DNA-directed RNA polymerase subunit

Overview
NameDNA-directed RNA polymerase subunit
Smed IDSMED30023097
Length (bp)5923
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of DNA-directed RNA polymerase subunit (SMED30023097) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit (SMED30023097) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA-directed RNA polymerase subunit (SMED30023097) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA-directed RNA polymerase subunit (SMED30023097) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30023097

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30023097h1SMcG0010290 SmedASXL_016848SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30023097h1SMcG0010290 SmedASXL_016848SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30023097h1SMcG0010290 SmedASXL_016847SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30023097h1SMcG0010290 SmedASXL_016847SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187])

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 1.043e-77
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187])

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 1.043e-77
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187])

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 303/529 (57.28%), Postives = 394/529 (74.48%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFL 1857
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 555          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR3A (RNA polymerase III subunit A [Source:HGNC Symbol;Acc:HGNC:30074])

HSP 1 Score: 563.918 bits (1452), Expect = 9.630e-172
Identity = 323/881 (36.66%), Postives = 512/881 (58.12%), Query Frame = 1
Query:  349 IYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCN----------------VICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            +Y +  Q   P   G++D R G  +K   C+TC  N+++C GH+G+I+L  P +++GY   +I IL+ +C  C  ++++  + K   + +K+   +Y ++  L   I ++C+K   C+                +I ++ +  +K ++ I+    NF+Q       ++++ E  +   G+ ++ L    V+ +FKRI  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N  FL++LV+NG  ++PGA F+ + +       +  +   +  +L YG+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF + A+   ++  +           +P PTI KP  LWTGKQ+FS+I+ P   N  R +      +  G  + +   D+ V I+N +L+ G + K TLGS S  ++ +I+  +   ++  +  + +  +   +L   G +IGI D        +     +N       + I   ++ +L   PG +  +T E  +   L+  RD  GS+  + L K NS   M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   41 LYSQDNQHA-PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVS---NFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913          

HSP 2 Score: 102.064 bits (253), Expect = 9.578e-21
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   +E  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+   TP +T +L      D + A+ +   +E T L +++   E  + PD
Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--DKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPD 1124          

HSP 3 Score: 94.7449 bits (234), Expect = 1.693e-18
Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++S+  +++ + +  +K +L++                +G  L  V+A   V    TTSN+  E+ +T GIEAAR  I  E+   +   G  ++ RH+ LL ++MT+KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1202 QGIPEVSRAVIHIDEQSGKEKYKLLV----------------EGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR1A (RNA polymerase I subunit A [Source:HGNC Symbol;Acc:HGNC:17264])

HSP 1 Score: 333.569 bits (854), Expect = 7.915e-92
Identity = 214/644 (33.23%), Postives = 318/644 (49.38%), Query Frame = 1
Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDR-----IDLKRR---------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSL----IIP---------GKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLYNA-------------------ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            LQ HV  + D+E   L +           ++Q L+ K G  R ++MGKR DY AR+VI  D  +N +++G+P   A  LT+P+ VTP+N + L+Q V NG  ++PGA  VI E+G R     +D+ +R         P +   +    +IV RH+ N D ++ NRQPTLH+ S+  HR ++LP     RL+ +    YNADFDGDEMN H PQS+   AE   LA  ++  + P+  +P+  ++QD + +   MT R  F      M L+     + G+  K        P+I KP  LWTGKQ+ S     IIP         GK                  +   S  +++V+I  G+L+ G+L K   GSS+  L+H        +  G     +  +   +L L+ G T+G+ D L                      A R  +      + D+V       H  + +      +   F+E+VN   NE                NS  +MV SGAKGS +N  Q+   +GQ  +EG+R P     ++LP F   +F P + GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+    ++Q  YGEDGLD
Sbjct:  394 LQSHVNIVFDSEMDKLMMD------KYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELV-----YRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGK-DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025          

HSP 2 Score: 86.6557 bits (213), Expect = 5.402e-16
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 3376 SLEALEWIIGEIRNI----FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA--AAKDVEIAKK 3663
            S E  E  +  +R +    + +S   PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ V S N KTP +++ +L    A K V+  KK
Sbjct: 1181 SYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKK 1283          

HSP 3 Score: 80.1073 bits (196), Expect = 4.275e-14
Identity = 51/168 (30.36%), Postives = 88/168 (52.38%), Query Frame = 3
Query: 4098 VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598
            +Y +K  T    R ++N   + +  +E +L T+G  LP++      +D     SN I  I  T+GIEAA   IE E+ +V +  G  V+ RHL+L+ + M  +G    ++R GI R  +  L + +FE +   L +A      D ++  S  +++G++ R GTG F++
Sbjct: 1553 IYATKGIT----RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715          

HSP 4 Score: 57.7658 bits (138), Expect = 2.970e-7
Identity = 29/68 (42.65%), Postives = 34/68 (50.00%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G P  NGL D   GP D   +C TC  + S C GH GHI L   VYN    +K+  +LR  C  C  L
Sbjct:   43 GNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: ama-1 (DNA-directed RNA polymerase II subunit RPB1 [Source:UniProtKB/Swiss-Prot;Acc:P16356])

HSP 1 Score: 1435.24 bits (3714), Expect = 0.000e+0
Identity = 685/1168 (58.65%), Postives = 885/1168 (75.77%), Query Frame = 1
Query:  352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTI----------IRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            +PE  ++GKPK  GLMDPRQG +D+   C TC+GN+++CPGHFGH+ LA+PV++IG+  K +KILR VCF C +LL++   P++ EI+KKT  + +KR  +I++ CK       +C+ + E E+G+             +  GC   QP +RR G+D + E K   + D  + K  L A +V+EVF++I++ED +++G + +++RPE MI TVL VPP+AVRPA+V   S K  DDLTHKL++I+K N ++++ E NG A+ ++ +    LQ+HVATL+DN    LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN   LQ+LV  G T YPGAK++IRENG R+DL+  P ++D+ L  G  VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E  AEI  +A V + +ITPQ+N+PVM IVQD+L A   MT RD F++   MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN  RTHSTHP+SEDSGPYKWIS  DT+V+IE+G+L+ GI+C KT+G S+G+L+H++ LE   +   NF+++IQTV+N WL+ EGHTIGI DT+ + AT  +I+  I KAK DV D I K H+++L  TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F  MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN  FER+FR D+ D   L ++ +E  V+EI+   D ++ +++EW QL+ DR  LR+        ++ LPCN+QRLIWNA+  FK+D+ K  ++ P  +++ VR L  +LI+V GND IS  A  N+TLL+  L+RS LC K +   ++L+ EA +W++GEI + F ++   PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+  KTPSLT+ L GAAAKD E AK +   LEHTTL+K+  ++ IYYDPDP+N+V+  D +WV  +YE PD D+ +
Sbjct:   38 FPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCK----AKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR 1200          

HSP 2 Score: 311.612 bits (797), Expect = 3.256e-85
Identity = 195/395 (49.37%), Postives = 250/395 (63.29%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXX--XXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG------ATPMNXXXXXXXXXXXXXXXXXXXXTGF---------GLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895
            +P     + S ++LRI L RK++ DKKL+++ IA++I   F ND+     D+N + LV R+R+  +D    +EE+ D+MED  +L  I+  +L ++ LQGIP ISKVY+++P TDDKKR+II  +G F+ V +WILETDGT L +VL+ER +D   TTSN I EIFE  GIEA R AIE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA  HAE DP+KGVSE+IMLGQLAR GTGCFD++     LD  +C   M  + QN+ M GG       +P N           S      +   +         G  FSP+G ++ G SP    G+SP         +SP+TP    YG  SPG+
Sbjct: 1193 MPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV-----LDVEKCKYGME-IPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS---YGGMSPGV 1578          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: ama-1 (DNA-directed RNA polymerase II subunit RPB1 [Source:UniProtKB/Swiss-Prot;Acc:P16356])

HSP 1 Score: 1435.24 bits (3714), Expect = 0.000e+0
Identity = 685/1168 (58.65%), Postives = 885/1168 (75.77%), Query Frame = 1
Query:  352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTI----------IRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            +PE  ++GKPK  GLMDPRQG +D+   C TC+GN+++CPGHFGH+ LA+PV++IG+  K +KILR VCF C +LL++   P++ EI+KKT  + +KR  +I++ CK       +C+ + E E+G+             +  GC   QP +RR G+D + E K   + D  + K  L A +V+EVF++I++ED +++G + +++RPE MI TVL VPP+AVRPA+V   S K  DDLTHKL++I+K N ++++ E NG A+ ++ +    LQ+HVATL+DN    LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN   LQ+LV  G T YPGAK++IRENG R+DL+  P ++D+ L  G  VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E  AEI  +A V + +ITPQ+N+PVM IVQD+L A   MT RD F++   MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN  RTHSTHP+SEDSGPYKWIS  DT+V+IE+G+L+ GI+C KT+G S+G+L+H++ LE   +   NF+++IQTV+N WL+ EGHTIGI DT+ + AT  +I+  I KAK DV D I K H+++L  TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F  MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN  FER+FR D+ D   L ++ +E  V+EI+   D ++ +++EW QL+ DR  LR+        ++ LPCN+QRLIWNA+  FK+D+ K  ++ P  +++ VR L  +LI+V GND IS  A  N+TLL+  L+RS LC K +   ++L+ EA +W++GEI + F ++   PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+  KTPSLT+ L GAAAKD E AK +   LEHTTL+K+  ++ IYYDPDP+N+V+  D +WV  +YE PD D+ +
Sbjct:   38 FPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCK----AKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR 1200          

HSP 2 Score: 311.612 bits (797), Expect = 3.256e-85
Identity = 195/395 (49.37%), Postives = 250/395 (63.29%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXX--XXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG------ATPMNXXXXXXXXXXXXXXXXXXXXTGF---------GLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895
            +P     + S ++LRI L RK++ DKKL+++ IA++I   F ND+     D+N + LV R+R+  +D    +EE+ D+MED  +L  I+  +L ++ LQGIP ISKVY+++P TDDKKR+II  +G F+ V +WILETDGT L +VL+ER +D   TTSN I EIFE  GIEA R AIE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA  HAE DP+KGVSE+IMLGQLAR GTGCFD++     LD  +C   M  + QN+ M GG       +P N           S      +   +         G  FSP+G ++ G SP    G+SP         +SP+TP    YG  SPG+
Sbjct: 1193 MPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV-----LDVEKCKYGME-IPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS---YGGMSPGV 1578          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpc-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q18566])

HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0
Identity = 409/1200 (34.08%), Postives = 633/1200 (52.75%), Query Frame = 1
Query:  286 FVSN*TDFFQRSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKI--REIMKKT-EGSYRKRF-DLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQP-KFRRNGLDYSMETKDSDDGKGKQ--------PLYAHQVVEVFKRISNEDC-IIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKR-RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV------MPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSG-SLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGL--------DGGFVEF-QVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEW-EQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVR 3777
            F     +F +++  V      +Y +     +P   G +DP+ G   K   C TC   +++C GHFG+ +L  PV++IG+ +  I++L+ +C  CS +L+     ++  R++M    +  +RK     I   CKK  TC+    ++   +K +  +++    F  P      G   +M + + + G   +        PL+   V ++F  I   D  ++M  + +   P  ++LT + VPP+ +RP++V    +G   DD+T KL EI+  N+ +++ + +G  S  + E    LQ   A  +++E + LP  +Q   R +++  QRLKGK GR R NL GKR D++ RTVI+ DPNL +DQVGVP  +A  LTFPE V   N + ++QLV NG+ ++PGA +++ ++ G++  LK  + D     L  G+ +ERH+ ++D V+FNRQP+LHK+S+M HR KV+P  TFR N     PYNADFDGDEMNLH+PQ+ EA AE + L  V   +ITP+S  P+++ +QD +T    +T +DTFL  AE+      L   +        +P P I +P  LWTGKQL  LII P K +    + T      +G  +  S  D+ V+I N  L+ G L K  LGSSS  ++ +++  +   D   +    +  +   +L   G +IGI D   +     E    ++         I +    +L + PG +  +T E  +   L+  RD  G    ++LSKYN+   M V G+KGS INISQ+IACVGQQ + G R P GF++R+LPHF +    PE++GFV NS+ +GLTPTEFFFH MGGREG++DTAVKTAETGY+QRRL+K +E +   YD TVR+ +  +I+  +GEDGL        DG  V+F  VL   K  N+   +     +D +D++ +   +K+    + +    AD  +E+  Q +I +    +  K   G                         +  D+K  +     +NL                A + S L   CL ++ LC    +C  +++                ++   PG  VG++AA S+GEP+TQMTL TFHFAGV++ N+T GVPR+KEIIN  +   TP +T  LL     D  +A+++ A +E TTL ++    E  Y PD    +V+ +   +R
Sbjct:   20 FAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIA--FASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLF---VQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK--NIQTTKEQPIPVDKLDEVLKAEIQKK---FKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNH-----------------------ETADLKTKESCKICKNL---------------EAYKTSLLANSCLTKTQLCSFIELCYYKVA----------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR 1151          

HSP 2 Score: 92.0485 bits (227), Expect = 4.141e-18
Identity = 57/179 (31.84%), Postives = 97/179 (54.19%), Query Frame = 3
Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNF 4610
            +GIP +++  +     D+KK       GDF     + L  +GT    VL+   VD   T  N+   + +  GIEAAR+ I  E+   +   G  ++ RH+ LL ++MT++G ++ I R+G+ + +   L  +SFE+T+D L EA   ++ D + GVSE I++G    +GTG F ++  +
Sbjct: 1217 KGIPSVNRCVIH---ADEKK-------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7])

HSP 1 Score: 340.887 bits (873), Expect = 1.760e-94
Identity = 233/727 (32.05%), Postives = 358/727 (49.24%), Query Frame = 1
Query:  931 ESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIR----------QAEENGVASTIILEKENSLQYHVA--TLMDNESTFLPVAIQKSGR-PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEI--------------VERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM--FLPSWNGV-MPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYK-----WI---------SHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIG-NFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNEL---------NSTPG---RSLLQTF------EEKVNMI---LNEARDKTGSSAQKS--------LSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            + + L  + VPP   RP I M    +  D  T  L ++++    I            A+   + +  +  K  + Q H A   L    +      + K  R  +  +KQ L+ K G  R ++MGKR ++  R+VIT DP L++D++G+P   A+ LTF E V  FN   ++ L+R G   +PGA F +  +G +  L  +P+    ++   +               V RHM N D ++ NRQP+LHK S++GHR +VL      R+N +    YNADFDGDEMN H+ QS  A  E+  +A V    + P+   P++ ++QD + +   +++RD FLN  + MHL++  F      + +P PTI  P+RLWTGKQ+ + I+    NC       P     G  K     WI           +++ V+   G+L++G+L K   G++   L H  A E      G    +    +   +L F G T+G+ D L        +K    K K+ V ++ T G  N++          +TP    R+L  T+         V M+   + +   K   +  KS        L   N+  LM+ SGAKGS +N  Q+  C+GQ  +EGKR+      RTLP F   D  P + G+++  +L G+ P E FFH M GREG+IDTAVKT+ +GY+QR ++K +E + V YD+TVR+    +IQ RYGEDG+D
Sbjct:  351 DGLFLERILVPPKKFRP-IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVK---NC--IPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAH-CAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILV-------VKDADGKRKEAVMESRTIG--NQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMD 1061          

HSP 2 Score: 87.0409 bits (214), Expect = 1.400e-16
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 3412 RNIFYK---SQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTIRLLGAAAKD 3645
            R +++K   S   PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+   S++  TPS +I ++   ++D
Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRD 1299          

HSP 3 Score: 80.8777 bits (198), Expect = 1.027e-14
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 3
Query: 4173 EEWILETDGTCLPKVLAERYV-DSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMN 4607
            E  IL+T G  L        V D  +  SN +  I E +G+EA   AI  EM NV +  G  V+ RHL+L  + MT  G +   +R G     +  L + +FE T+  L EA  H E D +   S  +++G L R GTG FD+L++
Sbjct: 1569 EMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLD 1713          

HSP 4 Score: 64.3142 bits (155), Expect = 1.042e-9
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G P   GL DP  GP + + MC TC+     CPGH GHI LA PV+N    +    +L+  C  C +L
Sbjct:   46 GHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 113          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7])

HSP 1 Score: 59.3066 bits (142), Expect = 4.459e-10
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3
Query: 4320 EMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMN 4607
            EM NV +  G  V+ RHL+L  + MT  G +   +R G     +  L + +FE T+  L EA  H E D +   S  +++G L R GTG FD+L++
Sbjct:    2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLD 96          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpII215 (gene:FBgn0003277 transcript:FBtr0073542)

HSP 1 Score: 1469.14 bits (3802), Expect = 0.000e+0
Identity = 700/1176 (59.52%), Postives = 894/1176 (76.02%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQ----------GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD 3804
            R +SV++  G+ + E  + G+PK  GLMDPRQG +D+ S CQTC+GN++ECPGHFGHI+LA+PV++IG+  K IKILR VCF CSK+LV+ H+PKI+EI+ K+ G  RKR   +++ CK       IC+  E+ +  L    +Q          GC   QP  RR GLD + E K  + D  + K  + A +V E+ K I++E+C I+G + KY+RP+ MI+TVL VPP+AVRPA+VM  + K  DDLTHKL++I+K NNE+R+ E +G A+ +I E    LQ+HVATL+DN+   +P A+QKSG+PLK++K RLKGK GR+R NLMGKR D++ARTVIT DPNL +DQVGVPR+IAQNLTFPE VTPFN   +Q+LVR G + YPGAK+++R+NG+RIDL+  P SSD+ L  G  VERH+ +DD V+FNRQPTLHKMSMMGHRVKVLP+STFR+NLS T PYNADFDGDEMNLH+PQS E  AE+ N+    + +ITPQ+N+PVM IVQD+LTA  KMT RD F+   ++M+LLMFLP+W+  MP+P I KP+ LWTGKQ+FSLIIPG VN  RTHSTHP+ ED GPYKWIS  DT+V++E+G+LIMGILCKK+LG+S+GSL+HI  LE   D  G F+ NIQTV+NNWLLFEGH+IGI DT+ +  T  EI+  I KAKDDV + I K H+ EL  TPG +L QTFE KVN ILN+ARDKTG SA+KSL++YN+   MVVSG+KGS INISQVIACVGQQNVEGKRIP+GF++RTLPHFIK D+GPESRGFVENSYLAGLTP+EF+FHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + QLIQLRYGEDGL G  VEFQ +PT K++N +FE+ F+FD  +   + +  T+  ++E+ + ++ + +++AEW++L  DR+ LR+        ++ LPCN+QR+IWN +  F I+    TD+ P  ++  V+ L    ++V GNDRIS  AN N+TLL  CLIRS LC K V  + RLS EA EW++GEI   F ++Q +PGEMVG+LAA+SLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN+S+ PK PSLT+ L G AA+D E AK +   LEHTTLRK+  ++ IYYDPDP+ +V+  D+++V  YYE PDFD
Sbjct:   28 RRMSVTEG-GVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKG----KTICEGGEDMD--LTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGE-SKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFD 1195          

HSP 2 Score: 291.582 bits (745), Expect = 7.255e-79
Identity = 175/360 (48.61%), Postives = 238/360 (66.11%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXXX----YXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLP------MMSGVAQNLFMVGGAT-----PMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEA-GMSPS 4817
            +P F   + S ++LRI L RK++TDKKL+++ IAEKI   F  D+ C   D+N D LVLRIR++  ++ K ++ DE  D+     +L  I+  +L ++ LQGI  I KVY+  P TD KKR++I   G+F+ + EW+LETDGT + KVL+ER VD   T+SN I EIF+  GIEA R ++E EM  V+ F G YVNYRHLALLC++MT KG LM+I RHGINRQ+TGAL R SFEETVD+LM+A AHAE DPM+GVSE+I++GQL +MGTGCFD+L++  +      +P      M+ G A  +F+ GG+T     PM   +   +    S     ++ T  G +FSPS  S+A GMSPS
Sbjct: 1191 MPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAA--MFIGGGSTPSMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPS 1548          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpIIIC160 (gene:FBgn0030687 transcript:FBtr0300811)

HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0
Identity = 385/1153 (33.39%), Postives = 603/1153 (52.30%), Query Frame = 1
Query:  376 KPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREI-MKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDY------------SMETKDSDDGKG----KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM-FLPSWNGVM----PKPTIAKPQRLWTGKQLFSLII----PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGN-FFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDP 3732
            +P   G++D R G   K +MC+TC   ++EC GHFG+++LA PV++IG+    I IL+ +C  C+ +++   D ++ E  +     SY  +  L   +  + KKV  C      +   +KG   +       +   ++   +D             +   +D +   G     + L    V+++F++I   D  ++G     + P+ +I+T + VPP  +RP+++    +G   DDLT K +EI+ +N+ I++    G    +I E  + LQ HVA    +E + +P+ +    +  + + QRLKGK GR R NL GKR D++ RTVI+ DPNL ++QVGVP  +A+ LT+PERV P N + +++LVRNG +M+PGA +V +            +   +  +L  G++VERH+ + D V+FNRQP+LHKMS+M HR KV P  TFR N     PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++   +++  QD +T    +T ++ FL   E M L   FL + +  M    P P + KP+RLWTGKQ+FSL++      +V  N  +     + +    K +   D+ + I N +L+ G++ K T+GS +   +  + L    +         +  + + +L   G + GI D   +    +  +  +N       + I    +  L   PG +  +T E  +   L+  R++   +    L   NS  +M +SG+KGS INISQ+IACVGQQ + GKR+P GF+ R LPHF +    P +RGFV+NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K +E ++V YD TVRN +++++      D + GG                         D +D +S     K V ++ ++ D   ++ A+  Q K DR    E + E+    L  P         A+  FK+DV               RN  N +     + RI     R          +    C ++ C   L+ E L   +  I + + ++   PG  VG++AA+S+GEP TQMTL TFHFAGV++ N+T GVPR+ EIIN ++   TP +T  L       +E A+++ A +E TTL +L+   E+   P
Sbjct:   47 QPVPYGVLDRRMGISTKDAMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLL-----KILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRN----KDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMV------DTIYGG-------------------------DGLDPVSMETRNKPV-DLVHQYD---NLRAQHPQGK-DRPLNAEEMSEALETLLRTP-----EFAEARDDFKLDV---------------RNHINTV-----SKRIGQLQKRYE--------KCIDLCHQIEC---LTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAEL--ENCHSMEFARQVKARIEKTTLAELSSYVEVVCGP 1115          

HSP 2 Score: 105.531 bits (262), Expect = 3.600e-22
Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 3
Query: 4158 DFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGAT 4688
            D  +   + L  +G  L  V+A   V  + T SN+I EI++T GIEAAR  I +E+T V+   G  V++RH+ LL   MT +G ++ I RHG+ +        +SFE+T D L +A  + + D + GVSE I+LG  A +GTG F +L    Q ++ Q  P+   +  +L ++   T
Sbjct: 1209 DARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQ---QHEDKQVPPIEPTICSSLNLLPSKT 1382          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpI1 (gene:FBgn0019938 transcript:FBtr0087511)

HSP 1 Score: 411.764 bits (1057), Expect = 2.379e-117
Identity = 313/978 (32.00%), Postives = 479/978 (48.98%), Query Frame = 1
Query: 1030 KLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRI-----DLKRRPDSSDIQLSYGE----IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHL----LMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLI-------------------IPGK-VNCNRTH----STHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLY-------------------NAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSA--QKSLSKY--NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD---GGFVEFQVLPTYKINNLN-----FERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNI-FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLA----VSSEIYYDPD 3735
            KLTE  K   +  + E    A   +     +LQ  V  L+D       V + +  +  + LKQ ++ K G +RS++MGKR +Y ARTVIT DPN+N+D++G+P   A+ L++P  VT +N   L+++V NG  ++PGA ++  +NG        +  +R   + + LS  +    IV RH+LN D ++ NRQP+LHK S+MGH+ ++L    TFRL+ S    YNADFDGDEMN H PQS+ A AE  NL  V    + P+   P+  ++QD + +  K+++R  F N  +   L    L  L     ++P PTI KP  LW+GKQ+ S I                   I GK  N +R       T+PE  D         ++++V I NG+L++G+L K+  G+++  L+H +      D           V   +L  EG T+G+ D L                    N+A    ++       D++ + +   +   +  +  R LL   + K   +L+   +   S+   +  ++K+  N+  LMV+SGAKGS +N  Q+   +GQ  +EGKR P     ++LP F   +  P+S GF++  ++ G+ P +FFFH M GREG+IDTAVKT+ +GY+QR L+K +E + V YD TVR+  + ++Q  YGEDGLD     F   +    +   N        +     D + + ++ RH    R  E +  A + A      E+L+ + E  R     S  GR      + +L W           KK D +   +  K    C +  V      +   +    T             +K+I D      AL+  I +I  +   KS   PGE VG +AA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ + S N KTPS+ I +        E   K+  +L   TL  L     VS+ +  DP+
Sbjct:  349 KLTEEAKAAYQTLKGE---TAHEKLYTAWLALQMSVDVLLD-------VNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP-PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDL--------SESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAY---VKDSKFRVLL---DRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKL-W-----------KKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERT-------------RKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQHQAE---KLRINLNSVTLANLLEYVHVSTGLTLDPE 1273          

HSP 2 Score: 78.1814 bits (191), Expect = 7.857e-14
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 3
Query: 4131 KRLIINSKGDFEKVEEWILETDGTCLPKVLAE-RYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            KR II    D    ++ +L+TDG  + ++    + +D     SN I  I  T+GIEAA   I  E++NV    G  V+ RHL+L+ + MT  G    + R G+    +  L + SFE ++  L  A      D +   S  +M+G   R GTG F++L
Sbjct: 1486 KRAIIYKGTD----DDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGME-HSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638          

HSP 3 Score: 51.6026 bits (122), Expect = 9.508e-6
Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDK-YSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKI 603
            G     GL D R G   +    C TC   + +CPGH GHI L  PVYN  + + + ++L   C  C KL +  H+ +I
Sbjct:   44 GHAIPGGLYDIRMGSYGRCMDPCGTCL-KLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEI 120          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78])

HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0
Identity = 712/1176 (60.54%), Postives = 901/1176 (76.62%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G  RKR   +++ CK    C       N    E  E E         GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRI++E+ II+G + KY+RPE MI+TVL VPP+AVRPA+VM  S +  DDLTHKL +IVK+NN++++ E++G A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D +VFNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N  RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTVVNNWLL EGH+IGI D++ + AT ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ + T K ++  FE+ F+FD  +   L R L E  V+++   A + + ++ E+E+++ DRE LR     +   ++ LPCN+ R+IWNA+  F+I+    TD+ P  +V+ V+ L  +L++V G+D++S  A  N+TLL    +RS LC K++  + RLS EA +W++GEI   F +S  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTR 1203          

HSP 2 Score: 288.115 bits (736), Expect = 9.852e-78
Identity = 174/369 (47.15%), Postives = 245/369 (66.40%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSGVA----QNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXT---GFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850
            +P F   + S ++LRI L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H E DPMKGVSE+IMLGQLA  GTGCFD+L++  +      +P  + G++      +F     +PM+  SP ++ ++     +  + +   G G+    +GFS +  S + G   G+SP  SP
Sbjct: 1196 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1564          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103])

HSP 1 Score: 560.066 bits (1442), Expect = 1.781e-170
Identity = 324/884 (36.65%), Postives = 511/884 (57.81%), Query Frame = 1
Query:  349 IYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDDG---KGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNA----ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            +Y + T   KP + G++D R G  +K   C+TC  N+++C GH+G+++L  P ++IGY + I+ IL+ +C  CS +L+   +  +  + +++   +Y ++  L   I ++C+K      CN      ++C  GL  II +        V P         D ++E     +    + ++ L    V+ +F+RI ++D  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++    G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LT+PE+V   N + +++LVRNG  ++PGA F+ + +   + +KR       +    +L +G++VERHM++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF +  +   ++  +           +P P I KP RLWTGKQ+FSLI+    +C    +   + +   G  + +   D+ V+I N +L+ G + K TLGS S  ++ +I+  +    +  +  + +  +   +L   G +IGI D         A +E +     K  D+  D +  G    L   PG +  +T E  +   L+  RD  GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   41 LYSQDTSH-KPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEEKLQFLDYLRRPGLAYLQKRGLKKKISDKCRKKTVCLNCNAFNGSVKKC--GLLKIIHEKYKSTKKVVDPAVSDFLQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFSLILKPSKSCPVMANLRTKGKQYCGKGEDLCANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYEKC-DEYIDALKTGR---LQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913          

HSP 2 Score: 105.916 bits (263), Expect = 3.691e-22
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVR 3777
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP ++  L      D + A+ +   +E T L +++   E  + PD    +V+   D +R
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANL--DTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTFILVKLSLDRIR 1138          

HSP 3 Score: 93.2041 bits (230), Expect = 2.844e-18
Identity = 56/178 (31.46%), Postives = 98/178 (55.06%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++S+  +++ + +   K +L++                +G  +  V+A   V+   TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++M++KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1202 QGIPEVSRAVIHIDEQSGKQKFKLLV----------------EGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286])

HSP 1 Score: 326.25 bits (835), Expect = 9.392e-90
Identity = 234/757 (30.91%), Postives = 360/757 (47.56%), Query Frame = 1
Query:  904 GFNYKYSRPESMILTVLAVPPMAVRP-------------------------------AIVMNHSGKAHDDLTHKL---TEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMD--NESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL----KRRPDSSDIQL---SYGE------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLI-------------------IPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY----NAATREEIKFNI---NKAKDDVFDTITKGHSNELNSTPGRSLLQT-----------FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            GFN     PE   L +L VPP   RP                                ++ +   KA +    +L   +E  KV  EI Q+    +    + +K  S   H+ +L++   +S    +  +K       ++Q L+ K G  R ++MGKR DY AR+VI  D  +  +++G+P   A  LT+P+ VTP+N K ++Q V NG  ++PGA  V+ E+G R  L    + + ++   QL   S G+      IV RH+ N D ++ NRQPTLH+ S+  H  ++LP     RL+ +    YNADFDGDEMN H PQS+ + AE   L   ++  + P+  +P+  ++QD + +   MT+R  F    +   L+     + G+  K        PT+ KP  LWTGKQ+ S +                   IPGK     +    P       Y   S  +++V+I  G+L+MG+L K   GSS+  L+H        +  G   + +  +   +L L+ G T+G+ D L     N   ++ IK ++   +KA    F+        E       + L             F+E+VN + N                 N+  +MV SGAKGS +N  Q+   +GQ  +EG+R P     ++LP F   +  P S GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+    ++Q  YGEDGLD
Sbjct:  274 GFN-----PEVFFLELLVVPPCRYRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPKVT-EIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEK----FPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALV-----YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPG------YVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1009          

HSP 2 Score: 82.4185 bits (202), Expect = 5.745e-15
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 3442 PGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL--GAAAKDVEIAKK 3663
            PGE VG +AA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ V S N KTP ++I ++    A K V+  +K
Sbjct: 1191 PGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRK 1267          

HSP 3 Score: 69.707 bits (169), Expect = 4.442e-11
Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G    NGL D   GP D   +C TC  + S CPGHFGHI L  PVYN  + +K+  ++R  C  C  L
Sbjct:   43 GNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHIL 110          

HSP 4 Score: 65.855 bits (159), Expect = 5.599e-10
Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = 3
Query: 4134 RLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598
            R ++N     +  +E +L T+G  + ++      +D +   SN +  +  T+GIE A   IE E+ +V +  G  V+ RHL+L+ + M  +G    ++R GI +  +  L + +FE +   L +A      D +   S  +++G++ + GTG FD+
Sbjct: 1525 RCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1679          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286])

HSP 1 Score: 325.865 bits (834), Expect = 1.482e-89
Identity = 234/757 (30.91%), Postives = 360/757 (47.56%), Query Frame = 1
Query:  904 GFNYKYSRPESMILTVLAVPPMAVRP-------------------------------AIVMNHSGKAHDDLTHKL---TEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMD--NESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL----KRRPDSSDIQL---SYGE------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLI-------------------IPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY----NAATREEIKFNI---NKAKDDVFDTITKGHSNELNSTPGRSLLQT-----------FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            GFN     PE   L +L VPP   RP                                ++ +   KA +    +L   +E  KV  EI Q+    +    + +K  S   H+ +L++   +S    +  +K       ++Q L+ K G  R ++MGKR DY AR+VI  D  +  +++G+P   A  LT+P+ VTP+N K ++Q V NG  ++PGA  V+ E+G R  L    + + ++   QL   S G+      IV RH+ N D ++ NRQPTLH+ S+  H  ++LP     RL+ +    YNADFDGDEMN H PQS+ + AE   L   ++  + P+  +P+  ++QD + +   MT+R  F    +   L+     + G+  K        PT+ KP  LWTGKQ+ S +                   IPGK     +    P       Y   S  +++V+I  G+L+MG+L K   GSS+  L+H        +  G   + +  +   +L L+ G T+G+ D L     N   ++ IK ++   +KA    F+        E       + L             F+E+VN + N                 N+  +MV SGAKGS +N  Q+   +GQ  +EG+R P     ++LP F   +  P S GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+    ++Q  YGEDGLD
Sbjct:  283 GFN-----PEVFFLELLVVPPCRYRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPKVT-EIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEK----FPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALV-----YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPG------YVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1018          

HSP 2 Score: 82.4185 bits (202), Expect = 6.206e-15
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 3442 PGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL--GAAAKDVEIAKK 3663
            PGE VG +AA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ V S N KTP ++I ++    A K V+  +K
Sbjct: 1200 PGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRK 1276          

HSP 3 Score: 69.707 bits (169), Expect = 4.447e-11
Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G    NGL D   GP D   +C TC  + S CPGHFGHI L  PVYN  + +K+  ++R  C  C  L
Sbjct:   43 GNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHIL 110          

HSP 4 Score: 65.855 bits (159), Expect = 5.605e-10
Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = 3
Query: 4134 RLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598
            R ++N     +  +E +L T+G  + ++      +D +   SN +  +  T+GIE A   IE E+ +V +  G  V+ RHL+L+ + M  +G    ++R GI +  +  L + +FE +   L +A      D +   S  +++G++ + GTG FD+
Sbjct: 1534 RCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1688          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296])

HSP 1 Score: 1480.31 bits (3831), Expect = 0.000e+0
Identity = 716/1182 (60.58%), Postives = 906/1182 (76.65%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   ++E CK    C                 DE  + EKG       GC   QP+ RR GL+   E K  + D  + K  L   +V E+FKRI++E+C I+G + +++RPE +I+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLI+PG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ +A T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ F+FD  +   L R L E  V+EI ++A +  +++ E+E++K DRE LR  +  +   ++ LPCN+QR+IWNA+  F I+    +D+ P  +V  VR L  +L++V G+D +S  A  N+TLL    +RS LC ++++ + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKG-----HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKEDREVLR-VIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 67.781 bits (164), Expect = 2.505e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 3
Query: 4482 TVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILM 4604
            +VD+LMEA AH E DPMKGVSE+I LGQLA  GTGCFD+L+
Sbjct: 1398 SVDVLMEAPAHGESDPMKGVSENIFLGQLAPAGTGCFDLLL 1438          

HSP 3 Score: 55.4546 bits (132), Expect = 1.282e-6
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML 3977
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++
Sbjct: 1197 MPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296])

HSP 1 Score: 1476.84 bits (3822), Expect = 0.000e+0
Identity = 716/1182 (60.58%), Postives = 906/1182 (76.65%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   ++E CK    C                 DE  + EKG       GC   QP+ RR GL+   E K  + D  + K  L   +V E+FKRI++E+C I+G + +++RPE +I+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLI+PG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ +A T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ F+FD  +   L R L E  V+EI ++A +  +++ E+E++K DRE LR  +  +   ++ LPCN+QR+IWNA+  F I+    +D+ P  +V  VR L  +L++V G+D +S  A  N+TLL    +RS LC ++++ + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKG-----HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKEDREVLR-VIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 67.781 bits (164), Expect = 2.482e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 3
Query: 4482 TVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILM 4604
            +VD+LMEA AH E DPMKGVSE+I LGQLA  GTGCFD+L+
Sbjct: 1417 SVDVLMEAPAHGESDPMKGVSENIFLGQLAPAGTGCFDLLL 1457          

HSP 3 Score: 55.8398 bits (133), Expect = 1.027e-6
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML 3977
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++
Sbjct: 1197 MPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 572.392 bits (1474), Expect = 5.791e-175
Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            P   G++D R G  +K   CQTC  N++EC GH+G+++L  P +++GY + +I IL+ +C  CS++L+N  + K   + +K+   +Y ++  L   I ++C+K KT  + C       K  GL  II +        V P         D ++E     +S  G+ ++ L    V+ + ++I  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++    G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N + +++LV+NG  ++PGA F+ + +       +  +   I  +L +G+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LTA   +T++DTF + A+   ++  +           +P P I KP  LWTGKQ+FSLI+ P   N  R +      +  G  + + H D+ V I+N +L+ G L K TLGS S  ++ +I+  +    +  +  + +  +   +L   G +IGI D              + KAK D+ D         I   ++ +L   PG S  +T E  +   L+  RD  GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   31 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 894          

HSP 2 Score: 105.916 bits (263), Expect = 5.637e-22
Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T  L      D + A+ +   +E T L +++   E  + PD
Sbjct:  985 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1105          

HSP 3 Score: 94.3597 bits (233), Expect = 1.718e-18
Identity = 57/178 (32.02%), Postives = 98/178 (55.06%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +++ + +  +K +L++                +G  L  V+A   V    TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++MT+KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1183 QGIPEVARAVIHIDEQSGKEKYKLLV----------------EGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1344          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 572.392 bits (1474), Expect = 9.795e-175
Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            P   G++D R G  +K   CQTC  N++EC GH+G+++L  P +++GY + +I IL+ +C  CS++L+N  + K   + +K+   +Y ++  L   I ++C+K KT  + C       K  GL  II +        V P         D ++E     +S  G+ ++ L    V+ + ++I  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++    G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N + +++LV+NG  ++PGA F+ + +       +  +   I  +L +G+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LTA   +T++DTF + A+   ++  +           +P P I KP  LWTGKQ+FSLI+ P   N  R +      +  G  + + H D+ V I+N +L+ G L K TLGS S  ++ +I+  +    +  +  + +  +   +L   G +IGI D              + KAK D+ D         I   ++ +L   PG S  +T E  +   L+  RD  GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   49 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 912          

HSP 2 Score: 105.916 bits (263), Expect = 5.920e-22
Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T  L      D + A+ +   +E T L +++   E  + PD
Sbjct: 1003 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1123          

HSP 3 Score: 94.3597 bits (233), Expect = 1.772e-18
Identity = 57/178 (32.02%), Postives = 98/178 (55.06%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +++ + +  +K +L++                +G  L  V+A   V    TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++MT+KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1201 QGIPEVARAVIHIDEQSGKEKYKLLV----------------EGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1362          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725])

HSP 1 Score: 571.622 bits (1472), Expect = 1.311e-174
Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            P   G++D R G  +K   CQTC  N++EC GH+G+++L  P +++GY + +I IL+ +C  CS++L+N  + K   + +K+   +Y ++  L   I ++C+K KT  + C       K  GL  II +        V P         D ++E     +S  G+ ++ L    V+ + ++I  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++    G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N + +++LV+NG  ++PGA F+ + +       +  +   I  +L +G+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LTA   +T++DTF + A+   ++  +           +P P I KP  LWTGKQ+FSLI+ P   N  R +      +  G  + + H D+ V I+N +L+ G L K TLGS S  ++ +I+  +    +  +  + +  +   +L   G +IGI D              + KAK D+ D         I   ++ +L   PG S  +T E  +   L+  RD  GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   40 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 903          

HSP 2 Score: 105.531 bits (262), Expect = 6.585e-22
Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T  L      D + A+ +   +E T L +++   E  + PD
Sbjct:  994 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1114          

HSP 3 Score: 94.3597 bits (233), Expect = 1.828e-18
Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 3
Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +       K              E++ L  +G  L  V+A   V    TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++MT+KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1192 QGIPEVARAVIHIDEQSGK--------------EKYKLLVEGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1353          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086])

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 7.420e-78
Identity = 180/383 (47.00%), Postives = 242/383 (63.19%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS----------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A      S      +     + + ++GF   +SP+     G            PSPG   SP  SP +P    Y   SPG
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAA----GRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSP---AYEPRSPG 1568          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086])

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 7.600e-78
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836])

HSP 1 Score: 565.074 bits (1455), Expect = 2.734e-172
Identity = 325/871 (37.31%), Postives = 508/871 (58.32%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK-GLNTIIRQG------------CNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            P   G++D R G  +K   C+TC  N+++C GH+G+I+L  P +++GY   +I IL+ +C  C  ++++  + +   + +K+   +Y ++  L   I ++C+K  TC+     +   +K GL  II +              NF+Q       ++++ E  +   G+ ++ L    V+ +FKRI  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N  FL++LVRNG  ++PGA F+ + +   + +KR       +    +L +G+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF + A+   ++  +           +P PTI KP  LWTGKQ+FS+I+ P   N  R +      +  G  + +   D+ V I+N +L+ G + K TLGS S  ++ +I+  +   ++  +  + +  +   +L   G +IGI D        +     +N       + I   ++ +L   PG +  +T E  +   L+  RD  GS+  + L K NS   M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   50 PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913          

HSP 2 Score: 102.449 bits (254), Expect = 5.061e-21
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   +E  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+   TP +T +L      D + A+ +   +E T L +++   E  + PD
Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--DKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPD 1124          

HSP 3 Score: 93.9745 bits (232), Expect = 1.803e-18
Identity = 59/176 (33.52%), Postives = 92/176 (52.27%), Query Frame = 3
Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++S+  +       K              E++ L  +G  L  V+A   V    TTSN+  E+ +T GIEAAR  I  E+   +   G  ++ RH+ LL ++MT+KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1202 QGIPEVSRAVIHIDEQSGK--------------EKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836])

HSP 1 Score: 362.459 bits (929), Expect = 2.738e-108
Identity = 204/560 (36.43%), Postives = 331/560 (59.11%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK-GLNTIIRQG------------CNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII 1980
            P   G++D R G  +K   C+TC  N+++C GH+G+I+L  P +++GY   +I IL+ +C  C  ++++  + +   + +K+   +Y ++  L   I ++C+K  TC+     +   +K GL  II +              NF+Q       ++++ E  +   G+ ++ L    V+ +FKRI  ED  ++  N +  +P  +ILT L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LTFPE+V   N  FL++LVRNG  ++PGA F+ + +       +  +   +  +L +G+IVERH+++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF + A+   ++  +           +P PTI KP  LWTGKQ+FS+I+
Sbjct:   50 PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr1a (polymerase (RNA) I polypeptide A [Source:MGI Symbol;Acc:MGI:1096397])

HSP 1 Score: 331.257 bits (848), Expect = 3.566e-91
Identity = 209/644 (32.45%), Postives = 324/644 (50.31%), Query Frame = 1
Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDR-----IDLKRR---------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWI-------------SHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY--NA-----------------ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            LQ HV  + D+E   L   ++K       ++Q L+ K G  R ++MGKR DY AR+VI  D  +N +++G+P   A  LT+P+ VTP+N + L+Q V NG  ++PGA  VI E+G R     +D  +R         P +   +    ++V RH+ N D ++ NRQPTLH+ S+  HR ++LP     RL+ +    YNADFDGDEMN H PQS+   AE   LA  ++  + P+  +P+  ++QD + +   MT+R  F    + M L+     + G+  K        P I KP  LWTGKQ+ S ++   +  +            G   W+             S  +++V+I  G+L+ G+L K   GSS+  L+H        +  G     +  +   +L L+ G T+G+ D L   NA                 A +  +      + D++       H ++ +      +   F+E+VN   NE                N+  +MV SGAKGS +N  Q+   +GQ  +EG+R P     ++LP F   +F P + GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++++YD TVR+    ++Q  YGEDGLD
Sbjct:  401 LQSHVNIVFDSEMDKL--MLEK----YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELV-----YRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSK-DQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032          

HSP 2 Score: 84.7297 bits (208), Expect = 1.380e-15
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA--AAKDVEIAKK 3663
            + +S   PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ V S N KTP +++ +     A K V+  KK
Sbjct: 1207 WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFDTKKALKKVKSLKK 1290          

HSP 3 Score: 78.1814 bits (191), Expect = 1.119e-13
Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 3
Query: 4116 TTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598
            TT    R ++N   + +  +E +L T+G  LP++      +D     SN I  +  T+GIEAA   IE E+ +V +  G  V+ RHL+L+ + M  +G    ++R GI +  +  L + +FE +   L +A      D +K  S  +++G++ + GTG F++
Sbjct: 1552 TTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1712          

HSP 4 Score: 62.003 bits (149), Expect = 1.001e-8
Identity = 28/68 (41.18%), Postives = 35/68 (51.47%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G P  NGL D   GP D   +C TC  + + C GH GHI+L   VYN    +K+  +LR  C  C  L
Sbjct:   43 GNPSANGLYDLALGPADSKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHML 110          
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P04052|RPB1_DROME (DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila melanogaster OX=7227 GN=RpII215 PE=3 SV=4)

HSP 1 Score: 1469.14 bits (3802), Expect = 0.000e+0
Identity = 700/1176 (59.52%), Postives = 894/1176 (76.02%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQ----------GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD 3804
            R +SV++  G+ + E  + G+PK  GLMDPRQG +D+ S CQTC+GN++ECPGHFGHI+LA+PV++IG+  K IKILR VCF CSK+LV+ H+PKI+EI+ K+ G  RKR   +++ CK       IC+  E+ +  L    +Q          GC   QP  RR GLD + E K  + D  + K  + A +V E+ K I++E+C I+G + KY+RP+ MI+TVL VPP+AVRPA+VM  + K  DDLTHKL++I+K NNE+R+ E +G A+ +I E    LQ+HVATL+DN+   +P A+QKSG+PLK++K RLKGK GR+R NLMGKR D++ARTVIT DPNL +DQVGVPR+IAQNLTFPE VTPFN   +Q+LVR G + YPGAK+++R+NG+RIDL+  P SSD+ L  G  VERH+ +DD V+FNRQPTLHKMSMMGHRVKVLP+STFR+NLS T PYNADFDGDEMNLH+PQS E  AE+ N+    + +ITPQ+N+PVM IVQD+LTA  KMT RD F+   ++M+LLMFLP+W+  MP+P I KP+ LWTGKQ+FSLIIPG VN  RTHSTHP+ ED GPYKWIS  DT+V++E+G+LIMGILCKK+LG+S+GSL+HI  LE   D  G F+ NIQTV+NNWLLFEGH+IGI DT+ +  T  EI+  I KAKDDV + I K H+ EL  TPG +L QTFE KVN ILN+ARDKTG SA+KSL++YN+   MVVSG+KGS INISQVIACVGQQNVEGKRIP+GF++RTLPHFIK D+GPESRGFVENSYLAGLTP+EF+FHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + QLIQLRYGEDGL G  VEFQ +PT K++N +FE+ F+FD  +   + +  T+  ++E+ + ++ + +++AEW++L  DR+ LR+        ++ LPCN+QR+IWN +  F I+    TD+ P  ++  V+ L    ++V GNDRIS  AN N+TLL  CLIRS LC K V  + RLS EA EW++GEI   F ++Q +PGEMVG+LAA+SLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN+S+ PK PSLT+ L G AA+D E AK +   LEHTTLRK+  ++ IYYDPDP+ +V+  D+++V  YYE PDFD
Sbjct:   28 RRMSVTEG-GVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKG----KTICEGGEDMD--LTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGE-SKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFD 1195          

HSP 2 Score: 291.582 bits (745), Expect = 7.272e-78
Identity = 175/360 (48.61%), Postives = 238/360 (66.11%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXXX----YXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLP------MMSGVAQNLFMVGGAT-----PMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEA-GMSPS 4817
            +P F   + S ++LRI L RK++TDKKL+++ IAEKI   F  D+ C   D+N D LVLRIR++  ++ K ++ DE  D+     +L  I+  +L ++ LQGI  I KVY+  P TD KKR++I   G+F+ + EW+LETDGT + KVL+ER VD   T+SN I EIF+  GIEA R ++E EM  V+ F G YVNYRHLALLC++MT KG LM+I RHGINRQ+TGAL R SFEETVD+LM+A AHAE DPM+GVSE+I++GQL +MGTGCFD+L++  +      +P      M+ G A  +F+ GG+T     PM   +   +    S     ++ T  G +FSPS  S+A GMSPS
Sbjct: 1191 MPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAA--MFIGGGSTPSMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPS 1548          
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P08775|RPB1_MOUSE (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 5.316e-77
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P24928|RPB1_HUMAN (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 5.008e-77
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P11414|RPB1_CRIGR (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=2 SV=2)

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  K +K+LR VCF CSKLLV+ ++PKI++I+ K++G  +KR   +++ CK       IC+  EE +        +G   + ++    GC   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+C ++G   +Y+RPE MI+TVL VPP++VRPA+VM  S +  DDLTHKL +IVK+NN++R+ E+NG A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L T K +N  FE+ FRFD  +   L R L E  V+++ + A I  +++ E+E+++ DRE LR  +  +   ++ LPCN+ R+IWNA+  F I+    +D+ P  +V  V+ L  +L++V G+D +S  A  N+TLL    +RS LC +++  + RLS EA +W++GEI + F ++  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I   LEHTTLRK+  ++ IYYDP+P+++VV  D++WV  YYE PDFDV +
Sbjct:   32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206          

HSP 2 Score: 288.886 bits (738), Expect = 5.008e-77
Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901
            +P F   + S ++LR+ L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +G A P                         G+ F        G +PSP  G SP M+P     TP    YG  SP    GM P
Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541          
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P35074|RPB1_CAEBR (DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-1 PE=3 SV=2)

HSP 1 Score: 1444.87 bits (3739), Expect = 0.000e+0
Identity = 693/1168 (59.33%), Postives = 886/1168 (75.86%), Query Frame = 1
Query:  352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL----------NTIIRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            +PE  ++GKPK  GLMDPRQG +D+   C TC+GN+++CPGHFGH+ LA+PV++IG+  K +KILR VCF C +LL++  +P++ +I+KKT G+ +KR  LI++ CK       +C+ + E E GL             +  GC   QP +RR G+D + E K   + D  + K  L A +V+EVFK+I++ED +++G + +++RPE MI TVL VPP+AVRPA+V   S K  DDLTHKL++I+K N ++++ E NG A+ ++ +    LQYHVATL+DN    LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN   LQ+LV  G T YPGAK++IRENG R+DL+  P ++D+ L  G  VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E  AEI  +A V + +ITPQ+N+PVM IVQD+L A   MT RD F++   MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN  RTHSTHP+SEDSGPYKWIS  DT+VLIE+G+L+ GI+C KT+G S+G+L+H++ALE   +   NF+++IQTV+N WLL EGHTIGI DT+ + +T  +I+  I KAK DV D I K H+++L  TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F  MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN  FER+FR D+ D   L ++ +E  V+EI+   D ++ +++EW QL+ DR  LR+        ++ LPCN+QRLIWNA+  FK+D+ K  ++ P  ++N VR L  +LI+V GND IS  A  N+TLL+  L+RS LC KK+    +L+ EA +W++GEI   F ++   PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+  KTPSLT+ L GAAAKD E AK +   LEHTTL+K+  ++ IYYDPDP+N+V+  D +WV  +YE PD D+ +
Sbjct:   38 FPEVYENGKPKMGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTSGNPKKRLALIYDLCKS----KSVCEGAAEKEDGLPDDMDDPMNEGKKVPAGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTR 1200          

HSP 2 Score: 301.597 bits (771), Expect = 5.504e-81
Identity = 188/388 (48.45%), Postives = 248/388 (63.92%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML---XXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGA-------TPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895
            +P     + S ++LRI L RK++ DKKL+++ IA++I   F  D+     D+N + LV R+R+    K  + +EE+ D+MED  +L  I+  +L ++ LQGIP ISKVY+++P TDDKKR+II  +G F+ V +WILETDGT L +VL+ER +D   TTSN I EIFE  GIEA R +IE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA  HAE DP+KGVSE+IMLGQLAR GTGCFD++++  +      +P    +   ++  G A       +P +S        + S  +SP         FSP+G  + G SP    G+SP         +SP+TP    YG  SPG+
Sbjct: 1193 MPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNEGGWSPASPGDPLGALSPRTPA---YGGMSPGV 1577          
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A1S6KMI6 (DNA-directed RNA polymerase subunit OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 1903.64 bits (4930), Expect = 0.000e+0
Identity = 895/1168 (76.63%), Postives = 1017/1168 (87.07%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKG-KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816
            + LSV    GIIY EKTQDGKPKK+GLMDPRQGP DKYS CQTC G+V+ECPGHFGHINLARPV++IG+KEKIIKILRSVCFKCSKLL +V+   ++EI+KKTE + RKRFD +++EC++ K C+V   + +E +     + R GC +VQP FRRNGL+Y +  KD       KQPL A+QV+E+F+RI+ EDC++MGFN KYSRPE MI+TVL+VPP+AVRPA+VMNH+GK+HDDLTHKLTE+VKVNNEIR AEENGVASTI+LEKENSLQYHVAT +DNES FLP AIQKSGRPLK+LKQRLKGKHGR+RSNLMGKRTDY+ARTVITADPNLNLDQVGVPR IAQNLTFPE+VTPFNK +LQQLV+NGTMYPGA FVIRENGDRIDLKRRPDSSDIQL YGE VERHMLNDDFVVFNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLH+PQS E  AE+++LARV KL+ITPQSN+PVMSIVQD+LTACNKMT RD FLN AE+MHLLM+LP+WNG +PKP I KP RLWTGKQ+FSLIIPG+VNC RTHSTHPE E++GPYKWIS  DT+VLIE+G+LI GILCKKTLGSS+GSL+HIIALEQ  D+ G FFNN+QTVVNNWLL EGHTIGIVD LY+A TREEIK  I++AK+ VF+TI K H+ EL STPG +L QTFE  VN ILN+ARDKTGS AQKSLSKYN+FNLMV+SGAKGSKINISQVIACVGQQNVEGKRIPFGF+QRTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD+TVRNQIDQLIQ RYGEDGLDG FVEFQ LPT+K     FE+ FRFDI + D+LSR+LTEKRV+EI  EAD +  +D EW+QL  DRE +R+ +K  TGGR+ LPCN+ RL+ N +  FKID+LKKTDIKP DI+ KV NLC +LIVV G+D IS TAN N+TLL CCLIRS LCCKKVI + RLS EA +W++GEI+  F +S V PGEMVG+LAAESLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSRNPKTPSLT+ L G AAKD E+AK IAA LEHTTLRKLAV SEIYYDP+PE+SV+E DR+WVRTYYE PDFD+DKK
Sbjct:   28 KRLSVVGENGIIYAEKTQDGKPKKDGLMDPRQGPFDKYSYCQTCGGSVAECPGHFGHINLARPVFHIGFKEKIIKILRSVCFKCSKLLADVNSSNVKEILKKTEINPRKRFDFMYDECRRNKVCSVPNSDRDEMDLKTQEMSRSGCGYVQPIFRRNGLEYFVTLKDDSSDSDSKQPLRAYQVLEIFRRITEEDCLLMGFNPKYSRPEGMIMTVLSVPPLAVRPAVVMNHTGKSHDDLTHKLTEVVKVNNEIRTAEENGVASTILLEKENSLQYHVATFIDNESPFLPTAIQKSGRPLKTLKQRLKGKHGRIRSNLMGKRTDYSARTVITADPNLNLDQVGVPRMIAQNLTFPEKVTPFNKHYLQQLVKNGTMYPGAAFVIRENGDRIDLKRRPDSSDIQLQYGETVERHMLNDDFVVFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTSPYNADFDGDEMNLHLPQSLETKAEVSDLARVTKLIITPQSNKPVMSIVQDTLTACNKMTTRDVFLNRAEVMHLLMYLPTWNGRLPKPAIYKPLRLWTGKQIFSLIIPGRVNCIRTHSTHPEPEENGPYKWISPGDTKVLIEDGELISGILCKKTLGSSAGSLIHIIALEQHPDEAGGFFNNVQTVVNNWLLIEGHTIGIVDALYDAKTREEIKQTIDRAKEAVFETIDKAHNYELQSTPGNTLRQTFETTVNKILNDARDKTGSCAQKSLSKYNNFNLMVMSGAKGSKINISQVIACVGQQNVEGKRIPFGFQQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDSTVRNQIDQLIQFRYGEDGLDGAFVEFQSLPTFKPTMAEFEKRFRFDISNEDELSRYLTEKRVREITTEADTICKLDTEWDQLCKDRELIRDIVKHETGGRVVLPCNINRLVTNGQKIFKIDLLKKTDIKPMDIIEKVENLCTDLIVVKGDDNISKTANENATLLFCCLIRSMLCCKKVIDEYRLSPEAFDWVLGEIKTRFNQSLVQPGEMVGALAAESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTVFLTGNAAKDAEMAKSIAARLEHTTLRKLAVKSEIYYDPEPESSVIEGDREWVRTYYELPDFDIDKK 1195          

HSP 2 Score: 518.85 bits (1335), Expect = 6.544e-149
Identity = 289/374 (77.27%), Postives = 323/374 (86.36%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXX--XXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904
            +P F   +KS Y+LRIVL RKK+TDKKL+LQ+IAEKITEYF+NDIICH+PD+NL+LVLRIRMLKK+DEK++E  EMEDRKYLEL++NLILDEICLQGIPQISKVY+  P TDDKK+++INS G FE   EWILETDGTCL KVLAER VDSETT SNHITEIFETFGIEAARNAIE EM +VISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLA++GTGCFDILMN+ + +EAQ LPMMSGVA NL+MVGGATPMNSASPQL+ ++   +          FG +FSP   SE GMSP+P L FSPMMSPKTP DY +G  SP MNP+
Sbjct: 1187 LPDFDIDKKSPYLLRIVLTRKKMTDKKLTLQAIAEKITEYFQNDIICHIPDDNLNLVLRIRMLKKEDEKDDEKLEMEDRKYLELVENLILDEICLQGIPQISKVYIHYPKTDDKKKIVINSDGAFEGKAEWILETDGTCLQKVLAERDVDSETTISNHITEIFETFGIEAARNAIEREMHHVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLAKIGTGCFDILMNYEKCNEAQALPMMSGVAHNLYMVGGATPMNSASPQLTPWTTLSSPYTFSPKPNSFGASFSPIAHSEIGMSPNPALAFSPMMSPKTPMDYGFGRYSPSMNPI 1560          
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A183AMI0 (DNA-directed RNA polymerase subunit OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS8165 PE=3 SV=1)

HSP 1 Score: 1621.68 bits (4198), Expect = 0.000e+0
Identity = 770/1168 (65.92%), Postives = 938/1168 (80.31%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL--NTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807
            + +SV+   G+ Y E  + G+PK  GLMDPRQG +D+ S+CQTCSGNVS CPGHFGHI LA+PV++IG+ +K +K+LR VCF CSK+LV+V  P I++I++KT+G  R+R   ++EECK    C +  ++S   E  +  N   R GC   QP+FRR GL+ S E K  + +  + K  L A +V+EVFKRIS+ED I +GF+ +Y+RPE MI+TVL VPP+AVRPA+VM  + +  DDLTHKL +I+K NN++R+ E+NG A+ I+ E+  +LQ+HV TL+DN+   LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN   LQ+LV+NGT+YPGAKF++RENGDRIDL+  P  +D+ L  G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+WNG MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS  DT+V++++G LI GILCKKTLGS +GSL+HI+ALE   + +  FFNNIQTVVNNWLL EGHTIGI DTLY+ ATRE+I   I KAK+ VF+ I + H+ +L  TPG +L QTFE  VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMVKYD TVRNQI+QLIQLRYGEDGLD   VEFQ LP++K ++  FE  FRFDI++   L R + E+ V+ +  ++   A++DAEW QL  DRE LR  +++ T   + LPCN+ RL+ NA+  F+ID L KT++ P  +V  VR  C  L+V+PG+DR+S  AN N+TLL+C LIRS LC KKVI + RLS EAL+W++GE+R  F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L G AA+D E  K + A LEHTTLRKL  S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV
Sbjct:   28 KEMSVTSDGGVKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSTCPGHFGHIELAKPVFHIGFMKKTLKLLRCVCFHCSKILVDVDTPTIQDILRKTKGDNRRRMMFMYEECKTRSEC-LPGEDSAGNENDVMENKTKRAGCGRYQPRFRRIGLEMSAEWKKINEESQERKIALTAERVLEVFKRISDEDSIALGFDPRYARPEWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRTLQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGAGSLIHIVALEHHHEQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATREQIFATITKAKEAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPSFKPSHAAFEHGFRFDINNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADRESLRAVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTNVHPRQVVEMVRETCKRLVVIPGDDRLSKEANANATLLICSLIRSSLCAKKVINEYRLSYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLTGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDV 1193          

HSP 2 Score: 335.109 bits (858), Expect = 6.991e-89
Identity = 179/303 (59.08%), Postives = 219/303 (72.28%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682
            +P F     S ++LRI   RK +T KKLS++ IA+KIT  F ND+ICH+PD+NL LV+RIR++  D      E +   D+MED  +L  I+  +L +I LQGIPQI+KVY+  P T DK R++I   G F+ V EW+LETDGTCL +VLAER VD   T SN I EIFE  GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A  HAECDPM GVSE IMLGQLAR+GTGCFD+L++ A+  EAQ +P+   +   LF   G
Sbjct: 1188 LPDFDVTAISSWMLRIEFARKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLSGVMGMGLFNAPG 1490          
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A4E0RZ98 (DNA-directed RNA polymerase subunit OS=Fasciola hepatica OX=6192 GN=D915_004697 PE=3 SV=1)

HSP 1 Score: 1618.98 bits (4191), Expect = 0.000e+0
Identity = 767/1168 (65.67%), Postives = 935/1168 (80.05%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDES-EECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVD 3810
            + +SV+   GI Y E  + G+PK  GLMDPRQG +D+ S+CQTCSGNVS CPGHFGH+ L +PV++IG+ +K +K+LR VCF CSK+LV+V  P ++EI++KT+G  R+R   ++EECK    C    D++  E +   N   R GC   QP+FRR GL+ S E K  + +  + K  L A +V+EVFKRIS+EDCI +GF+ +Y+RP+ MI+TVL VPP+AVRPA+VM  + +  DDLTHKL +I+K NN++R+ E+NG A+ I+ E+   LQ+HV TL+DN+   LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN   LQ+LV+NGT+YPGAKF++RENGDRIDL+  P  +D+ L  G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+W+G MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS  DT+V++++G LI GILCKKTLGS SGSL+HI+ALE   + +  FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I   I KAKD VF+ I + H+ +L  TPG +L QTFE  VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD   VEFQ LPT+K ++  FE  FRFD+ +   L R + E+ V+ +  ++   A++DAEW QL  DRE LR  +++ T   + LPCN+ RL+ NA+  F+ID L KT + P  +V  VR  C  L+V+PG+DR+S  AN N+TLL+C LIRS LC KKVI + RL+ EAL+W++GE+R  F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L+G AA+D E  K + A LEHTTLRKL  S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV+
Sbjct:   28 KEMSVTSDGGIKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSNCPGHFGHVELTKPVFHIGFIKKTLKLLRCVCFHCSKILVDVDSPAVQEILRKTKGDNRRRMTFMYEECKTRTECLSGEDQNGSENDVMENKTRRAGCGRYQPRFRRIGLEISAEWKKINEESQERKIALTAERVLEVFKRISDEDCISLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRILQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWSGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVAMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPTFKPSHAAFEHGFRFDVGNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADREALRSVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTTVHPRQVVEMVRETCKRLVVIPGDDRLSKEANSNATLLICSLIRSSLCAKKVISEYRLNYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLIGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDVN 1194          

HSP 2 Score: 332.028 bits (850), Expect = 6.837e-88
Identity = 178/303 (58.75%), Postives = 218/303 (71.95%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682
            +P F     S ++LRI   RK +T KKLS++ IA+KIT  F ND+ICH+PD+NL LV+RIR++  D      E +   D+MED  +L  I+  +L +I LQGIPQI+KVY+  P T DK R++I   G F+ V EW+LETDGTCL +VLAER VD   T SN I EIFE  GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A  HAECDPM GVSE IMLGQLAR+GTGC D+L++ A+  EAQ +P+   +   LF   G
Sbjct: 1188 LPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCCDLLLDSARCQEAQPIPLSGVMGMGLFNAPG 1490          
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A183MI57 (DNA-directed RNA polymerase subunit OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS15732 PE=3 SV=1)

HSP 1 Score: 1618.98 bits (4191), Expect = 0.000e+0
Identity = 771/1169 (65.95%), Postives = 933/1169 (79.81%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLN---TIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807
            + LSV+   GI Y E  + GKPK  GLMDPRQG +D+ S+CQTCSG+VS CPGHFGH+ LA+PV++IG+ +K +K+LR VCF CSK+LV+V   +I+EI++KT+G  R+R   ++EECK    C +  D+  + E  ++    + R GC   QP+FRRNGL+ + E K  + +  + K  L A +V+EVFKR+S+EDC+ +GF+ +Y+RP+ MI TVL VPP+ VRPA+VM  + +  DDLTHKL +I+K NN++R+ E+NG A+ II E    LQ+HV T++DNE   LP AIQKSGRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN   LQ+LV+NGT+YPGAKF++RENGDRIDL+  P  SD+ L  G IVERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN +EMM+LLM+LP+WNG MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPYKWIS  DT+V++++G LI GILCKKTLGS +GSL+HI+ALE   D +  FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I   I KAKD VF+ I + H+ +L  TPG +L QTFE  VN ILN+ARDKTGS AQ+SLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD   VEFQ LPT+K +N  FE  FRFDI +   L R + E  V+ +  ++   +++++EW QL  DRE LR  +K+ T   + LPCN+ RL+ NA+  F+ID L KT+I P  +V  VR  C  LIVVPG+DR+S  AN N+TLLL  LIR+ LC KKVI D RLS EAL+W++GE+R  F ++ +HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L G AA+D E  K + A LEHTTLRKL  S+ IYYDPDP+N+VVE DR+WV TYYE PDFDV
Sbjct:   33 KELSVTADGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQTCSGSVSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRKTKGDNRRRMSFMYEECKTRSEC-ISNDDQVQSENDVSLSSKVKRSGCGRYQPRFRRNGLELTAEWKKVNEESQERKINLTAERVLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKLADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIKQRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEVVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNERVLRRCMPEDVVRSLATDSQTQSELESEWLQLCSDREILRSVIKK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNTVVEEDREWVSTYYELPDFDV 1199          

HSP 2 Score: 335.495 bits (859), Expect = 5.128e-89
Identity = 179/303 (59.08%), Postives = 221/303 (72.94%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682
            +P F     S ++LRI   RK +T KKLS++ IA+KIT  F ND+ICH+PD+NL LV+RIR++  D      + +   D+MED  +L  I+  +L +I LQGIPQI+KVY+  P T DKKR++I   G F+ V EW+LETDGTCL +VLAER VD   T SN I EIFE  GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILMEA  H+ECDPM GVSE+IMLGQLAR+GTGCFD+L++ A+  EAQ +P+   +   LF   G
Sbjct: 1194 LPDFDVSAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLGGVLGMGLFNAPG 1496          
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A2H1CFP7 (DNA-directed RNA polymerase subunit OS=Fasciola hepatica OX=6192 GN=D915_07253 PE=3 SV=1)

HSP 1 Score: 1618.59 bits (4190), Expect = 0.000e+0
Identity = 767/1166 (65.78%), Postives = 934/1166 (80.10%), Query Frame = 1
Query:  322 LSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDES-EECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVD 3810
            +SV+   GI Y E  + G+PK  GLMDPRQG +D+ S+CQTCSGNVS CPGHFGH+ L +PV++IG+ +K +K+LR VCF CSK+LV+V  P ++EI++KT+G  R+R   ++EECK    C    D++  E +   N   R GC   QP+FRR GL+ S E K  + +  + K  L A +V+EVFKRIS+EDCI +GF+ +Y+RP+ MI+TVL VPP+AVRPA+VM  + +  DDLTHKL +I+K NN++R+ E+NG A+ I+ E+   LQ+HV TL+DN+   LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN   LQ+LV+NGT+YPGAKF++RENGDRIDL+  P  +D+ L  G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+W+G MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS  DT+V++++G LI GILCKKTLGS SGSL+HI+ALE   + +  FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I   I KAKD VF+ I + H+ +L  TPG +L QTFE  VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD   VEFQ LPT+K ++  FE  FRFD+ +   L R + E+ V+ +  ++   A++DAEW QL  DRE LR  +++ T   + LPCN+ RL+ NA+  F+ID L KT + P  +V  VR  C  L+V+PG+DR+S  AN N+TLL+C LIRS LC KKVI + RL+ EAL+W++GE+R  F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L+G AA+D E  K + A LEHTTLRKL  S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV+
Sbjct:    1 MSVTSDGGIKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSNCPGHFGHVELTKPVFHIGFIKKTLKLLRCVCFHCSKILVDVDSPAVQEILRKTKGDNRRRMTFMYEECKTRTECLSGEDQNGSENDVMENKTRRAGCGRYQPRFRRIGLEISAEWKKINEESQERKIALTAERVLEVFKRISDEDCISLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRILQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWSGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVAMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPTFKPSHAAFEHGFRFDVGNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADREALRSVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTTVHPRQVVEMVRETCKRLVVIPGDDRLSKEANSNATLLICSLIRSSLCAKKVISEYRLNYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLIGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDVN 1165          

HSP 2 Score: 332.028 bits (850), Expect = 6.738e-88
Identity = 178/303 (58.75%), Postives = 218/303 (71.95%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682
            +P F     S ++LRI   RK +T KKLS++ IA+KIT  F ND+ICH+PD+NL LV+RIR++  D      E +   D+MED  +L  I+  +L +I LQGIPQI+KVY+  P T DK R++I   G F+ V EW+LETDGTCL +VLAER VD   T SN I EIFE  GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A  HAECDPM GVSE IMLGQLAR+GTGC D+L++ A+  EAQ +P+   +   LF   G
Sbjct: 1159 LPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCCDLLLDSARCQEAQPIPLSGVMGMGLFNAPG 1461          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187])

HSP 1 Score: 1466.83 bits (3796), Expect = 0.000e+0
Identity = 711/1177 (60.41%), Postives = 901/1177 (76.55%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G  RKR   +++ CK    C       N    E  E ++ L      G C   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+ +I+G + KY+RPE MI+TVL VPP+AVRPA+VM  S +  DDLTHKL +IVK+NN++R+ E++G A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N  RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTVVNNWLL EGH+IGI D++ +A T  +I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MES+MVKYDATVRN I+Q++QLRYGEDGL G  VEFQ + T K +N  FE+ F+F+  +   L R L E  ++++   A + + ++ E+E+++ DRE LR     +   ++ LPCN+ R+IWNA+  F+I+    TD+ P  +V  V+ L  +L++V G+D +S  A +N+TLL    +RS LC +++  + RLS EA EW++GEI   F +S  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPENDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIHKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVIVNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 292.738 bits (748), Expect = 3.056e-79
Identity = 181/379 (47.76%), Postives = 241/379 (63.59%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892
            +P F   + S ++LRI L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +  A               + + +   S G+  A+SP+  S           PSPG   SP  SP +P    Y   SPG
Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGISVAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPA---YEPRSPG 1566          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187])

HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0
Identity = 711/1177 (60.41%), Postives = 901/1177 (76.55%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV++  GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G  RKR   +++ CK    C       N    E  E ++ L      G C   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+ +I+G + KY+RPE MI+TVL VPP+AVRPA+VM  S +  DDLTHKL +IVK+NN++R+ E++G A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N  RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTVVNNWLL EGH+IGI D++ +A T  +I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MES+MVKYDATVRN I+Q++QLRYGEDGL G  VEFQ + T K +N  FE+ F+F+  +   L R L E  ++++   A + + ++ E+E+++ DRE LR     +   ++ LPCN+ R+IWNA+  F+I+    TD+ P  +V  V+ L  +L++V G+D +S  A +N+TLL    +RS LC +++  + RLS EA EW++GEI   F +S  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPENDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIHKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVIVNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 291.967 bits (746), Expect = 6.206e-79
Identity = 175/369 (47.43%), Postives = 246/369 (66.67%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSGVA----QNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXT---GFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850
            +P F   + S ++LRI L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA  GTGCFD+L++  +      +P  + G++      +F     +PM+  SP ++ ++     +  + +   G G+    +GFS +  S + G   G+SP  SP
Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1565          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103])

HSP 1 Score: 486.108 bits (1250), Expect = 1.368e-144
Identity = 298/879 (33.90%), Postives = 491/879 (55.86%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHD-PKIREIMKKTEGSYRKRFDL---IHEECKK-------------VKTCN---VICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAA---TREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898
            P   G++D R G  +K   C+TC  N+++C GH+G+++L  P ++IGY +  I IL+ +C  CS+++++  +  +  + +++   +Y ++  L   I ++C+K             VK C    +I ++ +  +K ++ I+    +F+Q        D ++E     +S   + ++ L    V+ +F+RI NED  ++  N +  +P  +ILT L VPP+ +RP++         DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LT+PE+V   N + +++LV+NG  ++PGA F+ + +   + +KR       +    +L  G++VERHM++ D V+FNRQP+LHK+S+M H V   P+                         +  + +AT   ANL       +TP++  P+++ +QD LT    +T++DTF + A+   ++  +           +P+P I KP RLWTGKQ+FSLI+    +C    +   + +   G  + +   D+ V+I+N +L+ G L K TLGS S  ++ +I+  +    +  N  + +  +   +L   G +IGI D          ++E+     K  D+  + +  G   +L   PG +  +T E  +   L+  RD  GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+    +IQ  YG DGLD   +E
Sbjct:   50 PLSYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKATIGILQMICKTCSRIMLSKEERQQFLDYLRRPGLAYLQKRGLKKKISDKCRKKNVCLYCSAFNGPVKKCGLLKIIHEKYKTTKKVVDPIVS---DFLQ------SFDIAIEHNKEVESLLSRAQENLNPLVVLNLFRRIPNEDVPLLLMNPEAGKPADLILTRLLVPPLCIRPSV---------DDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVKNGPDVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKLGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIVSSNPY-------------------------IQNNPKATK--ANL-------VTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIVASILVGKDEKIKVTLPRPAIIKPMRLWTGKQIFSLILKPSQSCPVKANLRTKGKQYCGKGEDLCSNDSFVVIQNSELLCGSLDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYKKCDEYIEALNTG---KLQQQPGCTAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 869          

HSP 2 Score: 105.145 bits (261), Expect = 5.151e-22
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T  L      D + A+ +   +E T L +++   +  + PD
Sbjct:  960 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DTEDDADFARLVKGRIEKTLLGEISEYIDEVFLPD 1080          

HSP 3 Score: 92.4337 bits (228), Expect = 4.013e-18
Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = 3
Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +     DD+              +++ L  +G  L  V+A   V+   TTSN+  E+ +T GIEAAR  I  E+   +   G  ++ RH+ LL ++M++KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1158 QGIPEVARAVIH---IDDQ-----------SGRQKFKLLVEGDNLRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1319          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011874.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12476100:12482137:1 gene:ENSAMXG00000011553.2 transcript:ENSAMXT00000011874.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 190.274 bits (482), Expect = 9.291e-51
Identity = 147/446 (32.96%), Postives = 212/446 (47.53%), Query Frame = 1
Query: 2401 FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACV-GQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFE--RNFRFDIDDIDQLSRHLTEKRVQEIRN------------------EADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVR-NLCN-----------ELIVVPGNDRISITANRNSTLL-LCCLIRSYLCCK--KVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL 3627
            F+E+VN + N                 N+  LMV SGAKG + NI   I+C+ GQ  +EG+R P     ++LP F   +  P S GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+    ++Q  YGEDGLD    +F     +     N+E  R  +   + + +L     +   Q I+                       L  + AE E L +D             GR+AL   +           ++  LKKT   P   +   R ++C            E  +   N +    ++  S LL + C +R+ L  K  + +CD                         PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ + S N KTP ++I +L
Sbjct:    6 FKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKG-RSNI--CISCLLGQIELEGRRPPLMPSGKSLPCFQPYEAEPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKENYEVIRKSKCLDEVLAKLDPKAAQSHFQAIKKWKAKHEHASPRTGAFLLFSQKKLGKMKAEAEGLSVDL----------NNGRVALTLQLMEKWKTLDDGSRVKYLKKTSHCPDPCLAVFRPDICFGSVSETFSSMIETYLSQFNIKHEFDSSSGSDLLCMHCSLRNLLQLKWQRALCD-------------------------PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMSIPIL 413          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011881.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12464356:12466989:1 gene:ENSAMXG00000011559.2 transcript:ENSAMXT00000011881.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKC 567
            R LSV      I  +      P  NGL D   GP D   +C TC  + + CPGHFGHI+L  PVYN    +K+  I+R  C  C
Sbjct:   26 RKLSVKSITNSILLDNVGTAAP--NGLYDLALGPADSKEICTTCMQDFTHCPGHFGHIDLHLPVYNPLLFDKLYLIIRGSCLSC 107          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO21 (RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime [Source:SGD;Acc:S000002299])

HSP 1 Score: 1107.43 bits (2863), Expect = 0.000e+0
Identity = 575/1176 (48.89%), Postives = 782/1176 (66.50%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDG--KPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII-RQGCNFVQPKFRRNGLDY-SMETKDSDDGKGKQP----LYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQ-LSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            R++SV+    I +PE   +   + K  GL DPR G +D+   CQTC   ++ECPGHFGHI+LA+PV+++G+  KI K+   VC  C KLL++ H+  +R+ +   +   +KRF  I   CK      ++C+     E     ++ R GC   QP  R++GL       KD   G   +P    L   +++ +FK IS +D   +GFN  +SRPE MILT L VPP  VRP+I  N S +  DDLT KL +I+K N  +   E NG     I E E+ LQ+HVAT MDN+    P A+QKSGRP+KS++ RLKGK GR+R NLMGKR D++ARTVI+ DPNL LDQVGVP++IA+ LT+PE VTP+N   L QLVRNG   +PGAK+VIR++GDRIDL+    + DIQL YG  VERH++++D V+FNRQP+LHKMSMM HRVKV+P+STFRLNLSVT PYNADFDGDEMNLH+PQS+E  AE++ L  V   +++PQSN+P M IVQD+L    K+T+RDTF+   +++++L ++P W+GV+P P I KP+ LW+GKQ+ S+ IP  ++  R         D G    +S  D  +LI +GQ+I G++ KKT+GSS+G L+H++  E+        F NIQ VVN WLL  G + GI DT+ +  T  EI   I +AK  V D   +  +N L +  G +L ++FE+ V   LNEARDK G  A+ +L   N+   MV++G+KGS INI+Q+ ACVGQQ+VEGKRI FGF  RTLPHF K D+ PES+GFVENSYL GLTP EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KA+E +MV YD T RN +  +IQ  YGEDG+D   +E Q L T   ++  FE+ +R D+ + D  L   L E    EI  +  +   +D E++QL  DR+FLRE   +       LP N++R+I NA+ TF ID  K +D+   DIV  V++L   L+V+ G + I   A R++  L CCL+RS L  ++V+ + RL+ +A +W++  I   F +S VHPGEMVG LAA+S+GEPATQMTLNTFHFAGV++K VT GVPRLKEI+NV++N KTPSLT+ L    A D E AK I +++EHTTL+ + ++SEIYYDPDP ++V+  D + ++ ++   D + ++
Sbjct:   28 RAISVAK---IRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDS--KKRFAAIWTLCK----TKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF--------DEG-TTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESG-SEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGE-ANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQ 1183          

HSP 2 Score: 193.356 bits (490), Expect = 1.108e-49
Identity = 136/376 (36.17%), Postives = 208/376 (55.32%), Query Frame = 3
Query: 3810 QKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDI-ICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSP---SGFSEA---GMSPSPGLGFSPMMSP-----KTPHDYFYGLNSPGMNP 4901
            Q+S ++LR+ L R  + DK L++  + E+I + FKND+ +    D +  L++R R+++      E   E +    L+ I+N +L+ I L+G+  I +V + K       R + +  G++ K  EW+LETDG  L +V+    +D     +N   +I E  GIEA R A+  E+ NVI+ DGSYVNYRH+ALL ++MT +G L S+ RHG NR  TGAL R SFEETV+IL EAGA AE D  +GVSE+++LGQ+A +GTG FD++++   L   + +P            GG TP ++ S  ++      +          L FSP   SG ++A   G +   G  +    SP     + P    +G++SPG +P
Sbjct: 1187 QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDH--MLKKIENTMLENITLRGVENIERVVMMK-----YDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL--VKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDE---------LMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO31 (RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21 [Source:SGD;Acc:S000005642])

HSP 1 Score: 573.163 bits (1476), Expect = 1.542e-175
Identity = 334/914 (36.54%), Postives = 518/914 (56.67%), Query Frame = 1
Query:  367 QDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK--IREIMKKTEGSYRKRFDL--IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAH------------------QVVEVFKRISNEDCIIMGFNYKY--SRPESMILTVLAVPPMAVRPAIVMNHSGKAH-DDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNES---TFLPVAIQKSGR--PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIREN---------GDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV----MPKPTIAKPQRLWTGKQLFSLII------PGKVNCNRTHSTH-PESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSG-SLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNF 2952
            +D  PK NG +DP+ G       C TC GN++ C GHFGH+ LA PV++IGY +  I+IL+ +C  CS +L++  D +  + E+ +    + R+   L  I ++CKK + C      +   +K            +   FR  G   + E KD   G+ K+ L AH                  + + +FK+I + DC ++G +      RPE+ I   L  PP+ +RP+++M  S  ++ DDLT KLTEIV  ++ I+   + G++   ++E  + LQ  VA  ++++S     LP +    G+  P++   QRLKGK GR R NL GKR D++ RTVI+ DPNL++D+V VP  +A+ LT+PE+VT +N+  LQ+L+ NG  ++PGA ++++ N         GDR+ L +        L  G++VERH+ + D V+FNRQP+LH++S++ H  K+ P+ TFRLN  V  PYNADFDGDEMNLH+PQ++EA AE  NL  V   ++TP+S  P+++  QD +T    ++ +D+F + A +  LL  +   +G+    +P P I KP  LWTGKQ+FSL+I      P  +N +  +    P    S P + +S  D  V+I   Q++ G++ K  LG     S+ + I  +    +  N  N +  +   +L   G +IGI D       +++ +  +  A     + IT  +  EL + PG +  QT E K+  +L++ R++ G      L  +N+  +M   G+KGS +N+SQ++A VGQQ + G R+P GF+ R+LPHF K    P+S+GFV NS+ +GL+P EF FHA+ GREG++DTAVKTAETGY+ RRLMK++E +  +YD TVR   + ++Q  YG DGLD   +E    P      +NF R++
Sbjct:   44 KDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPE-KDIWVGEWKEVL-AHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAK-------NLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMS--DGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE-MSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQP------VNFNRSW 939          

HSP 2 Score: 105.145 bits (261), Expect = 7.416e-23
Identity = 64/176 (36.36%), Postives = 100/176 (56.82%), Query Frame = 3
Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            +G+P IS+  ++    DD KR ++        VE + L  D  C   V+  R      TT+NH+ E+F   GIEAAR +I  E+   +S  G  V+ RH+ LL ++MT+KG ++ I R G+++     L  +SFE+T D L +A  + + D ++GVSE I+LGQ   +GTG F ++
Sbjct: 1273 KGLPDISRAVIN--IRDDGKRELL--------VEGYGLR-DVMCTDGVIGSR------TTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431          

HSP 3 Score: 89.7373 bits (221), Expect = 3.292e-18
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVS-SEIYYD 3729
            + K+++ PG  +G++ A+S+GEP TQMTL TFHFAGV++ NVTLGVPR+KEIIN S+   TP +   L+     D   A+ +   +E T L  +A    ++Y D
Sbjct: 1078 YRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRVEKTLLSDVAFYVQDVYKD 1179          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPA190 (RNA polymerase I largest subunit A190 [Source:SGD;Acc:S000005868])

HSP 1 Score: 341.273 bits (874), Expect = 1.925e-95
Identity = 236/747 (31.59%), Postives = 371/747 (49.67%), Query Frame = 1
Query:  865 VFKRISNEDCIIM-------GFNYKYSRPESMILTVLAVPPMAVR-PAIVMN--HSGKAHDDLTHKLTE---IVKVNNEIRQAEENGVA---STIILEKENSLQYHVATLMDNESTFLPVAIQKSGR-----PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL------KRR--------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK-------------PTIAKPQRLWTGKQLFSLII-----PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGR--SLLQTFEE-----------------KVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            VF++   E C++          + K  + +S  + VL VPP   R P+ +    H    +  L+  LT    I  +N+++ + +++ V+     +I  +   L     T+ ++ + F+  + +  GR     P+  +KQ L+ K G  R ++MGKR +Y AR+VI+ DPN+  +++GVP   A  LT+PE VT +N   L+Q V NG   +PGA  +  E+G  + L      +R+        P S+    +  + V RH+ N D V+ NRQPTLHK SMMGH+V+VLP   T RL+ + TG YNADFDGDEMN+H PQ++ A AE  NLA  +   +TP S  PV  ++QD ++A   +T +D+F    +    +     +  + P+             PTI KP  LWTGKQ+ + ++     P     N       ++E    Y      +  VL ++G L+ GIL K   G+S   ++H +      +      + +  +  N++     T G+ D L   A   + + +I K   D         +N    TP     LL+  +E                 KVN I ++   K            NS   M +SGAKGS +N+SQ++  +GQQ +EG+R+P     +TLP F   +    + G+V+  + +G+ P E++FH M GREG+IDTAVKT+ +GY+QR L K +E V V YD ++R+    L+Q  YG D +D
Sbjct:  327 VFRK---EQCVLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSR---LMNAFVTIQNDVNAFID-STKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI-----YGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNE----YWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGM-DDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAID 1056          

HSP 2 Score: 88.1965 bits (217), Expect = 1.147e-17
Identity = 52/174 (29.89%), Postives = 92/174 (52.87%), Query Frame = 3
Query: 4080 IPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            IP I +    +P  ++ KR+++    +F+ +  W  E             ++D +  TSN +  + +T+G+EAARN I  E+ NV S     V++RHL L+ ++MT +G  ++ +R G+    T +  + S+E T   L +A    E + +   S  I++G+L  +GTG FD+L
Sbjct: 1501 IPHIDRCVHPEP--ENGKRVLVTEGVNFQAM--WDQEA------------FIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657          

HSP 3 Score: 85.5001 bits (210), Expect = 7.386e-17
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTI 3618
            + +S ++PGE VG +A++S+GEP+TQMTLNTFHFAG  A NVTLG+PRL+EI+   S   KTP +T+
Sbjct: 1174 YMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTL 1240          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39976 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S8F9])

HSP 1 Score: 1385.55 bits (3585), Expect = 0.000e+0
Identity = 690/1185 (58.23%), Postives = 878/1185 (74.09%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCN---------VICDESEECEKGLNTII-------RQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            + +SV+   G+ Y E  + G+PK NGLMDPRQG +D++S CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K LR VCF CSKLLV++++P+++EI+ K+ G  RKR   +++ CK    C          +  D   E EK L  I          GC   QPKFR+  L+ + E K  + D  + K  L A +V E+FKRIS+E+C  +G + K +RP+ MI+TVL VPP+ VRP+IV++ + ++ DDLTHKL +IVK NN +R+ E NG A+ II E    LQYHVATL DNE   LP A+QKSGRPLKS+KQRLK K GR+R NLMGKR D++AR VIT DPNL++DQVGVPR IAQNLTFPE VTPFN   +Q+LVR G   YPGAK++IR+NG+R+DL+  P  SD+ L +G  VERH+ ++D ++FNRQPTLHKMSMMGHRVK+LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E+ AEI  +  V + ++TPQSN+PVM IVQDSLTA  K T RD F+    MM+LLM++P+W+G +P+P I KP+ LWTGKQ+ S+IIPG VN  RTHSTHP+ EDSGPYK IS  DT+  I         LCKK+LG+SSGSL+HIIA+E   D    F++++Q VVNNWLL EGH+IGI D + ++ T +EI+    KAK +V + I K H++EL  TPG +L QTFE +VN ILN+ RDKTG SAQKSLS++N+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKT+ETGYIQRRL+KAME + V YD TVRN  +QLIQLRYGEDG+DG  +EFQ +PT + +   FER F FD  +   ++R+L E  V+++   A  L +++ E+ +L+ DRE LR+ ++ S   R+ALP N+ RLIWNA+ TF I     +D+ P  ++  VR L  +L++V G D IS  A  N+TLL   L+RS LC K+V  +  LS EA EW++GEI   F  S V PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPSLT+ L+G AA+D E+AK +   LEHTTLRK+  ++ IYYDPDP+N+V+  D+D+V  YYE PDFDV +
Sbjct:   28 KQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLVRIYLPNAYCNHGGCGRYQPKFRKTALELTAEWKHVNEDANEKKITLTAERVYEIFKRISDEECNALGMDPKNARPDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRRNELNGAAAHIIAEDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEKDAMMNLLMWIPTWDGKIPQPAILKPRPLWTGKQICSMIIPGNVNVIRTHSTHPDDEDSGPYKHISPGDTKARI---------LCKKSLGTSSGSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDTYDEIQRATKKAKKEVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMPTMRPSKTAFERKFHFDPTNDRWMTRYLQEDLVRDLSGSATALQELEGEFNKLQEDREILRK-IQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVIEGVRELSKKLVIVAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDFDVAR 1202          

HSP 2 Score: 286.96 bits (733), Expect = 6.820e-78
Identity = 177/402 (44.03%), Postives = 245/402 (60.95%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXX---XXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM------MSGVAQNLFMVGGA-----------TPMNXXXXXXXXXXXXXXXXXXXXTG----------FGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNP 4901
            +P F   + S ++LRI L RK++TDKKL+++ I+EKI   F +D+ C   D+N + LVLRIR++       + +E+ D+M+D  +L  I+  +L ++ LQGI  ISKVY++ P  D KKR+++  +G+F+ ++EW+LETDG  L +VL+ER VD   TTSN I EIF   GIEA R A+E EM +VISFDGSYVNYRHLALLC+IMT +G LM+I RHGINRQE GAL RSSFEETVD+LM+A AHAE D ++GVSE I++G+L R+GTG FD++++  +      +P       M G    + +  GA           TP N  +      + S       + G               SP GFS + MSP+PG   SP   P +P+       SPG +P
Sbjct: 1195 MPDFDVARISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNNDDGKMQDDEDVDKMDDDVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCKHGMEIPTNIMGPGMGGAMAAIGVFFGAAGSPSAMSPQMTPWNMGATPAYMEAWSPGMGSGMTPGAASFSPSAASDASGMSPGGFSPSWMSPTPGSPVSP--GPTSPYIPSPAAASPGYSP 1594          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO36291 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SJ34])

HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 417/1228 (33.96%), Postives = 641/1228 (52.20%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLV----------NVHDPKIREIMKKTEGSYRKRFDLIHEEC----------KKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDG---KGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSW--NGV---MPKPTIAKPQRLWTGKQLFSLII-PG-KVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNF-RFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD-VDKKVCMC*ELC*RERKSPIRN*ACKVLLRKSPNISKTIL-YVMFPMRT 3948
            P   G++DP  G   K  MC+TC   +++C GH+G+I+L  PV+++G+    I IL+ VC  C ++L+           +  P I  + KK               C          +KV    ++ ++ +   K ++ II    +F      ++  D ++E          K ++ L   +V+++F++I  +D  ++ F+   S P  +I+  +  PP+ +RP+++    SG   DD+T KLTEIV +N+ IR+    G    +I+E  + LQ   A  +++E + +P+ +Q   +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +DQV VP  +A+ LT+PERVT  N K ++QLV NG   +PGA F+ +   +     +  +   I  QL  G+ VERH+++ D V+FNRQP+LHK+S+M H   V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L  V   ++TP++  P+++ +QD +T    +T +D FL+ + +  L   + +    GV   +P P I KP RLWTGKQ+FS+++ P  KV          +   SG    ++  D+ V+I N  L+ G L K  LGS S  S+ +++  +       +    +  +   +L   G +IGI D        +  +  ++       D I +    +L + PG S   T E  +   L+  RD  G +  + L K N+   M V G+KGS INISQ+IACVGQQ + GKRIP GF+ R+LPHF +    P ++GFV+NS+ +GLTPTEFFFHAMGGREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR     ++Q RYG DGLD   +E +  P      L+F R F     + + +  R LT  R +E      I   I    E     ++F  ET                  + N                   +  K+  +  +  VVP     SIT+N+         I  Y+        NR +   L+  +   R  + ++++ PG  VG++ A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN SR   TP ++ +L     +D E+A+ +   +E T L ++    E  + PD    +++ D + +R      D D +   +C   +L  R  +S +R  +  V+       +K+ L YVM  +R+
Sbjct:   50 PVPYGVLDPHMGTCSKDRMCETCGKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNCCRVLLPPAEKKQFLDTLKKPNISSLAKKGMKKKIVEKCKKISHCPYCEDLNGFVRKVGLMKIVHEKYKTTRKIVDPIIS---DF------QSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMRRILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFLQLQCALYINSEMSGIPLNMQPK-KGTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPGANFIQQRETNTKRFLKYGNRKLIAKQLKIGDTVERHLIDGDVVLFNRQPSLHKLSIMAHLATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGVKNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGKDTGVDIELPPPAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQYTSGEDLCVN--DSFVVIHNSDLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRVARICPFFLSNRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEAVILKELSVIRDHAGKACLRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFKRHSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAVKTAETGYMQRRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKDKP------LDFSRVFSHIQCNHVMREERPLTSSRARE------IAKGIIESSEFEMCSKDFKTET---------------SDFVEN-------------------LAKKIEKIHAQYGVVPH----SITSNK---------IVDYV--------NRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASRKISTPIISAQL--QDDRDQELARAVKGRIERTLLGEVTEYIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSSRKL--RLNQSQVRVHSSAVICVYPTESAKSSLHYVMQQLRS 1194          

HSP 2 Score: 100.908 bits (250), Expect = 4.508e-21
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 3
Query: 4173 EEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            E + L  +G  L  V++   V    TTSN+  E+    GIEAAR  I  E+   +   G  ++ RH+ LL E+M  KG ++ I RHG+ + +   L  +SFE T D L EA  H   DP+ GVSE I++G    +GTG F +L
Sbjct: 1224 EHYKLLVEGDDLQAVISTMGVKGNGTTSNNTIEVERVLGIEAARQTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLMLASFERTADHLFEAALHGRKDPIDGVSECIIMGMPMNIGTGMFKLL 1366          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39496 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S9W9])

HSP 1 Score: 285.034 bits (728), Expect = 2.606e-78
Identity = 187/568 (32.92%), Postives = 289/568 (50.88%), Query Frame = 1
Query: 1345 IAQNLTFPERVTPFNKKFLQQLVRNGTM-YPGAKFVIRENGDRIDL------KRRPDSSDIQLSYGE---------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV---MPKPTIAKPQRLWTGKQLFSLI----IP-----------GKVNCNRTHSTHPESE--DSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKG-------HSNELNSTPGRSLLQ---TFEEKVNMILNEARDKTGSSAQKS---LSKY-----NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
             A+ LT+P+ VT +N K L+Q V NG + +PGA  V  E+G +I L      +R+  +  +    G+          V RH+ N D ++ NRQPTLH+ S+M H+V+VLP   T RL+ +    YNADFDGDEMN H PQ++ A AE   +A  N   + P+   P+  ++QD + +   MT+R    N  +   L+    ++      +  P I KP + W+GKQ+ S I    IP            K++    ++  P  +  D    K    +++ V+I +G L+ G+L K   G++   L+H           G   + +  V  ++L F G T+G+ D L      +  +  I K +    D  T         H ++L +   R+      T  +++++ + +  D    S  K+   L  Y     N+  LMV SGAKGS +N  Q+   +GQ  +EG+R P     R+LP F+  D  P + GFV+  +L G+ P E+FFH M GREG++DTAVKT+ +GY+QR L+K +E + V YD TVR+    ++Q  YGEDGLD
Sbjct:    3 FAKKLTYPQPVTTWNVKELRQAVINGPLVHPGAILVESEDGKKIRLSETDVNQRQAIAKRLLTPSGDNKGSHVNCKKVYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEKTIRLHYANCKAYNADFDGDEMNAHFPQNELARAEAYTIASTNFNYLVPKDGTPLSGLIQDHMVSGVLMTIRGRMFNKLDYQQLVYGALNFKNQPIELLMPCILKPTQFWSGKQVISTILLNLIPLGSKRLNLKGKAKISAKNWNTRKPRRQFLDLEVLKGDDMSESEVVIRDGHLLCGVLDKAHYGNTPYGLVHCCNELYGGVMSGELLSALARVFTSFLQFHGFTLGVKDILVTERADKIRRKLIAKGRVSGKDAATSAFGMPEDCHRSDLEARMQRAHHNSDGTDMKELDLCMKKKTDHYQDSINKACLPLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQIELEGRRPPIMLSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLD 570          

HSP 2 Score: 95.9005 bits (237), Expect = 1.326e-19
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 1
Query: 3406 EIRNIFY----KSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENS 3747
            + R++ Y    +S V PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PR++EI+   S N KTP++ + LL A  K ++ AKK+   L    L ++  S +++    P+ S
Sbjct:  741 KFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLL-AGKKVIKRAKKLQQKLNRVMLSQVLRSIDVWESLSPKES 858          

HSP 3 Score: 58.9214 bits (141), Expect = 2.485e-8
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 3
Query: 4182 ILETDGTCLPKVLAERY---VDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            +L+T+G  L   +A RY   ++ +   +N I  +  T+GIEAA  AI  E+ NV    G +V+ RHL L+ + MT++G + + +R GI         + SFE T   L  A    + + +K  S  +++G++   GTG F++L
Sbjct: 1099 VLKTEGVNLQ--VAFRYPNIINVDKLYTNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGIE-SSASPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGGGTGSFELL 1238          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO27435 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T993])

HSP 1 Score: 107.071 bits (266), Expect = 6.710e-24
Identity = 117/450 (26.00%), Postives = 196/450 (43.56%), Query Frame = 1
Query:  376 KPKKNGLMDPRQ-GPMDKYS--------------MCQTCSGNVSECP---GHFGHINLARPVYNIGY----KEKIIKILRSVCFKCSKLLVNVHDPKIRE-IMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL--NTIIRQGCNFVQPKFRRNGLD-YSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLN 1647
            KP+++GL   R  GP+  Y               +C  C   V+E        GHINL  P+ +I Y      KI  IL     K   ++       I+  I +  EG    + D + EE + +   + +  E++  +       I + G   +     R  LD  S + + + + +  +     +  E  KR++  +        + + PE MIL V+ V P  +RP + ++    A  DL      ++  NN +++  E      I+  ++  LQ  V +L DN      V  + S RPLKSL   LKGK GR R NL+GKR DY+AR+VI   P + L + G+P+ +A  L       PF    +++L+  G +    K V  ++  +I  K+ P   DI          +++    V+ NR PTLH++ +   + K++     +L+
Sbjct:   37 KPERDGLFCERIFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIGYILGLPSKKLDMIIYYERYVVIQPGIAQGLEGETLNKLDFLTEE-EYLNILDTLPMENQYLDDNDPNKFIAKMGAECIMDLLSRIDLDSLSFQLRHAANTETSK----QRKTEALKRLNVVESFREANKNRENLPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTE-SNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPEMRLFECGLPKDMAAEL-----YKPF---VIRKLIERGIV----KTV--KSAKKIIDKKEPVVWDIL--------ENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLH 458          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39497 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S9X0])

HSP 1 Score: 57.3806 bits (137), Expect = 2.943e-10
Identity = 24/45 (53.33%), Postives = 27/45 (60.00%), Query Frame = 1
Query:  379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYN 513
            P   GL DP  GP D+  +C TC  N   CPGHFGHI L  PVY+
Sbjct:   27 PNHGGLYDPVLGPTDRDDLCGTCGQNNFSCPGHFGHIELPLPVYH 71          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848])

HSP 1 Score: 1466.06 bits (3794), Expect = 0.000e+0
Identity = 713/1168 (61.04%), Postives = 895/1168 (76.63%), Query Frame = 1
Query:  343 GIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G  RKR   ++E CK    C       N    E ++ E+ +      G C   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+ +I+G + K++RPE MI+TVL VPP+AVRPA+VM  S +  DDLTHKL +IVK+NN++R+ E++G A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G MP+P I KP+ LWTGKQ+FSLIIPG +N  RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTVVNNWLL EGH+IGI D++ +A T  +I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L + K +N  FE+ F+FD  +   L R L E  V+++   A + + ++ E++++K DRE LR     +   ++ LPCN+ R+IWNA+  F+I+    TD+ P  +V  V+ L  +LI+V G+D +S  A  N+TLL    +RS LC K++  + RLS EA +W++GEI   F +S  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   38 GIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLIIVNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 292.352 bits (747), Expect = 4.576e-79
Identity = 178/369 (48.24%), Postives = 243/369 (65.85%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSG--VAQNLFMVGGATP-----MNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850
            +P F   + S ++LRI L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA  GTGCFD+L++  +      +P  + G  VA    M  G+ P     M+ A    +  +     + + S G G+    +GFS +  S + G   G+SP  SP
Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1565          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848])

HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0
Identity = 713/1168 (61.04%), Postives = 895/1168 (76.63%), Query Frame = 1
Query:  343 GIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813
            GI YPE T+ G+PK  GLMDPRQG +++   CQTC+GN++ECPGHFGHI LA+PV+++G+  KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G  RKR   ++E CK    C       N    E ++ E+ +      G C   QP+ RR+GL+   E K  + D  + K  L   +V E+FKRIS+E+ +I+G + K++RPE MI+TVL VPP+AVRPA+VM  S +  DDLTHKL +IVK+NN++R+ E++G A+ +I E    LQ+HVAT++DNE   LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN   LQ+LVR G + YPGAK++IR+NGDRIDL+  P  SD+ L  G  VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E  AEI  LA V ++++TPQSNRPVM IVQD+LTA  K T RD FL   E+M+LLMFL +W+G MP+P I KP+ LWTGKQ+FSLIIPG +N  RTHSTHP+ EDSGPYK IS  DT+V++ENG+LIMGILCKK+LG+S+GSL+HI  LE   D    F++NIQTVVNNWLL EGH+IGI D++ +A T  +I+  I KAK DV + I K H+NEL  TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F  MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G  VEFQ L + K +N  FE+ F+FD  +   L R L E  V+++   A + + ++ E++++K DRE LR     +   ++ LPCN+ R+IWNA+  F+I+    TD+ P  +V  V+ L  +LI+V G+D +S  A  N+TLL    +RS LC K++  + RLS EA +W++GEI   F +S  HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I   LEHTTLRK+  ++ IYYDP+P+N+VV  D++WV  YYE PDFDV +
Sbjct:   38 GIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLIIVNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204          

HSP 2 Score: 293.123 bits (749), Expect = 2.312e-79
Identity = 181/379 (47.76%), Postives = 241/379 (63.59%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892
            +P F   + S ++LRI L RK +TD+KL+++ IAEKI   F +D+ C   D+N + LVLRIR++  D+ K +E +E+ D+     +L  I++ +L ++ LQGI QISKVY+  P TD+KK++II   G+F+ ++EWILETDG  L +VL+E+ VD   TTSN I EIF   GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA  GTGCFD+L     LD  +C   M  +  N+  +  A               + + +   S G+  A+SP+  S           PSPG   SP  SP +P    Y   SPG
Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGISVAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPLSPYIPSPGGAMSPNYSPTSPA---YEPRSPG 1566          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164])

HSP 1 Score: 561.222 bits (1445), Expect = 5.846e-171
Identity = 344/952 (36.13%), Postives = 539/952 (56.62%), Query Frame = 1
Query:  364 TQDGK--PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDD---GKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKRRPDSSDIQ-LSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFER---NFR--FDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLR 3093
            +QD K  P  +G++D R G  +K   C TC  N+++C GH+G+++L  P +++GY + +I IL+ +C  CS +++   +  +  +++K+   +Y ++  L   I E+C+K      C+      ++C  GL  II +        V P         D ++E     +    + ++ L    V+ +F+RI +ED  ++  N +  +P  +I+T L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LT+PE V   N + +++LVRNG  ++PGA F+  R N  +  LK        Q L +G+IVERHM++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF + ++   ++  +           +P P I KP  LWTGKQ+FS+I+    +C    +   + +   G  + + + D+ V+I N +L+ G + K TLGS S  ++ +I+  +    +  N  + +  +   +L   G +IGI D              + KAK D+ D         I    + +L   PG S  +T E  +   L+  RD+ GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+ +  +IQ  YG DGLD   +E +  P      L F+R   N R  +   D   LS++        I   AD +   D+  E++K   +F+R
Sbjct:   43 SQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKC--GLLKIIHEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLMNPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQNRRNQIKRFLKYGNREKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRPSKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHG--------LLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEP------LEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEEIK---KFIR 974          

HSP 2 Score: 107.457 bits (267), Expect = 1.207e-22
Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T +L      D + A+ +   +E T L +++   E  + PD
Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQL--DVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1124          

HSP 3 Score: 92.8189 bits (229), Expect = 2.908e-18
Identity = 55/178 (30.90%), Postives = 99/178 (55.62%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +++ + +  +K +L++                +G  +  V+A   V+   TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++M++KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1202 QGIPEVARAVIHIDEQSGKNKYKLLV----------------EGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164])

HSP 1 Score: 559.681 bits (1441), Expect = 2.310e-170
Identity = 342/944 (36.23%), Postives = 534/944 (56.57%), Query Frame = 1
Query:  364 TQDGK--PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDD---GKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKRRPDSSDIQ-LSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFER---NFR--FDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQL 3069
            +QD K  P  +G++D R G  +K   C TC  N+++C GH+G+++L  P +++GY + +I IL+ +C  CS +++   +  +  +++K+   +Y ++  L   I E+C+K      C+      ++C  GL  II +        V P         D ++E     +    + ++ L    V+ +F+RI +ED  ++  N +  +P  +I+T L VPP+ +RP++V +  SG   DDLT KLTEI+ +N+ I++   +G  + +I+E  + LQ   A  +++E + +P+ +    +  +   QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP  +A+ LT+PE V   N + +++LVRNG  ++PGA F+  R N  +  LK        Q L +G+IVERHM++ D V+FNRQP+LHK+S+M H  +V P  TFR N  V  PYNADFDGDEMNLH+PQ++EA AE   L      ++TP++  P+++ +QD LT    +T++DTF + ++   ++  +           +P P I KP  LWTGKQ+FS+I+    +C    +   + +   G  + + + D+ V+I N +L+ G + K TLGS S  ++ +I+  +    +  N  + +  +   +L   G +IGI D              + KAK D+ D         I    + +L   PG S  +T E  +   L+  RD+ GS+  + L K NS  +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K    P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E +  +YD TVR+ +  +IQ  YG DGLD   +E +  P      L F+R   N R  +   D   LS++        I   AD +   D+  E+L
Sbjct:   43 SQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKC--GLLKIIHEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLMNPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQNRRNQIKRFLKYGNREKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRPSKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHG--------LLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEP------LEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEEL 969          

HSP 2 Score: 107.457 bits (267), Expect = 1.233e-22
Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735
            +R++   LE  +   R+ + ++Q+ PG  VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N  TP +T +L      D + A+ +   +E T L +++   E  + PD
Sbjct: 1016 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQL--DVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1136          

HSP 3 Score: 92.8189 bits (229), Expect = 3.096e-18
Identity = 55/178 (30.90%), Postives = 99/178 (55.62%), Query Frame = 3
Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601
            QGIP++++  +++ + +  +K +L++                +G  +  V+A   V+   TTSN+  E+ +T GIEAAR+ I  E+   +   G  ++ RH+ LL ++M++KG ++ I R G+ + +   L  +SFE+T D L +A    + D + GVSE I++G    +GTG F +L
Sbjct: 1214 QGIPEVARAVIHIDEQSGKNKYKLLV----------------EGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1375          
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr1a (RNA polymerase I subunit A [Source:NCBI gene;Acc:101156830])

HSP 1 Score: 327.405 bits (838), Expect = 3.312e-90
Identity = 218/641 (34.01%), Postives = 326/641 (50.86%), Query Frame = 1
Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLK----RRPDSSDIQL---SYG------EIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM-FLPSWNG---VMPKPTIAKPQRLWTGKQLFSL----IIPGK-VNCNRTHSTHPESED-------SGP-YKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLYNAATRE-----------------EIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQT----FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            LQ HV  + D++   L             ++Q L+ K G  R ++MGKR DY AR+VI  D  +  +++G+P   A  LT+P+ VTP+N K L+Q V NG  ++PGA  VI E+G +  L      + ++   QL   S G      +IV RH+ N D ++ NRQPTLH+ S+  H  ++LP     RL+ +    YNADFDGDEMN H PQS+   AE   L   N+  + P+  +P+  ++QD + +  +MT+R  F    +   L+   L    G   ++P P + KPQ LWTGKQ+ S     +IP K V  N    +   S+        + P Y+  S  D++V+I  G+L++G+L K   GSS+  L+H        +  G     +  +   +L L+ G T+G+ D L      +                 +  FN+    D   D  ++     LN  P +    T    F+E  N + N+           +    N+  LMV SGAKGS +N  Q+   +GQ  +EG+R P     + LP F   D  P + GFV   +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+    ++Q  YGEDGLD
Sbjct:  382 LQSHVNIVFDSDMDKLMT------EKYPGVRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGASMVINEDGRKTILSPTNFTQREAVAKQLLTPSLGPHKMSMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVFRGLTDKRGRVKLLP-PAVLKPQHLWTGKQVVSTLLLNVIPEKAVPLNLIGRSKIPSKAWIKLPPRAAPGYQPESMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLGCLARLFTAYLQLYRGFTLGVEDILVKPGANKRRRKIIESSRNVGSQALQAAFNLPPGVDPA-DARSRWQDAHLN--PDQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1012          

HSP 2 Score: 84.7297 bits (208), Expect = 1.055e-15
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTI 3618
            + +S   PGE VG LAA+S+GEP+TQMTLNTFHFAG    NVTLG+PRL+EI+ V S N KTP ++I
Sbjct: 1180 WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSI 1246          

HSP 3 Score: 66.6254 bits (161), Expect = 2.824e-10
Identity = 40/143 (27.97%), Postives = 75/143 (52.45%), Query Frame = 3
Query: 4173 EEWILETDGTCLPKVLAE-RYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598
            +E +L T+G  + ++      +D     SN +  +  T+GIE A   IE E+ +V +  G  V+ RHL+L+ + M  +G    ++RH I R  +  L + +FE +   L +A      D ++  S  +++G++ + GTG F++
Sbjct: 1541 KETVLNTEGINMHEMFKYGEILDLNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAI-RSNSSPLQQMTFETSYKFLKQATMLGSHDQLESPSACLVVGKVVKGGTGLFEL 1682          

HSP 4 Score: 64.3142 bits (155), Expect = 1.388e-9
Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576
            G    N L D   GP D   +C TC  + + CPGHFGHI L  PVYN  + +K+  ++R  C  C  L
Sbjct:   43 GNVAPNSLYDLALGPADLKEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHML 110          
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000078620.1 (SMESG000078620.1)

HSP 1 Score: 2393.62 bits (6202), Expect = 0.000e+0
Identity = 1138/1140 (99.82%), Postives = 1139/1140 (99.91%), Query Frame = 1
Query:  397 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816
            MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVN+HDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADIL DIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK
Sbjct:    1 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNIHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILTDIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 1140          

HSP 2 Score: 642.114 bits (1655), Expect = 0.000e+0
Identity = 366/371 (98.65%), Postives = 367/371 (98.92%), Query Frame = 3
Query: 3792 PGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904
            P F   +KSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNSASPQLSQYSPSYNYSPNSSTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL
Sbjct: 1133 PDFDVDKKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNSASPQLSQYSPSYNYSPNSSTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 1503          

HSP 3 Score: 133.265 bits (334), Expect = 1.364e-30
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3
Query: 5343 RYSATXXXXXXXXXXXXXXXXXXRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV 5606
            RYSATYNPLSPNLSSTSPSYSPNRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV
Sbjct: 1657 RYSATYNPLSPNLSSTSPSYSPNRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV 1744          
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000010459.1 (SMESG000010459.1)

HSP 1 Score: 1906.34 bits (4937), Expect = 0.000e+0
Identity = 895/1168 (76.63%), Postives = 1017/1168 (87.07%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKG-KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816
            + LSV    GIIY EKTQDGKPKK+GLMDPRQGP DKYS CQTC G+V+ECPGHFGHINLARPV++IG+KEKIIKILRSVCFKCSKLL +V+   ++EI+KKTE + RKRFD +++EC++ K C+V   + +E +     + R GC +VQP FRRNGL+Y +  KD       KQPL A+QV+E+F+RI+ EDC++MGFN KYSRPE MI+TVL+VPP+AVRPA+VMNH+GK+HDDLTHKLTE+VKVNNEIR AEENGVASTI+LEKENSLQYHVAT +DNES FLP AIQKSGRPLK+LKQRLKGKHGR+RSNLMGKRTDY+ARTVITADPNLNLDQVGVPR IAQNLTFPE+VTPFNK +LQQLV+NGTMYPGA FVIRENGDRIDLKRRPDSSDIQL YGE VERHMLNDDFVVFNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLH+PQS E  AE+++LARV KL+ITPQSN+PVMSIVQD+LTACNKMT RD FLN AE+MHLLM+LP+WNG +PKP I KP RLWTGKQ+FSLIIPG+VNC RTHSTHPE E++GPYKWIS  DT+VLIE+G+LI GILCKKTLGSS+GSL+HIIALEQ  D+ G FFNN+QTVVNNWLL EGHTIGIVD LY+A TREEIK  I++AK+ VF+TI K H+ EL STPG +L QTFE  VN ILN+ARDKTGS AQKSLSKYN+FNLMV+SGAKGSKINISQVIACVGQQNVEGKRIPFGF+QRTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD+TVRNQIDQLIQ RYGEDGLDG FVEFQ LPT+K     FE+ FRFDI + D+LSR+LTEKRV+EI  EAD +  +D EW+QL  DRE +R+ +K  TGGR+ LPCN+ RL+ N +  FKID+LKKTDIKP DI+ KV NLC +LIVV G+D IS TAN N+TLL CCLIRS LCCKKVI + RLS EA +W++GEI+  F +S V PGEMVG+LAAESLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSRNPKTPSLT+ L G AAKD E+AK IAA LEHTTLRKLAV SEIYYDP+PE+SV+E DR+WVRTYYE PDFD+DKK
Sbjct:   28 KRLSVVGENGIIYAEKTQDGKPKKDGLMDPRQGPFDKYSYCQTCGGSVAECPGHFGHINLARPVFHIGFKEKIIKILRSVCFKCSKLLADVNSSNVKEILKKTEINPRKRFDFMYDECRRNKVCSVPNSDRDEMDLKTQEMSRSGCGYVQPIFRRNGLEYFVTLKDDSSDSDSKQPLRAYQVLEIFRRITEEDCLLMGFNPKYSRPEGMIMTVLSVPPLAVRPAVVMNHTGKSHDDLTHKLTEVVKVNNEIRTAEENGVASTILLEKENSLQYHVATFIDNESPFLPTAIQKSGRPLKTLKQRLKGKHGRIRSNLMGKRTDYSARTVITADPNLNLDQVGVPRMIAQNLTFPEKVTPFNKHYLQQLVKNGTMYPGAAFVIRENGDRIDLKRRPDSSDIQLQYGETVERHMLNDDFVVFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTSPYNADFDGDEMNLHLPQSLETKAEVSDLARVTKLIITPQSNKPVMSIVQDTLTACNKMTTRDVFLNRAEVMHLLMYLPTWNGRLPKPAIYKPLRLWTGKQIFSLIIPGRVNCIRTHSTHPEPEENGPYKWISPGDTKVLIEDGELISGILCKKTLGSSAGSLIHIIALEQHPDEAGGFFNNVQTVVNNWLLIEGHTIGIVDALYDAKTREEIKQTIDRAKEAVFETIDKAHNYELQSTPGNTLRQTFETTVNKILNDARDKTGSCAQKSLSKYNNFNLMVMSGAKGSKINISQVIACVGQQNVEGKRIPFGFQQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDSTVRNQIDQLIQFRYGEDGLDGAFVEFQSLPTFKPTMAEFEKRFRFDISNEDELSRYLTEKRVREITTEADTICKLDTEWDQLCKDRELIRDIVKHETGGRVVLPCNINRLVTNGQKIFKIDLLKKTDIKPMDIIEKVENLCTDLIVVKGDDNISKTANENATLLFCCLIRSMLCCKKVIDEYRLSPEAFDWVLGEIKTRFNQSLVQPGEMVGALAAESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTVFLTGNAAKDAEMAKSIAARLEHTTLRKLAVKSEIYYDPEPESSVIEGDREWVRTYYELPDFDIDKK 1195          

HSP 2 Score: 519.235 bits (1336), Expect = 1.645e-152
Identity = 289/374 (77.27%), Postives = 323/374 (86.36%), Query Frame = 3
Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXX--XXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904
            +P F   +KS Y+LRIVL RKK+TDKKL+LQ+IAEKITEYF+NDIICH+PD+NL+LVLRIRMLKK+DEK++E  EMEDRKYLEL++NLILDEICLQGIPQISKVY+  P TDDKK+++INS G FE   EWILETDGTCL KVLAER VDSETT SNHITEIFETFGIEAARNAIE EM +VISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLA++GTGCFDILMN+ + +EAQ LPMMSGVA NL+MVGGATPMNSASPQL+ ++   +          FG +FSP   SE GMSP+P L FSPMMSPKTP DY +G  SP MNP+
Sbjct: 1187 LPDFDIDKKSPYLLRIVLTRKKMTDKKLTLQAIAEKITEYFQNDIICHIPDDNLNLVLRIRMLKKEDEKDDEKLEMEDRKYLELVENLILDEICLQGIPQISKVYIHYPKTDDKKKIVINSDGAFEGKAEWILETDGTCLQKVLAERDVDSETTISNHITEIFETFGIEAARNAIEREMHHVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLAKIGTGCFDILMNYEKCNEAQALPMMSGVAHNLYMVGGATPMNSASPQLTPWTTLSSPYTFSPKPNSFGASFSPIAHSEIGMSPNPALAFSPMMSPKTPMDYGFGRYSPSMNPI 1560          
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000003379.1 (SMESG000003379.1)

HSP 1 Score: 1719.52 bits (4452), Expect = 0.000e+0
Identity = 828/1165 (71.07%), Postives = 975/1165 (83.69%), Query Frame = 1
Query:  325 SVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII---RQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRN-EADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807
            SV D  GIIYPEK ++G  K+NGLMD RQGP+D+YS C+TCS +VSECPGHFGHINL++PVY+IG+KEKIIK+LRSVCFKCS++L++ + P+I+ ++KKTE + + RFD+I E+ KK+K+C  +  E  E +K  +      R+GCNF+QPK++R GLDYS+  +   +    + L A+QV ++F+RISNEDC++MGF+Y++SRPESMILTVLAVPPMAVRPAI+MNHSGKAHDDLTHKLTEIVKVN +I+++E+NG AS IILEK N LQYHVATL DNESTFLP AIQKSGRPLKSLKQRLKGK GRVR+NLMGKRTD+TARTVITADPNLNLDQVGVP  IA+NLTFPE VTP N+ FLQ LV NG  YPGAK+VI+ENGDRIDLKR P++ DI LS GE VERHM+NDDFV+FNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLHMPQ+QE+ AE+A LARVN+LVITPQSN+PVMS+VQDSLTAC+KMT RD  LN AEMM+LLMFLP WN VMP+P I KPQRLWTGKQLFSLIIP  +N  RTHSTH + E++GPYKWI++ DT+V +E+GQL+ GILCKK+LGSSSGSL+H+IA+E + + IGNFFN++Q V NNWLL +GH+IGI D LYN  TR+ I+ +I  AKD+VF  I      +L   PGRSL +TFE+ VN ILNE RDKTG+ AQKSLSKYNSFN MV+SGAKGSKINISQVIACVGQQNVEGKRIPF FK RTLPHF+K+D+G ES+GFVENSYLAGLTP+EFFFHAMGGREGIIDTAVKTAETGYIQRRL+KAMES+ V+YD TVRNQI+ + Q RYGEDGLDG FVEFQ+ PTYKINN  FE+ FRF  DD+  L +HL EKRV+EI + ++D L   D EWEQL +DR+++R+T+K+ +GGRL LPCN++RLIWNAK  FKID  K TDIKP DIV+ ++ LC+ LIVV G D+IS   N NS L  C L+RS L CK VI D+RLS  A EWI+GEI+N F K+ V PGEMVG+LAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRL+EIINVSRNPKTPSL IRLLG AAKD E+AKK+AA LEHTTLRKL +SS+IYYDPDP  SV+  DRDWVRTYYE  D D+
Sbjct:   31 SVLDPEGIIYPEKAENGIAKRNGLMDARQGPVDRYSYCETCSSSVSECPGHFGHINLSKPVYHIGFKEKIIKVLRSVCFKCSRILIDKNRPEIKILLKKTEFNLKARFDMIVEQSKKIKSC--VSAEMMETDKEQSLSDENRREGCNFLQPKYKRKGLDYSVTIQGEHNDVTTKVLQAYQVFDIFQRISNEDCLLMGFDYRFSRPESMILTVLAVPPMAVRPAIIMNHSGKAHDDLTHKLTEIVKVNEDIKRSEQNGAASVIILEKINQLQYHVATLFDNESTFLPTAIQKSGRPLKSLKQRLKGKGGRVRANLMGKRTDFTARTVITADPNLNLDQVGVPILIAKNLTFPEIVTPINRNFLQTLVGNGCEYPGAKYVIKENGDRIDLKRHPNTKDICLSIGETVERHMINDDFVIFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTAPYNADFDGDEMNLHMPQTQESRAEVAYLARVNRLVITPQSNKPVMSVVQDSLTACDKMTRRDVLLNKAEMMNLLMFLPCWNNVMPRPAILKPQRLWTGKQLFSLIIPKGINYTRTHSTHNDDEENGPYKWITYCDTKVYVEDGQLLSGILCKKSLGSSSGSLIHVIAVEHNYEVIGNFFNDVQRVTNNWLLIQGHSIGINDCLYNPETRDLIRSSIFVAKDNVFSKIDDCQRFKLKCLPGRSLAETFEDSVNKILNEVRDKTGTIAQKSLSKYNSFNSMVMSGAKGSKINISQVIACVGQQNVEGKRIPFNFKWRTLPHFVKSDYGSESKGFVENSYLAGLTPSEFFFHAMGGREGIIDTAVKTAETGYIQRRLVKAMESIKVEYDGTVRNQIEHVYQFRYGEDGLDGAFVEFQMFPTYKINNSKFEKKFRFRYDDVTYLRKHLIEKRVKEILSYKSDALILFDKEWEQLCLDRKYIRDTIKQESGGRLPLPCNIERLIWNAKTNFKIDQTKLTDIKPLDIVDGIKKLCDSLIVVKGEDKISKETNENSKLYFCILLRSTLSCKVVIDDHRLSSAAFEWIVGEIQNNFSKALVPPGEMVGALAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVSRNPKTPSLNIRLLGKAAKDAELAKKVAARLEHTTLRKLTLSSKIYYDPDPMESVIPEDRDWVRTYYELADEDI 1193          

HSP 2 Score: 387.882 bits (995), Expect = 4.960e-109
Identity = 218/352 (61.93%), Postives = 264/352 (75.00%), Query Frame = 3
Query: 3822 YVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXX--XXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGL-AFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDY 4868
            YVLRI   RKK+ DKK+SL++IAEKI+E+FKNDI CHV D+NL+LVLRIRMLKK D +++E +      + +L  ++NLILDE+ LQGIPQI+KVYLS+PTT DK + ++N +G FE  +EWILETDG+CL KVLAER VD   TTSNHITEIF T GIEAARNAIE EM NV+SFDGSYVNYRHL LLC++MT KG+LMS+DRHGINRQETG LARS+FEETVDIL+EAGAHA+ DPMKGVSES++ GQLA+MGTGCFDIL+N   L+EAQ LP+M G+  +    G  +P        S     YN      + +G  AFSP+   E  MSP    G SP  SPKTP+ Y
Sbjct: 1199 YVLRIDFNRKKVIDKKMSLETIAEKISEHFKNDITCHVSDDNLELVLRIRMLKKQDNEKDESEVETIDDKSFLMKLENLILDEVTLQGIPQITKVYLSEPTTGDKLKRVVNKEGSFEIEKEWILETDGSCLQKVLAERDVDPVNTTSNHITEIFTTLGIEAARNAIEYEMNNVLSFDGSYVNYRHLGLLCDVMTQKGYLMSMDRHGINRQETGVLARSTFEETVDILLEAGAHADIDPMKGVSESVLFGQLAKMGTGCFDILINSDLLNEAQSLPVMQGIGNSFMPSGCFSP--------SSPQYQYNPMSAPFSPYGCSAFSPTNSCE--MSP----GRSPYSSPKTPNFY 1536          
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000069361.1 (SMESG000069361.1)

HSP 1 Score: 446.817 bits (1148), Expect = 5.313e-131
Identity = 300/905 (33.15%), Postives = 473/905 (52.27%), Query Frame = 1
Query:  373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHD----------PKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII-----RQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGF-NYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGA-----------------KFVIRENGD----RIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESE-------DSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNF-----FNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSN-ELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIP-FGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLP 2913
             KP +NGLMD R G     + C TC      C GHFG+I+L+  ++  G+ + I+KIL+ +C  C  +L+N HD          P +  I KK+  +      +I ++  K++ C   C++S    K L ++      +      Q KF     +YS E K+  +  G   L  + V ++F+ I  +    +G  N K  +  ++I   + VPP+ +RP+   +    + +D    +T ++++     Q  +N         K + +    A ++  ++T +     K  + ++ + QRL GK GR R N+MGKRT++T+RTVI+ DP+L ++++ +P   A  LTF E  T +N   L++L+ NG   YPGA                 +  +  N +    ++D ++    +  +L  G+ V+RH+ + D V+FNRQP+LH++S     + V    TF  N     P+NADFDGDEMN+H PQ+ EA AE   L    K   +P S  P+ + +QD LTA   +T +DTF N  E  +L++ +     P+   ++P+P I KP +L++GKQL SL+I P       +    P+S         S P  +++  DT V+I N +LIMG L KK LG  S   +    L+    D+G+         +  +    L   G ++GI D   +A  R  I+  + +    + +   K + N  L S PG S+ +T E K++  L++ RD+ G   + +L K NS  +M + G+KGS INISQ++ CVGQQ +EGKR+       RTL ++ +    P S+GFV NS+ +GL P EF FHAM GREG+IDTAVKTAETGY+QRRL+K +E + +++D TVR+    L+Q +YG DG D   +E    P
Sbjct:   45 AKPAENGLMDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQKKSIRT------IIIKKSSKIRRCR-FCNDSNGSVKKLKSLSMICHKKYALKEQQKKFFEQFENYSQEIKNLLNS-GVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSRED---DITILLRM-----QIGDN---------KLHDMHSEYARMIKPDATCIRSV--KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPKKLLGGGSKLSIFFRILK----DVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRT-IQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 916          

HSP 2 Score: 92.8189 bits (229), Expect = 2.576e-18
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 3
Query: 4233 VDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMS 4649
            VD   T SNHI EI+E  GI+AA++ I  E+  V+       + RH+ LL +IM + G +    R GI++ +   L  +SFE+T+D L+EA  H + D + G+S+S+  G+   +GTG   I+ N +   + +  P +S
Sbjct: 1207 VDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLS 1345          

HSP 3 Score: 87.8113 bits (216), Expect = 8.565e-17
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEI 3720
            ++K+ + PG  +G +  +S+GEPATQMTL TFHFAGV++ N+T GVPR++EI+N   N KTP +T+ L     +    AK +   ++   L+ + + S++
Sbjct:  997 YFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 1094          
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000021710.1 (SMESG000021710.1)

HSP 1 Score: 360.147 bits (923), Expect = 3.695e-101
Identity = 280/962 (29.11%), Postives = 444/962 (46.15%), Query Frame = 1
Query:  316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL------------LVNVHDPKIR-----EIMKKTEGSYRKRFDL------IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYA---HQVVEVFKRISNEDCIIMGFN----------------YKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTI------ILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLK------SLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL--KRRP----DSSDIQLSYGE--IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVL---PFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV---------MPKPTIAKPQRLWTGKQLFSLI----IPGKVNCNRTHSTHPESED----SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHS---NELNSTPGRSLLQ--------TFEEKVNMILNEARDKTGSS---------AQKSLSKY---NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883
            R+LS  +   +I  E    GK   NGL D   G ++    C+ C+ +  +C GHFG I  ++ VYN    + + K +++VCF C +L            L  + D  I+     E MK    S +++  L        + C +    +++  +S +CE  ++   ++  +  +P  +R  +D + + +D      ++ LY    +    +F  I  E   ++  N                +KY      +  +L  PPM   PA VMN         T  +  +V+    +R+  +   ++        I E    LQ  V    D            SGR  +       L+Q++  K G  RSN+MGKR ++  R+VI+ DP + LD++GVP      LT+PE + P NK FL Q V NG  +YPGA  V  + G+R  +     P    ++   QL   +  I+ RH L+ D ++ NRQPTLH+ SM  H +K +      T R++ S    YNADFDGDEMN H PQS  A AE   L  V     TP+   P+  ++QD + A  KM +RD+     E + L+     ++G+         +PKP I  P +LWTGKQ+ S++    IP  +       + P+       SG  + +  +D  ++I +G +  GI  K  LG S   L   +      +       N+  ++  +L++ G +  I D   N +     K  +NK +     ++ K  +    E       SL++         F  K+  I  +   KT SS          + +L +    N+  LM  +GAKG + N++++   +G   +EGKR P     RTLP F + D  P SRGF  + +++GL P E FF +M GR+G++DTAVKT+ +GY+QR L+K +E + V +D TVR+ +  +IQ RYG DGLD
Sbjct:   22 RNLSTKEITSLISIEPVL-GKGAVNGLYDSSLGSLNDREPCRNCNLSFYDCNGHFGRIEFSKLVYNPLLFDTLAKFIKAVCFYCHRLNYTQGLLESICDLSQIKDSLIKRFNDYENMKSKTLSDKQKNALKIMSSQTRKNCHQCHNKSLVFKKSRKCEITVHISAKESRDKGEPSCKRMKIDENPKIRDFKSSYSQEELYGKFTNTDTSIFPEILREHLRLLWSNESENLPLILPMLKYNNFKYPTDVFFMENMLINPPMNRLPA-VMNGDQMTESPETTNMCNVVRAEAALREIIKRKDSTAAEQYYQNIREGILELQKRVNVCYD------------SGRHRELTGSQPGLRQKIDKKDGLFRSNIMGKRVNFACRSVISPDPTIGLDEIGVPIVFLSKLTYPEPLNPMNKDFLLQCVLNGPDVYPGA--VSYQIGNRFPMVIGHNPLEVVENLKFQLQNNQTVIINRHALSGDALIMNRQPTLHRPSMQAHIIKAIHDPKAKTLRMHYSNCKAYNADFDGDEMNGHYPQSLLAQAEAKLLVNVCYQHSTPKDGSPLAGLIQDHIIAGTKMCLRDSTFTRNECLDLV-----YHGLHNSNQREFKLPKPAIIFPNQLWTGKQILSIVLKNSIPAGLELPNISCSEPKKNTMWRISGDEQKLKLSDVELIIIDGYICTGIFDKVHLGPSQKGLCSDLRELYGPEVALKILTNLSRLLTRYLVYTGFSTSIKDGFLNESGECARKNILNKIRSIGSTSVGKSFNVPLMEFRGEKATSLMEFAQFDKSDKFRNKMTEI--DTNFKTLSSNYIHQLVETCKNNLREKFPDNNLLLMCQTGAKGGESNVTKIAIALGAIEIEGKRCPLTVGGRTLPSFKRYDLDPVSRGFCVSRFMSGLKPQELFFESMAGRDGLVDTAVKTSTSGYLQRCLIKHLEDITVCHDGTVRDNMHNIIQFRYGYDGLD 960          

HSP 2 Score: 77.411 bits (189), Expect = 1.041e-13
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 3391 EWIIGEIRNIFYKSQVHP-GEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA 3633
            E ++ EI  +  +  + P GE VG LAA+S+GEP+TQMTLNTFH AG S  NVTLG+PRL+EI+ + S   KTPS+ + +L  
Sbjct: 1025 ENLLREIIAVKSEYSICPNGEAVGLLAAQSVGEPSTQMTLNTFHNAGQSEMNVTLGIPRLREILMLGSDKIKTPSMDVPILAC 1107          

HSP 3 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 4254 SNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQL-ARMGTGCFDILM 4604
            SN+I ++ + +GIEAA + IE E+  V       VN RHL L+ + +TH G + + +RH +    +  L R+SFE  + +++E   +   D +K  + +IM GQL + +GT   D+LM
Sbjct: 1375 SNNIIKMSKLYGIEAAMSCIENEIKTVFKSYNIDVNSRHLRLIADFLTHSGKVGAFNRHMMTNH-SSPLQRASFETALTVIIEMLTYGTVDYIKSPTSNIMFGQLVSNIGTNAMDLLM 1491          
The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
POLR2A1.043e-7760.20RNA polymerase II subunit A [Source:HGNC Symbol;Ac... [more]
POLR2A1.043e-7760.20RNA polymerase II subunit A [Source:HGNC Symbol;Ac... [more]
POLR2A0.000e+057.28RNA polymerase II subunit A [Source:HGNC Symbol;Ac... [more]
POLR3A9.630e-17236.66RNA polymerase III subunit A [Source:HGNC Symbol;A... [more]
POLR1A7.915e-9233.23RNA polymerase I subunit A [Source:HGNC Symbol;Acc... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ama-13.256e-8558.65DNA-directed RNA polymerase II subunit RPB1 [Sour... [more]
ama-13.256e-8558.65DNA-directed RNA polymerase II subunit RPB1 [Sour... [more]
rpc-14.141e-1834.08DNA-directed RNA polymerase subunit [Source:UniPr... [more]
rpoa-11.760e-9432.05DNA-directed RNA polymerase subunit [Source:UniPr... [more]
rpoa-14.459e-1036.46DNA-directed RNA polymerase subunit [Source:UniPr... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
RpII2157.255e-7959.52gene:FBgn0003277 transcript:FBtr0073542[more]
RpIIIC1603.600e-2233.39gene:FBgn0030687 transcript:FBtr0300811[more]
RpI12.379e-11732.00gene:FBgn0019938 transcript:FBtr0087511[more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
polr2a9.852e-7860.54polymerase (RNA) II (DNA directed) polypeptide A [... [more]
polr3a1.781e-17036.65polymerase (RNA) III (DNA directed) polypeptide A ... [more]
polr1a9.392e-9030.91RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GE... [more]
polr1a1.482e-8930.91RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ctdnep12.505e-1060.58CTD nuclear envelope phosphatase 1 [Source:Xenbase... [more]
ctdnep12.482e-1060.58CTD nuclear envelope phosphatase 1 [Source:Xenbase... [more]
polr3a5.791e-17538.10polymerase (RNA) III (DNA directed) polypeptide A,... [more]
polr3a9.795e-17538.10polymerase (RNA) III (DNA directed) polypeptide A,... [more]
polr3a1.311e-17438.10polymerase (RNA) III (DNA directed) polypeptide A,... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Polr2a7.420e-7860.20polymerase (RNA) II (DNA directed) polypeptide A [... [more]
Polr2a7.600e-7860.20polymerase (RNA) II (DNA directed) polypeptide A [... [more]
Polr3a2.734e-17237.31polymerase (RNA) III (DNA directed) polypeptide A ... [more]
Polr3a2.738e-10836.43polymerase (RNA) III (DNA directed) polypeptide A ... [more]
Polr1a3.566e-9132.45polymerase (RNA) I polypeptide A [Source:MGI Symbo... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P04052|RPB1_DROME7.272e-7859.52DNA-directed RNA polymerase II subunit RPB1 OS=Dro... [more]
sp|P08775|RPB1_MOUSE5.316e-7760.20DNA-directed RNA polymerase II subunit RPB1 OS=Mus... [more]
sp|P24928|RPB1_HUMAN5.008e-7760.20DNA-directed RNA polymerase II subunit RPB1 OS=Hom... [more]
sp|P11414|RPB1_CRIGR5.008e-7760.20DNA-directed RNA polymerase II subunit RPB1 OS=Cri... [more]
sp|P35074|RPB1_CAEBR5.504e-8159.33DNA-directed RNA polymerase II subunit RPB1 OS=Cae... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S6KMI66.544e-14976.63DNA-directed RNA polymerase subunit OS=Schmidtea m... [more]
A0A183AMI06.991e-8965.92DNA-directed RNA polymerase subunit OS=Echinostoma... [more]
A0A4E0RZ986.837e-8865.67DNA-directed RNA polymerase subunit OS=Fasciola he... [more]
A0A183MI575.128e-8965.95DNA-directed RNA polymerase subunit OS=Schistosoma... [more]
A0A2H1CFP76.738e-8865.78DNA-directed RNA polymerase subunit OS=Fasciola he... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
polr2a3.056e-7960.41RNA polymerase II subunit A [Source:NCBI gene;Acc:... [more]
polr2a6.206e-7960.41RNA polymerase II subunit A [Source:NCBI gene;Acc:... [more]
polr3a1.368e-14433.90polymerase (RNA) III (DNA directed) polypeptide A ... [more]
ENSAMXT00000011874.29.291e-5132.96pep primary_assembly:Astyanax_mexicanus-2.0:24:124... [more]
ENSAMXT00000011881.23.323e-1140.48pep primary_assembly:Astyanax_mexicanus-2.0:24:124... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
RPO211.108e-4948.89RNA polymerase II largest subunit B220; part of ce... [more]
RPO311.542e-17536.54RNA polymerase III largest subunit C160; part of c... [more]
RPA1901.925e-9531.59RNA polymerase I largest subunit A190 [Source:SGD;... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO399766.820e-7858.23DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO362914.508e-2133.96DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO394962.606e-7832.92DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO274356.710e-2426.00DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
EDO394972.943e-1053.33DNA-directed RNA polymerase [Source:UniProtKB/TrE... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
polr2a4.576e-7961.04RNA polymerase II subunit A [Source:NCBI gene;Acc:... [more]
polr2a2.312e-7961.04RNA polymerase II subunit A [Source:NCBI gene;Acc:... [more]
polr3a5.846e-17136.13RNA polymerase III subunit A [Source:NCBI gene;Acc... [more]
polr3a2.310e-17036.23RNA polymerase III subunit A [Source:NCBI gene;Acc... [more]
polr1a3.312e-9034.01RNA polymerase I subunit A [Source:NCBI gene;Acc:1... [more]
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BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000078620.11.364e-3099.82SMESG000078620.1[more]
SMESG000010459.11.645e-15276.63SMESG000010459.1[more]
SMESG000003379.14.960e-10971.07SMESG000003379.1[more]
SMESG000069361.15.313e-13133.15SMESG000069361.1[more]
SMESG000021710.13.695e-10129.11SMESG000021710.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023097 ID=SMED30023097|Name=DNA-directed RNA polymerase subunit|organism=Schmidtea mediterranea sexual|type=transcript|length=5923bp
AGTTATAATTACTTTATTGTCGATGACAGTACTAAAAAACAGCTGTACAA
AATTTATATTTCCTGTTCCTATTGTTTTTGATTAAGCGATTGAAAAGTCG
AATAAAATACCTTTTTTGGAGGTAAAATTAAACGGAAGTTTAAAATACAC
TATAAAGGAGATCACATACATTTTTATCACAGGTAGATTTTTTCAACATC
GTCATTTCTTCAAATGAGTCTTATCTTTTAAAACTTTTAACTGTGATTGA
CTTGAGATCTTTAGCTTATTTCAACTTCTTTCTAATTTGTTTCCAATTAA
ACTGATTTTTTTCAGAGAAGCCTTTCAGTTAGTGATGCTTGTGGAATAAT
TTATCCGGAAAAAACTCAAGATGGCAAACCTAAGAAAAATGGTTTAATGG
ATCCAAGACAGGGTCCAATGGATAAATATTCAATGTGTCAAACGTGTTCC
GGAAATGTATCTGAATGCCCGGGTCATTTTGGGCACATAAATCTAGCACG
ACCTGTCTATAATATCGGATATAAAGAAAAAATAATAAAAATTCTCAGAT
CGGTCTGTTTCAAATGTTCTAAACTTCTCGTCAACGTTCACGACCCTAAA
ATTCGAGAAATTATGAAAAAAACCGAAGGTTCATACAGAAAGCGTTTTGA
TTTAATTCACGAAGAATGTAAAAAAGTAAAAACCTGTAATGTAATCTGTG
ATGAAAGTGAAGAATGTGAAAAGGGTCTAAATACGATTATCCGACAGGGA
TGCAATTTTGTTCAACCGAAATTCCGAAGAAATGGCCTGGATTATTCAAT
GGAAACGAAAGATTCCGATGACGGTAAAGGGAAGCAACCGTTATATGCAC
ATCAAGTGGTAGAAGTATTTAAAAGAATATCAAATGAAGACTGTATAATA
ATGGGATTTAATTATAAATATTCGCGACCAGAATCAATGATCTTGACGGT
ACTTGCTGTTCCTCCAATGGCCGTTAGACCGGCTATTGTTATGAACCACA
GTGGAAAGGCTCACGATGATTTAACACATAAGCTCACCGAAATAGTCAAA
GTTAATAATGAAATCAGACAAGCAGAAGAAAATGGAGTTGCTTCAACTAT
TATATTGGAAAAAGAAAATAGTTTGCAATACCACGTGGCCACATTAATGG
ACAATGAAAGTACATTTCTTCCGGTGGCAATTCAAAAGTCCGGACGACCA
CTTAAATCCTTAAAACAACGATTGAAAGGTAAGCATGGAAGAGTCCGATC
GAATCTTATGGGCAAGCGAACTGATTACACGGCTAGAACTGTAATTACTG
CTGATCCAAATTTGAATCTCGACCAAGTTGGTGTTCCTAGAGCTATTGCT
CAAAATCTCACGTTTCCCGAACGTGTAACTCCATTTAATAAAAAATTTCT
CCAGCAACTCGTTAGAAACGGCACCATGTATCCCGGGGCAAAGTTCGTAA
TTAGGGAAAACGGTGACAGAATCGATCTCAAACGTCGACCGGATAGTTCA
GACATCCAATTATCTTACGGTGAAATAGTCGAGCGTCATATGCTGAATGA
TGATTTCGTGGTTTTCAATCGGCAACCTACTCTCCATAAAATGTCTATGA
TGGGCCATCGTGTCAAGGTGTTACCGTTTTCGACATTTCGTTTGAATCTT
TCTGTCACTGGTCCTTACAATGCCGATTTCGATGGAGACGAGATGAATTT
ACACATGCCACAATCGCAGGAAGCGACAGCTGAAATTGCTAATCTTGCTC
GAGTAAACAAGCTTGTTATTACCCCTCAAAGTAATCGACCAGTCATGAGT
ATTGTGCAAGATTCTCTAACCGCGTGTAATAAAATGACTATGCGTGACAC
GTTTCTAAATGCAGCCGAAATGATGCATTTACTGATGTTCTTACCTTCCT
GGAATGGTGTAATGCCAAAACCGACTATTGCCAAACCTCAACGTTTGTGG
ACCGGTAAACAATTGTTCTCTCTCATAATTCCCGGAAAAGTGAACTGTAA
TCGAACTCACAGTACACATCCGGAATCAGAAGATTCTGGGCCTTATAAAT
GGATATCACATGCTGACACTCGAGTTCTCATTGAAAACGGTCAATTGATA
ATGGGTATCTTGTGCAAAAAAACTCTCGGCAGCAGTTCCGGTTCACTGAT
GCATATCATAGCCTTGGAACAGTCCGCTGATGATATCGGAAACTTTTTCA
ACAATATCCAAACAGTTGTCAACAATTGGCTGCTTTTTGAAGGCCATACA
ATCGGTATTGTCGACACTTTATACAATGCTGCAACACGTGAGGAAATCAA
ATTTAACATCAACAAAGCCAAAGATGATGTTTTTGATACAATTACCAAAG
GTCACAGTAACGAATTAAATTCCACTCCTGGTCGATCATTATTGCAGACG
TTCGAAGAAAAAGTCAATATGATTCTCAATGAAGCTCGAGATAAAACCGG
TAGCTCAGCTCAAAAATCGCTTTCCAAATATAATAGTTTCAATTTGATGG
TGGTTTCTGGAGCAAAAGGCTCGAAAATCAATATTTCTCAAGTGATAGCC
TGTGTAGGGCAGCAGAACGTCGAAGGAAAGCGAATCCCATTCGGATTCAA
ACAGCGAACACTACCACATTTTATTAAAACCGATTTTGGTCCCGAGTCCA
GAGGTTTCGTTGAGAACTCATATCTAGCTGGGCTGACACCGACTGAGTTT
TTCTTTCACGCTATGGGTGGTAGAGAAGGTATCATCGACACGGCCGTCAA
AACTGCGGAAACCGGTTACATTCAACGGCGGTTGATGAAAGCCATGGAGT
CAGTGATGGTGAAATACGATGCAACTGTGAGAAATCAAATCGATCAATTG
ATTCAATTGCGTTACGGTGAGGACGGTCTCGATGGAGGGTTTGTGGAGTT
TCAAGTGTTACCGACATATAAAATCAATAACTTAAATTTCGAAAGGAATT
TCCGATTTGACATTGATGATATCGATCAATTGAGCCGTCATTTGACGGAG
AAACGAGTCCAGGAAATAAGAAACGAAGCTGACATCCTAGCAGATATTGA
TGCAGAATGGGAGCAATTGAAAATTGATCGGGAATTTCTCCGGGAAACTC
TTAAAGAATCCACCGGTGGTCGATTGGCGTTACCTTGTAATGTGCAACGA
TTAATATGGAACGCAAAAATGACATTTAAAATCGATGTGTTGAAGAAAAC
CGATATCAAACCCACAGATATTGTAAACAAAGTTAGAAATCTGTGCAATG
AATTGATTGTTGTTCCTGGAAACGATAGAATCAGTATTACAGCGAATAGG
AATTCAACGCTATTACTCTGCTGTTTGATTAGAAGTTATCTATGCTGCAA
AAAGGTCATTTGCGATAATCGTTTAAGCTTAGAAGCCCTTGAATGGATTA
TAGGTGAGATTCGAAATATATTCTACAAGTCTCAAGTTCACCCTGGAGAA
ATGGTTGGTTCCCTAGCCGCTGAAAGTCTTGGAGAACCGGCAACCCAAAT
GACACTGAACACCTTTCATTTTGCCGGTGTCTCAGCAAAGAATGTCACTC
TCGGTGTGCCTCGATTGAAAGAAATTATCAATGTCAGTCGAAACCCAAAA
ACCCCCTCGCTGACAATTCGGCTTCTCGGAGCTGCAGCTAAAGATGTTGA
AATCGCAAAGAAAATCGCCGCCAGTCTCGAGCACACAACTCTCCGTAAAT
TGGCAGTGAGTTCGGAAATCTATTACGATCCGGATCCAGAAAATTCTGTT
GTCGAAAGCGATAGAGATTGGGTGCGAACCTACTATGAGTTCCCGGATTT
CGATGTCGACAAAAAAGTCTGTATGTGTTGAGAATTGTGTTGAAGAGAAA
GAAAATCACCGATAAGAAATTGAGCTTGCAAAGTATTGCTGAGAAAATCA
CCGAATATTTCAAAAACGATATTATATGTCATGTTCCCGATGAGAACTTG
GATTTGGTGCTCCGTATCAGAATGCTGAAGAAAGACGATGAAAAGGAGGA
AGAACCGGATGAAATGGAGGACAGGAAATATTTGGAATTGATTGATAATC
TAATTTTGGATGAGATCTGTTTGCAGGGTATTCCTCAGATCTCTAAGGTT
TACCTTTCGAAACCCACTACTGACGACAAGAAGCGATTGATTATCAATAG
TAAGGGAGATTTTGAGAAAGTCGAAGAATGGATTTTAGAAACCGACGGTA
CTTGTTTACCGAAAGTGTTGGCGGAGCGTTATGTCGACAGTGAAACGACT
ACCAGCAATCATATTACGGAAATTTTCGAAACATTTGGTATTGAAGCTGC
CCGCAATGCAATTGAGGCAGAAATGACGAATGTTATTTCATTCGACGGTT
CCTATGTCAACTATCGGCACTTGGCGTTACTCTGTGAAATAATGACCCAC
AAAGGATTCCTCATGTCGATTGACAGACACGGAATAAATCGTCAGGAAAC
CGGCGCGCTTGCTAGATCGTCATTCGAAGAAACCGTTGATATATTGATGG
AAGCCGGTGCCCATGCAGAATGTGATCCAATGAAAGGGGTTTCCGAATCG
ATTATGCTCGGACAGTTGGCTAGGATGGGAACCGGTTGTTTTGATATATT
GATGAATTTTGCACAACTTGACGAGGCCCAATGTCTACCAATGATGAGCG
GGGTCGCTCAGAATCTGTTTATGGTCGGAGGAGCGACACCAATGAATTCA
GCATCACCGCAATTGTCACAATACAGTCCATCGTATAATTATTCTCCCAA
TTCCAGTACCGGATTTGGATTGGCATTTTCACCGAGCGGGTTTTCTGAAG
CCGGTATGTCACCAAGTCCCGGATTGGGTTTCAGTCCAATGATGAGTCCG
AAAACCCCACATGATTATTTCTATGGGTTAAATTCTCCTGGAATGAATCC
ACTCAGTCCTACCAGTGCCAGTCCGTTTTATTCTCCAGCATCAAGTCCAG
GATCTAGCCCATCAAGTCCTCAATTTTCGCACTCGTCTCGTAGTCCTCAT
TCTCAGGGTTATTCGCCAACATCGCCTTCTTACAGTCCGACAAGTCCTGG
ATATTCGGGCAAAAGCCCCAGTTATTCAGGCACATCTCCTTCGTATAGCC
CAACGAGCCCCGGTTACTCACCGACTAGTCCAGGATATAGCCCCACTAGC
CCAAGTTATTCACCTACTAGCCCAGGATATTCCCCTACTAGTCCCGGATA
TTCTCCCACTAGTCCAGGGTATTCCCCAACTAGTCCAGGTTATTCCCCTT
CTAGTCCTGGTTATTCCCCTTCAAGCCCCGGATATTCCCCCAATAGTCCC
GGGTATTCACCTACTAGTCCAAGCTATTCACCCACTAGTCCAAGATATTC
CGCTACTTATAACCCATTAAGCCCTAATTTATCATCAACGTCTCCATCTT
ATAGTCCTAATCGATTGGCAGCTGCATCTCCATGTTATTCTCCCAAAGCT
AATAGCTATTCTGATTTATCATATAACCCATCATCTCCGTCAATCGGCGC
ATCAAATGGTACATTGAATTCTCCAAGTATGCTATCATATTCTCCATCTG
TCAATTCTAAATCCATTGGGTATTCTCCAAATCTATCTTCTCCAGCCAAT
CGAGTTTACACGCCAACCTCACCGAATTATTCGCCATCTTCGCCGAATTA
TTCTCCAACCTCACCAAACTATTCGCCAACTTCACCGAATTATTCATCAA
TCTCACAGCGATACTCGCCGAATTATTCACCCAGTTCGCCGAATTACTCG
CCAAGCTCACCAAATTTCTCGCCAAGCTCACCAAATTACTCGCCAAGCTC
ACCGAATTATTCACCGAACTCTCCACAATCTACTGCAACAAATAGGGTGT
ATTCACCAACGTCGCCAGCATTTTCTCCAACTTCACCTGGATCTATTGGA
AAAAAACTTTAACTTAAATTGTG
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protein sequence of SMED30023097-orf-1

>SMED30023097-orf-1 ID=SMED30023097-orf-1|Name=SMED30023097-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=647bp
MLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTT
DDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITE
IFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSI
DRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLA
RMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNSASPQLSQ
YSPSYNYSPNSSTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYF
YGLNSPGMNPLSPTSASPFYSPASSPGSSPSSPQFSHSSRSPHSQGYSPT
SPSYSPTSPGYSGKSPSYSGTSPSYSPTSPGYSPTSPGYSPTSPSYSPTS
PGYSPTSPGYSPTSPGYSPTSPGYSPSSPGYSPSSPGYSPNSPGYSPTSP
SYSPTSPRYSATYNPLSPNLSSTSPSYSPNRLAAASPCYSPKANSYSDLS
YNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRVYTPTS
PNYSPSSPNYSPTSPNYSPTSPNYSSISQRYSPNYSPSSPNYSPSSPNFS
PSSPNYSPSSPNYSPNSPQSTATNRVYSPTSPAFSPTSPGSIGKKL*
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protein sequence of SMED30023097-orf-2

>SMED30023097-orf-2 ID=SMED30023097-orf-2|Name=SMED30023097-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1145bp
MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKIL
RSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVI
CDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLY
AHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN
HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATL
MDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVI
TADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKF
VIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMS
MMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANL
ARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLP
SWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPY
KWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNF
FNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTIT
KGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNL
MVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPE
SRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAM
ESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFER
NFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRE
TLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLC
NELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEW
IIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNV
TLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLR
KLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKKVCMC*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR042102RNA_pol_Rpb1_3_sf
IPR038593RNA_pol_Rpb1_7_sf
IPR038120Rpb1_funnel_sf
IPR007081RNA_pol_Rpb1_5
IPR000684RNA_pol_II_repeat_euk
IPR006592RNA_pol_N
IPR007080RNA_pol_Rpb1_1
IPR007066RNA_pol_Rpb1_3
IPR000722RNA_pol_asu
IPR007075RNA_pol_Rpb1_6
IPR007083RNA_pol_Rpb1_4
IPR007073RNA_pol_Rpb1_7
Vocabulary: biological process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006366transcription from RNA polymerase II promoter
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0016740transferase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: cellular component
TermDefinition
GO:0005665DNA-directed RNA polymerase II, core complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 209..229
NoneNo IPR availableGENE3DG3DSA:2.40.40.20coord: 279..448
e-value: 1.6E-70
score: 238.5
NoneNo IPR availableGENE3DG3DSA:3.30.1490.180coord: 322..384
e-value: 1.6E-70
score: 238.5
NoneNo IPR availableGENE3DG3DSA:1.20.120.1280coord: 199..252
e-value: 1.1E-8
score: 36.9
coord: 1..67
e-value: 5.0E-16
score: 60.8
NoneNo IPR availableGENE3DG3DSA:2.20.25.410coord: 802..835
e-value: 3.1E-8
score: 35.1
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 2..1140
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..1140
NoneNo IPR availableCDDcd02733RNAP_II_RPB1_Ncoord: 1..808
e-value: 0.0
score: 1295.58
NoneNo IPR availableSUPERFAMILYSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..1138
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 179..481
e-value: 1.2E-170
score: 582.9
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 289..452
e-value: 9.1E-69
score: 230.9
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 1097..1141
e-value: 1.3E-13
score: 51.1
IPR007075RNA polymerase Rpb1, domain 6PFAMPF04992RNA_pol_Rpb1_6coord: 828..1012
e-value: 9.9E-54
score: 182.1
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 762..1096
e-value: 2.0E-64
score: 218.8
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3DG3DSA:1.10.274.100coord: 457..618
e-value: 4.3E-49
score: 168.1
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 651..755
e-value: 1.5E-37
score: 127.9
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 457..624
e-value: 2.5E-46
score: 157.5
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 1..287
e-value: 1.7E-82
score: 277.3
IPR038593RNA polymerase Rpb1, domain 7 superfamilyGENE3DG3DSA:3.30.1360.140coord: 1097..1145
e-value: 2.0E-12
score: 49.1
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3DG3DSA:1.10.132.30coord: 619..764
e-value: 2.3E-50
score: 172.3