Negative elongation factor A
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023296 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Homology
BLAST of Negative elongation factor A vs. TrEMBL
Match: A0A5K4F0C1 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.111e-26 Identity = 107/381 (28.08%), Postives = 168/381 (44.09%), Query Frame = 2 Query: 89 LIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIK----NRKRKLEVDDKFVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDD-------------------------KDNNIKKEFQLIKETAQIRK-----ENEMNAKLEDIKKRLQQKSTTG-KKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKA 1126 +R F N WT+ D + N+++++ I+ F + VKSKL +L+A N+ ++ + +E+IFL+A+ E N LV+A+ATIL K LNYL FDIS + E F + KL + W+ ++AEY+ NV+ +++ K A + R+ KLE S +K YL+K++ EC ++R+ VPIPGR+ + ++ET+D +++ + L A I K EN + + I R + G KK S + L +ELP GPKAKQ +RK +ERE K M L+Q K+E+A Sbjct: 7 FVRQQFFDNNWTKSIDPDSLNEEKLECIDASFSHMDVKSKLCLLLAFSNMKQSKVQQINKHIENIFLQALDEENNLVKAVATILHSKQTLNYLNFDISPTNEAFGKNIDKLLKSATNWNTVDTPLLAEYLGRNVLDKLLSLKGSDKPPASLSKCGFQRRGKLE--------------------------SEHLKESYLEKLKDECQRRRVHVPIPGRSFAR---QDETEDSVAVEVSDSTSFSRRKSTFPRISGQSSDDLDSKRSLTWARANINKTGSNSENRPISTNDRISSR--SPAMAGVKKHSGIKLLEFDELPAFGPKAKQ-----------------------------LRKEKERETK-----MKLKQEKEERA 322 HSP 2 Score: 72.7886 bits (177), Expect = 2.297e-9 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 1895 QLETMKILIRYANRLSRPQKAMIVSYIAGSADGV-DFNGQ-SSVHISSH--RAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYR 2140 QL T++ L + ANR++RP+KAMI+S+IAGS D GQ + + +S H R +N +T Q +++ VD F MDY TG++ VK YR Sbjct: 948 QLSTVQSLFQDANRVTRPEKAMIISFIAGSRDNPRPETGQITRIRLSEHRERVLNQNTGQLMDLAVDTFLTMDYSTGKYEKVKCYR 1033
BLAST of Negative elongation factor A vs. TrEMBL
Match: G4VIS4 (Amidohydro-rel domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_024780.2 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 3.957e-26 Identity = 106/380 (27.89%), Postives = 167/380 (43.95%), Query Frame = 2 Query: 89 LIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIK----NRKRKLEVDDKFVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDD-------------------------KDNNIKKEFQLIKETAQIRK-----ENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKA 1126 +R F N WT+ D + N+++++ I+ F + VKSKL +L+A N+ ++ + +E+IFL+A+ E N LV+A+ATIL K LNYL FDIS + E F + KL + W+ ++AEY+ NV+ +++ K A + R+ KLE S +K YL+K++ EC ++R+ VPIPGR+ + ++ET+D +++ + L A I K EN + + I R + KK S + L +ELP GPKAKQ +RK +ERE K M L+Q K+E+A Sbjct: 7 FVRQQFFDNNWTKSIDPDSLNEEKLECIDASFSHMDVKSKLCLLLAFSNMKQSKVQQINKHIENIFLQALDEENNLVKAVATILHSKQTLNYLNFDISPTNEAFGKNIDKLLKSATNWNTVDTPLLAEYLGRNVLDKLLSLKGSDKPPASLSKCGFQRRGKLE--------------------------SEHLKESYLEKLKDECQRRRVHVPIPGRSFAR---QDETEDSVAVEVSDSTSFSRRKSTFPRISGQSSDDLDSKRSLTWARANINKTGSNSENRPISTNDRISSRSPAMAGV-KKHSGIKLLEFDELPAFGPKAKQ-----------------------------LRKEKERETK-----MKLKQEKEERA 322 HSP 2 Score: 71.2478 bits (173), Expect = 8.145e-9 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 1895 QLETMKILIRYANRLSRPQKAMIVSYIAGSADGV-DFNGQ-SSVHISSH--RAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYR 2140 QL T++ L + ANR++RP+KAMI+S+IAGS D GQ + + +S H R +N +T Q +++ VD F MDY TG++ VK YR Sbjct: 941 QLSTVQSLFQDANRVTRPEKAMIISFIAGSRDNPRPETGQITRIRLSEHRERVLNQNTGQLMDLAVDTFLTMDYSTGKYEKVKCYR 1026
BLAST of Negative elongation factor A vs. TrEMBL
Match: A0A430QK62 (Negative elongation factor A OS=Schistosoma bovis OX=6184 GN=DC041_0000963 PE=4 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.415e-25 Identity = 108/392 (27.55%), Postives = 168/392 (42.86%), Query Frame = 2 Query: 89 LIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKNRKRKLEVDDKFVNIN----EEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDD-------------------------------------KDNNIKKEFQLIKETAQIRK-----ENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKA 1126 +R F N WT+ D + N+++++ I+ F + VKSKL +L+A N+ + + +E+IFL+A+ E N LV+A+ATIL K LNYL FDIS + E F + KL + W+ ++AEY+ NV+ DKF+N+ S P G + + +S +K YL+K++ EC ++R+ VPIPGR+ + ++ET+D +++ + LI A I K EN + + I R + KK S + L +ELP GPKAKQ +RK +ERE K M L+Q K+E+A Sbjct: 7 FVRQQFFDNNWTKSIDPDSLNEEKLECIDASFSHMDVKSKLCLLLAFSNMKQSTVQQINKHIENIFLQALDEENNLVKAVATILHSKQTLNYLNFDISPTNEAFGKNIDKLLKSATNWNTVDTPLLAEYLGRNVL--------------------------DKFLNLKGNDKPPASLPKCGFQRRGKLESEHLKESYLEKLKDECQRRRVHVPIPGRSFAR---QDETEDSVAVEVVSNAGNSVTSSQSDSTSFSRRKSTFPRISGQSSDDLDSKRSLIWTRANINKTGNNSENRPISTNDRISSRSPAMAGV-KKHSGIKLLEFDELPAFGPKAKQ-----------------------------LRKEKERETK-----MKLKQEKEERA 334 HSP 2 Score: 70.8626 bits (172), Expect = 1.153e-8 Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 1895 QLETMKILIRYANRLSRPQKAMIVSYIAGSADGV-DFNGQ-SSVHISSH--RAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYR 2140 QL T++ L + ANR++RP+KAMI+S+IAGS D GQ + + +S H R +N +T Q +++ VD F MDY TG++ +K YR Sbjct: 960 QLSTVQSLFQDANRVTRPEKAMIISFIAGSRDNPRPETGQITRIRLSEHRERVLNQNTGQLMDLAVDTFLTMDYSTGKYEKIKCYR 1045
BLAST of Negative elongation factor A vs. TrEMBL
Match: A0A094ZGZ9 (Negative elongation factor A OS=Schistosoma haematobium OX=6185 GN=MS3_00243 PE=4 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.110e-25 Identity = 108/392 (27.55%), Postives = 168/392 (42.86%), Query Frame = 2 Query: 89 LIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKNRKRKLEVDDKFVNIN----EEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDD-------------------------------------KDNNIKKEFQLIKETAQIRK-----ENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKA 1126 +R F N WT+ D + N+++++ I+ F + VKSKL +L+A N+ + + +E+IFL+A+ E N LV+A+ATIL K LNYL FDIS + E F + KL + W+ ++AEY+ NV+ DKF+N+ S P G + + +S +K YL+K++ EC ++R+ VPIPGR+ + ++ET+D +++ + LI A I K EN + + I R + KK S + L +ELP GPKAKQ +RK +ERE K M L+Q K+E+A Sbjct: 7 FVRQQFFDNNWTKSIDPDSLNEEKLECIDASFSHMDVKSKLCLLLAFSNVKQSTVQQINKHIENIFLQALDEENNLVKAVATILHSKQTLNYLNFDISPTNEAFGKNIDKLLKSATNWNTVDTPLLAEYLGRNVL--------------------------DKFLNLKGNDKPPASLPKCGFQRRGKLESEHLKESYLEKLKDECQRRRVHVPIPGRSFAR---QDETEDSVAVEVVSNAGNSVTSSQSDSTSFSRRKSTFPRISGQSSDDLDSKRSLIWTRANINKTGNNSENRPISTNDRISSRSPAMAGV-KKHSGIKLLEFDELPAFGPKAKQ-----------------------------LRKEKERETK-----MKLKQEKEERA 334 HSP 2 Score: 70.4774 bits (171), Expect = 1.657e-8 Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 1895 QLETMKILIRYANRLSRPQKAMIVSYIAGSADGV-DFNGQ-SSVHISSH--RAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYR 2140 QL T++ L + ANR++RP+KAMI+S+IAGS D GQ + + +S H R +N +T Q +++ VD F MDY TG++ +K YR Sbjct: 960 QLSTVQSLFQDANRVTRPEKAMIISFIAGSRDNPRPETGQITRIRLSEHRERVLNQNTGQLVDLAVDTFLTMDYSTGKYEKIKCYR 1045
BLAST of Negative elongation factor A vs. TrEMBL
Match: A0A5J4NC23 (Negative elongation factor A (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0002803 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 3.885e-25 Identity = 110/425 (25.88%), Postives = 193/425 (45.41%), Query Frame = 2 Query: 89 LIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKNRKRKLEVDDKFVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDN---------------------------------------NIKKEFQLIKETAQIRKENEMNAKL--EDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEK-AEMEMQFNANIIDSNGGLPITDTVVDEENYLSMPGSYS 1237 IR HF N WT+ D ++++ I+ F ++ VKSKL +L++ +L + + +E+IFL+A+ E N LV+A+ATIL K LNYL FDIS + E F + +L + +W V ++AE++ E V+ ++ + +K S R+ V V +N P+ C+ K P+S +K YL++++ EC ++R+ VPIPGR+ + +E ++ D ++ N+ + + A + NE+ + E + R + +K S + L +ELP GPKAKQ+ + E+ E ++ K QERE++ Q+ E SK+ + AE + + + + P + + S+PG+ S Sbjct: 7 FIRQHFFDNQWTREVDPTTLSEEKWVSIDSAFCNIDVKSKLCLLLSFCHLKPSLPPEINKHIENIFLQALDEENNLVKAVATILHSKQSLNYLNFDISPTNEAFRKNIQRLLKSSADWRVVGTPLLAEFLGEGVLA-LVSNGPLTKHSVPSTKRQCASSVSGP-VKVN-----PSFRCRGK--PQSASLKESYLERLKDECQRRRVHVPIPGRSFARSEEADDDHDLESSGFLGSQMTIPRRSLTPGQNKKGGVAPSSWSQSSDNSGRNLVGSWSRSNQDAVPERSNEVRSAFVSEKLAARFPAAANF-RKSSGIKLLDFDELPAFGPKAKQLRK-------------------EQMEKEREVKRQEREDRLKEQKAAREASKRARQAERQALVSRSHAPVSSHWPALPSTGSDMPITSIPGAIS 402
BLAST of Negative elongation factor A vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000497.1 (pep scaffold:Pmarinus_7.0:GL485460:152936:167370:1 gene:ENSPMAG00000000435.1 transcript:ENSPMAT00000000497.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 51.9878 bits (123), Expect = 3.438e-7 Identity = 25/86 (29.07%), Postives = 49/86 (56.98%), Query Frame = 2 Query: 1895 QLETMKILIRYANRLSRPQKAMIVSYIAGSAD--GVDFNGQSSVHISSHRAI--NLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYR 2140 Q+ + + + AN+++RP+KA+I+ ++AGS + D + +S H + D ++VD F M+Y TG+W+ +K+Y+ Sbjct: 380 QMYAAQEMFKTANKVTRPEKALILGFMAGSRENPCPDQGDIIQIKLSEHTEVLPKADGTGSTTMLVDTVFEMNYATGQWTRLKKYK 465
BLAST of Negative elongation factor A vs. Planmine SMEST
Match: SMESG000066654.1 (SMESG000066654.1) HSP 1 Score: 1252.27 bits (3239), Expect = 0.000e+0 Identity = 716/721 (99.31%), Postives = 719/721 (99.72%), Query Frame = 2 Query: 56 MTTSNLSIVDSLIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKNRKRKLEVDDKFVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLSMPGSYSRPPGSAXXXXXXXXXXXXXXXXXXXXFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRXXXXXXXXXXXXXXXXXXXXXXXXXXNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVXXXXXXXXXXXXXXXXXXXXATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA 2218 MTTSNLSIVDSLIRSHFGSNLWTQI+DINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIK+RKRKLEVDDK VNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILREKEKEAKKVEKEEKLKKVKEEKEADKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLS+PGSYSRPPGSAPQSIQQAPSLLPPPPTATTQFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRPPQPPPQQ QSQQPQIVLIQSPSQIQNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVNNISQPPPLQQQPQINQQLPATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA Sbjct: 1 MTTSNLSIVDSLIRSHFGSNLWTQITDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKSRKRKLEVDDKIVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILREKEKEAKKVEKEEKLKKVKEEKEADKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLSVPGSYSRPPGSAPQSIQQAPSLLPPPPTATTQFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRPPQPPPQQSQSQQPQIVLIQSPSQIQNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVNNISQPPPLQQQPQINQQLPATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA 721
BLAST of Negative elongation factor A vs. Planmine SMEST
Match: SMESG000066659.1 (SMESG000066659.1) HSP 1 Score: 1189.1 bits (3075), Expect = 0.000e+0 Identity = 697/725 (96.14%), Postives = 701/725 (96.69%), Query Frame = 2 Query: 44 RLIFMTTSNLSIVDSLIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKNRKRKLEVDDKFVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESKVICLSIEELPPTGPKAKQILRXXXXXXXXXXXXXXXXXXXXXXXXDKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLSMPGSYSRPPGSAXXXXXXXXXXXXXXXXXXXXFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRXXXXXXXXXXXXXXXXXXXXXXXXXXNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVXXXXXXXXXXXXXXXXXXXXATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA 2218 +LIFMTTSNLSIVDSLIRSHFGSNLWTQI+DINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIK+RKRKLEVDDK VNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESK KEKEAKKVEKEEKLKKVKEEKEADKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLS+PGSYSRPPGSAPQSIQQAPSLLPPPPTATTQFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRPPQPPPQQ QSQQPQIVLIQSPSQIQNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVNNISQPPPLQQQPQINQQLPATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA Sbjct: 64 KLIFMTTSNLSIVDSLIRSHFGSNLWTQITDINFFNDDRIKQINQCFKDLPVKSKLYILMALGNLNNNQFLKWKNEVESIFLRAMVEGNLLVRAIATILQQKFGLNYLTFDISLSLENFADILIKLTSNMEEWDVCCECIVAEYISENVVTEMMKHIEGSKSSAKIKSRKRKLEVDDKIVNINEEKSQPNIGCKLKYLPKSYQIKNQYLQKIEAECNKKRISVPIPGRNKIKPKEENETDDKDNNIKKEFQLIKETAQIRKENEMNAKLEDIKKRLQQKSTTGKKESKR---------------------KEKEAKKVEKEEKLKKVKEEKEADKIRKLQERENKRIAQQMMLEQSKKEKAEMEMQFNANIIDSNGGLPITDTVVDEENYLSVPGSYSRPPGSAPQSIQQAPSLLPPPPTATTQFVNQLPAQIRLVQSDQTGYRIIDKPSANIRFIPNQNMSQSVFRPPQPPPQQSQSQQPQIVLIQSPSQIQNTNFSASSANQISQQPSYILSTNQAGVKLVRLVSNTNQNISQPSQQRLVRIIGSTSQSNNKNPACSSTPTINISRNFSQSQISPVSVNNISQPPPLQQQPQINQQLPATHINNSQQIHVNPQSMQLETMKILIRYANRLSRPQKAMIVSYIAGSADGVDFNGQSSVHISSHRAINLDTFQPLNVIVDAFFLMDYRTGRWSIVKQYREPRNEEDICSFDLQPSGYPPEFSMQA 767 The following BLAST results are available for this feature:
BLAST of Negative elongation factor A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Negative elongation factor A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Negative elongation factor A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Negative elongation factor A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Negative elongation factor A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Negative elongation factor A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Negative elongation factor A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023296 ID=SMED30023296|Name=Negative elongation factor A|organism=Schmidtea mediterranea sexual|type=transcript|length=2263bpback to top protein sequence of SMED30023296-orf-1 >SMED30023296-orf-1 ID=SMED30023296-orf-1|Name=SMED30023296-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=722bp MTTSNLSIVDSLIRSHFGSNLWTQISDINFFNDDRIKQINQCFKDLPVKSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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