +L+ A RK+ DW LP+V F N T +TTG+SP ++FG+ ++ + G + P+ EE + + R F+V ++ L + R K D++ E P + V R Y +R Sbjct: 267 LETLPAEDRGKAQALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDGS-LRMCVDYRQLNSKTRRDAFPLPRIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCIPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERLELVLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLVGELDGTKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFILEVDASHNGLGAVLSQ-EQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK--LGAMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDQRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPDSGQEVFQLLLPEILIPEVLEQVHQHHGHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIASRPNELVAMDFTI-LEPSRTGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLCGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLRALPVTRKR-DWHSCLPQVTFCYNTTPHQTTGESPFFLMFGQQPRLPIDFMLGQVKEPVNGTIHEWVEEHQARLRVAFDVAKDRLAEAAARRKRNHDKHVQEAPLDEGQLVLLRDYSVRG 1167
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Match: ENSORLT00000032005.1 (pep primary_assembly:ASM223467v1:7:31190450:31194463:1 gene:ENSORLG00000029990.1 transcript:ENSORLT00000032005.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 422.55 bits (1085), Expect = 2.078e-122 Identity = 267/907 (29.44%), Postives = 461/907 (50.83%), Query Frame = 3 Query: 1296 LEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKI-VTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLG--KIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCS----------GPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEK---GYCITRKELLAVYYFCIH-FKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTC--------------------VQCQMAH---------------EEAKKGKIKTRLLDSI-------------REEGRSNIQHGIVEE----------VRKKTMIPENE------------LQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGK--KISREKWYGSKEIPIK-------EELEEQTRRKFNVGEEVLVKVETRHK-GQDRY--EGPYKVIEKVHDRRYILRN 3719 LE L + K + ++ NVF A + D+G T L+ H+I + P+ + R P + +++ I L +G+IR+ NSP+ +P++ KK+ +R+C+D+RQLN+ T R AFP+P IDE LD L G+ +F+++DL + Y QV + E + KTAF T G + +NRMPFG+ APGTFQ +M ++ G + + ++YLDDI+++SS+ ++H L VL +++ LR+ KC ++E+R+LGH+IS +GV TDP KI+A+ + P+ V +LR+FLG +YYRRF+ +A+ A L +L S+ + W+ F+ LK LT+AP+L + D FIL+ DAS + +GAVLSQ ++ G R IAY S + + E+ Y + E LA+ + F+ YL G + TD+ ++++ T K + + Q W+ L++ D ++YR G ++NAD +SR + VQ +AH E + ++ +L S+ EG S + ++ + V ++ ++P++ + E ++++H+ H G+E+ ++ R + + ++CE CQ K + + P+ + E++ +D L ++ + +L + D +SKY V Q T+ K ++ +W +FG P + D G++FES ++++ + I+ ++PYH NGQ ER RT+ +L+ A RK+ DW LP+V F N T +TTG+SP ++FG+ ++ + G + P+ EE + + R F+V ++ L + R K D++ E P + V R Y +R Sbjct: 267 LETLPAEDRGKARALLQKYANVFAAHEGDLGCTTLMTHEIPLLDDAPVRQRHRRIPPSEYEAVKDHINQLLASGVIRESNSPYASPIVLARKKDGS-LRMCVDYRQLNSKTRRDAFPLPPIDESLDALSGARWFTTLDLASGYNQVPVTEGDRAKTAFCTPFGLFEWNRMPFGLCNAPGTFQRLMQRIFGDQQCQSVLLYLDDIVVFSSTIDEHLERL--VLGRLQQEKLRVKLPKCAFFQQEVRYLGHVISDQGVSTDPHKIEAVAGWQPPSTVSELRTFLGFASYYRRFVEGFARLAAPLHRLVGELDGTKSRRRKASSLQGHWTTECQQNFDALKQKLTSAPVLAYADFTLPFILEVDASHNGLGAVLSQ-EQGGSVRPIAYASRGLKATERNMQNYSSMKLEFLALKWAMTEKFREYLLGHHCVVFTDNNPLSYLSTAK--LGAMEQRWVAQLAAFDYEIKYRSGRVNRNADALSRHPNHSSAEVGNMAPGSSLPRDLQQVQVQPVLAHCEMEQLMPVFPQRTTAEVQDLQVSDPVLASVLPFWRDKRYPNYSEREGLSKVALTLLRQWKNLAEVDGLVYRRVLMPDSGQEVFQLLLPEILIPEVLEQVHQHHGHQGIERTLALLRARCYWPGMSKDVAHWCQACERCQLAKDNSRSHSAPLGHLIASRPNELVAMDFTI-LEPSRTGVENVLVLTDVFSKYTVAIPTRDQRAATVAKVLVAEWFSKFGVPARLHSDQGRSFESQLIQQLRGLYGIEKSRTTPYHPAGNGQCERFNRTLHNLLRALPVTRKR-DWHSCLPQVTFCYNTTPHQTTGESPFFLMFGQQPRLPIDFMLGQVKEPVNGTIHEWVEEHQARLRVAFDVAKDRLAEAAARRKRNHDKHVQEAPLDEGQLVLLRDYSVRG 1165
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1) HSP 1 Score: 1250.34 bits (3234), Expect = 0.000e+0 Identity = 617/1048 (58.87%), Postives = 788/1048 (75.19%), Query Frame = 3 Query: 771 RVSEKVYRFLKR-------EMFEEEVER-IGTIETEQVVEILYNRMQGRPSITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQHGI--VEEVRK---------------------KTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRKKTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSKEIPIKEELEE------------QTRRKFNVGEEVLVKVETRHKGQDRYEGPYKVIEKVHDRRYILRNEDGKRIERNVEKLKNFLRRG 3779 R EK+Y+FLK+ E+ E+ E+ I ++E ++ I YN MQGRPS T+ + G DCLLDTGARINVM+ + ++L ++ ++ + LRCAN S +ET+GK + V +G++ + V FI+ + + P++IGG+ELQ FG L I +E EK ++IC IEA+FGR I DEERL A++ LK+ + +L EI + NVFMADKWD+G T+L+KHKI+T+GEPI IKP RQP+NLE KIEEAI+NL NGIIRKCNSPWNTPL+CVWKKEKKDIRLCLDFRQLN +TERQAFPMPN+DE+LD+L GS +FSSIDLGNAYYQV+L++ESQEKTAFSTK GQ+CFNRMPFGIAAAPGTFQE+MTKVL + G MVYLDDILI++ ++E HY I G+VL I AGLR+NPEKCQI ++E++FLGHII+K+G+QTD +KI+AIQ+F KP CVK LRSFLGICNYYRRFI DYAKKAR LE +C G +N+K+ W+E F +K AL TAP+L FPD +KEFILDTDASFDTIGAVLSQ+D+ G E VIAYGSH+M+SHEKGYCITRKELLA+YYFC HF HYLYG+RF LRTDHKAITFM+TTKKPIT+QFQTWINYLSSLDI++EYRKG +H NADM+SR C TCVQC M HE+AK GKIKTR+L E G + Q+ V+E++ K IP + Q IKE+H LLCHAG +K+ Y+++ ++L +++++++ +CE CQK K +T TKE + S E FE I++DICGPL ET +KKYI GIID YSKY LTAI KQDE TI +T+L KWIL+FG PKE+ VDCGK FE+ ++E K I+L FSSPYHH TNG IERQFRTIR+ INA+L + + +WA+I+PE+++TLNAT QKTTG SPAEI+FG+KI R KWY +KEI +E++E+ +T R F + + VL+K E R+K R+EGPYKVI+K+H+R Y+L++++GK + RNVEK+K+F + G Sbjct: 2501 RTIEKIYKFLKKNGDVCINEIVEDTREQNILSVEEQKSPAITYNIMQGRPSTTLDIQGRKVDCLLDTGARINVMAKSVIDRLENIEILETRESLRCANNSRLETMGKLNINVKMGSMERNVTFIIVKNLIPEIIGGVELQRLFGIELKCI--LEEHEKRSDFICEIEARFGRIITDEERLRHAIDVLKVTGNKRLLEIFQANKNVFMADKWDIGCTNLIKHKIITKGEPIMIKPRRQPINLEDKIEEAIKNLENNGIIRKCNSPWNTPLVCVWKKEKKDIRLCLDFRQLNKITERQAFPMPNVDEILDILHGSRYFSSIDLGNAYYQVKLDKESQEKTAFSTKEGQFCFNRMPFGIAAAPGTFQELMTKVLKDLWKDGVMVYLDDILIFTKTEEDHYNIFGKVLGKIATAGLRLNPEKCQIFRKEVKFLGHIINKDGIQTDNTKIEAIQSFQKPKCVKNLRSFLGICNYYRRFIKDYAKKARALESIC-GKNNEKIRWTEMCEKAFGEMKEALITAPVLVFPDFRKEFILDTDASFDTIGAVLSQKDEKGHEHVIAYGSHAMSSHEKGYCITRKELLAIYYFCKHFNHYLYGKRFVLRTDHKAITFMVTTKKPITAQFQTWINYLSSLDIKMEYRKGTSHTNADMLSRKTCGTCVQCMMEHEDAKTGKIKTRILTVTAEGGYNKWQNDNMEVQEIKNKLENKDCKFIMENNTVLTKQGKIWIPSDNRQRMIKEVHVLLCHAGAQKVTKYIQNNCDMENLATEVKKVIENCERCQKMKTITTKTKEETQTIKSTEPFEKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPYHHNTNGIIERQFRTIREYINASLNEGGRKNWADIVPEIKYTLNATVQKTTGVSPAEIIFGRKIDRMKWYSNKEIN-REDMEKRIEDKTLKPKISKTVRNFEMEDVVLIKQEIRNKDDARWEGPYKVIKKIHERSYLLKDQNGKMVVRNVEKIKHFKKGG 3544 HSP 2 Score: 97.8265 bits (242), Expect = 8.866e-20 Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 1 Query: 91 KEVEKEVILRKIKSTEEIKETLTLMDKVEKQREQINSMKSYARVVYQEPQGRVQYKKKEQREESIRREMPECWLCHKIGHTKIDCPIKGKIECWTCHRSGHISRNCPDKKAPRCFGCGKEGHIRRLCQEIRCERCSRNGHRSEECYTKM---RYGQATERQRFTGNRYSR 591 +EV KE+ ++ +K+ E+IKET+ ++KV K EQ+N+++S + G Y+ Q + +RE+ E W K + +K IECWTC + GH SR C K+ +C+ CG EGHIRR C I+C RC+ GH+ ECYT M G+ ++++ +G R R Sbjct: 2245 QEVRKEIEMKDLKTAEQIKETIKKIEKVNKVIEQVNTVRSI-----RPTTGGRTYRDVVQVGAT-KREINE-W--------KPETRVK-MIECWTCQKPGHSSRECNIKRRFQCYACGVEGHIRRECPTIKCHRCNARGHKERECYTNMERRNQGRDRDQRKMSGGRIQR 2398
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000081257.1 (SMESG000081257.1) HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0 Identity = 347/884 (39.25%), Postives = 495/884 (56.00%), Query Frame = 3 Query: 864 EILYNRMQGRPSITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLR--CANESTIETIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNIQ--------------------HGIVEEVRKKTM-----------------------------IPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNG 3356 ++++ + R + +NG + + L ++GA I+VMS C+ + L S L +NE + +G K+ +E+ I+ K+ P+ IGG++ + FG L ++ +IE+S +K + D +RL L LK++++S+L +I+ N+FMA ++D+G T ++ H++ T G PI P QP++LE+K+EE +QNL E G++RKC SPWNTPL+ V K + +R+CLDFR LN+VTE+ +FPMP++ +LD LG S F SIDLG AYY VEL E SQ KTAFSTK GQ+CFNR+PFG++ AP TFQ++M ++L + KG +VYLDDILIY ++E H +L EV I ++GL++NPEKC K + F+GH +S++G+QT+ KI I+N +P +LRSFLG+ YYRRFI +Y+ A L +G +K + W+E F LK L APIL +P + FI+DTD SF+ IG +T HE GYC+TRKELL ++ F +HF+ YLYGRRF RTDHKA+TFM TTKKPI+ QFQTW+ S D ++YRKG H NA SR C QM H++AKK K +TR ++S+ +G SNI +G + KT+ +P++ ++ + H LCH G+ K Y+KD + + I E + C+IC K TKE + + + E I VDI ETK KKY++ IID +SK L QDE TI IL WI RFG P+ I D + FE M R++ + IK FSSPY HQ+NG Sbjct: 274 DVMFKKDDDRKWSIMEINGFHVEMLWNSGASISVMSEKCWRLIGSPILMDSRILLSEVFSNEDK-KPLGSVKIVAKWNKKFRELNVIIVRKIHPNFIGGVDTMKIFGMELKEVNNIESSLVNKRFT------------DSDRLKNTLLTLKLDKNSELGTLISQFSNIFMASRFDLGHTKVITHELKTSGPPILQNPRGQPMHLEAKVEELVQNLLEAGVVRKCQSPWNTPLVIVGKPDG-SVRICLDFRLLNSVTEKFSFPMPDMQLLLDCLGKSKIFYSIDLGQAYYLVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDDILIYGENQETHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFIGHTVSEKGIQTNKRKISEIENATEPKSTTELRSFLGLTTYYRRFIKNYSMIAAPLYAATTG-CDKMIVWTEECRKRFINLKKLLCEAPILEYPRADRLFIIDTDDSFEAIG--------------------HLTKHEIGYCVTRKELLVLHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANFSEYDFALQYRKGNEHGNAGGWSRLNNTICSHYQMEHKDAKKAKCRTRCINSL--QGSSNIMKIIKQKQNEDKVTSQIISHLNGNEAHISYKTISSSIFKYLKILQIQDNVLMINTDGKLAVVVPDSYVKSLVNYFHIELCHLGINKTLFYLKDFFFLPSMNQIITECINKCKICASRKIDQGRTKEILLPRTGERFLEQIVVDI--DYMETKESKKYMIVIIDCFSKLVSLP----QDEATILNVILNNWIYRFGRPESILTDRERIFEGSMFRDWMEKFGIKQEFSSPYQHQSNG 1114
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000016546.1 (SMESG000016546.1) HSP 1 Score: 522.316 bits (1344), Expect = 1.786e-166 Identity = 259/461 (56.18%), Postives = 325/461 (70.50%), Query Frame = 3 Query: 1233 ICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKIKGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYL 2615 +CNI+AKFG+ I ER RA ++LK+N + L EII N+ NVFMA+KW++G T L+KHKIVTRG INIKP RQP++LE KIEEAIQNL++NGII+ LN VT+RQA+PM NI E+LD G F+SIDLGNAYYQVELEE+S+EKTAFST GQYCFNRMPFGIA PGT QE+M KVLG I G +VYL+DILI++++KE++Y +L +V++ I + +AI++F KP C+K L+SF GICNYYRRFI DYAKK R LE+LC G N KL W+E FE +K ALT +P+L +PD ++FI+DTD+SFDTIG VLSQ+D +G E+VIAYGSH+M++HEKGYCI RKELLA+YYFC HF H+LYG+RFTLRTD KAITFM++TKKPIT+QF+TWIN+L Sbjct: 113 MCNIDAKFGKLITGTERFDRARKELKVNY-TVLAEIIKNNQNVFMANKWEIGCTALLKHKIVTRGSLINIKPRRQPIHLEPKIEEAIQNLFKNGIIK----------------------------NLNLVTDRQAYPMQNIAEILDRFEGEKHFNSIDLGNAYYQVELEEKSKEKTAFSTTTGQYCFNRMPFGIATGPGTSQELMRKVLGNINGTVVYLNDILIFTATKEQYYAVLNDVIERI-----------------------------------GRPEAIKSFQKPECIKNLKSFPGICNYYRRFIKDYAKKTRTLEELC-GKYNVKLIWAENCEKAFEDMKKALTESPVLGYPDFTRDFIIDTDSSFDTIGDVLSQKDNNGYEKVIAYGSHAMSTHEKGYCIKRKELLAIYYFCQHFNHHLYGKRFTLRTDLKAITFMLSTKKPITAQFKTWINHL 508
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000038955.1 (SMESG000038955.1) HSP 1 Score: 445.662 bits (1145), Expect = 6.767e-134 Identity = 259/636 (40.72%), Postives = 372/636 (58.49%), Query Frame = 3 Query: 906 VRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIE---TIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKF-GRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAITFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSNI 2795 + +NG + D L D+GA I+VMS + + +L G+ + D ++R + + E +G K+ + +K+V F + +++ G A E + NIE+ +K D +RL L LK++++SKL +I+ N+FMA ++D+G T ++ H+I ++P++LE K+EE +QNL E G++RK SPWNTPL+ V K + IR+CLDFR LN+VTE+ +F P++ +LD LG S FSSIDLG AYYQVEL E SQ KTAFSTK GQ+CFNR+PFG++ AP TFQ++M ++L + KG +VYLD+ILIY ++E H +L EV I ++GL++NPEKC K + F+GH ++Y+ A + +G ++K + W+E + F LK L APIL +P + F++DTDASF IGAVLSQ +D E VIAYGS +T HE G+C+T KELLA++ F +HF+ YLYGRRF RTDHKA+TFM TTKKPI+ QFQTW+ LS D ++YRKG H NAD SR C C M +++AK+ K +TR ++S+ +G SNI Sbjct: 1 MEINGFHVDMLWDSGASISVMS-DKYWRLIGRPILM-DSRIRLSGVFSKEDEKPLGSVKI---VAKWNKKVSFHRRSRHHENILHG------------------AKE-----VNNIESLLVNKKFTDSDRLKITLSTLKLDKNSKLGTLISKFSNIFMASRFDLGHTKVITHEI-----------KKKPMHLEGKVEELVQNLLEAGVVRKSISPWNTPLVIVGKLDG-SIRMCLDFRLLNSVTEKFSFYSPDMKLLLDCLGNSKIFSSIDLGQAYYQVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKGVVVYLDEILIYGENQEIHDKLLFEVFTRIRDSGLKVNPEKCAFNKSVLNFIGH-------------------------------------------TNYSIIAAPMYVATTG-NDKMIVWTEECRNSFINLKKLLCEAPILEYPRADRLFVIDTDASFGAIGAVLSQIKEDCTEVVIAYGSRHLTKHEMGHCVTIKELLALHEFIVHFRQYLYGRRFVARTDHKALTFMNTTKKPISPQFQTWMANLSEHDFALQYRKGEEHGNADGKSRLNNTKCSHCLMENKDAKEAKCRTRYINSL--QGSSNI 550 HSP 2 Score: 95.1301 bits (235), Expect = 3.706e-19 Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 3 Query: 3237 PKEIRVDCGKAFESGMMREFTKMLEIKLCFSSPYHHQTNGQIERQFRTIRDLINATLQDRK-KTDWAEILPEVEFTLNATKQKTTGKSPAEIVFGKKISREKWYGSKEI-PIKEELEEQTRRKFNVGEEVLVKVETRHKGQD 3656 P+ I D G FE M R++ + IK FSSPY HQ+N ER RT+RD++ +L + K K +W +LP +EF+ NAT Q +T SP EIV+G+KI+ + G + I +EE+E++T+ LVK T + +D Sbjct: 616 PESILTDRGIIFEGSMFRDWMEKFGIKQEFSSPYQHQSNILAERIIRTVRDMLATSLAEIKTKNNWCRLLPRIEFSFNATIQNSTKFSPFEIVYGRKINL--YSGVEHIQKFREEIEDETKTN-------LVKAATTMQNRD 748
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Match: SMESG000065302.1 (SMESG000065302.1) HSP 1 Score: 391.734 bits (1005), Expect = 4.763e-117 Identity = 274/853 (32.12%), Postives = 409/853 (47.95%), Query Frame = 3 Query: 870 LYNRMQGRPSITVRMNGENFDCLLDTGARINVMSVNCFNKLRGQQLTKSDDKLRCANESTIE---TIGKTKVQVTIGNVSKEVIFIVAEKVTPDVIGGIELQETFGFRLLKIKDIEASEKDKNYICNIEAKFGRKIKDEERLIRALEQLKINEDSKLKEIITNSGNVFMADKWDVGRTHLVKHKIVTRGEPINIKPYRQPLNLESKIEEAIQNLYENGIIRKCNSPWNTPLICVWKKEKKDIRLCLDFRQLNAVTERQAFPMPNIDEMLDLLGGSVFFSSIDLGNAYYQVELEEESQEKTAFSTKNGQYCFNRMPFGIAAAPGTFQEMMTKVLGKI--KGAMVYLDDILIYSSSKEKHYTILGEVLKAIEEAGLRINPEKCQIIKEEIRFLGHIISKEGVQTDPSKIQAIQNFGKPNCVKKLRSFLGICNYYRRFISDYAKKARMLEQLCSGPSNKKLEWSEGTNSVFEGLKLALTTAPILCFPDLKKEFILDTDASFDTIGAVLSQRDKDGKERVIAYGSHSMTSHEKGYCITRKELLAVYYFCIHFKHYLYGRRFTLRTDHKAI---TFMMTTKKPITSQFQTWINYLSSLDIRVEYRKGINHQNADMVSRTKCDTCVQCQMAHEEAKKGKIKTRLLDSIREEGRSN------------------IQHGIVEEV-------------------------------RKKTMIPENELQETIKEIHRLLCHAGVEKIADYMKDRYVGKHLWSKIQEIVRSCEICQKTKALTITTKEPVKRQDSKEMFEIIFVDICGPLAETKGRKKYILGIIDQYSKYQVLTAITKQDEETIKKTILEKWILRFGCPKEIRVD 3257 ++ + R + +NG + + L D+GA I+VMS C+ +L G + D ++R + + E G K+ +E I+ K+ PD IGG++ + F +L ++ IE+S +K + D +RL L LK++++SKL +I+ N+FMA K+D+G I+NL G++RKC S WNTPL+ V K + R+CLDFR LN+VTE+ +FPMP++ +LD LG S SSIDL YYQVEL E SQ KTAFSTK GQ+CFNR+PFG++ AP TFQ++M ++L + K +VYLDDIL Y+ ++E H +L EV I ++GL+++P KC K + F+ H +S++G+QT+ K I N + +LRSFLG+ NYYRRFI +Y+ A L +G ++K + W+E AVLSQ +DG E VIAY S +T+HE GYC+ RKELL +Y +HF+ YL + + + I + T KP S KG H N+D +SR C CQ+ +++K+GK +TR ++S+ G SN I H I E + ++P++ ++ + + + G++K +K + + I E + C+IC K KE + + + E I VDI ETK KKY++ IID++SK L+A QDE TI IL WI RFG P+ I D Sbjct: 36 MFKKDDDRKWSMMEINGFHLEMLWDSGASISVMSEKCW-RLIGSPILM-DSRIRLSGVFSKEYEKPFGSVKIVAKRNKKVREFNVIIVRKIHPDFIGGVDTMKIFCMKLKEVNIIESSLVNKRF------------TDSDRLKNTLLTLKLDKNSKLGTLISQFSNIFMASKFDLGH---------------------------------IKNLLVAGVVRKCQSSWNTPLVIVGKPDGSS-RMCLDFRCLNSVTEKVSFPMPDMQLLLDCLGKSKILSSIDLRQVYYQVELNENSQIKTAFSTKEGQFCFNRLPFGLSTAPATFQKLMHQILEGLVFKRVVVYLDDILKYAENQETHDKLLFEVFTRIIDSGLKVSPAKCAFNKSLLNFINHTVSEKGIQTNKGKFSEIVNPIETKSTTELRSFLGLTNYYRRFIKNYSMIAAPLYAATTG-NDKMIVWTEEC--------------------------------------AVLSQIKEDGTEGVIAYVSRHLTNHEMGYCVIRKELLVLYELIVHFRQYL--DKICSQNGSQGIEIYEYNKETNKPTISDI-----------------KGEEHGNSDGISRLNNTICSHCQIEQKDSKEGKCRTRYINSL--HGSSNIMKIIKQKQNEDRVTSEIISHFIGNEAHISYETISSSIFKYLKILQIQDDVLMINSDGKLAVVVPDSYVKSLVNYFYIEQGYLGIKKTLFCLKGFFFWPSMNQIITECINKCKICASRKIDQGRRKEILFPRTGERFLEQIIVDI--AYMETKESKKYMIVIIDRFSKLISLSAAITQDEATILNVILNNWIYRFGRPESILTD 778 The following BLAST results are available for this feature:
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Transposon Ty3-I Gag-Pol polyprotein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023331 ID=SMED30023331|Name=Transposon Ty3-I Gag-Pol polyprotein|organism=Schmidtea mediterranea sexual|type=transcript|length=6213bpback to top protein sequence of SMED30023331-orf-1 >SMED30023331-orf-1 ID=SMED30023331-orf-1|Name=SMED30023331-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=239bp VEDLVDRLFENKEFTKEKLTARMLIVCAENKEVEKEVILRKIKSTEEIKEback to top protein sequence of SMED30023331-orf-2 >SMED30023331-orf-2 ID=SMED30023331-orf-2|Name=SMED30023331-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1019bp MGYPQGAEKWENVGRVSEKVYRFLKREMFEEEVERIGTIETEQVVEILYNback to top protein sequence of SMED30023331-orf-3 >SMED30023331-orf-3 ID=SMED30023331-orf-3|Name=SMED30023331-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=105bp MFYRMNLLIIMKTNRQYSDEYISFGFAWTDEKECPIPKCVVCGVELSNSAback to top protein sequence of SMED30023331-orf-4 >SMED30023331-orf-4 ID=SMED30023331-orf-4|Name=SMED30023331-orf-4|organism=Schmidtea mediterranea sexual|type=polypeptide|length=377bp MSHDIEEIVNYKLSKKYFALQIDESVDISSKAQLLALVRFIDENEIVNQFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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