nuclear factor Y complex C

Overview


Name	nuclear factor Y complex C (AKG62118.1)
Smed ID	SMED30023249
Length (bp)	1363

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of nuclear factor Y complex C (SMED30023249) t-SNE clustered cells

Violin plots show distribution of expression levels for nuclear factor Y complex C (SMED30023249) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of nuclear factor Y complex C (SMED30023249) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for nuclear factor Y complex C (SMED30023249) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30023249

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
testis	SMED30023249	SMESG000077821.1	KU366703	smed_ncbi_20200123	PMID:27304889 Iyer et al., 2016
X2 cell	SMED30023249	SMESG000077821.1	SmedASXL_001049	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
nervous system	SMED30023249	SMESG000077821.1	dd_Smed_v4_5610_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Human
Match: NFYC (nuclear transcription factor Y subunit gamma [Source:HGNC Symbol;Acc:HGNC:7806])

HSP 1 Score: 149.443 bits (376), Expect = 7.167e-43
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPM 510
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K       R+  +  +P+
Sbjct:   19 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDELKPPKRQEVRQSVTPAEPV 141

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Human
Match: NFYC (nuclear transcription factor Y subunit gamma [Source:HGNC Symbol;Acc:HGNC:7806])

HSP 1 Score: 151.754 bits (382), Expect = 7.718e-42
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKP----PKRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Human
Match: NFYC (nuclear transcription factor Y subunit gamma [Source:HGNC Symbol;Acc:HGNC:7806])

HSP 1 Score: 152.91 bits (385), Expect = 8.317e-42
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Celegans
Match: nfyc-1 (Nuclear transcription factor Y subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A0K3AWV9])

HSP 1 Score: 105.145 bits (261), Expect = 3.740e-26
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1

Query:  130 NFWETAKLEISQIKTDQITFKSQDL--PLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVP 444
            +FW   K ++++I  + +  KS+++  P+AR+KKIM++D+DV+  MI+++API  A+AAEFFI E+T   W +    +RR LQ++DI  AV    +DQFDFLID +P
Sbjct:   49 DFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEARRRILQKADIASAV--QKSDQFDFLIDFLP 153

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Celegans
Match: nfyc-1 (Nuclear transcription factor Y subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A0K3AWV9])

HSP 1 Score: 105.916 bits (263), Expect = 4.708e-26
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1

Query:  130 NFWETAKLEISQIKTDQITFKSQDL--PLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVP 444
            +FW   K ++++I  + +  KS+++  P+AR+KKIM++D+DV+  MI+++API  A+AAEFFI E+T   W +    +RR LQ++DI  AV    +DQFDFLID +P
Sbjct:   84 DFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEARRRILQKADIASAV--QKSDQFDFLIDFLP 188

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Celegans
Match: nfyc-1 (Nuclear transcription factor Y subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A0K3AWV9])

HSP 1 Score: 105.916 bits (263), Expect = 4.708e-26
Identity = 48/107 (44.86%), Postives = 75/107 (70.09%), Query Frame = 1

Query:  130 NFWETAKLEISQIKTDQITFKSQDL--PLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVP 444
            +FW   K ++++I  + +  KS+++  P+AR+KKIM++D+DV+  MI+++API  A+AAEFFI E+T   W +    +RR LQ++DI  AV    +DQFDFLID +P
Sbjct:   84 DFWREKKQKMTEISEEDMLNKSKNMSVPMARVKKIMRIDDDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEARRRILQKADIASAV--QKSDQFDFLIDFLP 188

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Celegans
Match: pole-4 (pep chromosome:WBcel235:II:14968633:14969354:-1 gene:WBGene00013150.1 transcript:Y53F4B.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pole-4)

HSP 1 Score: 50.0618 bits (118), Expect = 4.653e-7
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLID 435
            LPL R+KK+++++ DV+  M++ EA  L AKAAE FI+E++  A  +    KR+T+Q  DI  A+    T  F FL D
Sbjct:   36 LPLGRVKKVVRMNPDVE--MLNNEALQLMAKAAELFIKELSNAANQNAALEKRKTVQTKDIDKAI--KKTWAFAFLED 109

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Fly
Match: Nf-YC (gene:FBgn0029905 transcript:FBtr0070974)

HSP 1 Score: 144.821 bits (364), Expect = 2.052e-37
Identity = 69/112 (61.61%), Postives = 86/112 (76.79%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIK 459
            ++NFW     E+  I   Q+  K Q LPLARIKKIMKLDE+ K  MI+ EAP+LFAKA E+FI+E+T+ AW+HTE ++RRTLQRSDI  A+A  + DQFDFLIDIVPR+EIK
Sbjct:  130 IDNFWPNIVSEVHSI--GQVDAKHQVLPLARIKKIMKLDENAK--MIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQAIA--NYDQFDFLIDIVPREEIK 235

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Fly
Match: Mes4 (gene:FBgn0034726 transcript:FBtr0071827)

HSP 1 Score: 59.6918 bits (143), Expect = 2.215e-10
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDT 411
            LPLARI+ IMKLD D+   M + EA  + AKA E FI  ++  ++ +T ++K++T+Q+ D+ +A++  D+
Sbjct:   78 LPLARIRNIMKLDPDLH--MANNEAVFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDS 145

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Fly
Match: Mes4 (gene:FBgn0034726 transcript:FBtr0301243)

HSP 1 Score: 59.6918 bits (143), Expect = 2.215e-10
Identity = 28/70 (40.00%), Postives = 48/70 (68.57%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDT 411
            LPLARI+ IMKLD D+   M + EA  + AKA E FI  ++  ++ +T ++K++T+Q+ D+ +A++  D+
Sbjct:   78 LPLARIRNIMKLDPDLH--MANNEAVFIVAKAVELFIASLSRESYTYTAQSKKKTIQKRDVDMAISAVDS 145

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Match: nfyc (nuclear transcription factor Y, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-2165])

HSP 1 Score: 154.836 bits (390), Expect = 1.455e-42
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +  D   F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVD---FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 127

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Match: nfyc (nuclear transcription factor Y, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-2165])

HSP 1 Score: 150.984 bits (380), Expect = 2.164e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Match: nfyc (nuclear transcription factor Y, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-2165])

HSP 1 Score: 151.754 bits (382), Expect = 2.288e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Match: nfyc (nuclear transcription factor Y, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-2165])

HSP 1 Score: 151.754 bits (382), Expect = 2.288e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Match: nfyc (nuclear transcription factor Y, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-2165])

HSP 1 Score: 151.754 bits (382), Expect = 2.288e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Match: inpp5j (inositol polyphosphate-5-phosphatase J [Source:Xenbase;Acc:XB-GENE-984978])

HSP 1 Score: 154.836 bits (390), Expect = 1.622e-42
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ QDLPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   18 LQSFWPRVMEEIRNLTVK--DFRVQDLPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 129

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Match: inpp5j (inositol polyphosphate-5-phosphatase J [Source:Xenbase;Acc:XB-GENE-984978])

HSP 1 Score: 154.836 bits (390), Expect = 1.991e-42
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ QDLPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   18 LQSFWPRVMEEIRNLTVK--DFRVQDLPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 129

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Match: inpp5j (inositol polyphosphate-5-phosphatase J [Source:Xenbase;Acc:XB-GENE-984978])

HSP 1 Score: 149.828 bits (377), Expect = 9.467e-41
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 1

Query:  187 FKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            F+ QDLPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   42 FRVQDLPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKP----PKRQE 134

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Match: pole4 (polymerase (DNA-directed), epsilon 4, accessory subunit [Source:NCBI gene;Acc:549359])

HSP 1 Score: 56.9954 bits (136), Expect = 1.195e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFL 429
            LPL+RIK +MK D D+   + S E+  + +KA E FI  I   A+++ ++ KR+TLQR D+  A+     D+F FL
Sbjct:   37 LPLSRIKALMKADPDLS--LASQESVFVISKATELFIETIAKDAYLYAQQGKRKTLQRKDLDNAI--DAIDEFAFL 108

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Match: pole4 (polymerase (DNA-directed), epsilon 4, accessory subunit [Source:NCBI gene;Acc:549359])

HSP 1 Score: 56.9954 bits (136), Expect = 1.429e-9
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDF----LIDIVPRD 450
            LPL+RIK +MK D D+   + S E+  + +KA E FI  I   A+++ ++ KR+TLQR D+ + +A+      +F    LI   P D
Sbjct:   37 LPLSRIKALMKADPDLS--LASQESVFVISKATELFIETIAKDAYLYAQQGKRKTLQRKDLGMYIAEDPFSLCEFCGHSLIAPPPDD 121

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Mouse
Match: Nfyc (nuclear transcription factor-Y gamma [Source:MGI Symbol;Acc:MGI:107901])

HSP 1 Score: 152.525 bits (384), Expect = 6.138e-42
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Mouse
Match: Nfyc (nuclear transcription factor-Y gamma [Source:MGI Symbol;Acc:MGI:107901])

HSP 1 Score: 63.5438 bits (153), Expect = 3.908e-12
Identity = 46/122 (37.70%), Postives = 55/122 (45.08%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK                                        R+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK----------------------------------------RNDIAMAIT--KFDQFDFLIDIVPRDELK----PPKRQE 92

[Close]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Match: sp|Q5E9X1|NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus OX=9913 GN=NFYC PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.832e-41
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Match: sp|Q5RA23|NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii OX=9601 GN=NFYC PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.120e-41
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Match: sp|Q62725|NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus OX=10116 GN=Nfyc PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.294e-41
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Match: sp|P70353|NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus OX=10090 GN=Nfyc PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 4.294e-41
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVK--DFRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELKPP----KRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Match: sp|Q13952|NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens OX=9606 GN=NFYC PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 1.522e-40
Identity = 78/122 (63.93%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRDE+K      KR+E
Sbjct:   19 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT--KFDQFDFLIDIVPRDELK----PPKRQE 130

[Close]

BLAST of nuclear factor Y complex C vs. TrEMBL
Match: A0A182BAE6 (Nuclear factor-Y subunit C OS=Schmidtea mediterranea OX=79327 GN=NF-YC PE=2 SV=1)

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 1

Query:   88 MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNXXXXXXXXXXXXXXXVLNGQQQSHIFAIGGNQTNQQTAXXXXXXXXXXXXXXXXXXXXXXXSLDPQQXXXXXXXXXXXXXXDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 1125
            MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI
Sbjct:    1 MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 346

[Close]

BLAST of nuclear factor Y complex C vs. TrEMBL
Match: A0A0F7GWV4 (Nuclear factor Y complex C (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 2.773e-148
Identity = 277/278 (99.64%), Postives = 277/278 (99.64%), Query Frame = 1

Query:  292 KAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNXXXXXXXXXXXXXXXVLNGQQQSHIFAIGGNQTNQQTAXXXXXXXXXXXXXXXXXXXXXXXSLDPQQXXXXXXXXXXXXXXDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 1125
            KAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTT GDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI
Sbjct:   11 KAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTXGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 288

[Close]

BLAST of nuclear factor Y complex C vs. TrEMBL
Match: A0A448XRZ0 (CBFD_NFYB_HMF domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS36933 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.649e-63
Identity = 126/253 (49.80%), Postives = 155/253 (61.26%), Query Frame = 1

Query:  100 ENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGN------LNLFGGNTIQLNT-QALSSGQLGLVDSNGLSVGANIIQAQGNQS---------------NVQNQSH--------GAVQYVLQLPIGSNNSLSGGQTIQIQMLPQ 768
            E +ES  +  +FWE AKLEI ++K D   FK+QDLPLARIKKIMKLD+DVK MMISAEAPILFAKAAE FIRE+TLRAW+HTERN+RRTLQR+D+ +AV+D DTDQFDFLIDIVPR+E + H     R  TS  Q +T V+ N            N   LNT Q L    + +  +NG+S  A+ I      S                  N  H        G +QYVLQLP  S  + + GQ+ Q+Q+LPQ
Sbjct:    6 EPSESHAQTASFWELAKLEIDEMKQDHNAFKTQDLPLARIKKIMKLDDDVKAMMISAEAPILFAKAAELFIRELTLRAWLHTERNRRRTLQRNDVAMAVSDSDTDQFDFLIDIVPREEARGH-----RRSTSTQQSVTTVSPNNSAAAATATIINNVPSLNTGQKLDYKTVTIPATNGVSATADGIVVSPTPSATAAAMQQSAAAVIGQANNPLHSAAGTIATGPIQYVLQLP-ASAAAAAPGQSFQLQVLPQ 252

[Close]

BLAST of nuclear factor Y complex C vs. TrEMBL
Match: A0A0R3WMJ4 (CBFD_NFYB_HMF domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS1969 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.063e-63
Identity = 119/240 (49.58%), Postives = 153/240 (63.75%), Query Frame = 1

Query:  103 NTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLF-------------GGNTIQLNTQALSSGQLGLVD-SNG----LSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQ 768
            + +S   + NFWE AK E   +K +Q +FK+QDLPLARIKKIMKLD+DVKTMMISAEAPILFAKAAE FIRE+TLRAW+HT+RN+RRTLQR+DI++AV+ GDTDQFDFLIDIVPRDE + H    +R +  H Q   Q     +L              GG+ + + T+        LV  ++G    ++ G   +Q     +     S   +QYV+QLP  + +S S GQ  QIQMLPQ
Sbjct:    8 SCDSQTHIANFWEMAKQEAEGLKPEQNSFKTQDLPLARIKKIMKLDDDVKTMMISAEAPILFAKAAELFIRELTLRAWLHTDRNRRRTLQRNDISMAVSYGDTDQFDFLIDIVPRDEGRGH----RRSQQQHTQSALQHMAGSSLVQQTQVQVVQQQQAGGDDVSIKTETAGPTTATLVAGADGTLTTVAAGQPTVQFATVPAAAATTSGQQIQYVIQLP--ATSSASNGQPFQIQMLPQ 241

[Close]

BLAST of nuclear factor Y complex C vs. TrEMBL
Match: A0A564YCS7 (CBFD_NFYB_HMF domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS5184 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.351e-62
Identity = 120/251 (47.81%), Postives = 154/251 (61.35%), Query Frame = 1

Query:   82 FKMDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNL------------FGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQ----------NQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQ 768
            F  D+  N+++   + +FWE AK E   +K +Q +FK+QDLPLARIKKIMKLD+DVK MMISAEAPILFAKAAE FIRE+TLRAW+HT+RN+RRTLQR+DI++AV+ GDTDQFDFLIDIVPR+E ++H    +R +  H Q   Q     +L             GG  + + ++A       LV     +    +    G Q  VQ          N S   +QYV+QLP  S  + S GQ  QIQMLPQ
Sbjct:    3 FATDL--NSDAAAHIADFWEKAKQEAECLKPEQNSFKTQDLPLARIKKIMKLDDDVKNMMISAEAPILFAKAAELFIRELTLRAWLHTDRNRRRTLQRNDISMAVSLGDTDQFDFLIDIVPREEGRAH----RRSQQQHTQSALQQMAGSSLVQQAQVHVVQQHAGGEDVSIKSEAAGQATATLV----ANADGTLTTVTGGQPTVQFTTVPTATATNVSGQQIQYVIQLP-ASAATASNGQPFQIQMLPQ 242

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Match: nfyc (nuclear transcription factor Y subunit gamma [Source:NCBI gene;Acc:103023800])

HSP 1 Score: 151.369 bits (381), Expect = 2.355e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTVKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Match: nfyc (nuclear transcription factor Y subunit gamma [Source:NCBI gene;Acc:103023800])

HSP 1 Score: 114.39 bits (285), Expect = 2.857e-28
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1

Query:  232 KLDEDVK--TMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            ++ E+++  T+MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   23 RVMEEIRNLTVMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 104

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Match: pole4 (DNA polymerase epsilon 4, accessory subunit [Source:NCBI gene;Acc:103045108])

HSP 1 Score: 56.9954 bits (136), Expect = 4.367e-9
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDI----VPR 447
            LPL+RIK +MK D D+   + S E+  + AKA E F+  I   A ++ ++ KR+TLQR D+  A+     D+F FL  I    +PR
Sbjct:   64 LPLSRIKALMKADPDLS--LASQESVFIIAKATELFVEMIAKDALVYAQQGKRKTLQRKDLDNAIE--AIDEFAFLEGIFLQPIPR 145

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Match: pole4 (DNA polymerase epsilon 4, accessory subunit [Source:NCBI gene;Acc:103045108])

HSP 1 Score: 55.0694 bits (131), Expect = 5.962e-9
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFL 429
            LPL+RIK +MK D D+   + S E+  + AKA E F+  I   A ++ ++ KR+TLQR D+  A+     D+F FL
Sbjct:   64 LPLSRIKALMKADPDLS--LASQESVFIIAKATELFVEMIAKDALVYAQQGKRKTLQRKDLDNAIE--AIDEFAFL 135

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Match: chrac1 (chromatin accessibility complex subunit 1 [Source:NCBI gene;Acc:103031563])

HSP 1 Score: 50.0618 bits (118), Expect = 2.075e-7
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1

Query:  190 KSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPR 447
            K+  LP++R+K IMK   DV    I+ +A  L  KA E F++ + L ++ +    +  TL  SD  LA    +T+ F FL DI+P+
Sbjct:   17 KTISLPVSRVKLIMKSSPDVSC--INQDALFLTTKATELFVQHLALSSYNNGSGKETNTLSYSD--LANTAEETETFQFLTDILPK 98

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Sea Lamprey
Match: drap1 (DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400])

HSP 1 Score: 48.521 bits (114), Expect = 8.595e-7
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIV 441
             P ARIKKIM+ DE+V    ++A  P++ ++A E F+  +  +A   T+    +T+  S +   +      QFDFL D+V
Sbjct:   12 FPPARIKKIMQTDEEVGK--VAAAVPVIISRALELFLESLLTKACQVTQSRNAKTMTTSHLKQCIE--AEQQFDFLKDLV 87

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Yeast
Match: HAP5 (Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex [Source:SGD;Acc:S000005885])

HSP 1 Score: 122.094 bits (305), Expect = 1.536e-32
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 1

Query:  178 QITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPR 447
            Q  FKS  LP ARI+K+MK DEDVK  MISAEAPI+FAKA E FI E+T+RAW   ERNKRRTLQ++DI  A+    +D FDFLID+VPR
Sbjct:  152 QDDFKSHSLPFARIRKVMKTDEDVK--MISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQ--KSDMFDFLIDVVPR 237

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Nematostella
Match: EDO41226 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4W7])

HSP 1 Score: 50.447 bits (119), Expect = 3.449e-8
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIV 441
             P ARIKKIM+ DEDV    ++A  P++ +KA E F++ +  +A  +T+    +TL  + +   +      QFDFL D+V
Sbjct:   12 FPPARIKKIMQTDEDVGK--VAAAVPVIISKALEIFMQTLVEKACNYTQARNAKTLSTAHLKRCIT--SEQQFDFLKDLV 87

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Match: nfyc (nuclear transcription factor Y subunit gamma [Source:NCBI gene;Acc:101158212])

HSP 1 Score: 150.599 bits (379), Expect = 4.022e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTLKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Match: nfyc (nuclear transcription factor Y subunit gamma [Source:NCBI gene;Acc:101158212])

HSP 1 Score: 149.828 bits (377), Expect = 5.029e-41
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1

Query:  124 LNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            L +FW     EI  +      F+ Q+LPLARIKKIMKLDEDVK  MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   17 LQSFWPRVMEEIRNLTLKD--FRVQELPLARIKKIMKLDEDVK--MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 128

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Match: nfyc (nuclear transcription factor Y subunit gamma [Source:NCBI gene;Acc:101158212])

HSP 1 Score: 114.775 bits (286), Expect = 2.008e-28
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1

Query:  232 KLDEDVK--TMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREE 489
            ++ E+++  T+MISAEAP+LFAKAA+ FI E+TLRAWIHTE NKRRTLQR+DI +A+     DQFDFLIDIVPRD++K      KR+E
Sbjct:   23 RVMEEIRNLTLMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF--DQFDFLIDIVPRDDLKPP----KRQE 104

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Match: pole4 (DNA polymerase epsilon 4, accessory subunit [Source:NCBI gene;Acc:101162035])

HSP 1 Score: 58.9214 bits (141), Expect = 2.137e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFL 429
            LPLARIK +MK D DV   + S E+  + AKA E F+  I   A ++ ++ KR+TLQR D+  A+     D+F FL
Sbjct:   48 LPLARIKALMKTDPDVS--LASQESVFIIAKATELFVEMIAKDALVYAQQGKRKTLQRKDLDNAIE--AVDEFAFL 119

[Close]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Match: drap1 (DR1 associated protein 1 [Source:NCBI gene;Acc:101159386])

HSP 1 Score: 48.1358 bits (113), Expect = 3.962e-6
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 1

Query:  202 LPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIV 441
             P ARIKKIM+ DE++    ++A  P++ ++A E F+  +  +A   T+    +T+  S +   +      QFDFL D+V
Sbjct:   12 FPPARIKKIMQTDEEIGK--VAAAVPVIISRALELFLESLLTKACQVTQSRNAKTMTMSHLKQCIE--LEQQFDFLKDLV 87

[Close]

BLAST of nuclear factor Y complex C vs. Planmine SMEST
Match: SMESG000077821.1 (SMESG000077821.1)

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 1

Query:   88 MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNXXXXXXXXXXXXXXXVLNGQQQSHIFAIGGNQTNQQTAXXXXXXXXXXXXXXXXXXXXXXXSLDPQQXXXXXXXXXXXXXXDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 1125
            MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI
Sbjct:    1 MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 346

[Close]

BLAST of nuclear factor Y complex C vs. Planmine SMEST
Match: SMESG000077821.1 (SMESG000077821.1)

HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 1

Query:   94 MFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNXXXXXXXXXXXXXXXVLNGQQQSHIFAIGGNQTNQQTAXXXXXXXXXXXXXXXXXXXXXXXSLDPQQXXXXXXXXXXXXXXDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 1125
            MFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI
Sbjct:    1 MFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKLDEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDITLAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNLFGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAVQYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLNGQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQTSIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI 344

The following BLAST results are available for this feature:

BLAST of nuclear factor Y complex C vs. Ensembl Human
BLAST of nuclear factor Y complex C vs. Ensembl Celegans
BLAST of nuclear factor Y complex C vs. Ensembl Fly
BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
BLAST of nuclear factor Y complex C vs. Ensembl Mouse
BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
BLAST of nuclear factor Y complex C vs. TrEMBL
BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
BLAST of nuclear factor Y complex C vs. Ensembl Sea Lamprey
BLAST of nuclear factor Y complex C vs. Ensembl Yeast
BLAST of nuclear factor Y complex C vs. Ensembl Nematostella
BLAST of nuclear factor Y complex C vs. Ensembl Medaka
BLAST of nuclear factor Y complex C vs. Planmine SMEST

BLAST of nuclear factor Y complex C vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
NFYC	7.167e-43	59.69	nuclear transcription factor Y subunit gamma [Sour...	[more]
NFYC	7.718e-42	63.93	nuclear transcription factor Y subunit gamma [Sour...	[more]
NFYC	8.317e-42	63.93	nuclear transcription factor Y subunit gamma [Sour...	[more]
NFYC	8.317e-42	63.93	nuclear transcription factor Y subunit gamma [Sour...	[more]
NFYC	8.317e-42	63.93	nuclear transcription factor Y subunit gamma [Sour...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
nfyc-1	3.740e-26	44.86	Nuclear transcription factor Y subunit gamma [Sou...	[more]
nfyc-1	4.708e-26	44.86	Nuclear transcription factor Y subunit gamma [Sou...	[more]
nfyc-1	4.708e-26	44.86	Nuclear transcription factor Y subunit gamma [Sou...	[more]
pole-4	4.653e-7	42.31	pep chromosome:WBcel235:II:14968633:14969354:-1 ge...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Nf-YC	2.052e-37	61.61	gene:FBgn0029905 transcript:FBtr0070974	[more]
Mes4	2.215e-10	40.00	gene:FBgn0034726 transcript:FBtr0071827	[more]
Mes4	2.215e-10	40.00	gene:FBgn0034726 transcript:FBtr0301243	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfyc	1.455e-42	63.93	nuclear transcription factor Y, gamma [Source:ZFIN...	[more]
nfyc	2.164e-41	63.11	nuclear transcription factor Y, gamma [Source:ZFIN...	[more]
nfyc	2.288e-41	63.11	nuclear transcription factor Y, gamma [Source:ZFIN...	[more]
nfyc	2.288e-41	63.11	nuclear transcription factor Y, gamma [Source:ZFIN...	[more]
nfyc	2.288e-41	63.11	nuclear transcription factor Y, gamma [Source:ZFIN...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
inpp5j	1.622e-42	64.75	inositol polyphosphate-5-phosphatase J [Source:Xen...	[more]
inpp5j	1.991e-42	64.75	inositol polyphosphate-5-phosphatase J [Source:Xen...	[more]
inpp5j	9.467e-41	73.27	inositol polyphosphate-5-phosphatase J [Source:Xen...	[more]
pole4	1.195e-9	40.79	polymerase (DNA-directed), epsilon 4, accessory su...	[more]
pole4	1.429e-9	36.78	polymerase (DNA-directed), epsilon 4, accessory su...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Nfyc	6.138e-42	63.93	nuclear transcription factor-Y gamma [Source:MGI S...	[more]
Nfyc	6.138e-42	63.93	nuclear transcription factor-Y gamma [Source:MGI S...	[more]
Nfyc	6.138e-42	63.93	nuclear transcription factor-Y gamma [Source:MGI S...	[more]
Nfyc	6.138e-42	63.93	nuclear transcription factor-Y gamma [Source:MGI S...	[more]
Nfyc	3.908e-12	37.70	nuclear transcription factor-Y gamma [Source:MGI S...	[more]

BLAST of nuclear factor Y complex C vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5E9X1\|NFYC_BOVIN	3.832e-41	63.93	Nuclear transcription factor Y subunit gamma OS=Bo...	[more]
sp\|Q5RA23\|NFYC_PONAB	4.120e-41	63.93	Nuclear transcription factor Y subunit gamma OS=Po...	[more]
sp\|Q62725\|NFYC_RAT	4.294e-41	63.93	Nuclear transcription factor Y subunit gamma OS=Ra...	[more]
sp\|P70353\|NFYC_MOUSE	4.294e-41	63.93	Nuclear transcription factor Y subunit gamma OS=Mu...	[more]
sp\|Q13952\|NFYC_HUMAN	1.522e-40	63.93	Nuclear transcription factor Y subunit gamma OS=Ho...	[more]

BLAST of nuclear factor Y complex C vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A182BAE6	0.000e+0	100.00	Nuclear factor-Y subunit C OS=Schmidtea mediterran...	[more]
A0A0F7GWV4	2.773e-148	99.64	Nuclear factor Y complex C (Fragment) OS=Schmidtea...	[more]
A0A448XRZ0	4.649e-63	49.80	CBFD_NFYB_HMF domain-containing protein OS=Protopo...	[more]
A0A0R3WMJ4	7.063e-63	49.58	CBFD_NFYB_HMF domain-containing protein OS=Hydatig...	[more]
A0A564YCS7	1.351e-62	47.81	CBFD_NFYB_HMF domain-containing protein OS=Hymenol...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfyc	2.355e-41	63.11	nuclear transcription factor Y subunit gamma [Sour...	[more]
nfyc	2.857e-28	62.50	nuclear transcription factor Y subunit gamma [Sour...	[more]
pole4	4.367e-9	39.53	DNA polymerase epsilon 4, accessory subunit [Sourc...	[more]
pole4	5.962e-9	40.79	DNA polymerase epsilon 4, accessory subunit [Sourc...	[more]
chrac1	2.075e-7	36.05	chromatin accessibility complex subunit 1 [Source:...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
drap1	8.595e-7	33.75	DR1-associated protein 1 (negative cofactor 2 alph...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
HAP5	1.536e-32	65.56	Subunit of the Hap2p/3p/4p/5p CCAAT-binding comple...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41226	3.449e-8	36.25	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of nuclear factor Y complex C vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nfyc	4.022e-41	63.11	nuclear transcription factor Y subunit gamma [Sour...	[more]
nfyc	5.029e-41	63.11	nuclear transcription factor Y subunit gamma [Sour...	[more]
nfyc	2.008e-28	62.50	nuclear transcription factor Y subunit gamma [Sour...	[more]
pole4	2.137e-10	43.42	DNA polymerase epsilon 4, accessory subunit [Sourc...	[more]
drap1	3.962e-6	32.50	DR1 associated protein 1 [Source:NCBI gene;Acc:101...	[more]

BLAST of nuclear factor Y complex C vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000077821.1	0.000e+0	100.00	SMESG000077821.1	[more]
SMESG000077821.1	0.000e+0	100.00	SMESG000077821.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Cross References

External references for this transcript


Database	Accession
SmedGD GBrowse	SMED30023249
GenBank	AKG62118.1

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30023249 ID=SMED30023249|Name=nuclear factor Y complex C|organism=Schmidtea mediterranea sexual|type=transcript|length=1363bp
AAATAAAAATAAAAAAAACCTATTATTATATTTTTTCTTGAAGTTTATCA
ATATTTTCCAGATTCCATATTGAATTTATGATTTAAGATGGATATGTTTG
AAAATACTGAATCGATTAATAAATTAAATAACTTCTGGGAAACTGCAAAA
TTAGAAATAAGTCAAATTAAGACAGATCAAATTACTTTTAAATCTCAAGA
TTTGCCTTTAGCGCGCATTAAGAAGATAATGAAATTGGACGAAGATGTTA
AAACTATGATGATTAGCGCTGAAGCGCCAATTTTATTTGCTAAAGCAGCA
GAATTTTTTATTCGTGAAATCACATTGAGAGCATGGATTCATACTGAACG
AAATAAACGGCGAACATTACAACGCAGTGACATAACGTTGGCTGTCGCTG
ATGGTGATACCGATCAATTTGATTTCTTAATTGATATTGTTCCAAGAGAT
GAAATCAAAAGTCATGGCTCTGCCACAAAACGAGAAGAAACATCTCATAA
TCAACCAATGACACAAGTCACTGGGAATTTAAACTTATTTGGAGGAAACA
CTATTCAGTTAAATACTCAAGCTTTATCGTCAGGGCAATTAGGATTAGTT
GATTCAAATGGTTTATCAGTTGGAGCTAATATAATTCAAGCTCAAGGCAA
TCAATCAAATGTTCAAAATCAATCTCATGGAGCTGTGCAGTATGTTTTAC
AATTACCGATTGGCTCTAACAATTCTTTGTCGGGTGGTCAAACAATTCAA
ATTCAAATGTTACCTCAGTCAATGATATCCAATTCCAGCGATAATCAAAC
CGCGACTACAATGACAACATCCAGCACCGTTTTGAATGGTCAACAACAAT
CTCATATATTTGCGATTGGTGGAAACCAGACCAATCAACAAACTGCAACT
GTGGTTTTACAACCCGGTCTGCTTACTGGAACCACTGGAACATCAATCTA
TTCGACCACTCCTTTATCATTAGATCCTCAACAAACCTCTATTGCTACTG
TTGCTACAACTGCGTCTGTAACTACTGATGGTGACCAGAATACCGGTGGC
AGTGGTGGCCACTTTGTTCTAACATCGATCAAAAGAGACACGGAGGAAAC
TGGATCACTAAATCAAGAACAAATATGAGACCCAATAAACTTTGTACAGC
ATTCATTGTAGATAAATAAATATGTAACAATCCCGTTATCATTTGATAGG
TGAATTCTCGCACAAGCTGTGTGTGTGTGCTCTCAACTCATTGGTTAATT
GAAAACGATCAATTGGTGGTTTTGCATTTACTATATATTATGTTAATTTA
TGTATTTACTGATTTTATTCAATGCATTTTATTATTAGTCTTGGTTTTTT
TTGGAAATTTATC

protein sequence of SMED30023249-orf-1

>SMED30023249-orf-1 ID=SMED30023249-orf-1|Name=SMED30023249-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=347bp
MDMFENTESINKLNNFWETAKLEISQIKTDQITFKSQDLPLARIKKIMKL
DEDVKTMMISAEAPILFAKAAEFFIREITLRAWIHTERNKRRTLQRSDIT
LAVADGDTDQFDFLIDIVPRDEIKSHGSATKREETSHNQPMTQVTGNLNL
FGGNTIQLNTQALSSGQLGLVDSNGLSVGANIIQAQGNQSNVQNQSHGAV
QYVLQLPIGSNNSLSGGQTIQIQMLPQSMISNSSDNQTATTMTTSSTVLN
GQQQSHIFAIGGNQTNQQTATVVLQPGLLTGTTGTSIYSTTPLSLDPQQT
SIATVATTASVTTDGDQNTGGSGGHFVLTSIKRDTEETGSLNQEQI*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron
PLANA:0000208	testis
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR027170	HAP5_su
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **molecular function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus
GO:0016602	CCAAT-binding factor complex

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 38..103 e-value: 1.3E-19 score: 70.2
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 2..120 e-value: 1.4E-37 score: 130.5
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 11..111
IPR027170	Transcriptional activator HAP5 subunit	PANTHER	PTHR10252:SF8	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA	coord: 11..276
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 11..276