SMED30023281

Overview
NameSMED30023281
Smed IDSMED30023281
Length (bp)500
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30023281 (SMED30023281) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30023281 (SMED30023281) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30023281 (SMED30023281) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30023281 (SMED30023281) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30023281

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30023281SMESG000006493.1 SmedASXL_006714SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30023281SMESG000006493.1 SMESG000006492.1 SMESG000006491.1 dd_Smed_v4_2424_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30023281SMESG000006493.1 SMESG000006492.1 SMESG000006491.1 dd_Smed_v4_2424_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30023281SMESG000006493.1 SMESG000006492.1 SMESG000006491.1 dd_Smed_v4_2424_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30023281 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000119:154300..154873 +2389
Homology
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF3 (serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785])

HSP 1 Score: 106.686 bits (265), Expect = 1.026e-29
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R +
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88          
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 106.301 bits (264), Expect = 1.823e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 106.301 bits (264), Expect = 1.823e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 106.301 bits (264), Expect = 2.077e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Human
Match: SRSF7 (serine and arginine rich splicing factor 7 [Source:HGNC Symbol;Acc:HGNC:10789])

HSP 1 Score: 106.301 bits (264), Expect = 2.077e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-6 (Probable splicing factor, arginine/serine-rich 6 [Source:UniProtKB/Swiss-Prot;Acc:Q18409])

HSP 1 Score: 102.064 bits (253), Expect = 1.213e-27
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = -1
Query:  207 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 425
            + KVYVG LP DA  +E+E+ F  FG I+ VWVAR P GFAFV +DD RDAEDAV+ LDGS ICGVR RVE+S
Sbjct:    2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
BLAST of SMED30023281 vs. Ensembl Celegans
Match: Y57G11A.5 (pep chromosome:WBcel235:IV:14511884:14512505:-1 gene:WBGene00013293.1 transcript:Y57G11A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y57G11A.5)

HSP 1 Score: 82.4185 bits (202), Expect = 8.215e-21
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  210 KNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 437
            +N +  +VYVG++P DA EKEIE  F   GPIKS+W+A+ P GFAFV F     A DAVK L+G  IC +  +VEM
Sbjct:   12 RNVENRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 87          
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419
            KVYVG+LP D  EKE+E  F  +G IK V +   R PA FAFV F+D+RDAEDAV+  DG    G R+RVE +
Sbjct:   10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81          
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419
            KVYVG+LP D  EKE+E  F  +G IK V +   R PA FAFV F+D+RDAEDAV+  DG    G R+RVE +
Sbjct:   10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81          
BLAST of SMED30023281 vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 71.2478 bits (173), Expect = 2.704e-15
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419
            KVYVG+LP D  EKE+E  F  +G IK V +   R PA FAFV F+D+RDAEDAV+  DG    G R+RVE +
Sbjct:   10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFT 81          
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082277)

HSP 1 Score: 99.7525 bits (247), Expect = 5.131e-27
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419
            KVYVG+L   A++ EIE AF  +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+  CG R+RVEM
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEM 81          
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1 (gene:FBgn0260944 transcript:FBtr0082275)

HSP 1 Score: 97.8265 bits (242), Expect = 2.265e-26
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419
            KVYVG+L   A++ EIE AF  +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+  CG R+RVEM
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEM 81          
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0339838)

HSP 1 Score: 96.6709 bits (239), Expect = 9.514e-26
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419
            KVYVG+L   A++ EIE AF  +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+  CG R+RVEM
Sbjct:   12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81          
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0073790)

HSP 1 Score: 96.6709 bits (239), Expect = 9.514e-26
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  210 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 419
            KVYVG+L   A++ EIE AF  +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+  CG R+RVEM
Sbjct:   12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81          
BLAST of SMED30023281 vs. Ensembl Fly
Match: Rbp1-like (gene:FBgn0030479 transcript:FBtr0304001)

HSP 1 Score: 97.0561 bits (240), Expect = 5.918e-25
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = -1
Query:  210 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 422
             KVYVG+L   A++ EIE AF  +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+  CG R+RVEM
Sbjct:   11 CKVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRCCGTRIRVEM 81          
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 110.923 bits (276), Expect = 7.644e-31
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = -1
Query:  165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 425
            + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR   +   SR
Sbjct:   13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSR 99          
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 110.538 bits (275), Expect = 7.913e-31
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = -1
Query:  165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 425
            + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR   +   SR
Sbjct:   13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSR 99          
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 107.842 bits (268), Expect = 1.082e-30
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV ++D RDAEDAVK +DG V+CG RVRVE+S+G SR
Sbjct:   13 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSR 90          
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7b (serine and arginine rich splicing factor 7b [Source:ZFIN;Acc:ZDB-GENE-050913-95])

HSP 1 Score: 109.383 bits (272), Expect = 2.207e-30
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = -1
Query:  192 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 443
              ++  E KVYVG+L   A + E+E+AF  +GP++SVW+ARNPAGFAFV F+D RDAED+V+ LDG VICG RVRVE+S G  R
Sbjct:    4 FGRHGGETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Zebrafish
Match: srsf7b (serine and arginine rich splicing factor 7b [Source:ZFIN;Acc:ZDB-GENE-050913-95])

HSP 1 Score: 108.612 bits (270), Expect = 2.249e-30
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = -1
Query:  192 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 443
              ++  E KVYVG+L   A + E+E+AF  +GP++SVW+ARNPAGFAFV F+D RDAED+V+ LDG VICG RVRVE+S G  R
Sbjct:    4 FGRHGGETKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 107.071 bits (266), Expect = 1.044e-29
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R +
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88          
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: phex (phosphate regulating endopeptidase homolog X-linked [Source:Xenbase;Acc:XB-GENE-1012247])

HSP 1 Score: 106.686 bits (265), Expect = 2.801e-29
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86          
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534])

HSP 1 Score: 107.457 bits (267), Expect = 5.317e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: sms (spermine synthase [Source:Xenbase;Acc:XB-GENE-953534])

HSP 1 Score: 107.457 bits (267), Expect = 7.312e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 EAKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Xenopus
Match: ENSXETT00000035364.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:1:71113709:71115500:-1 gene:ENSXETG00000011190.1 transcript:ENSXETT00000035364.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 79.337 bits (194), Expect = 7.142e-19
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  207 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 434
            ++D   VY+G+L +  N   +E+AF  +GP++ +WVA+ P GFAFV F+   DA  AV+ L+G  +CG ++RVE S
Sbjct:    2 HRDNCNVYIGNLGQHVNRAVLEQAFGVYGPLRWIWVAQKPPGFAFVEFEKPHDAAAAVQGLNGKTLCGRQIRVEFS 77          
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 106.686 bits (265), Expect = 7.046e-30
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R +
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSR 88          
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 106.301 bits (264), Expect = 1.252e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf3 (serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285])

HSP 1 Score: 106.686 bits (265), Expect = 2.415e-29
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86          
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 106.301 bits (264), Expect = 9.326e-29
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Mouse
Match: Srsf7 (serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232])

HSP 1 Score: 106.686 bits (265), Expect = 1.295e-28
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|P84104|SRSF3_MOUSE (Serine/arginine-rich splicing factor 3 OS=Mus musculus OX=10090 GN=Srsf3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86          
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|P84103|SRSF3_HUMAN (Serine/arginine-rich splicing factor 3 OS=Homo sapiens OX=9606 GN=SRSF3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86          
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q3SZR8|SRSF3_BOVIN (Serine/arginine-rich splicing factor 3 OS=Bos taurus OX=9913 GN=SRSF3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.689e-28
Identity = 48/78 (61.54%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R
Sbjct:    9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR 86          
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q16629|SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.585e-28
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. UniProt/SwissProt
Match: sp|Q3T106|SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.083e-27
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG RVRVE+S G  R
Sbjct:   10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 87          
BLAST of SMED30023281 vs. TrEMBL
Match: A0A3S1C6J9 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_007889 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.858e-39
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  162 YMSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRN 446
            Y  +  ++ KVYVGDLPKDA+EKE+EKAF  +G ++SVWVARNP GFAFV F+DYRDAED+VKELDG+ ICGVRVRVE+S G+ RPKPW   SR 
Sbjct:   40 YGGRVPNDCKVYVGDLPKDASEKEVEKAFSYYGRLRSVWVARNPPGFAFVEFEDYRDAEDSVKELDGTTICGVRVRVELSSGKVRPKPWLRGSRG 134          
BLAST of SMED30023281 vs. TrEMBL
Match: T1FXH9 (Uncharacterized protein OS=Helobdella robusta OX=6412 GN=20213527 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.354e-37
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = -1
Query:  180 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPW 425
            + K+YVGDLPKDA E E+E AF  FGPIKS+WVARNPAGFAFV F+D RDAEDAVK LDGS ICG RVRVE S G+S+PKPW
Sbjct:    9 DCKIYVGDLPKDATEDELESAFSTFGPIKSLWVARNPAGFAFVEFEDVRDAEDAVKTLDGSNICGGRVRVEFSTGKSKPKPW 90          
BLAST of SMED30023281 vs. TrEMBL
Match: A0A564Z500 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS12459 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.194e-37
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -1
Query:  138 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSND 443
            MS+++   KVYVGDLP+DA+EKE+ + F  +G +++VWVARNP GFAF+ FDD  DAEDAV++LDG+VICGVR RVE+S+GR+RPKPW    R    +   D
Sbjct:    1 MSRSRSSTKVYVGDLPRDASEKELARVFDRYGTVRNVWVARNPPGFAFIEFDDPADAEDAVRDLDGTVICGVRARVELSNGRTRPKPWLRGDRGRESDRRGD 102          
BLAST of SMED30023281 vs. TrEMBL
Match: A0A448X1Q8 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS19407 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.541e-36
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = -1
Query:  132 MSKNKD-EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYN 443
            MS+  D   K+YVGDLP++A+E+EIE+AF+ +G +++VWVARNP GFAFV FDD  DA DAV++LDG++ICGVR RVE+S G+SRPKPW    R S    S  ++
Sbjct:    1 MSRRVDYSAKIYVGDLPREASEREIEQAFRSYGKLRNVWVARNPPGFAFVEFDDATDARDAVRDLDGTIICGVRARVELSTGKSRPKPWLRGGRGSSPRRSRPFD 105          
BLAST of SMED30023281 vs. TrEMBL
Match: A0A0R3TNV0 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9087 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.818e-36
Identity = 57/88 (64.77%), Postives = 75/88 (85.23%), Query Frame = -1
Query:  180 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPW 443
            MS+++   KVYVGDLP+DA+EKE+ + F  +G +++VWVARNP GFAF+ FDD  DAEDAV++LDG+VICGVR RVE+S+GR+RPKPW
Sbjct:    1 MSRSRSSTKVYVGDLPRDASEKELARVFDRYGTVRNVWVARNPPGFAFIEFDDPADAEDAVRDLDGTVICGVRARVELSNGRTRPKPW 88          
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 110.538 bits (275), Expect = 3.603e-30
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = -1
Query:  165 YMSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSR 446
            Y S+++ + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG V+CG R+RVEMS+G +R   +   SR
Sbjct:    3 YSSRSQADCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDSRDAEDAVKGMDG-VLCGNRIRVEMSNGMTRKSRFGRPSR 95          
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 108.997 bits (271), Expect = 7.602e-30
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1
Query:  192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440
            S++  E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G  R
Sbjct:    5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 109.383 bits (272), Expect = 9.297e-30
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1
Query:  192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440
            S++  E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G  R
Sbjct:    5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf7b (serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:103037410])

HSP 1 Score: 108.997 bits (271), Expect = 1.059e-29
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = -1
Query:  192 SKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 440
            S++  E KVYVG+L   A + E+E+AF  +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG VICG +VRVE+S G  R
Sbjct:    5 SRHAGETKVYVGNLGTGAGKGELERAFGYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGTQVRVELSTGMPR 87          
BLAST of SMED30023281 vs. Ensembl Cavefish
Match: srsf3a (serine/arginine-rich splicing factor 3-like [Source:NCBI gene;Acc:103045376])

HSP 1 Score: 107.071 bits (266), Expect = 1.063e-29
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVG+L    ++ E+E+AF  +GP++SVWVARNP GFAFV F+D+RDA DAV+ELDG  +CG RVRVEMS G  R
Sbjct:   13 DCKVYVGNLGNSGDKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDHRDAADAVRELDGRTLCGCRVRVEMSSGEKR 90          
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 107.071 bits (266), Expect = 3.104e-30
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = -1
Query:  147 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR---PKPWANQSRNSRYEN 425
            + KVYVG+L  + N+ E+E++F  +GP++SVWVAR P GFAFV F+D RDA DAV+ELDG  +CG RVRVE S GRSR   P P  N  R  RYE+
Sbjct:   14 DCKVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAPPGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHSSGRSRNRGPPPAWN--RRPRYED 107          
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006373.1 (pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-1 gene:ENSPMAG00000005755.1 transcript:ENSPMAT00000006373.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 107.457 bits (267), Expect = 1.477e-29
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  150 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK-PWANQSRNSRYE 425
            + KVYVG+L   A E ++EK F  +GP++SVWVARNP GFAFV F+D RDA D+ +ELDG ++CG RVRVEMS G  R K  W+ Q   SR E
Sbjct:   14 DCKVYVGNLGSGATEYDLEKVFSYYGPLRSVWVARNPPGFAFVQFEDARDARDSCRELDGRLVCGSRVRVEMSTGERRQKRGWSAQPPWSRCE 106          
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 82.4185 bits (202), Expect = 2.524e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  192 VGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 410
            VG+L   A + E+ +AF  +G +++VWVARNP   AFV ++D RDAEDAV+ LDG ++CG RV VEMS+G  R
Sbjct:    1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVEMSNGVGR 73          
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: srsf7a (serine and arginine rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798])

HSP 1 Score: 82.0333 bits (201), Expect = 2.804e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  192 VGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 410
            VG+L   A + E+ +AF  +G +++VWVARNP   AFV ++D RDAEDAV+ LDG ++CG RV VEMS+G  R
Sbjct:    1 VGNLGTRAAKGELWQAFGYYGALRNVWVARNPPAVAFVEYEDTRDAEDAVRGLDGRLLCGSRVSVEMSNGVGR 73          
BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 64.6994 bits (156), Expect = 2.361e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = -1
Query:  192 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 419
            ++Y+G+L   A +K+IE+ FK +G I  + +     GF FV FDD RDA DAV EL G  +CG RV +E + G  R
Sbjct:    3 RIYLGNLSYRARDKDIERFFKGYGKIVEISIKH---GFGFVEFDDTRDANDAVCELSGRELCGERVVIEHARGPKR 75          
BLAST of SMED30023281 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316])

HSP 1 Score: 46.595 bits (109), Expect = 4.380e-7
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = -1
Query:  222 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA----RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRV 434
            NK   K+ V +LP +A  K++ + F  FG +KSV V     ++  GFAFV F   ++AE+A+ +L G  + G R+
Sbjct:  759 NKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL 833          
BLAST of SMED30023281 vs. Ensembl Yeast
Match: NPL3 (RNA-binding protein; promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; represses translation initiation by binding eIF4G; required for pre-mRNA splicing; interacts with E3 ubiquitin ligase Bre1p, linking histone ubiquitination to mRNA processing; may have role in telomere maintenance; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002840])

HSP 1 Score: 43.5134 bits (101), Expect = 4.889e-6
Identity = 22/69 (31.88%), Postives = 35/69 (50.72%), Query Frame = -1
Query:  216 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRV 422
             +++V   P D  E E+ + F  FGP+K V +     GFAFV F++   A  A++E+ G       + V
Sbjct:  125 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---GFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 190          
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO31304 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA7])

HSP 1 Score: 107.071 bits (266), Expect = 4.983e-31
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = -1
Query:  183 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 422
             KVY+G L  +A+++EIE  F  +GP+K VWVARNP GFAF +FDD RDAEDAV+ELDG  ICG RVRVE++ G SR +P
Sbjct:    2 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAKGPSRGRP 81          
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO31305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SYA8])

HSP 1 Score: 106.301 bits (264), Expect = 3.474e-30
Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = -1
Query:  183 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 419
            +VY+G++  +A+++EIE+ F+ FGP++ VWVARNP GFAF +F+D RDAEDAV+ELDG  ICG R RVE++ G SR +P
Sbjct:    3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKGPSRGRP 81          
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO30175 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I7])

HSP 1 Score: 93.5893 bits (231), Expect = 1.414e-25
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  204 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 422
             K+YVG+L ++A+  E+E+AF+ FG +  VWVARNP GFAFV ++DYRDAE+AV+ELDG+ +C   +RVE S+
Sbjct:    3 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSN 75          
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO30178 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1I6])

HSP 1 Score: 90.8929 bits (224), Expect = 2.336e-24
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = -1
Query:  204 VKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 422
             KV+VG+L K+ +  E+ +AFK +G ++ VWVARNP GFAFV F D RDA DAV  LDG  ICG RV+VE+SH
Sbjct:    4 TKVWVGNLGKEGDRHELWEAFKSYGELRDVWVARNPPGFAFVEFYDARDARDAVDALDGERICGQRVKVELSH 76          
BLAST of SMED30023281 vs. Ensembl Nematostella
Match: EDO44646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI6])

HSP 1 Score: 70.8626 bits (172), Expect = 1.361e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  183 NKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAG--FAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKP 434
            N ++ +VYVG+LP+D  EK++   F  +G I  V +  R  AG  FAFV F+D RDAEDAVK  DG    G R+RVE   G S P P
Sbjct:    5 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGPPP 91          
BLAST of SMED30023281 vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 108.612 bits (270), Expect = 1.049e-29
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR------PKPWANQSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R      P  W+ + R
Sbjct:   74 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGEKRSRSRGAPPSWSRRPR 166          
BLAST of SMED30023281 vs. Ensembl Medaka
Match: SRSF3 (serine/arginine-rich splicing factor 3 [Source:NCBI gene;Acc:101168533])

HSP 1 Score: 108.612 bits (270), Expect = 1.576e-29
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = -1
Query:  165 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR------PKPWANQSR 425
            + KVYVG+L  + N+ E+E+AF  +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S+G  R      P  W+ + R
Sbjct:   74 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGEKRSRSRGAPPSWSRRPR 166          
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 108.612 bits (270), Expect = 2.216e-29
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG ++CG RVRVEMS G SR
Sbjct:   15 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVEMSTGLSR 92          
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf7a (serine/arginine-rich splicing factor 7 [Source:NCBI gene;Acc:101155211])

HSP 1 Score: 108.227 bits (269), Expect = 4.289e-29
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  192 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSR 425
            + KVYVGDL   A + E+E+AF  +GP++SVWVARNP GFAFV F+D RDAEDAVK +DG ++CG RVRVEMS G SR
Sbjct:   15 DCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVKGMDGKLLCGSRVRVEMSTGLSR 92          
BLAST of SMED30023281 vs. Ensembl Medaka
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 105.145 bits (261), Expect = 7.628e-29
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = -1
Query:  186 EVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 425
            + KVYVG+L  + N+ E+E+AF  +GP+++VWVARNP GFAFV F+D RDA DAV+ELDG  +CG RVRVE+S G  R +
Sbjct:   11 DCKVYVGNLGNNGNKTELERAFGYYGPLRTVWVARNPPGFAFVEFEDPRDASDAVRELDGRTMCGCRVRVELSTGEKRSR 90          
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000006493.1 (SMESG000006493.1)

HSP 1 Score: 221.476 bits (563), Expect = 2.631e-75
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = -1
Query:  123 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK 443
            MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK
Sbjct:    1 MSKNKDEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPKPWANQSRNSRYENSNDYNDKK 107          
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000045501.1 (SMESG000045501.1)

HSP 1 Score: 71.633 bits (174), Expect = 5.216e-15
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  207 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMS 419
            ++YVG+LP+   E++I+K F+++G I+SV +     G+ FV  DD RDAEDAV +LDGS + G RV VEM+
Sbjct:    3 RLYVGNLPRRIEERDIKKFFREYGRIRSVDIKN---GYGFVEIDDRRDAEDAVHDLDGSKLLGERVTVEMA 70          
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.105e-14
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  204 DEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSH 428
            +E K+YVG+LP D+  ++IEK F  FG I  + +  RN   FAF+ FDD RDAEDA++E D   + G  +RVE   
Sbjct:    3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEFPR 78          
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.726e-14
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  210 DEVKVYVGDLPKDANEKEIEKAFKDFGPIKSVWVA-RNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEM 428
            +E K+YVG+LP D+  ++IEK F  FG I  + +  RN   FAF+ FDD RDAEDA++E D   + G  +RVE 
Sbjct:    3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEF 76          
BLAST of SMED30023281 vs. Planmine SMEST
Match: SMESG000039881.1 (SMESG000039881.1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.274e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = -1
Query:  186 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHGRSRPK 419
            ++++G L     + +IE+ F+ FG +  VWVAR+P GF+F++F    DAE AV +++     G R++VE +   S PK
Sbjct:   10 RIFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVAKMNDRKFMGERIKVEHARNPSNPK 87          
The following BLAST results are available for this feature:
BLAST of SMED30023281 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SRSF31.026e-2960.00serine and arginine rich splicing factor 3 [Source... [more]
SRSF71.823e-2962.82serine and arginine rich splicing factor 7 [Source... [more]
SRSF71.823e-2962.82serine and arginine rich splicing factor 7 [Source... [more]
SRSF72.077e-2962.82serine and arginine rich splicing factor 7 [Source... [more]
SRSF72.077e-2962.82serine and arginine rich splicing factor 7 [Source... [more]
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BLAST of SMED30023281 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rsp-61.213e-2765.75Probable splicing factor, arginine/serine-rich 6 ... [more]
Y57G11A.58.215e-2152.63pep chromosome:WBcel235:IV:14511884:14512505:-1 ge... [more]
rsp-32.704e-1554.79Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-32.704e-1554.79Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-32.704e-1554.79Probable splicing factor, arginine/serine-rich 3 ... [more]
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BLAST of SMED30023281 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbp15.131e-2762.86gene:FBgn0260944 transcript:FBtr0082277[more]
Rbp12.265e-2662.86gene:FBgn0260944 transcript:FBtr0082275[more]
Rbp1-like9.514e-2662.86gene:FBgn0030479 transcript:FBtr0339838[more]
Rbp1-like9.514e-2662.86gene:FBgn0030479 transcript:FBtr0073790[more]
Rbp1-like5.918e-2561.97gene:FBgn0030479 transcript:FBtr0304001[more]
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BLAST of SMED30023281 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf7a7.644e-3159.77serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a7.913e-3159.77serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a1.082e-3064.10serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7b2.207e-3059.52serine and arginine rich splicing factor 7b [Sourc... [more]
srsf7b2.249e-3059.52serine and arginine rich splicing factor 7b [Sourc... [more]
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BLAST of SMED30023281 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
phex1.044e-2960.00phosphate regulating endopeptidase homolog X-linke... [more]
phex2.801e-2961.54phosphate regulating endopeptidase homolog X-linke... [more]
sms5.317e-2962.82spermine synthase [Source:Xenbase;Acc:XB-GENE-9535... [more]
sms7.312e-2962.82spermine synthase [Source:Xenbase;Acc:XB-GENE-9535... [more]
ENSXETT00000035364.17.142e-1943.42pep primary_assembly:Xenopus_tropicalis_v9.1:1:711... [more]
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BLAST of SMED30023281 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srsf37.046e-3060.00serine/arginine-rich splicing factor 3 [Source:MGI... [more]
Srsf71.252e-2962.82serine/arginine-rich splicing factor 7 [Source:MGI... [more]
Srsf32.415e-2961.54serine/arginine-rich splicing factor 3 [Source:MGI... [more]
Srsf79.326e-2962.82serine/arginine-rich splicing factor 7 [Source:MGI... [more]
Srsf71.295e-2862.82serine/arginine-rich splicing factor 7 [Source:MGI... [more]
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BLAST of SMED30023281 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P84104|SRSF3_MOUSE1.689e-2861.54Serine/arginine-rich splicing factor 3 OS=Mus musc... [more]
sp|P84103|SRSF3_HUMAN1.689e-2861.54Serine/arginine-rich splicing factor 3 OS=Homo sap... [more]
sp|Q3SZR8|SRSF3_BOVIN1.689e-2861.54Serine/arginine-rich splicing factor 3 OS=Bos taur... [more]
sp|Q16629|SRSF7_HUMAN8.585e-2862.82Serine/arginine-rich splicing factor 7 OS=Homo sap... [more]
sp|Q3T106|SRSF7_BOVIN1.083e-2762.82Serine/arginine-rich splicing factor 7 OS=Bos taur... [more]
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BLAST of SMED30023281 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3S1C6J97.858e-3968.42Uncharacterized protein (Fragment) OS=Elysia chlor... [more]
T1FXH97.354e-3775.61Uncharacterized protein OS=Helobdella robusta OX=6... [more]
A0A564Z5009.194e-3757.84Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A448X1Q83.541e-3657.14Uncharacterized protein OS=Protopolystoma xenopodi... [more]
A0A0R3TNV04.818e-3664.77Uncharacterized protein OS=Rodentolepis nana OX=10... [more]
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BLAST of SMED30023281 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf7a3.603e-3057.45serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7b7.602e-3059.04serine and arginine rich splicing factor 7 [Source... [more]
srsf7b9.297e-3059.04serine and arginine rich splicing factor 7 [Source... [more]
srsf7b1.059e-2959.04serine and arginine rich splicing factor 7 [Source... [more]
srsf3a1.063e-2961.54serine/arginine-rich splicing factor 3-like [Sourc... [more]
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BLAST of SMED30023281 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf3a3.104e-3057.29serine and arginine rich splicing factor 3a [Sourc... [more]
ENSPMAT00000006373.11.477e-2956.99pep scaffold:Pmarinus_7.0:GL478975:164155:166212:-... [more]
srsf7a2.524e-2053.42serine and arginine rich splicing factor 7a [Sourc... [more]
srsf7a2.804e-2053.42serine and arginine rich splicing factor 7a [Sourc... [more]
ENSPMAT00000010377.12.361e-1344.74pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene... [more]
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BLAST of SMED30023281 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
MRD14.380e-737.33Essential conserved small ribosomal subunit (40s) ... [more]
NPL34.889e-631.88RNA-binding protein; promotes elongation, regulate... [more]
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BLAST of SMED30023281 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO313044.983e-3162.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO313053.474e-3058.23Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301751.414e-2556.16Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO301782.336e-2458.90Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO446461.361e-1548.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of SMED30023281 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SRSF31.049e-2954.84serine/arginine-rich splicing factor 3 [Source:NCB... [more]
SRSF31.576e-2954.84serine/arginine-rich splicing factor 3 [Source:NCB... [more]
srsf7a2.216e-2965.38serine/arginine-rich splicing factor 7 [Source:NCB... [more]
srsf7a4.289e-2965.38serine/arginine-rich splicing factor 7 [Source:NCB... [more]
srsf3a7.628e-2958.75serine and arginine rich splicing factor 3a [Sourc... [more]
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BLAST of SMED30023281 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000006493.12.631e-75100.00SMESG000006493.1[more]
SMESG000045501.15.216e-1549.30SMESG000045501.1[more]
SMESG000013050.14.105e-1446.05SMESG000013050.1[more]
SMESG000013050.14.726e-1447.30SMESG000013050.1[more]
SMESG000039881.13.274e-1237.18SMESG000039881.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023281 ID=SMED30023281|Name=SMED30023281|organism=Schmidtea mediterranea sexual|type=transcript|length=500bp
TAAAGAAGCAGAATATTTATTATAAATACATATTTGTTAAATTTACATTG
TTAGTCTTTTATTATTTAACTTCCACGAGATATTGATCGACTTCTATGTC
TTCTATGTGATGAATTTCTGATTTTTTTATCATTGTAATCATTGGAATTT
TCATATCTGCTGTTCCTACTTTGATTAGCCCAAGGCTTTGGACGGGAACG
GCCATGACTCATTTCCACTCGTACACGAACTCCACATATTACTGATCCAT
CTAGCTCTTTCACTGCATCTTCGGCATCTCTATAATCATCAAACATTACA
AAAGCAAATCCTGCTGGGTTCCTAGCAACCCATACAGATTTAATTGGACC
AAAATCTTTAAAGGCTTTTTCAATTTCTTTTTCATTTGCATCTTTCGGTA
AATCTCCTACGTAAACTTTGACTTCATCTTTGTTTTTCGACATATAGCAG
AAGATATTTAAATAGTTTTTAATATTAAAAGTATTAAAACAACTCCCCAT
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protein sequence of SMED30023281-orf-1

>SMED30023281-orf-1 ID=SMED30023281-orf-1|Name=SMED30023281-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp
MGSCFNTFNIKNYLNIFCYMSKNKDEVKVYVGDLPKDANEKEIEKAFKDF
GPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSVICGVRVRVEMSHG
RSRPKPWANQSRNSRYENSNDYNDKKIRNSSHRRHRSRSISRGS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 25..93
e-value: 7.7E-23
score: 91.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 26..88
e-value: 2.9E-19
score: 68.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 24..97
score: 17.66
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 17..136
e-value: 3.1E-25
score: 90.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..141
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 23..138
NoneNo IPR availablePANTHERPTHR23147:SF18SERINE/ARGININE-RICH SPLICING FACTOR 7coord: 23..138
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 25..97
e-value: 8.7739E-41
score: 128.892
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 21..118