60S acidic ribosomal protein P2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023159 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16
Homology
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Match: RPLP2 (ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]) HSP 1 Score: 63.5438 bits (153), Expect = 3.137e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Match: RPLP2 (ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]) HSP 1 Score: 63.5438 bits (153), Expect = 3.137e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Match: rla-2 (Ribosomal protein, Large subunit, Acidic (P1) [Source:UniProtKB/TrEMBL;Acc:Q9U1X9]) HSP 1 Score: 60.8474 bits (146), Expect = 1.066e-12 Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQG 243 MRY+S+Y+L+VLGGNA P+ +D+ IL+AVG++ D AK V + + V +LI++G Sbjct: 1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEG 58
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Match: rla-2 (Ribosomal protein, Large subunit, Acidic (P1) [Source:UniProtKB/TrEMBL;Acc:Q9U1X9]) HSP 1 Score: 60.8474 bits (146), Expect = 1.066e-12 Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQG 243 MRY+S+Y+L+VLGGNA P+ +D+ IL+AVG++ D AK V + + V +LI++G Sbjct: 1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEG 58
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Match: C37A2.7 (60S acidic ribosomal protein P2 [Source:UniProtKB/Swiss-Prot;Acc:O01504]) HSP 1 Score: 60.4622 bits (145), Expect = 1.325e-12 Identity = 25/62 (40.32%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 M+YL +Y+L+ LGGNA P A+D+ +L A G++CD+ A V A+ + ++++I+QG K+ Sbjct: 1 MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Fly
Match: RpLP2 (gene:FBgn0003274 transcript:FBtr0087105) HSP 1 Score: 55.0694 bits (131), Expect = 2.596e-10 Identity = 22/62 (35.48%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+VLGG P D+ IL++VG+E D + + ++ + + ++DLI +G +K+ Sbjct: 1 MRYVAAYLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2 (ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]) HSP 1 Score: 64.6994 bits (156), Expect = 8.139e-14 Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+VLGGN P A+DI IL +VGIE D + + V ++ +D+N++++ GL K+ Sbjct: 1 MRYVAAYLLAVLGGNTNPSAKDIKNILGSVGIEADDERLNKVVSELNGKDINEVMNAGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 53.9138 bits (128), Expect = 8.195e-10 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LGG P DI IL +VGIE D + + V ++ ++V ++I+QG K+ Sbjct: 1 MRYVAAYLLAALGGKDSPSTGDIKKILESVGIEADDVRMSKVVAELNGKNVEEVIAQGFSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 53.9138 bits (128), Expect = 8.195e-10 Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LGG P DI IL +VGIE D + + V ++ ++V ++I+QG K+ Sbjct: 1 MRYVAAYLLAALGGKDSPSTGDIKKILESVGIEADDVRMSKVVAELNGKNVEEVIAQGFSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Match: RPLP2 (uncharacterized loc100135138 [Source:NCBI gene;Acc:100135138]) HSP 1 Score: 61.2326 bits (147), Expect = 2.163e-12 Identity = 25/62 (40.32%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+VLGG P A DI +IL +VGI+ D + K+ + + +D+ D+++ GL K+ Sbjct: 1 MRYVAAYLLAVLGGKTSPSANDIKSILKSVGIDADDERVKKVISELSGKDLEDVVNSGLAKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Match: rplp2 (ribosomal protein lateral stalk subunit P2 [Source:NCBI gene;Acc:549399]) HSP 1 Score: 58.151 bits (139), Expect = 3.639e-11 Identity = 24/62 (38.71%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+VLGG P D++ IL++VGIE D +A++ V+ + + ++++I+QG K+ Sbjct: 1 MRYVAAYLLAVLGGTESPSIADLTKILSSVGIETDQQRAEKVVKELKGKSIDEVIAQGNTKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: AC124742.1 (ribosomal protein, large P2 (Rplp2), retrogene) HSP 1 Score: 63.5438 bits (153), Expect = 2.154e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILGSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 63.1586 bits (152), Expect = 2.555e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 63.1586 bits (152), Expect = 2.555e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Match: Rplp2 (ribosomal protein, large P2 [Source:MGI Symbol;Acc:MGI:1914436]) HSP 1 Score: 63.1586 bits (152), Expect = 2.555e-13 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P05387|RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens OX=9606 GN=RPLP2 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.506e-12 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P99027|RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus OX=10090 GN=Rplp2 PE=1 SV=3) HSP 1 Score: 63.1586 bits (152), Expect = 1.787e-12 Identity = 26/62 (41.94%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P42899|RLA2_BOVIN (60S acidic ribosomal protein P2 OS=Bos taurus OX=9913 GN=RPLP2 PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.680e-12 Identity = 26/62 (41.94%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN+ P A+DI IL +VGIE D ++ + + + +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELHGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|Q6X9Z5|RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus OX=9796 GN=RPLP2 PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.797e-12 Identity = 26/62 (41.94%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY++SY+L+ LGGN P A+DI IL +VGIE D ++ + + ++ +++ D+I+QG+ K+ Sbjct: 1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKL 62
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Match: sp|P50879|RLA2_TAESO (60S acidic ribosomal protein P2 OS=Taenia solium OX=6204 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.044e-12 Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRYL++Y+L+ LGG P+ DI IL++VG+EC+ +AK V + ++V DLI+ G +K+ Sbjct: 1 MRYLAAYLLAQLGGTGRPQESDIKNILSSVGVECEQERAKLGVDQLHGKNVRDLINTGKEKM 62
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A183I9B7 (Uncharacterized protein OS=Soboliphyme baturini OX=241478 GN=SBAD_LOCUS211 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 9.669e-14 Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQG 243 MRY+++Y+L+VLGG EP+ +DI IL AVG++CD +KAK+ +++ DVNDLI QG Sbjct: 16 MRYVAAYLLAVLGGKKEPQLDDIQKILAAVGVDCDDSKAKKVIESCKGHDVNDLIEQG 73
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A328HPX8 (Uncharacterized protein (Fragment) OS=Enterobacter hormaechei OX=158836 GN=DOZ52_29225 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.275e-13 Identity = 30/65 (46.15%), Postives = 49/65 (75.38%), Query Frame = 1 Query: 61 DLKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 DLKMRY+++Y+L+VLGGNA P A+DI IL +VGIE D + + + ++ +D+N++++ GL K+ Sbjct: 11 DLKMRYVAAYLLAVLGGNANPSAKDIKNILGSVGIEADDERLNKVISELNGKDINEVMNAGLSKL 75
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A132AE91 (60S acidic ribosomal protein P2-like protein OS=Sarcoptes scabiei OX=52283 GN=QR98_0077800 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-12 Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 61 DLKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGL 246 DLKMRY+++Y+L+VLGGN P +DI+ IL++VGIE D +K + + + + + DLISQGL Sbjct: 44 DLKMRYVAAYLLAVLGGNKSPSKDDINKILSSVGIESDEDKMSKVINELKGKSIEDLISQGL 105
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A4W4DYU7 (Ribosomal protein, large P2 OS=Electrophorus electricus OX=8005 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.920e-12 Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 61 DLKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 DLKMRY+++Y+LSVLGGN P A+DI IL +VGIE D + + + ++ +D+N++++ GL K+ Sbjct: 58 DLKMRYVAAYLLSVLGGNTSPSAKDIKNILGSVGIEADDQRLNKVISELNGKDINEVMNAGLSKL 122
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Match: A0A2D4BM79 (Ribosomal protein putative OS=Pythium insidiosum OX=114742 GN=PINS_002368 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.393e-12 Identity = 26/64 (40.62%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 64 LKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 + MRY+++Y+L++LGGNA P A D++ IL++VG+E D + + + ++ +DVN++I+ G KK+ Sbjct: 1 MPMRYIAAYLLAILGGNAAPSAADVTAILSSVGVEVDAERLNQVISELEGKDVNEIIAAGSKKL 64
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Match: rplp2 (60S acidic ribosomal protein P2-like [Source:NCBI gene;Acc:103029731]) HSP 1 Score: 62.3882 bits (150), Expect = 5.360e-13 Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+VLGGN P A+DI IL +VGIE + + V ++ +D+N++++ GL K+ Sbjct: 1 MRYVAAYLLAVLGGNTSPSAKDIKNILGSVGIEASDERLNKVVSELNGKDINEVMNAGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Match: rplp2l (ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]) HSP 1 Score: 49.2914 bits (116), Expect = 4.554e-8 Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQ 240 MRY+++Y+L+ L G P + DI IL +VGIE D + + V ++ + V D+I+Q Sbjct: 1 MRYVAAYLLAALSGKDNPSSNDIKKILESVGIEVDETRMGKVVSELNGKKVEDVIAQ 57
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Sea Lamprey
Match: rplp2 (ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]) HSP 1 Score: 60.4622 bits (145), Expect = 6.113e-13 Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 67 KMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 +MRY+++Y+L+ LGGN +P A DI IL +VGIE D +K + + + ++V ++IS G KI Sbjct: 2 RMRYVAAYLLATLGGNEQPTAIDIKKILGSVGIEADDSKLSKVISELKGKNVEEVISAGFTKI 64
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Yeast
Match: RPP2B (Ribosomal protein P2 beta; a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; free (non-ribosomal) P2 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm [Source:SGD;Acc:S000002790]) HSP 1 Score: 48.521 bits (114), Expect = 1.191e-8 Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCR-DVNDLISQGLKKI 255 M+YL++Y+L V GGNA P A DI ++ +VG E D + E + +++ + + ++I++G KK Sbjct: 1 MKYLAAYLLLVQGGNAAPSAADIKAVVESVGAEVDEARINELLSSLEGKGSLEEIIAEGQKKF 63
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Nematostella
Match: EDO47503 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RLY2]) HSP 1 Score: 53.9138 bits (128), Expect = 2.847e-10 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LG N P A+DI IL +VGIE D+ + + + + + V+++I G K+ Sbjct: 1 MRYVAAYLLATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: rplp2 (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101170669]) HSP 1 Score: 60.077 bits (144), Expect = 2.974e-12 Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LGGN P A+DI IL +VGIE D + + + ++ +++N++++ GL K+ Sbjct: 1 MRYVAAYLLAALGGNTSPSAKDIKDILGSVGIEADDERLNKVIGELNGKNINEVVNSGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: rplp2 (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101170669]) HSP 1 Score: 60.077 bits (144), Expect = 2.974e-12 Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LGGN P A+DI IL +VGIE D + + + ++ +++N++++ GL K+ Sbjct: 1 MRYVAAYLLAALGGNTSPSAKDIKDILGSVGIEADDERLNKVIGELNGKNINEVVNSGLSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 57.3806 bits (137), Expect = 5.072e-11 Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1 Query: 46 LSTNFDLKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 L + MRY+++Y+L+ LGGN PEA DI IL +VGIE D + + + + ++V ++I+ G K+ Sbjct: 10 LCPKIKITMRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 79
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 56.9954 bits (136), Expect = 5.238e-11 Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 MRY+++Y+L+ LGGN PEA DI IL +VGIE D + + + + ++V ++I+ G K+ Sbjct: 1 MRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 62
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Match: lin7c (60S acidic ribosomal protein P2 [Source:NCBI gene;Acc:101168608]) HSP 1 Score: 58.151 bits (139), Expect = 1.703e-10 Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 64 LKMRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKI 255 ++MRY+++Y+L+ LGGN PEA DI IL +VGIE D + + + + ++V ++I+ G K+ Sbjct: 171 VRMRYVAAYLLAALGGNGNPEAGDIKKILDSVGIEADSERLGKVLSELKGKNVEEVIAAGYSKL 234
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000009232.1 (SMESG000009232.1) HSP 1 Score: 135.961 bits (341), Expect = 4.659e-42 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 405 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKISSVPTGGAGAAPTAATSSAPAPAAKEEVKAAAKESSSESEEGDMGFGLFD Sbjct: 1 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKISSVPTGGAGAAPTAATSSAPAPAAKEEVKAAAKESSSESEEGDMGFGLFD 112
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000057890.1 (SMESG000057890.1) HSP 1 Score: 54.299 bits (129), Expect = 3.448e-10 Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 1 Query: 70 MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 405 MRY+++Y+L +L P+ DI IL++VG+ECD N E AI + ++ LIS G+ K+++VP GGA AP+AA +A A + +A A++ SS E DMGFGLFD Sbjct: 1 MRYIAAYMLCLLN-EKTPKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD 111
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Match: SMESG000057890.1 (SMESG000057890.1) HSP 1 Score: 43.5134 bits (101), Expect = 3.935e-6 Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 121 PEAEDISTILTAVGIECDINKAKEAVQAIDCRDVNDLISQGLKKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 405 P+ DI IL++VG+ECD N E AI + ++ LIS G+ K+++VP GGA AP+AA +A A + +A A++ SS E DMGFGLFD Sbjct: 10 PKPSDIENILSSVGVECDKNAVTELFNAIKEKSIDSLISAGISKLATVPAGGAAVAPSAAPLAAGAAQVTKVEEAKAEKESSSESEADMGFGLFD 104 The following BLAST results are available for this feature:
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of 60S acidic ribosomal protein P2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S acidic ribosomal protein P2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of 60S acidic ribosomal protein P2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023159 ID=SMED30023159|Name=60S acidic ribosomal protein P2|organism=Schmidtea mediterranea sexual|type=transcript|length=450bpback to top protein sequence of SMED30023159-orf-1 >SMED30023159-orf-1 ID=SMED30023159-orf-1|Name=SMED30023159-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=113bp MRYLSSYILSVLGGNAEPEAEDISTILTAVGIECDINKAKEAVQAIDCRDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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