SMED30023281
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023281 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Alignments
SMED30023281 aligns in the following genomic locations:
Homology
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]) HSP 1 Score: 106.686 bits (265), Expect = 1.026e-29 Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1 Query: 186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R + Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789]) HSP 1 Score: 106.301 bits (264), Expect = 1.823e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789]) HSP 1 Score: 106.301 bits (264), Expect = 1.823e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789]) HSP 1 Score: 106.301 bits (264), Expect = 2.077e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789]) HSP 1 Score: 106.301 bits (264), Expect = 2.077e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-6 (Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409]) HSP 1 Score: 102.064 bits (253), Expect = 1.213e-27 Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = -1 Query: 207 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 425 + KVYVG LP DA +E+E+ F FG I+ VWVAR P GFAFV +DD RDAEDAV+ LDGS ICGVR RVE+S Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
BLAST of SMED30023281 vs. Ensembl Celegans
Match: Y57G11A.5 (pep chromosome:WBcel235:IV:14511884:14512505:-1 gene:WBGene00013293.1 transcript:Y57G11A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11A.5) HSP 1 Score: 82.4185 bits (202), Expect = 8.215e-21 Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1 Query: 210 KNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 437 +N + +VYVG++P DA EKEIE F GPIKS+W+A+ P GFAFV F A DAVK L+G IC + +VEM Sbjct: 12 RNVENRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 87
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15 Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1 Query: 207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419 KVYVG+LP D EKE+E F +G IK V + R PA FAFV F+D+RDAEDAV+ DG G R+RVE + Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15 Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1 Query: 207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419 KVYVG+LP D EKE+E F +G IK V + R PA FAFV F+D+RDAEDAV+ DG G R+RVE + Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6]) HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15 Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1 Query: 207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419 KVYVG+LP D EKE+E F +G IK V + R PA FAFV F+D+RDAEDAV+ DG G R+RVE + Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082277) HSP 1 Score: 99.7525 bits (247), Expect = 5.131e-27 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1 Query: 210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419 KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+ CG R+RVEM Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEM 81
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082275) HSP 1 Score: 97.8265 bits (242), Expect = 2.265e-26 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1 Query: 210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419 KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+ CG R+RVEM Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEM 81
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0339838) HSP 1 Score: 96.6709 bits (239), Expect = 9.514e-26 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1 Query: 210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419 KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+ CG R+RVEM Sbjct: 12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0073790) HSP 1 Score: 96.6709 bits (239), Expect = 9.514e-26 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1 Query: 210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419 KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+ CG R+RVEM Sbjct: 12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0304001) HSP 1 Score: 97.0561 bits (240), Expect = 5.918e-25 Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1 Query: 210 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 422 KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+ CG R+RVEM Sbjct: 11 CKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 110.923 bits (276), Expect = 7.644e-31 Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = -1 Query: 165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 425 + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR + SR Sbjct: 13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSR 99
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 110.538 bits (275), Expect = 7.913e-31 Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = -1 Query: 165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 425 + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR + SR Sbjct: 13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSR 99
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 107.842 bits (268), Expect = 1.082e-30 Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR Sbjct: 13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSR 90
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7b (serine and arginine rich splicing factor 7b [Source:ZFIN;Acc:ZDB-GENE-050913-95]) HSP 1 Score: 109.383 bits (272), Expect = 2.207e-30 Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = -1 Query: 192 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 443 ++ E KVYVG+L A + E+E+AF +GP++SVW+ARNPAGFAFV F+D RDAED+V+ LDG VICG RVRVE+S G R Sbjct: 4 FGRHGGETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7b (serine and arginine rich splicing factor 7b [Source:ZFIN;Acc:ZDB-GENE-050913-95]) HSP 1 Score: 108.612 bits (270), Expect = 2.249e-30 Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = -1 Query: 192 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 443 ++ E KVYVG+L A + E+E+AF +GP++SVW+ARNPAGFAFV F+D RDAED+V+ LDG VICG RVRVE+S G R Sbjct: 4 FGRHGGETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247]) HSP 1 Score: 107.071 bits (266), Expect = 1.044e-29 Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1 Query: 186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R + Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247]) HSP 1 Score: 106.686 bits (265), Expect = 2.801e-29 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534]) HSP 1 Score: 107.457 bits (267), Expect = 5.317e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534]) HSP 1 Score: 107.457 bits (267), Expect = 7.312e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: ENSXETT00000035364.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:71113709:71115500:-1 gene:ENSXETG00000011190.1 transcript:ENSXETT00000035364.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 79.337 bits (194), Expect = 7.142e-19 Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = -1 Query: 207 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 434 ++D VY+G+L + N +E+AF +GP++ +WVA+ P GFAFV F+ DA AV+ L+G +CG ++RVE S Sbjct: 2 HRDNCNVYIGNLGQHVNRAVLEQAFGVYGPLRWIWVAQKPPGFAFVEFEKPHDAAAAVQGLNGKTLCGRQIRVEFS 77
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]) HSP 1 Score: 106.686 bits (265), Expect = 7.046e-30 Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1 Query: 186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R + Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]) HSP 1 Score: 106.301 bits (264), Expect = 1.252e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]) HSP 1 Score: 106.686 bits (265), Expect = 2.415e-29 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]) HSP 1 Score: 106.301 bits (264), Expect = 9.326e-29 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]) HSP 1 Score: 106.686 bits (265), Expect = 1.295e-28 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|P84104|SRSF3_MOUSE (Serine/arginine-rich splicing factor 3 OS=Mus musculus OX=10090 GN=Srsf3 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|P84103|SRSF3_HUMAN (Serine/arginine-rich splicing factor 3 OS=Homo sapiens OX=9606 GN=SRSF3 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q3SZR8|SRSF3_BOVIN (Serine/arginine-rich splicing factor 3 OS=Bos taurus OX=9913 GN=SRSF3 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28 Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q16629|SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 8.585e-28 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q3T106|SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.083e-27 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G R Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87
BLAST of SMED30023281 vs. TrEMBL
Match: A0A3S1C6J9 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_007889 PE=4 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.858e-39 Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = -1 Query: 162 YMSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRN 446 Y + ++ KVYVGDLPKDA+EKE+EKAF +G ++SVWVARNP GFAFV F+DYRDAED+VKELDG+ ICGVRVRVE+S G+ RPKPW SR Sbjct: 40 YGGRVPNDCKVYVGDLPKDASEKEVEKAFSYYGRLRSVWVARNPPGFAFVEFEDYRDAEDSVKELDGTTICGVRVRVELSSGKVRPKPWLRGSRG 134
BLAST of SMED30023281 vs. TrEMBL
Match: T1FXH9 (Uncharacterized protein OS=Helobdella robusta OX=6412 GN=20213527 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 7.354e-37 Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = -1 Query: 180 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPW 425 + K+YVGDLPKDA E E+E AF FGPIKS+WVARNPAGFAFV F+D RDAEDAVK LDGS ICG RVRVE S G+S+PKPW Sbjct: 9 DCKIYVGDLPKDATEDELESAFSTFGPIKSLWVARNPAGFAFVEFEDVRDAEDAVKTLDGSNICGGRVRVEFSTGKSKPKPW 90
BLAST of SMED30023281 vs. TrEMBL
Match: A0A564Z500 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS12459 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 9.194e-37 Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -1 Query: 138 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSND 443 MS+++ KVYVGDLP+DA+EKE+ + F +G +++VWVARNP GFAF+ FDD DAEDAV++LDG+VICGVR RVE+S+GR+RPKPW R + D Sbjct: 1 MSRSRSSTKVYVGDLPRDASEKELARVFDRYGTVRNVWVARNPPGFAFIEFDDPADAEDAVRDLDGTVICGVRARVELSNGRTRPKPWLRGDRGRESDRRGD 102
BLAST of SMED30023281 vs. TrEMBL
Match: A0A448X1Q8 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS19407 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.541e-36 Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = -1 Query: 132 MSKNKD-EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYN 443 MS+ D K+YVGDLP++A+E+EIE+AF+ +G +++VWVARNP GFAFV FDD DA DAV++LDG++ICGVR RVE+S G+SRPKPW R S S ++ Sbjct: 1 MSRRVDYSAKIYVGDLPREASEREIEQAFRSYGKLRNVWVARNPPGFAFVEFDDATDARDAVRDLDGTIICGVRARVELSTGKSRPKPWLRGGRGSSPRRSRPFD 105
BLAST of SMED30023281 vs. TrEMBL
Match: A0A0R3TNV0 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9087 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.818e-36 Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = -1 Query: 180 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPW 443 MS+++ KVYVGDLP+DA+EKE+ + F +G +++VWVARNP GFAF+ FDD DAEDAV++LDG+VICGVR RVE+S+GR+RPKPW Sbjct: 1 MSRSRSSTKVYVGDLPRDASEKELARVFDRYGTVRNVWVARNPPGFAFIEFDDPADAEDAVRDLDGTVICGVRARVELSNGRTRPKPW 88
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 110.538 bits (275), Expect = 3.603e-30 Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = -1 Query: 165 YMSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 446 Y S+++ + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG V+CG R+RVEMS+G +R + SR Sbjct: 3 YSSRSQADCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDSRDAEDAVKGMDG-VLCGNRIRVEMSNGMTRKSRFGRPSR 95
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410]) HSP 1 Score: 108.997 bits (271), Expect = 7.602e-30 Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1 Query: 192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440 S++ E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G R Sbjct: 5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410]) HSP 1 Score: 109.383 bits (272), Expect = 9.297e-30 Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1 Query: 192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440 S++ E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G R Sbjct: 5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410]) HSP 1 Score: 108.997 bits (271), Expect = 1.059e-29 Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1 Query: 192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440 S++ E KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G R Sbjct: 5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf3a (serine/arginine-rich splicing factor 3-like [Source:NCBI gene;Acc:103045376]) HSP 1 Score: 107.071 bits (266), Expect = 1.063e-29 Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVG+L ++ E+E+AF +GP++SVWVARNP GFAFV F+D+RDA DAV+ELDG +CG RVRVEMS G R Sbjct: 13 DCKVYVGNLGNSGDKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDHRDAADAVRELDGRTLCGCRVRVEMSSGEKR 90
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]) HSP 1 Score: 107.071 bits (266), Expect = 3.104e-30 Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = -1 Query: 147 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR---PKPWANQSRNSRYEN 425 + KVYVG+L + N+ E+E++F +GP++SVWVAR P GFAFV F+D RDA DAV+ELDG +CG RVRVE S GRSR P P N R RYE+ Sbjct: 14 DCKVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHSSGRSRNRGPPPAWN--RRPRYED 107
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 107.457 bits (267), Expect = 1.477e-29 Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = -1 Query: 150 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK-PWANQSRNSRYE 425 + KVYVG+L A E ++EK F +GP++SVWVARNP GFAFV F+D RDA D+ +ELDG ++CG RVRVEMS G R K W+ Q SR E Sbjct: 14 DCKVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARNPPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMSTGERRQKRGWSAQPPWSRCE 106
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 82.4185 bits (202), Expect = 2.524e-20 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = -1 Query: 192 VGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 410 VG+L A + E+ +AF +G +++VWVARNP AFV ++D RDAEDAV+ LDG ++CG RV VEMS+G R Sbjct: 1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVEMSNGVGR 73
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]) HSP 1 Score: 82.0333 bits (201), Expect = 2.804e-20 Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = -1 Query: 192 VGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 410 VG+L A + E+ +AF +G +++VWVARNP AFV ++D RDAEDAV+ LDG ++CG RV VEMS+G R Sbjct: 1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVEMSNGVGR 73
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 64.6994 bits (156), Expect = 2.361e-13 Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = -1 Query: 192 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 419 ++Y+G+L A +K+IE+ FK +G I + + GF FV FDD RDA DAV EL G +CG RV +E + G R Sbjct: 3 RIYLGNLSYRARDKDIERFFKGYGKIVEISIKH---GFGFVEFDDTRDANDAVCELSGRELCGERVVIEHARGPKR 75
BLAST of SMED30023281 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316]) HSP 1 Score: 46.595 bits (109), Expect = 4.380e-7 Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = -1 Query: 222 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA----RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRV 434 NK K+ V +LP +A K++ + F FG +KSV V ++ GFAFV F ++AE+A+ +L G + G R+ Sbjct: 759 NKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL 833
BLAST of SMED30023281 vs. Ensembl Yeast
Match: NPL3 (RNA-binding protein; promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; represses translation initiation by binding eIF4G; required for pre-mRNA splicing; interacts with E3 ubiquitin ligase Bre1p, linking histone ubiquitination to mRNA processing; may have role in telomere maintenance; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002840]) HSP 1 Score: 43.5134 bits (101), Expect = 4.889e-6 Identity = 22/69 (31.88%), Postives = 35/69 (50.72%), Query Frame = -1 Query: 216 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRV 422 +++V P D E E+ + F FGP+K V + GFAFV F++ A A++E+ G + V Sbjct: 125 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---GFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 190
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO31304 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA7]) HSP 1 Score: 107.071 bits (266), Expect = 4.983e-31 Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = -1 Query: 183 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 422 KVY+G L +A+++EIE F +GP+K VWVARNP GFAF +FDD RDAEDAV+ELDG ICG RVRVE++ G SR +P Sbjct: 2 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAKGPSRGRP 81
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO31305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA8]) HSP 1 Score: 106.301 bits (264), Expect = 3.474e-30 Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = -1 Query: 183 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 419 +VY+G++ +A+++EIE+ F+ FGP++ VWVARNP GFAF +F+D RDAEDAV+ELDG ICG R RVE++ G SR +P Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKGPSRGRP 81
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO30175 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I7]) HSP 1 Score: 93.5893 bits (231), Expect = 1.414e-25 Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = -1 Query: 204 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 422 K+YVG+L ++A+ E+E+AF+ FG + VWVARNP GFAFV ++DYRDAE+AV+ELDG+ +C +RVE S+ Sbjct: 3 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSN 75
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6]) HSP 1 Score: 90.8929 bits (224), Expect = 2.336e-24 Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = -1 Query: 204 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 422 KV+VG+L K+ + E+ +AFK +G ++ VWVARNP GFAFV F D RDA DAV LDG ICG RV+VE+SH Sbjct: 4 TKVWVGNLGKEGDRHELWEAFKSYGELRDVWVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVELSH 76
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO44646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI6]) HSP 1 Score: 70.8626 bits (172), Expect = 1.361e-15 Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 183 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAG--FAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 434 N ++ +VYVG+LP+D EK++ F +G I V + R AG FAFV F+D RDAEDAVK DG G R+RVE G S P P Sbjct: 5 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGPPP 91
BLAST of SMED30023281 vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533]) HSP 1 Score: 108.612 bits (270), Expect = 1.049e-29 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = -1 Query: 165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR------PKPWANQSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R P W+ + R Sbjct: 74 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGEKRSRSRGAPPSWSRRPR 166
BLAST of SMED30023281 vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533]) HSP 1 Score: 108.612 bits (270), Expect = 1.576e-29 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = -1 Query: 165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR------PKPWANQSR 425 + KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S+G R P W+ + R Sbjct: 74 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGEKRSRSRGAPPSWSRRPR 166
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211]) HSP 1 Score: 108.612 bits (270), Expect = 2.216e-29 Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG ++CG RVRVEMS G SR Sbjct: 15 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVEMSTGLSR 92
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211]) HSP 1 Score: 108.227 bits (269), Expect = 4.289e-29 Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = -1 Query: 192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425 + KVYVGDL A + E+E+AF +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG ++CG RVRVEMS G SR Sbjct: 15 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVEMSTGLSR 92
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]) HSP 1 Score: 105.145 bits (261), Expect = 7.628e-29 Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = -1 Query: 186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425 + KVYVG+L + N+ E+E+AF +GP+++VWVARNP GFAFV F+D RDA DAV+ELDG +CG RVRVE+S G R + Sbjct: 11 DCKVYVGNLGNNGNKTELERAFGYYGPLRTVWVARNPPGFAFVEFEDPRDASDAVRELDGRTMCGCRVRVELSTGEKRSR 90
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1) HSP 1 Score: 221.476 bits (563), Expect = 2.631e-75 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = -1 Query: 123 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK 443 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK Sbjct: 1 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK 107
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000045501.1 (SMESG000045501.1) HSP 1 Score: 71.633 bits (174), Expect = 5.216e-15 Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = -1 Query: 207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419 ++YVG+LP+ E++I+K F+++G I+SV + G+ FV DD RDAEDAV +LDGS + G RV VEM+ Sbjct: 3 RLYVGNLPRRIEERDIKKFFREYGRIRSVDIKN---GYGFVEIDDRRDAEDAVHDLDGSKLLGERVTVEMA 70
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1) HSP 1 Score: 67.3958 bits (163), Expect = 4.105e-14 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = -1 Query: 204 DEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 428 +E K+YVG+LP D+ ++IEK F FG I + + RN FAF+ FDD RDAEDA++E D + G +RVE Sbjct: 3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEFPR 78
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1) HSP 1 Score: 68.1662 bits (165), Expect = 4.726e-14 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = -1 Query: 210 DEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 428 +E K+YVG+LP D+ ++IEK F FG I + + RN FAF+ FDD RDAEDA++E D + G +RVE Sbjct: 3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEF 76
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1) HSP 1 Score: 63.5438 bits (153), Expect = 3.274e-12 Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = -1 Query: 186 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 419 ++++G L + +IE+ F+ FG + VWVAR+P GF+F++F DAE AV +++ G R++VE + S PK Sbjct: 10 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPK 87 The following BLAST results are available for this feature:
BLAST of SMED30023281 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30023281 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30023281 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30023281 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of SMED30023281 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30023281 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023281 ID=SMED30023281|Name=SMED30023281|organism=Schmidtea mediterranea sexual|type=transcript|length=500bpback to top protein sequence of SMED30023281-orf-1 >SMED30023281-orf-1 ID=SMED30023281-orf-1|Name=SMED30023281-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp MGSCFNTFNIKNYLNIFCYMSKNKDEVKVYVGDLPKDANEKEIEKAFKDFback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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