DNA-directed RNA polymerase subunit
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30023097 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 1.043e-77 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 1.043e-77 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR2A (RNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]) HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0 Identity = 303/529 (57.28%), Postives = 394/529 (74.48%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFL 1857 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 555
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR3A (RNA polymerase III subunit A [Source:HGNC Symbol;Acc:HGNC:30074]) HSP 1 Score: 563.918 bits (1452), Expect = 9.630e-172 Identity = 323/881 (36.66%), Postives = 512/881 (58.12%), Query Frame = 1 Query: 349 IYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCN----------------VICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 +Y + Q P G++D R G +K C+TC N+++C GH+G+I+L P +++GY +I IL+ +C C ++++ + K + +K+ +Y ++ L I ++C+K C+ +I ++ + +K ++ I+ NF+Q ++++ E + G+ ++ L V+ +FKRI ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N FL++LV+NG ++PGA F+ + + + + + +L YG+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + A+ ++ + +P PTI KP LWTGKQ+FS+I+ P N R + + G + + D+ V I+N +L+ G + K TLGS S ++ +I+ + ++ + + + + +L G +IGI D + +N + I ++ +L PG + +T E + L+ RD GS+ + L K NS M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 41 LYSQDNQHA-PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVS---NFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913 HSP 2 Score: 102.064 bits (253), Expect = 9.578e-21 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ +E + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+ TP +T +L D + A+ + +E T L +++ E + PD Sbjct: 1004 DRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--DKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPD 1124 HSP 3 Score: 94.7449 bits (234), Expect = 1.693e-18 Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++S+ +++ + + +K +L++ +G L V+A V TTSN+ E+ +T GIEAAR I E+ + G ++ RH+ LL ++MT+KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1202 QGIPEVSRAVIHIDEQSGKEKYKLLV----------------EGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Match: POLR1A (RNA polymerase I subunit A [Source:HGNC Symbol;Acc:HGNC:17264]) HSP 1 Score: 333.569 bits (854), Expect = 7.915e-92 Identity = 214/644 (33.23%), Postives = 318/644 (49.38%), Query Frame = 1 Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDR-----IDLKRR---------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSL----IIP---------GKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLYNA-------------------ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 LQ HV + D+E L + ++Q L+ K G R ++MGKR DY AR+VI D +N +++G+P A LT+P+ VTP+N + L+Q V NG ++PGA VI E+G R +D+ +R P + + +IV RH+ N D ++ NRQPTLH+ S+ HR ++LP RL+ + YNADFDGDEMN H PQS+ AE LA ++ + P+ +P+ ++QD + + MT R F M L+ + G+ K P+I KP LWTGKQ+ S IIP GK + S +++V+I G+L+ G+L K GSS+ L+H + G + + +L L+ G T+G+ D L A R + + D+V H + + + F+E+VN NE NS +MV SGAKGS +N Q+ +GQ +EG+R P ++LP F +F P + GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+ ++Q YGEDGLD Sbjct: 394 LQSHVNIVFDSEMDKLMMD------KYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELV-----YRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGK-DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025 HSP 2 Score: 86.6557 bits (213), Expect = 5.402e-16 Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 3376 SLEALEWIIGEIRNI----FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA--AAKDVEIAKK 3663 S E E + +R + + +S PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ V S N KTP +++ +L A K V+ KK Sbjct: 1181 SYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKK 1283 HSP 3 Score: 80.1073 bits (196), Expect = 4.275e-14 Identity = 51/168 (30.36%), Postives = 88/168 (52.38%), Query Frame = 3 Query: 4098 VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598 +Y +K T R ++N + + +E +L T+G LP++ +D SN I I T+GIEAA IE E+ +V + G V+ RHL+L+ + M +G ++R GI R + L + +FE + L +A D ++ S +++G++ R GTG F++ Sbjct: 1553 IYATKGIT----RCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFEL 1715 HSP 4 Score: 57.7658 bits (138), Expect = 2.970e-7 Identity = 29/68 (42.65%), Postives = 34/68 (50.00%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G P NGL D GP D +C TC + S C GH GHI L VYN +K+ +LR C C L Sbjct: 43 GNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: ama-1 (DNA-directed RNA polymerase II subunit RPB1 [Source:UniProtKB/Swiss-Prot;Acc:P16356]) HSP 1 Score: 1435.24 bits (3714), Expect = 0.000e+0 Identity = 685/1168 (58.65%), Postives = 885/1168 (75.77%), Query Frame = 1 Query: 352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTI----------IRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 +PE ++GKPK GLMDPRQG +D+ C TC+GN+++CPGHFGH+ LA+PV++IG+ K +KILR VCF C +LL++ P++ EI+KKT + +KR +I++ CK +C+ + E E+G+ + GC QP +RR G+D + E K + D + K L A +V+EVF++I++ED +++G + +++RPE MI TVL VPP+AVRPA+V S K DDLTHKL++I+K N ++++ E NG A+ ++ + LQ+HVATL+DN LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN LQ+LV G T YPGAK++IRENG R+DL+ P ++D+ L G VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E AEI +A V + +ITPQ+N+PVM IVQD+L A MT RD F++ MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN RTHSTHP+SEDSGPYKWIS DT+V+IE+G+L+ GI+C KT+G S+G+L+H++ LE + NF+++IQTV+N WL+ EGHTIGI DT+ + AT +I+ I KAK DV D I K H+++L TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN FER+FR D+ D L ++ +E V+EI+ D ++ +++EW QL+ DR LR+ ++ LPCN+QRLIWNA+ FK+D+ K ++ P +++ VR L +LI+V GND IS A N+TLL+ L+RS LC K + ++L+ EA +W++GEI + F ++ PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ KTPSLT+ L GAAAKD E AK + LEHTTL+K+ ++ IYYDPDP+N+V+ D +WV +YE PD D+ + Sbjct: 38 FPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCK----AKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR 1200 HSP 2 Score: 311.612 bits (797), Expect = 3.256e-85 Identity = 195/395 (49.37%), Postives = 250/395 (63.29%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXX--XXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG------ATPMNXXXXXXXXXXXXXXXXXXXXTGF---------GLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895 +P + S ++LRI L RK++ DKKL+++ IA++I F ND+ D+N + LV R+R+ +D +EE+ D+MED +L I+ +L ++ LQGIP ISKVY+++P TDDKKR+II +G F+ V +WILETDGT L +VL+ER +D TTSN I EIFE GIEA R AIE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA HAE DP+KGVSE+IMLGQLAR GTGCFD++ LD +C M + QN+ M GG +P N S + + G FSP+G ++ G SP G+SP +SP+TP YG SPG+ Sbjct: 1193 MPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV-----LDVEKCKYGME-IPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS---YGGMSPGV 1578
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: ama-1 (DNA-directed RNA polymerase II subunit RPB1 [Source:UniProtKB/Swiss-Prot;Acc:P16356]) HSP 1 Score: 1435.24 bits (3714), Expect = 0.000e+0 Identity = 685/1168 (58.65%), Postives = 885/1168 (75.77%), Query Frame = 1 Query: 352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTI----------IRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 +PE ++GKPK GLMDPRQG +D+ C TC+GN+++CPGHFGH+ LA+PV++IG+ K +KILR VCF C +LL++ P++ EI+KKT + +KR +I++ CK +C+ + E E+G+ + GC QP +RR G+D + E K + D + K L A +V+EVF++I++ED +++G + +++RPE MI TVL VPP+AVRPA+V S K DDLTHKL++I+K N ++++ E NG A+ ++ + LQ+HVATL+DN LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN LQ+LV G T YPGAK++IRENG R+DL+ P ++D+ L G VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E AEI +A V + +ITPQ+N+PVM IVQD+L A MT RD F++ MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN RTHSTHP+SEDSGPYKWIS DT+V+IE+G+L+ GI+C KT+G S+G+L+H++ LE + NF+++IQTV+N WL+ EGHTIGI DT+ + AT +I+ I KAK DV D I K H+++L TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN FER+FR D+ D L ++ +E V+EI+ D ++ +++EW QL+ DR LR+ ++ LPCN+QRLIWNA+ FK+D+ K ++ P +++ VR L +LI+V GND IS A N+TLL+ L+RS LC K + ++L+ EA +W++GEI + F ++ PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ KTPSLT+ L GAAAKD E AK + LEHTTL+K+ ++ IYYDPDP+N+V+ D +WV +YE PD D+ + Sbjct: 38 FPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCK----AKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR 1200 HSP 2 Score: 311.612 bits (797), Expect = 3.256e-85 Identity = 195/395 (49.37%), Postives = 250/395 (63.29%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXX--XXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG------ATPMNXXXXXXXXXXXXXXXXXXXXTGF---------GLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895 +P + S ++LRI L RK++ DKKL+++ IA++I F ND+ D+N + LV R+R+ +D +EE+ D+MED +L I+ +L ++ LQGIP ISKVY+++P TDDKKR+II +G F+ V +WILETDGT L +VL+ER +D TTSN I EIFE GIEA R AIE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA HAE DP+KGVSE+IMLGQLAR GTGCFD++ LD +C M + QN+ M GG +P N S + + G FSP+G ++ G SP G+SP +SP+TP YG SPG+ Sbjct: 1193 MPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLV-----LDVEKCKYGME-IPQNVVMGGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRTPS---YGGMSPGV 1578
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpc-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q18566]) HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0 Identity = 409/1200 (34.08%), Postives = 633/1200 (52.75%), Query Frame = 1 Query: 286 FVSN*TDFFQRSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKI--REIMKKT-EGSYRKRF-DLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQP-KFRRNGLDYSMETKDSDDGKGKQ--------PLYAHQVVEVFKRISNEDC-IIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKR-RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV------MPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSG-SLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGL--------DGGFVEF-QVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEW-EQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVR 3777 F +F +++ V +Y + +P G +DP+ G K C TC +++C GHFG+ +L PV++IG+ + I++L+ +C CS +L+ ++ R++M + +RK I CKK TC+ ++ +K + +++ F P G +M + + + G + PL+ V ++F I D ++M + + P ++LT + VPP+ +RP++V +G DD+T KL EI+ N+ +++ + +G S + E LQ A +++E + LP +Q R +++ QRLKGK GR R NL GKR D++ RTVI+ DPNL +DQVGVP +A LTFPE V N + ++QLV NG+ ++PGA +++ ++ G++ LK + D L G+ +ERH+ ++D V+FNRQP+LHK+S+M HR KV+P TFR N PYNADFDGDEMNLH+PQ+ EA AE + L V +ITP+S P+++ +QD +T +T +DTFL AE+ L + +P P I +P LWTGKQL LII P K + + T +G + S D+ V+I N L+ G L K LGSSS ++ +++ + D + + + +L G +IGI D + E ++ I + +L + PG + +T E + L+ RD G ++LSKYN+ M V G+KGS INISQ+IACVGQQ + G R P GF++R+LPHF + PE++GFV NS+ +GLTPTEFFFH MGGREG++DTAVKTAETGY+QRRL+K +E + YD TVR+ + +I+ +GEDGL DG V+F VL K N+ + +D +D++ + +K+ + + AD +E+ Q +I + + K G + D+K + +NL A + S L CL ++ LC +C +++ ++ PG VG++AA S+GEP+TQMTL TFHFAGV++ N+T GVPR+KEIIN + TP +T LL D +A+++ A +E TTL ++ E Y PD +V+ + +R Sbjct: 20 FAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIA--FASPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLF---VQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK-RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSK-DSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAK--NIQTTKEQPIPVDKLDEVLKAEIQKK---FKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNH-----------------------ETADLKTKESCKICKNL---------------EAYKTSLLANSCLTKTQLCSFIELCYYKVA----------------RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPY--DESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR 1151 HSP 2 Score: 92.0485 bits (227), Expect = 4.141e-18 Identity = 57/179 (31.84%), Postives = 97/179 (54.19%), Query Frame = 3 Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNF 4610 +GIP +++ + D+KK GDF + L +GT VL+ VD T N+ + + GIEAAR+ I E+ + G ++ RH+ LL ++MT++G ++ I R+G+ + + L +SFE+T+D L EA ++ D + GVSE I++G +GTG F ++ + Sbjct: 1217 KGIPSVNRCVIH---ADEKK-------GDF-----YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY 1380
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7]) HSP 1 Score: 340.887 bits (873), Expect = 1.760e-94 Identity = 233/727 (32.05%), Postives = 358/727 (49.24%), Query Frame = 1 Query: 931 ESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIR----------QAEENGVASTIILEKENSLQYHVA--TLMDNESTFLPVAIQKSGR-PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEI--------------VERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM--FLPSWNGV-MPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYK-----WI---------SHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIG-NFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNEL---------NSTPG---RSLLQTF------EEKVNMI---LNEARDKTGSSAQKS--------LSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 + + L + VPP RP I M + D T L ++++ I A+ + + + K + Q H A L + + K R + +KQ L+ K G R ++MGKR ++ R+VIT DP L++D++G+P A+ LTF E V FN ++ L+R G +PGA F + +G + L +P+ ++ + V RHM N D ++ NRQP+LHK S++GHR +VL R+N + YNADFDGDEMN H+ QS A E+ +A V + P+ P++ ++QD + + +++RD FLN + MHL++ F + +P PTI P+RLWTGKQ+ + I+ NC P G K WI +++ V+ G+L++G+L K G++ L H A E G + + +L F G T+G+ D L +K K K+ V ++ T G N++ +TP R+L T+ V M+ + + K + KS L N+ LM+ SGAKGS +N Q+ C+GQ +EGKR+ RTLP F D P + G+++ +L G+ P E FFH M GREG+IDTAVKT+ +GY+QR ++K +E + V YD+TVR+ +IQ RYGEDG+D Sbjct: 351 DGLFLERILVPPKKFRP-IRMFKGAQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRANAIFDQDLNKGDRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVK---NC--IPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAH-CAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILV-------VKDADGKRKEAVMESRTIG--NQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMD 1061 HSP 2 Score: 87.0409 bits (214), Expect = 1.400e-16 Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 Query: 3412 RNIFYK---SQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTIRLLGAAAKD 3645 R +++K S PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ S++ TPS +I ++ ++D Sbjct: 1218 RTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRD 1299 HSP 3 Score: 80.8777 bits (198), Expect = 1.027e-14 Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 4173 EEWILETDGTCLPKVLAERYV-DSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMN 4607 E IL+T G L V D + SN + I E +G+EA AI EM NV + G V+ RHL+L + MT G + +R G + L + +FE T+ L EA H E D + S +++G L R GTG FD+L++ Sbjct: 1569 EMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLD 1713 HSP 4 Score: 64.3142 bits (155), Expect = 1.042e-9 Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G P GL DP GP + + MC TC+ CPGH GHI LA PV+N + +L+ C C +L Sbjct: 46 GHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 113
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Match: rpoa-1 (DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:G5EDG7]) HSP 1 Score: 59.3066 bits (142), Expect = 4.459e-10 Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 3 Query: 4320 EMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMN 4607 EM NV + G V+ RHL+L + MT G + +R G + L + +FE T+ L EA H E D + S +++G L R GTG FD+L++ Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGSFDLLLD 96
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpII215 (gene:FBgn0003277 transcript:FBtr0073542) HSP 1 Score: 1469.14 bits (3802), Expect = 0.000e+0 Identity = 700/1176 (59.52%), Postives = 894/1176 (76.02%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQ----------GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD 3804 R +SV++ G+ + E + G+PK GLMDPRQG +D+ S CQTC+GN++ECPGHFGHI+LA+PV++IG+ K IKILR VCF CSK+LV+ H+PKI+EI+ K+ G RKR +++ CK IC+ E+ + L +Q GC QP RR GLD + E K + D + K + A +V E+ K I++E+C I+G + KY+RP+ MI+TVL VPP+AVRPA+VM + K DDLTHKL++I+K NNE+R+ E +G A+ +I E LQ+HVATL+DN+ +P A+QKSG+PLK++K RLKGK GR+R NLMGKR D++ARTVIT DPNL +DQVGVPR+IAQNLTFPE VTPFN +Q+LVR G + YPGAK+++R+NG+RIDL+ P SSD+ L G VERH+ +DD V+FNRQPTLHKMSMMGHRVKVLP+STFR+NLS T PYNADFDGDEMNLH+PQS E AE+ N+ + +ITPQ+N+PVM IVQD+LTA KMT RD F+ ++M+LLMFLP+W+ MP+P I KP+ LWTGKQ+FSLIIPG VN RTHSTHP+ ED GPYKWIS DT+V++E+G+LIMGILCKK+LG+S+GSL+HI LE D G F+ NIQTV+NNWLLFEGH+IGI DT+ + T EI+ I KAKDDV + I K H+ EL TPG +L QTFE KVN ILN+ARDKTG SA+KSL++YN+ MVVSG+KGS INISQVIACVGQQNVEGKRIP+GF++RTLPHFIK D+GPESRGFVENSYLAGLTP+EF+FHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + QLIQLRYGEDGL G VEFQ +PT K++N +FE+ F+FD + + + T+ ++E+ + ++ + +++AEW++L DR+ LR+ ++ LPCN+QR+IWN + F I+ TD+ P ++ V+ L ++V GNDRIS AN N+TLL CLIRS LC K V + RLS EA EW++GEI F ++Q +PGEMVG+LAA+SLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN+S+ PK PSLT+ L G AA+D E AK + LEHTTLRK+ ++ IYYDPDP+ +V+ D+++V YYE PDFD Sbjct: 28 RRMSVTEG-GVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKG----KTICEGGEDMD--LTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGE-SKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFD 1195 HSP 2 Score: 291.582 bits (745), Expect = 7.255e-79 Identity = 175/360 (48.61%), Postives = 238/360 (66.11%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXXX----YXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLP------MMSGVAQNLFMVGGAT-----PMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEA-GMSPS 4817 +P F + S ++LRI L RK++TDKKL+++ IAEKI F D+ C D+N D LVLRIR++ ++ K ++ DE D+ +L I+ +L ++ LQGI I KVY+ P TD KKR++I G+F+ + EW+LETDGT + KVL+ER VD T+SN I EIF+ GIEA R ++E EM V+ F G YVNYRHLALLC++MT KG LM+I RHGINRQ+TGAL R SFEETVD+LM+A AHAE DPM+GVSE+I++GQL +MGTGCFD+L++ + +P M+ G A +F+ GG+T PM + + S ++ T G +FSPS S+A GMSPS Sbjct: 1191 MPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAA--MFIGGGSTPSMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPS 1548
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpIIIC160 (gene:FBgn0030687 transcript:FBtr0300811) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 385/1153 (33.39%), Postives = 603/1153 (52.30%), Query Frame = 1 Query: 376 KPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREI-MKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDY------------SMETKDSDDGKG----KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM-FLPSWNGVM----PKPTIAKPQRLWTGKQLFSLII----PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGN-FFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDP 3732 +P G++D R G K +MC+TC ++EC GHFG+++LA PV++IG+ I IL+ +C C+ +++ D ++ E + SY + L + + KKV C + +KG + + ++ +D + +D + G + L V+++F++I D ++G + P+ +I+T + VPP +RP+++ +G DDLT K +EI+ +N+ I++ G +I E + LQ HVA +E + +P+ + + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL ++QVGVP +A+ LT+PERV P N + +++LVRNG +M+PGA +V + + + +L G++VERH+ + D V+FNRQP+LHKMS+M HR KV P TFR N PYNADFDGDEMNLH+PQ++EA AE L ++TP++ +++ QD +T +T ++ FL E M L FL + + M P P + KP+RLWTGKQ+FSL++ +V N + + + K + D+ + I N +L+ G++ K T+GS + + + L + + + + +L G + GI D + + + +N + I + L PG + +T E + L+ R++ + L NS +M +SG+KGS INISQ+IACVGQQ + GKR+P GF+ R LPHF + P +RGFV+NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K +E ++V YD TVRN +++++ D + GG D +D +S K V ++ ++ D ++ A+ Q K DR E + E+ L P A+ FK+DV RN N + + RI R + C ++ C L+ E L + I + + ++ PG VG++AA+S+GEP TQMTL TFHFAGV++ N+T GVPR+ EIIN ++ TP +T L +E A+++ A +E TTL +L+ E+ P Sbjct: 47 QPVPYGVLDRRMGISTKDAMCETCGQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNPNFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLL-----KILHDPYKGRKMDSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRN----KDLCSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMV------DTIYGG-------------------------DGLDPVSMETRNKPV-DLVHQYD---NLRAQHPQGK-DRPLNAEEMSEALETLLRTP-----EFAEARDDFKLDV---------------RNHINTV-----SKRIGQLQKRYE--------KCIDLCHQIEC---LTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAEL--ENCHSMEFARQVKARIEKTTLAELSSYVEVVCGP 1115 HSP 2 Score: 105.531 bits (262), Expect = 3.600e-22 Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 3 Query: 4158 DFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGAT 4688 D + + L +G L V+A V + T SN+I EI++T GIEAAR I +E+T V+ G V++RH+ LL MT +G ++ I RHG+ + +SFE+T D L +A + + D + GVSE I+LG A +GTG F +L Q ++ Q P+ + +L ++ T Sbjct: 1209 DARQPPTYKLCIEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQ---QHEDKQVPPIEPTICSSLNLLPSKT 1382
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Match: RpI1 (gene:FBgn0019938 transcript:FBtr0087511) HSP 1 Score: 411.764 bits (1057), Expect = 2.379e-117 Identity = 313/978 (32.00%), Postives = 479/978 (48.98%), Query Frame = 1 Query: 1030 KLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRI-----DLKRRPDSSDIQLSYGE----IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHL----LMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLI-------------------IPGK-VNCNRTH----STHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLY-------------------NAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSA--QKSLSKY--NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD---GGFVEFQVLPTYKINNLN-----FERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNI-FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLA----VSSEIYYDPD 3735 KLTE K + + E A + +LQ V L+D V + + + + LKQ ++ K G +RS++MGKR +Y ARTVIT DPN+N+D++G+P A+ L++P VT +N L+++V NG ++PGA ++ +NG + +R + + LS + IV RH+LN D ++ NRQP+LHK S+MGH+ ++L TFRL+ S YNADFDGDEMN H PQS+ A AE NL V + P+ P+ ++QD + + K+++R F N + L L L ++P PTI KP LW+GKQ+ S I I GK N +R T+PE D ++++V I NG+L++G+L K+ G+++ L+H + D V +L EG T+G+ D L N+A ++ D++ + + + + + R LL + K +L+ + S+ + ++K+ N+ LMV+SGAKGS +N Q+ +GQ +EGKR P ++LP F + P+S GF++ ++ G+ P +FFFH M GREG+IDTAVKT+ +GY+QR L+K +E + V YD TVR+ + ++Q YGEDGLD F + + N + D + + ++ RH R E + A + A E+L+ + E R S GR + +L W KK D + + K C + V + + T +K+I D AL+ I +I + KS PGE VG +AA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S N KTPS+ I + E K+ +L TL L VS+ + DP+ Sbjct: 349 KLTEEAKAAYQTLKGE---TAHEKLYTAWLALQMSVDVLLD-------VNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP-PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDL--------SESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAY---VKDSKFRVLL---DRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSKTGRRRFDEGLLKL-W-----------KKADAEDKALYRKKYARCPDPTVAVYKQDLYYGSVSERT-------------RKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMDIPIKPGQQHQAE---KLRINLNSVTLANLLEYVHVSTGLTLDPE 1273 HSP 2 Score: 78.1814 bits (191), Expect = 7.857e-14 Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 3 Query: 4131 KRLIINSKGDFEKVEEWILETDGTCLPKVLAE-RYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 KR II D ++ +L+TDG + ++ + +D SN I I T+GIEAA I E++NV G V+ RHL+L+ + MT G + R G+ + L + SFE ++ L A D + S +M+G R GTG F++L Sbjct: 1486 KRAIIYKGTD----DDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGME-HSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638 HSP 3 Score: 51.6026 bits (122), Expect = 9.508e-6 Identity = 28/78 (35.90%), Postives = 39/78 (50.00%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDK-YSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKI 603 G GL D R G + C TC + +CPGH GHI L PVYN + + + ++L C C KL + H+ +I Sbjct: 44 GHAIPGGLYDIRMGSYGRCMDPCGTCL-KLQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEI 120
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78]) HSP 1 Score: 1472.6 bits (3811), Expect = 0.000e+0 Identity = 712/1176 (60.54%), Postives = 901/1176 (76.62%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G RKR +++ CK C N E E E GC QP+ RR+GL+ E K + D + K L +V E+FKRI++E+ II+G + KY+RPE MI+TVL VPP+AVRPA+VM S + DDLTHKL +IVK+NN++++ E++G A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D +VFNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTVVNNWLL EGH+IGI D++ + AT ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ + T K ++ FE+ F+FD + L R L E V+++ A + + ++ E+E+++ DRE LR + ++ LPCN+ R+IWNA+ F+I+ TD+ P +V+ V+ L +L++V G+D++S A N+TLL +RS LC K++ + RLS EA +W++GEI F +S HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVTR 1203 HSP 2 Score: 288.115 bits (736), Expect = 9.852e-78 Identity = 174/369 (47.15%), Postives = 245/369 (66.40%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSGVA----QNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXT---GFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850 +P F + S ++LRI L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H E DPMKGVSE+IMLGQLA GTGCFD+L++ + +P + G++ +F +PM+ SP ++ ++ + + + G G+ +GFS + S + G G+SP SP Sbjct: 1196 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1564
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103]) HSP 1 Score: 560.066 bits (1442), Expect = 1.781e-170 Identity = 324/884 (36.65%), Postives = 511/884 (57.81%), Query Frame = 1 Query: 349 IYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDDG---KGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNA----ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 +Y + T KP + G++D R G +K C+TC N+++C GH+G+++L P ++IGY + I+ IL+ +C CS +L+ + + + +++ +Y ++ L I ++C+K CN ++C GL II + V P D ++E + + ++ L V+ +F+RI ++D ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LT+PE+V N + +++LVRNG ++PGA F+ + + + +KR + +L +G++VERHM++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + + ++ + +P P I KP RLWTGKQ+FSLI+ +C + + + G + + D+ V+I N +L+ G + K TLGS S ++ +I+ + + + + + + +L G +IGI D A +E + K D+ D + G L PG + +T E + L+ RD GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 41 LYSQDTSH-KPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEEKLQFLDYLRRPGLAYLQKRGLKKKISDKCRKKTVCLNCNAFNGSVKKC--GLLKIIHEKYKSTKKVVDPAVSDFLQSFDVAIEHNKEVESLLTRAQENLNPLVVLNLFRRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFSLILKPSKSCPVMANLRTKGKQYCGKGEDLCANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYEKC-DEYIDALKTGR---LQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913 HSP 2 Score: 105.916 bits (263), Expect = 3.691e-22 Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVR 3777 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP ++ L D + A+ + +E T L +++ E + PD +V+ D +R Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANL--DTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDTFILVKLSLDRIR 1138 HSP 3 Score: 93.2041 bits (230), Expect = 2.844e-18 Identity = 56/178 (31.46%), Postives = 98/178 (55.06%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++S+ +++ + + K +L++ +G + V+A V+ TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++M++KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1202 QGIPEVSRAVIHIDEQSGKQKFKLLV----------------EGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286]) HSP 1 Score: 326.25 bits (835), Expect = 9.392e-90 Identity = 234/757 (30.91%), Postives = 360/757 (47.56%), Query Frame = 1 Query: 904 GFNYKYSRPESMILTVLAVPPMAVRP-------------------------------AIVMNHSGKAHDDLTHKL---TEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMD--NESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL----KRRPDSSDIQL---SYGE------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLI-------------------IPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY----NAATREEIKFNI---NKAKDDVFDTITKGHSNELNSTPGRSLLQT-----------FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 GFN PE L +L VPP RP ++ + KA + +L +E KV EI Q+ + + +K S H+ +L++ +S + +K ++Q L+ K G R ++MGKR DY AR+VI D + +++G+P A LT+P+ VTP+N K ++Q V NG ++PGA V+ E+G R L + + ++ QL S G+ IV RH+ N D ++ NRQPTLH+ S+ H ++LP RL+ + YNADFDGDEMN H PQS+ + AE L ++ + P+ +P+ ++QD + + MT+R F + L+ + G+ K PT+ KP LWTGKQ+ S + IPGK + P Y S +++V+I G+L+MG+L K GSS+ L+H + G + + + +L L+ G T+G+ D L N ++ IK ++ +KA F+ E + L F+E+VN + N N+ +MV SGAKGS +N Q+ +GQ +EG+R P ++LP F + P S GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+ ++Q YGEDGLD Sbjct: 274 GFN-----PEVFFLELLVVPPCRYRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPKVT-EIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEK----FPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALV-----YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPG------YVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1009 HSP 2 Score: 82.4185 bits (202), Expect = 5.745e-15 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 3442 PGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL--GAAAKDVEIAKK 3663 PGE VG +AA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ V S N KTP ++I ++ A K V+ +K Sbjct: 1191 PGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRK 1267 HSP 3 Score: 69.707 bits (169), Expect = 4.442e-11 Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G NGL D GP D +C TC + S CPGHFGHI L PVYN + +K+ ++R C C L Sbjct: 43 GNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHIL 110 HSP 4 Score: 65.855 bits (159), Expect = 5.599e-10 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 4134 RLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598 R ++N + +E +L T+G + ++ +D + SN + + T+GIE A IE E+ +V + G V+ RHL+L+ + M +G ++R GI + + L + +FE + L +A D + S +++G++ + GTG FD+ Sbjct: 1525 RCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1679
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Match: polr1a (RNA polymerase I subunit A [Source:ZFIN;Acc:ZDB-GENE-030131-5286]) HSP 1 Score: 325.865 bits (834), Expect = 1.482e-89 Identity = 234/757 (30.91%), Postives = 360/757 (47.56%), Query Frame = 1 Query: 904 GFNYKYSRPESMILTVLAVPPMAVRP-------------------------------AIVMNHSGKAHDDLTHKL---TEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMD--NESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL----KRRPDSSDIQL---SYGE------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLI-------------------IPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY----NAATREEIKFNI---NKAKDDVFDTITKGHSNELNSTPGRSLLQT-----------FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 GFN PE L +L VPP RP ++ + KA + +L +E KV EI Q+ + + +K S H+ +L++ +S + +K ++Q L+ K G R ++MGKR DY AR+VI D + +++G+P A LT+P+ VTP+N K ++Q V NG ++PGA V+ E+G R L + + ++ QL S G+ IV RH+ N D ++ NRQPTLH+ S+ H ++LP RL+ + YNADFDGDEMN H PQS+ + AE L ++ + P+ +P+ ++QD + + MT+R F + L+ + G+ K PT+ KP LWTGKQ+ S + IPGK + P Y S +++V+I G+L+MG+L K GSS+ L+H + G + + + +L L+ G T+G+ D L N ++ IK ++ +KA F+ E + L F+E+VN + N N+ +MV SGAKGS +N Q+ +GQ +EG+R P ++LP F + P S GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+ ++Q YGEDGLD Sbjct: 283 GFN-----PEVFFLELLVVPPCRYRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPKVT-EIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEK----FPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLNGPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALV-----YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPG------YVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1018 HSP 2 Score: 82.4185 bits (202), Expect = 6.206e-15 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 3442 PGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL--GAAAKDVEIAKK 3663 PGE VG +AA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ V S N KTP ++I ++ A K V+ +K Sbjct: 1200 PGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIPVVMNKKALKQVKTLRK 1276 HSP 3 Score: 69.707 bits (169), Expect = 4.447e-11 Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G NGL D GP D +C TC + S CPGHFGHI L PVYN + +K+ ++R C C L Sbjct: 43 GNAAANGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHIL 110 HSP 4 Score: 65.855 bits (159), Expect = 5.605e-10 Identity = 42/156 (26.92%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 4134 RLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598 R ++N + +E +L T+G + ++ +D + SN + + T+GIE A IE E+ +V + G V+ RHL+L+ + M +G ++R GI + + L + +FE + L +A D + S +++G++ + GTG FD+ Sbjct: 1534 RCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI-QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDL 1688
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296]) HSP 1 Score: 1480.31 bits (3831), Expect = 0.000e+0 Identity = 716/1182 (60.58%), Postives = 906/1182 (76.65%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR ++E CK C DE + EKG GC QP+ RR GL+ E K + D + K L +V E+FKRI++E+C I+G + +++RPE +I+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLI+PG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ +A T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ F+FD + L R L E V+EI ++A + +++ E+E++K DRE LR + + ++ LPCN+QR+IWNA+ F I+ +D+ P +V VR L +L++V G+D +S A N+TLL +RS LC ++++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKG-----HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKEDREVLR-VIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 67.781 bits (164), Expect = 2.505e-10 Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 3 Query: 4482 TVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILM 4604 +VD+LMEA AH E DPMKGVSE+I LGQLA GTGCFD+L+ Sbjct: 1398 SVDVLMEAPAHGESDPMKGVSENIFLGQLAPAGTGCFDLLL 1438 HSP 3 Score: 55.4546 bits (132), Expect = 1.282e-6 Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML 3977 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ Sbjct: 1197 MPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: ctdnep1 (CTD nuclear envelope phosphatase 1 [Source:Xenbase;Acc:XB-GENE-5939296]) HSP 1 Score: 1476.84 bits (3822), Expect = 0.000e+0 Identity = 716/1182 (60.58%), Postives = 906/1182 (76.65%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------------NVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR ++E CK C DE + EKG GC QP+ RR GL+ E K + D + K L +V E+FKRI++E+C I+G + +++RPE +I+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLI+PG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ +A T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ F+FD + L R L E V+EI ++A + +++ E+E++K DRE LR + + ++ LPCN+QR+IWNA+ F I+ +D+ P +V VR L +L++V G+D +S A N+TLL +RS LC ++++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKG-----HGGCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKEDREVLR-VIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 67.781 bits (164), Expect = 2.482e-10 Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 3 Query: 4482 TVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILM 4604 +VD+LMEA AH E DPMKGVSE+I LGQLA GTGCFD+L+ Sbjct: 1417 SVDVLMEAPAHGESDPMKGVSENIFLGQLAPAGTGCFDLLL 1457 HSP 3 Score: 55.8398 bits (133), Expect = 1.027e-6 Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML 3977 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ Sbjct: 1197 MPDFDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725]) HSP 1 Score: 572.392 bits (1474), Expect = 5.791e-175 Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 P G++D R G +K CQTC N++EC GH+G+++L P +++GY + +I IL+ +C CS++L+N + K + +K+ +Y ++ L I ++C+K KT + C K GL II + V P D ++E +S G+ ++ L V+ + ++I ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N + +++LV+NG ++PGA F+ + + + + I +L +G+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LTA +T++DTF + A+ ++ + +P P I KP LWTGKQ+FSLI+ P N R + + G + + H D+ V I+N +L+ G L K TLGS S ++ +I+ + + + + + + +L G +IGI D + KAK D+ D I ++ +L PG S +T E + L+ RD GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 31 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 894 HSP 2 Score: 105.916 bits (263), Expect = 5.637e-22 Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T L D + A+ + +E T L +++ E + PD Sbjct: 985 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1105 HSP 3 Score: 94.3597 bits (233), Expect = 1.718e-18 Identity = 57/178 (32.02%), Postives = 98/178 (55.06%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ +++ + + +K +L++ +G L V+A V TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++MT+KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1183 QGIPEVARAVIHIDEQSGKEKYKLLV----------------EGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1344
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725]) HSP 1 Score: 572.392 bits (1474), Expect = 9.795e-175 Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 P G++D R G +K CQTC N++EC GH+G+++L P +++GY + +I IL+ +C CS++L+N + K + +K+ +Y ++ L I ++C+K KT + C K GL II + V P D ++E +S G+ ++ L V+ + ++I ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N + +++LV+NG ++PGA F+ + + + + I +L +G+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LTA +T++DTF + A+ ++ + +P P I KP LWTGKQ+FSLI+ P N R + + G + + H D+ V I+N +L+ G L K TLGS S ++ +I+ + + + + + + +L G +IGI D + KAK D+ D I ++ +L PG S +T E + L+ RD GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 49 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 912 HSP 2 Score: 105.916 bits (263), Expect = 5.920e-22 Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T L D + A+ + +E T L +++ E + PD Sbjct: 1003 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1123 HSP 3 Score: 94.3597 bits (233), Expect = 1.772e-18 Identity = 57/178 (32.02%), Postives = 98/178 (55.06%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ +++ + + +K +L++ +G L V+A V TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++MT+KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1201 QGIPEVARAVIHIDEQSGKEKYKLLV----------------EGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1362
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Source:NCBI gene;Acc:100124725]) HSP 1 Score: 571.622 bits (1472), Expect = 1.311e-174 Identity = 333/874 (38.10%), Postives = 508/874 (58.12%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK--GLNTIIRQGCN----FVQPKFRR--NGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 P G++D R G +K CQTC N++EC GH+G+++L P +++GY + +I IL+ +C CS++L+N + K + +K+ +Y ++ L I ++C+K KT + C K GL II + V P D ++E +S G+ ++ L V+ + ++I ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N + +++LV+NG ++PGA F+ + + + + I +L +G+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LTA +T++DTF + A+ ++ + +P P I KP LWTGKQ+FSLI+ P N R + + G + + H D+ V I+N +L+ G L K TLGS S ++ +I+ + + + + + + +L G +IGI D + KAK D+ D I ++ +L PG S +T E + L+ RD GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 40 PLAFGVLDHRMGTSEKDRHCQTCGKNLAECLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSRILLNAEERKQFLDFLKRPGLTYLQKRGLKKKISDKCRK-KTVCLYCGAYNGSVKKCGLLKIIHEKYKTTKKVVDPMVSHFLQSFDTAIEHNKEVESLLGRAQENLNPLIVLNLLRQIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRITGAKTQMIMEDWDFLQLQCALYINSELSGIPMNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPGANFIQQRHTQMKRFLKYGNREKIAQELRFGDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEAYVLMGTKANLVTPRNGEPLIAAIQDFLTAAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCGKGEDLCHNDSYVTIQNSELMCGSLDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVFLSNRGFSIGIGDVTPGQG--------LLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 903 HSP 2 Score: 105.531 bits (262), Expect = 6.585e-22 Identity = 53/123 (43.09%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T L D + A+ + +E T L +++ E + PD Sbjct: 994 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DIDDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1114 HSP 3 Score: 94.3597 bits (233), Expect = 1.828e-18 Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 3 Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ + K E++ L +G L V+A V TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++MT+KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1192 QGIPEVARAVIHIDEQSGK--------------EKYKLLVEGDNLRSVMATHGVKGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1353
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086]) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 7.420e-78 Identity = 180/383 (47.00%), Postives = 242/383 (63.19%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS----------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A S + + + ++GF +SP+ G PSPG SP SP +P Y SPG Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAA----GRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSP---AYEPRSPG 1568
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr2a (polymerase (RNA) II (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:98086]) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 7.600e-78 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836]) HSP 1 Score: 565.074 bits (1455), Expect = 2.734e-172 Identity = 325/871 (37.31%), Postives = 508/871 (58.32%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK-GLNTIIRQG------------CNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 P G++D R G +K C+TC N+++C GH+G+I+L P +++GY +I IL+ +C C ++++ + + + +K+ +Y ++ L I ++C+K TC+ + +K GL II + NF+Q ++++ E + G+ ++ L V+ +FKRI ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N FL++LVRNG ++PGA F+ + + + +KR + +L +G+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + A+ ++ + +P PTI KP LWTGKQ+FS+I+ P N R + + G + + D+ V I+N +L+ G + K TLGS S ++ +I+ + ++ + + + + +L G +IGI D + +N + I ++ +L PG + +T E + L+ RD GS+ + L K NS M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV NS+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 50 PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913 HSP 2 Score: 102.449 bits (254), Expect = 5.061e-21 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ +E + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+ TP +T +L D + A+ + +E T L +++ E + PD Sbjct: 1004 DRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQL--DKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPD 1124 HSP 3 Score: 93.9745 bits (232), Expect = 1.803e-18 Identity = 59/176 (33.52%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++S+ + K E++ L +G L V+A V TTSN+ E+ +T GIEAAR I E+ + G ++ RH+ LL ++MT+KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1202 QGIPEVSRAVIHIDEQSGK--------------EKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:MGI Symbol;Acc:MGI:2681836]) HSP 1 Score: 362.459 bits (929), Expect = 2.738e-108 Identity = 204/560 (36.43%), Postives = 331/560 (59.11%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK-IREIMKKTEGSYRKRFDL---IHEECKKVKTCNVICDESEECEK-GLNTIIRQG------------CNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII 1980 P G++D R G +K C+TC N+++C GH+G+I+L P +++GY +I IL+ +C C ++++ + + + +K+ +Y ++ L I ++C+K TC+ + +K GL II + NF+Q ++++ E + G+ ++ L V+ +FKRI ED ++ N + +P +ILT L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LTFPE+V N FL++LVRNG ++PGA F+ + + + + + +L +G+IVERH+++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + A+ ++ + +P PTI KP LWTGKQ+FS+I+ Sbjct: 50 PLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQS--FETAIEHNKEV-EPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPESGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPGANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVIL 605
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Match: Polr1a (polymerase (RNA) I polypeptide A [Source:MGI Symbol;Acc:MGI:1096397]) HSP 1 Score: 331.257 bits (848), Expect = 3.566e-91 Identity = 209/644 (32.45%), Postives = 324/644 (50.31%), Query Frame = 1 Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDR-----IDLKRR---------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK--------PTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWI-------------SHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLY--NA-----------------ATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 LQ HV + D+E L ++K ++Q L+ K G R ++MGKR DY AR+VI D +N +++G+P A LT+P+ VTP+N + L+Q V NG ++PGA VI E+G R +D +R P + + ++V RH+ N D ++ NRQPTLH+ S+ HR ++LP RL+ + YNADFDGDEMN H PQS+ AE LA ++ + P+ +P+ ++QD + + MT+R F + M L+ + G+ K P I KP LWTGKQ+ S ++ + + G W+ S +++V+I G+L+ G+L K GSS+ L+H + G + + +L L+ G T+G+ D L NA A + + + D++ H ++ + + F+E+VN NE N+ +MV SGAKGS +N Q+ +GQ +EG+R P ++LP F +F P + GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++++YD TVR+ ++Q YGEDGLD Sbjct: 401 LQSHVNIVFDSEMDKL--MLEK----YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELV-----YRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSK-DQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032 HSP 2 Score: 84.7297 bits (208), Expect = 1.380e-15 Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA--AAKDVEIAKK 3663 + +S PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ V S N KTP +++ + A K V+ KK Sbjct: 1207 WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFDTKKALKKVKSLKK 1290 HSP 3 Score: 78.1814 bits (191), Expect = 1.119e-13 Identity = 48/162 (29.63%), Postives = 85/162 (52.47%), Query Frame = 3 Query: 4116 TTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLA-ERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598 TT R ++N + + +E +L T+G LP++ +D SN I + T+GIEAA IE E+ +V + G V+ RHL+L+ + M +G ++R GI + + L + +FE + L +A D +K S +++G++ + GTG F++ Sbjct: 1552 TTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFEL 1712 HSP 4 Score: 62.003 bits (149), Expect = 1.001e-8 Identity = 28/68 (41.18%), Postives = 35/68 (51.47%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G P NGL D GP D +C TC + + C GH GHI+L VYN +K+ +LR C C L Sbjct: 43 GNPSANGLYDLALGPADSKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHML 110
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P04052|RPB1_DROME (DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila melanogaster OX=7227 GN=RpII215 PE=3 SV=4) HSP 1 Score: 1469.14 bits (3802), Expect = 0.000e+0 Identity = 700/1176 (59.52%), Postives = 894/1176 (76.02%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQ----------GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD 3804 R +SV++ G+ + E + G+PK GLMDPRQG +D+ S CQTC+GN++ECPGHFGHI+LA+PV++IG+ K IKILR VCF CSK+LV+ H+PKI+EI+ K+ G RKR +++ CK IC+ E+ + L +Q GC QP RR GLD + E K + D + K + A +V E+ K I++E+C I+G + KY+RP+ MI+TVL VPP+AVRPA+VM + K DDLTHKL++I+K NNE+R+ E +G A+ +I E LQ+HVATL+DN+ +P A+QKSG+PLK++K RLKGK GR+R NLMGKR D++ARTVIT DPNL +DQVGVPR+IAQNLTFPE VTPFN +Q+LVR G + YPGAK+++R+NG+RIDL+ P SSD+ L G VERH+ +DD V+FNRQPTLHKMSMMGHRVKVLP+STFR+NLS T PYNADFDGDEMNLH+PQS E AE+ N+ + +ITPQ+N+PVM IVQD+LTA KMT RD F+ ++M+LLMFLP+W+ MP+P I KP+ LWTGKQ+FSLIIPG VN RTHSTHP+ ED GPYKWIS DT+V++E+G+LIMGILCKK+LG+S+GSL+HI LE D G F+ NIQTV+NNWLLFEGH+IGI DT+ + T EI+ I KAKDDV + I K H+ EL TPG +L QTFE KVN ILN+ARDKTG SA+KSL++YN+ MVVSG+KGS INISQVIACVGQQNVEGKRIP+GF++RTLPHFIK D+GPESRGFVENSYLAGLTP+EF+FHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + QLIQLRYGEDGL G VEFQ +PT K++N +FE+ F+FD + + + T+ ++E+ + ++ + +++AEW++L DR+ LR+ ++ LPCN+QR+IWN + F I+ TD+ P ++ V+ L ++V GNDRIS AN N+TLL CLIRS LC K V + RLS EA EW++GEI F ++Q +PGEMVG+LAA+SLGEPATQMTLNTFHFAGVS+KNVTLGVPRLKEIIN+S+ PK PSLT+ L G AA+D E AK + LEHTTLRK+ ++ IYYDPDP+ +V+ D+++V YYE PDFD Sbjct: 28 RRMSVTEG-GVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKG----KTICEGGEDMD--LTKENQQPDPNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGE-SKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFD 1195 HSP 2 Score: 291.582 bits (745), Expect = 7.272e-78 Identity = 175/360 (48.61%), Postives = 238/360 (66.11%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXXX----YXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLP------MMSGVAQNLFMVGGAT-----PMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEA-GMSPS 4817 +P F + S ++LRI L RK++TDKKL+++ IAEKI F D+ C D+N D LVLRIR++ ++ K ++ DE D+ +L I+ +L ++ LQGI I KVY+ P TD KKR++I G+F+ + EW+LETDGT + KVL+ER VD T+SN I EIF+ GIEA R ++E EM V+ F G YVNYRHLALLC++MT KG LM+I RHGINRQ+TGAL R SFEETVD+LM+A AHAE DPM+GVSE+I++GQL +MGTGCFD+L++ + +P M+ G A +F+ GG+T PM + + S ++ T G +FSPS S+A GMSPS Sbjct: 1191 MPDFDPTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAA--MFIGGGSTPSMTPPMTPWANCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPS 1548
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P08775|RPB1_MOUSE (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 5.316e-77 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P24928|RPB1_HUMAN (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 5.008e-77 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P11414|RPB1_CRIGR (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=2 SV=2) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1181 (60.20%), Postives = 906/1181 (76.71%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECE--------KGLNTIIRQ----GCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ K +K+LR VCF CSKLLV+ ++PKI++I+ K++G +KR +++ CK IC+ EE + +G + ++ GC QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+C ++G +Y+RPE MI+TVL VPP++VRPA+VM S + DDLTHKL +IVK+NN++R+ E+NG A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKSLKQRLKGK GRVR NLMGKR D++ARTVIT DPNL++DQVGVPR+IA N+TF E VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +NC RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTV+NNWLL EGHTIGI D++ ++ T ++I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVVSGAKGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L T K +N FE+ FRFD + L R L E V+++ + A I +++ E+E+++ DRE LR + + ++ LPCN+ R+IWNA+ F I+ +D+ P +V V+ L +L++V G+D +S A N+TLL +RS LC +++ + RLS EA +W++GEI + F ++ HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG +A+D E AK I LEHTTLRK+ ++ IYYDP+P+++VV D++WV YYE PDFDV + Sbjct: 32 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKN----ICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLR-VIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVAR 1206 HSP 2 Score: 288.886 bits (738), Expect = 5.008e-77 Identity = 182/384 (47.40%), Postives = 239/384 (62.24%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSP----KTPHDYFYGLNSP----GMNP 4901 +P F + S ++LR+ L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHG+NRQ+TG L + SFEETVD+LMEA AH E DPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ +G A P G+ F G +PSP G SP M+P TP YG SP GM P Sbjct: 1199 MPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGLGAAGPT------------------------GMFF--------GSAPSPMGGISPAMTPWNQGATPA---YGAWSPSVGSGMTP 1541
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Match: sp|P35074|RPB1_CAEBR (DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-1 PE=3 SV=2) HSP 1 Score: 1444.87 bits (3739), Expect = 0.000e+0 Identity = 693/1168 (59.33%), Postives = 886/1168 (75.86%), Query Frame = 1 Query: 352 YPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL----------NTIIRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 +PE ++GKPK GLMDPRQG +D+ C TC+GN+++CPGHFGH+ LA+PV++IG+ K +KILR VCF C +LL++ +P++ +I+KKT G+ +KR LI++ CK +C+ + E E GL + GC QP +RR G+D + E K + D + K L A +V+EVFK+I++ED +++G + +++RPE MI TVL VPP+AVRPA+V S K DDLTHKL++I+K N ++++ E NG A+ ++ + LQYHVATL+DN LP A QK GRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNL +D VGVPR IAQNLTFPE VTPFN LQ+LV G T YPGAK++IRENG R+DL+ P ++D+ L G VERHM + D +VFNRQPTLHKMSMMGHRVK+LP+STFR+NLSVT PYNADFDGDEMNLH+PQS E AEI +A V + +ITPQ+N+PVM IVQD+L A MT RD F++ MM LLM+LP+W+G +P+P I KP+ LWTGKQ+FSLIIPG VN RTHSTHP+SEDSGPYKWIS DT+VLIE+G+L+ GI+C KT+G S+G+L+H++ALE + NF+++IQTV+N WLL EGHTIGI DT+ + +T +I+ I KAK DV D I K H+++L TPG +L QTFE KVN ILN+ARD+TGSSAQKSLS++N+F MVVSG+KGSKINISQVIACVGQQNVEGKRIPFGF+ RTLPHFIK D+GPES+GFVENSYLAGLTP+EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMV YD TVRN + Q++QLRYGEDGLDG +VE Q +PT K NN FER+FR D+ D L ++ +E V+EI+ D ++ +++EW QL+ DR LR+ ++ LPCN+QRLIWNA+ FK+D+ K ++ P ++N VR L +LI+V GND IS A N+TLL+ L+RS LC KK+ +L+ EA +W++GEI F ++ PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ KTPSLT+ L GAAAKD E AK + LEHTTL+K+ ++ IYYDPDP+N+V+ D +WV +YE PD D+ + Sbjct: 38 FPEVYENGKPKMGGLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTSGNPKKRLALIYDLCKS----KSVCEGAAEKEDGLPDDMDDPMNEGKKVPAGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQEAQDGISLVESEWSQLEEDRRLLRKIFPRGD-AKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLTR 1200 HSP 2 Score: 301.597 bits (771), Expect = 5.504e-81 Identity = 188/388 (48.45%), Postives = 248/388 (63.92%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRML---XXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGA-------TPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSP--------MMSPKTPHDYFYGLNSPGM 4895 +P + S ++LRI L RK++ DKKL+++ IA++I F D+ D+N + LV R+R+ K + +EE+ D+MED +L I+ +L ++ LQGIP ISKVY+++P TDDKKR+II +G F+ V +WILETDGT L +VL+ER +D TTSN I EIFE GIEA R +IE EM NVISFDGSYVNYRHLALLC++MT KG LM+I RHGINRQE GAL R SFEETVDILMEA HAE DP+KGVSE+IMLGQLAR GTGCFD++++ + +P + ++ G A +P +S + S +SP FSP+G + G SP G+SP +SP+TP YG SPG+ Sbjct: 1193 MPDHDLTRTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAEKLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGAGIYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNEGGWSPASPGDPLGALSPRTPA---YGGMSPGV 1577
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A1S6KMI6 (DNA-directed RNA polymerase subunit OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 1903.64 bits (4930), Expect = 0.000e+0 Identity = 895/1168 (76.63%), Postives = 1017/1168 (87.07%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKG-KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816 + LSV GIIY EKTQDGKPKK+GLMDPRQGP DKYS CQTC G+V+ECPGHFGHINLARPV++IG+KEKIIKILRSVCFKCSKLL +V+ ++EI+KKTE + RKRFD +++EC++ K C+V + +E + + R GC +VQP FRRNGL+Y + KD KQPL A+QV+E+F+RI+ EDC++MGFN KYSRPE MI+TVL+VPP+AVRPA+VMNH+GK+HDDLTHKLTE+VKVNNEIR AEENGVASTI+LEKENSLQYHVAT +DNES FLP AIQKSGRPLK+LKQRLKGKHGR+RSNLMGKRTDY+ARTVITADPNLNLDQVGVPR IAQNLTFPE+VTPFNK +LQQLV+NGTMYPGA FVIRENGDRIDLKRRPDSSDIQL YGE VERHMLNDDFVVFNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLH+PQS E AE+++LARV KL+ITPQSN+PVMSIVQD+LTACNKMT RD FLN AE+MHLLM+LP+WNG +PKP I KP RLWTGKQ+FSLIIPG+VNC RTHSTHPE E++GPYKWIS DT+VLIE+G+LI GILCKKTLGSS+GSL+HIIALEQ D+ G FFNN+QTVVNNWLL EGHTIGIVD LY+A TREEIK I++AK+ VF+TI K H+ EL STPG +L QTFE VN ILN+ARDKTGS AQKSLSKYN+FNLMV+SGAKGSKINISQVIACVGQQNVEGKRIPFGF+QRTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD+TVRNQIDQLIQ RYGEDGLDG FVEFQ LPT+K FE+ FRFDI + D+LSR+LTEKRV+EI EAD + +D EW+QL DRE +R+ +K TGGR+ LPCN+ RL+ N + FKID+LKKTDIKP DI+ KV NLC +LIVV G+D IS TAN N+TLL CCLIRS LCCKKVI + RLS EA +W++GEI+ F +S V PGEMVG+LAAESLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSRNPKTPSLT+ L G AAKD E+AK IAA LEHTTLRKLAV SEIYYDP+PE+SV+E DR+WVRTYYE PDFD+DKK Sbjct: 28 KRLSVVGENGIIYAEKTQDGKPKKDGLMDPRQGPFDKYSYCQTCGGSVAECPGHFGHINLARPVFHIGFKEKIIKILRSVCFKCSKLLADVNSSNVKEILKKTEINPRKRFDFMYDECRRNKVCSVPNSDRDEMDLKTQEMSRSGCGYVQPIFRRNGLEYFVTLKDDSSDSDSKQPLRAYQVLEIFRRITEEDCLLMGFNPKYSRPEGMIMTVLSVPPLAVRPAVVMNHTGKSHDDLTHKLTEVVKVNNEIRTAEENGVASTILLEKENSLQYHVATFIDNESPFLPTAIQKSGRPLKTLKQRLKGKHGRIRSNLMGKRTDYSARTVITADPNLNLDQVGVPRMIAQNLTFPEKVTPFNKHYLQQLVKNGTMYPGAAFVIRENGDRIDLKRRPDSSDIQLQYGETVERHMLNDDFVVFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTSPYNADFDGDEMNLHLPQSLETKAEVSDLARVTKLIITPQSNKPVMSIVQDTLTACNKMTTRDVFLNRAEVMHLLMYLPTWNGRLPKPAIYKPLRLWTGKQIFSLIIPGRVNCIRTHSTHPEPEENGPYKWISPGDTKVLIEDGELISGILCKKTLGSSAGSLIHIIALEQHPDEAGGFFNNVQTVVNNWLLIEGHTIGIVDALYDAKTREEIKQTIDRAKEAVFETIDKAHNYELQSTPGNTLRQTFETTVNKILNDARDKTGSCAQKSLSKYNNFNLMVMSGAKGSKINISQVIACVGQQNVEGKRIPFGFQQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDSTVRNQIDQLIQFRYGEDGLDGAFVEFQSLPTFKPTMAEFEKRFRFDISNEDELSRYLTEKRVREITTEADTICKLDTEWDQLCKDRELIRDIVKHETGGRVVLPCNINRLVTNGQKIFKIDLLKKTDIKPMDIIEKVENLCTDLIVVKGDDNISKTANENATLLFCCLIRSMLCCKKVIDEYRLSPEAFDWVLGEIKTRFNQSLVQPGEMVGALAAESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTVFLTGNAAKDAEMAKSIAARLEHTTLRKLAVKSEIYYDPEPESSVIEGDREWVRTYYELPDFDIDKK 1195 HSP 2 Score: 518.85 bits (1335), Expect = 6.544e-149 Identity = 289/374 (77.27%), Postives = 323/374 (86.36%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXX--XXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904 +P F +KS Y+LRIVL RKK+TDKKL+LQ+IAEKITEYF+NDIICH+PD+NL+LVLRIRMLKK+DEK++E EMEDRKYLEL++NLILDEICLQGIPQISKVY+ P TDDKK+++INS G FE EWILETDGTCL KVLAER VDSETT SNHITEIFETFGIEAARNAIE EM +VISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLA++GTGCFDILMN+ + +EAQ LPMMSGVA NL+MVGGATPMNSASPQL+ ++ + FG +FSP SE GMSP+P L FSPMMSPKTP DY +G SP MNP+ Sbjct: 1187 LPDFDIDKKSPYLLRIVLTRKKMTDKKLTLQAIAEKITEYFQNDIICHIPDDNLNLVLRIRMLKKEDEKDDEKLEMEDRKYLELVENLILDEICLQGIPQISKVYIHYPKTDDKKKIVINSDGAFEGKAEWILETDGTCLQKVLAERDVDSETTISNHITEIFETFGIEAARNAIEREMHHVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLAKIGTGCFDILMNYEKCNEAQALPMMSGVAHNLYMVGGATPMNSASPQLTPWTTLSSPYTFSPKPNSFGASFSPIAHSEIGMSPNPALAFSPMMSPKTPMDYGFGRYSPSMNPI 1560
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A183AMI0 (DNA-directed RNA polymerase subunit OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS8165 PE=3 SV=1) HSP 1 Score: 1621.68 bits (4198), Expect = 0.000e+0 Identity = 770/1168 (65.92%), Postives = 938/1168 (80.31%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL--NTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807 + +SV+ G+ Y E + G+PK GLMDPRQG +D+ S+CQTCSGNVS CPGHFGHI LA+PV++IG+ +K +K+LR VCF CSK+LV+V P I++I++KT+G R+R ++EECK C + ++S E + N R GC QP+FRR GL+ S E K + + + K L A +V+EVFKRIS+ED I +GF+ +Y+RPE MI+TVL VPP+AVRPA+VM + + DDLTHKL +I+K NN++R+ E+NG A+ I+ E+ +LQ+HV TL+DN+ LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN LQ+LV+NGT+YPGAKF++RENGDRIDL+ P +D+ L G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+WNG MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS DT+V++++G LI GILCKKTLGS +GSL+HI+ALE + + FFNNIQTVVNNWLL EGHTIGI DTLY+ ATRE+I I KAK+ VF+ I + H+ +L TPG +L QTFE VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVMVKYD TVRNQI+QLIQLRYGEDGLD VEFQ LP++K ++ FE FRFDI++ L R + E+ V+ + ++ A++DAEW QL DRE LR +++ T + LPCN+ RL+ NA+ F+ID L KT++ P +V VR C L+V+PG+DR+S AN N+TLL+C LIRS LC KKVI + RLS EAL+W++GE+R F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L G AA+D E K + A LEHTTLRKL S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV Sbjct: 28 KEMSVTSDGGVKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSTCPGHFGHIELAKPVFHIGFMKKTLKLLRCVCFHCSKILVDVDTPTIQDILRKTKGDNRRRMMFMYEECKTRSEC-LPGEDSAGNENDVMENKTKRAGCGRYQPRFRRIGLEMSAEWKKINEESQERKIALTAERVLEVFKRISDEDSIALGFDPRYARPEWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRTLQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGAGSLIHIVALEHHHEQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATREQIFATITKAKEAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPSFKPSHAAFEHGFRFDINNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADRESLRAVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTNVHPRQVVEMVRETCKRLVVIPGDDRLSKEANANATLLICSLIRSSLCAKKVINEYRLSYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLTGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDV 1193 HSP 2 Score: 335.109 bits (858), Expect = 6.991e-89 Identity = 179/303 (59.08%), Postives = 219/303 (72.28%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682 +P F S ++LRI RK +T KKLS++ IA+KIT F ND+ICH+PD+NL LV+RIR++ D E + D+MED +L I+ +L +I LQGIPQI+KVY+ P T DK R++I G F+ V EW+LETDGTCL +VLAER VD T SN I EIFE GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A HAECDPM GVSE IMLGQLAR+GTGCFD+L++ A+ EAQ +P+ + LF G Sbjct: 1188 LPDFDVTAISSWMLRIEFARKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLSGVMGMGLFNAPG 1490
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A4E0RZ98 (DNA-directed RNA polymerase subunit OS=Fasciola hepatica OX=6192 GN=D915_004697 PE=3 SV=1) HSP 1 Score: 1618.98 bits (4191), Expect = 0.000e+0 Identity = 767/1168 (65.67%), Postives = 935/1168 (80.05%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDES-EECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVD 3810 + +SV+ GI Y E + G+PK GLMDPRQG +D+ S+CQTCSGNVS CPGHFGH+ L +PV++IG+ +K +K+LR VCF CSK+LV+V P ++EI++KT+G R+R ++EECK C D++ E + N R GC QP+FRR GL+ S E K + + + K L A +V+EVFKRIS+EDCI +GF+ +Y+RP+ MI+TVL VPP+AVRPA+VM + + DDLTHKL +I+K NN++R+ E+NG A+ I+ E+ LQ+HV TL+DN+ LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN LQ+LV+NGT+YPGAKF++RENGDRIDL+ P +D+ L G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+W+G MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS DT+V++++G LI GILCKKTLGS SGSL+HI+ALE + + FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I I KAKD VF+ I + H+ +L TPG +L QTFE VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD VEFQ LPT+K ++ FE FRFD+ + L R + E+ V+ + ++ A++DAEW QL DRE LR +++ T + LPCN+ RL+ NA+ F+ID L KT + P +V VR C L+V+PG+DR+S AN N+TLL+C LIRS LC KKVI + RL+ EAL+W++GE+R F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L+G AA+D E K + A LEHTTLRKL S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV+ Sbjct: 28 KEMSVTSDGGIKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSNCPGHFGHVELTKPVFHIGFIKKTLKLLRCVCFHCSKILVDVDSPAVQEILRKTKGDNRRRMTFMYEECKTRTECLSGEDQNGSENDVMENKTRRAGCGRYQPRFRRIGLEISAEWKKINEESQERKIALTAERVLEVFKRISDEDCISLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRILQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWSGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVAMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPTFKPSHAAFEHGFRFDVGNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADREALRSVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTTVHPRQVVEMVRETCKRLVVIPGDDRLSKEANSNATLLICSLIRSSLCAKKVISEYRLNYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLIGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDVN 1194 HSP 2 Score: 332.028 bits (850), Expect = 6.837e-88 Identity = 178/303 (58.75%), Postives = 218/303 (71.95%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682 +P F S ++LRI RK +T KKLS++ IA+KIT F ND+ICH+PD+NL LV+RIR++ D E + D+MED +L I+ +L +I LQGIPQI+KVY+ P T DK R++I G F+ V EW+LETDGTCL +VLAER VD T SN I EIFE GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A HAECDPM GVSE IMLGQLAR+GTGC D+L++ A+ EAQ +P+ + LF G Sbjct: 1188 LPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCCDLLLDSARCQEAQPIPLSGVMGMGLFNAPG 1490
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A183MI57 (DNA-directed RNA polymerase subunit OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS15732 PE=3 SV=1) HSP 1 Score: 1618.98 bits (4191), Expect = 0.000e+0 Identity = 771/1169 (65.95%), Postives = 933/1169 (79.81%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLN---TIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807 + LSV+ GI Y E + GKPK GLMDPRQG +D+ S+CQTCSG+VS CPGHFGH+ LA+PV++IG+ +K +K+LR VCF CSK+LV+V +I+EI++KT+G R+R ++EECK C + D+ + E ++ + R GC QP+FRRNGL+ + E K + + + K L A +V+EVFKR+S+EDC+ +GF+ +Y+RP+ MI TVL VPP+ VRPA+VM + + DDLTHKL +I+K NN++R+ E+NG A+ II E LQ+HV T++DNE LP AIQKSGRPLKS+KQRLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN LQ+LV+NGT+YPGAKF++RENGDRIDL+ P SD+ L G IVERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN +EMM+LLM+LP+WNG MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPYKWIS DT+V++++G LI GILCKKTLGS +GSL+HI+ALE D + FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I I KAKD VF+ I + H+ +L TPG +L QTFE VN ILN+ARDKTGS AQ+SLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD VEFQ LPT+K +N FE FRFDI + L R + E V+ + ++ +++++EW QL DRE LR +K+ T + LPCN+ RL+ NA+ F+ID L KT+I P +V VR C LIVVPG+DR+S AN N+TLLL LIR+ LC KKVI D RLS EAL+W++GE+R F ++ +HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L G AA+D E K + A LEHTTLRKL S+ IYYDPDP+N+VVE DR+WV TYYE PDFDV Sbjct: 33 KELSVTADGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQTCSGSVSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRKTKGDNRRRMSFMYEECKTRSEC-ISNDDQVQSENDVSLSSKVKRSGCGRYQPRFRRNGLELTAEWKKVNEESQERKINLTAERVLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKLADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIKQRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEVVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLISGILCKKTLGSGAGSLIHIVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNERVLRRCMPEDVVRSLATDSQTQSELESEWLQLCSDREILRSVIKK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTNIHPRQVVEMVRETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVRARFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNTVVEEDREWVSTYYELPDFDV 1199 HSP 2 Score: 335.495 bits (859), Expect = 5.128e-89 Identity = 179/303 (59.08%), Postives = 221/303 (72.94%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682 +P F S ++LRI RK +T KKLS++ IA+KIT F ND+ICH+PD+NL LV+RIR++ D + + D+MED +L I+ +L +I LQGIPQI+KVY+ P T DKKR++I G F+ V EW+LETDGTCL +VLAER VD T SN I EIFE GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILMEA H+ECDPM GVSE+IMLGQLAR+GTGCFD+L++ A+ EAQ +P+ + LF G Sbjct: 1194 LPDFDVSAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLGGVLGMGLFNAPG 1496
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Match: A0A2H1CFP7 (DNA-directed RNA polymerase subunit OS=Fasciola hepatica OX=6192 GN=D915_07253 PE=3 SV=1) HSP 1 Score: 1618.59 bits (4190), Expect = 0.000e+0 Identity = 767/1166 (65.78%), Postives = 934/1166 (80.10%), Query Frame = 1 Query: 322 LSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDES-EECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVD 3810 +SV+ GI Y E + G+PK GLMDPRQG +D+ S+CQTCSGNVS CPGHFGH+ L +PV++IG+ +K +K+LR VCF CSK+LV+V P ++EI++KT+G R+R ++EECK C D++ E + N R GC QP+FRR GL+ S E K + + + K L A +V+EVFKRIS+EDCI +GF+ +Y+RP+ MI+TVL VPP+AVRPA+VM + + DDLTHKL +I+K NN++R+ E+NG A+ I+ E+ LQ+HV TL+DN+ LP AIQKSGRPLKS+K RLKGK GR+R NLMGKR D++ARTVITADPNLNLDQVGVPR IAQNLT+PE VT FN LQ+LV+NGT+YPGAKF++RENGDRIDL+ P +D+ L G +VERHMLNDDFV+FNRQPTLHKMSMM HRVKVLP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI+ LARV++LVITPQ+N+PVM IVQD+LTA NKMT RD FLN AEMM+LLM+LP+W+G MPKP I KPQRLWTGKQLFSL+IPG+VNC RTHSTHPE ED GPY+WIS DT+V++++G LI GILCKKTLGS SGSL+HI+ALE + + FFNNIQTVVNNWLL EGHTIGI DTLY+ ATR +I I KAKD VF+ I + H+ +L TPG +L QTFE VN ILN+ARDKTGS AQKSLSKYN+FN+MVV+G+KGS+INISQVIACVGQQNVEGKRIPFGF+ RTLPHFI+ D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD TVRNQI+QLIQLRYGEDGLD VEFQ LPT+K ++ FE FRFD+ + L R + E+ V+ + ++ A++DAEW QL DRE LR +++ T + LPCN+ RL+ NA+ F+ID L KT + P +V VR C L+V+PG+DR+S AN N+TLL+C LIRS LC KKVI + RL+ EAL+W++GE+R F ++Q+HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPS+TI L+G AA+D E K + A LEHTTLRKL S+ IYYDPDP+NSVVE DR+WV TYYE PDFDV+ Sbjct: 1 MSVTSDGGIKYAETLEGGRPKLGGLMDPRQGCVDRNSICQTCSGNVSNCPGHFGHVELTKPVFHIGFIKKTLKLLRCVCFHCSKILVDVDSPAVQEILRKTKGDNRRRMTFMYEECKTRTECLSGEDQNGSENDVMENKTRRAGCGRYQPRFRRIGLEISAEWKKINEESQERKIALTAERVLEVFKRISDEDCISLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGTTRNQDDLTHKLADIIKANNQLRRDEQNGAAAHILAEEIRILQFHVTTLVDNDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPETVTQFNIDHLQKLVQNGTLYPGAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDDFVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWSGRMPKPAIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVAMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQKSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGEDGLDASHVEFQKLPTFKPSHAAFEHGFRFDVGNGRALRRCMPEEVVRSLATDSQTQAELDAEWMQLCADREALRSVIRK-TDDSVVLPCNINRLVMNAQKIFEIDPLSKTTVHPRQVVEMVRETCKRLVVIPGDDRLSKEANSNATLLICSLIRSSLCAKKVISEYRLNYEALDWVLGEVRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSMTIYLIGPAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPKNSVVEEDREWVSTYYELPDFDVN 1165 HSP 2 Score: 332.028 bits (850), Expect = 6.738e-88 Identity = 178/303 (58.75%), Postives = 218/303 (71.95%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXX-----XXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGG 4682 +P F S ++LRI RK +T KKLS++ IA+KIT F ND+ICH+PD+NL LV+RIR++ D E + D+MED +L I+ +L +I LQGIPQI+KVY+ P T DK R++I G F+ V EW+LETDGTCL +VLAER VD T SN I EIFE GIEA R AIE EM +VISFDGSYVNYRHLALLC+IMT KG LM+I RHG+NR +TGALAR SFEETVDILM+A HAECDPM GVSE IMLGQLAR+GTGC D+L++ A+ EAQ +P+ + LF G Sbjct: 1159 LPDFDVNAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDNLKLVMRIRIMNSDLEKDFKEADTTSDKMEDDTFLRFIEANLLSDITLQGIPQITKVYMHFPKTRDKMRVVIKDDGSFDAVAEWMLETDGTCLMRVLAERDVDPTRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSERIMLGQLARIGTGCCDLLLDSARCQEAQPIPLSGVMGMGLFNAPG 1461
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187]) HSP 1 Score: 1466.83 bits (3796), Expect = 0.000e+0 Identity = 711/1177 (60.41%), Postives = 901/1177 (76.55%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G RKR +++ CK C N E E ++ L G C QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+ +I+G + KY+RPE MI+TVL VPP+AVRPA+VM S + DDLTHKL +IVK+NN++R+ E++G A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTVVNNWLL EGH+IGI D++ +A T +I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MES+MVKYDATVRN I+Q++QLRYGEDGL G VEFQ + T K +N FE+ F+F+ + L R L E ++++ A + + ++ E+E+++ DRE LR + ++ LPCN+ R+IWNA+ F+I+ TD+ P +V V+ L +L++V G+D +S A +N+TLL +RS LC +++ + RLS EA EW++GEI F +S HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPENDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIHKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVIVNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 292.738 bits (748), Expect = 3.056e-79 Identity = 181/379 (47.76%), Postives = 241/379 (63.59%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892 +P F + S ++LRI L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ + A + + + S G+ A+SP+ S PSPG SP SP +P Y SPG Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGISVAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPA---YEPRSPG 1566
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:103029187]) HSP 1 Score: 1466.44 bits (3795), Expect = 0.000e+0 Identity = 711/1177 (60.41%), Postives = 901/1177 (76.55%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV++ GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G RKR +++ CK C N E E ++ L G C QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+ +I+G + KY+RPE MI+TVL VPP+AVRPA+VM S + DDLTHKL +IVK+NN++R+ E++G A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G +P+P I KP+ LWTGKQ+FSLIIPG +N RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTVVNNWLL EGH+IGI D++ +A T +I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MES+MVKYDATVRN I+Q++QLRYGEDGL G VEFQ + T K +N FE+ F+F+ + L R L E ++++ A + + ++ E+E+++ DRE LR + ++ LPCN+ R+IWNA+ F+I+ TD+ P +V V+ L +L++V G+D +S A +N+TLL +RS LC +++ + RLS EA EW++GEI F +S HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 30 KRMSVTEG-GIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPENDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIHKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESIMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNMATLKPSNKAFEKKFKFEYTNERALRRTLQEDVLKDVMTNAHVQSSLEREFEKMREDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVIVNGDDPLSKQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAFEWLLGEIEAKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 291.967 bits (746), Expect = 6.206e-79 Identity = 175/369 (47.43%), Postives = 246/369 (66.67%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSGVA----QNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXT---GFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850 +P F + S ++LRI L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA GTGCFD+L++ + +P + G++ +F +PM+ SP ++ ++ + + + G G+ +GFS + S + G G+SP SP Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1565
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: polr3a (polymerase (RNA) III (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-050208-103]) HSP 1 Score: 486.108 bits (1250), Expect = 1.368e-144 Identity = 298/879 (33.90%), Postives = 491/879 (55.86%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHD-PKIREIMKKTEGSYRKRFDL---IHEECKK-------------VKTCN---VICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETK---DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKR-----RPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAA---TREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVE 2898 P G++D R G +K C+TC N+++C GH+G+++L P ++IGY + I IL+ +C CS+++++ + + + +++ +Y ++ L I ++C+K VK C +I ++ + +K ++ I+ +F+Q D ++E +S + ++ L V+ +F+RI NED ++ N + +P +ILT L VPP+ +RP++ DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LT+PE+V N + +++LV+NG ++PGA F+ + + + +KR + +L G++VERHM++ D V+FNRQP+LHK+S+M H V P+ + + +AT ANL +TP++ P+++ +QD LT +T++DTF + A+ ++ + +P+P I KP RLWTGKQ+FSLI+ +C + + + G + + D+ V+I+N +L+ G L K TLGS S ++ +I+ + + N + + + +L G +IGI D ++E+ K D+ + + G +L PG + +T E + L+ RD GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ +IQ YG DGLD +E Sbjct: 50 PLSYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKATIGILQMICKTCSRIMLSKEERQQFLDYLRRPGLAYLQKRGLKKKISDKCRKKNVCLYCSAFNGPVKKCGLLKIIHEKYKTTKKVVDPIVS---DFLQ------SFDIAIEHNKEVESLLSRAQENLNPLVVLNLFRRIPNEDVPLLLMNPEAGKPADLILTRLLVPPLCIRPSV---------DDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVKNGPDVHPGANFIQQRH---MQMKRFLKYGNREKMAQELKLGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIVSSNPY-------------------------IQNNPKATK--ANL-------VTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIVASILVGKDEKIKVTLPRPAIIKPMRLWTGKQIFSLILKPSQSCPVKANLRTKGKQYCGKGEDLCSNDSFVVIQNSELLCGSLDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKQELLDAGYKKCDEYIEALNTG---KLQQQPGCTAEETLEALILRELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 869 HSP 2 Score: 105.145 bits (261), Expect = 5.151e-22 Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T L D + A+ + +E T L +++ + + PD Sbjct: 960 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHL--DTEDDADFARLVKGRIEKTLLGEISEYIDEVFLPD 1080 HSP 3 Score: 92.4337 bits (228), Expect = 4.013e-18 Identity = 57/176 (32.39%), Postives = 95/176 (53.98%), Query Frame = 3 Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ + DD+ +++ L +G L V+A V+ TTSN+ E+ +T GIEAAR I E+ + G ++ RH+ LL ++M++KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1158 QGIPEVARAVIH---IDDQ-----------SGRQKFKLLVEGDNLRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1319
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011874.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12476100:12482137:1 gene:ENSAMXG00000011553.2 transcript:ENSAMXT00000011874.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 190.274 bits (482), Expect = 9.291e-51 Identity = 147/446 (32.96%), Postives = 212/446 (47.53%), Query Frame = 1 Query: 2401 FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACV-GQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFE--RNFRFDIDDIDQLSRHLTEKRVQEIRN------------------EADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVR-NLCN-----------ELIVVPGNDRISITANRNSTLL-LCCLIRSYLCCK--KVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLL 3627 F+E+VN + N N+ LMV SGAKG + NI I+C+ GQ +EG+R P ++LP F + P S GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+ ++Q YGEDGLD +F + N+E R + + + +L + Q I+ L + AE E L +D GR+AL + ++ LKKT P + R ++C E + N + ++ S LL + C +R+ L K + +CD PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ + S N KTP ++I +L Sbjct: 6 FKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKG-RSNI--CISCLLGQIELEGRRPPLMPSGKSLPCFQPYEAEPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPRQFPFIKENYEVIRKSKCLDEVLAKLDPKAAQSHFQAIKKWKAKHEHASPRTGAFLLFSQKKLGKMKAEAEGLSVDL----------NNGRVALTLQLMEKWKTLDDGSRVKYLKKTSHCPDPCLAVFRPDICFGSVSETFSSMIETYLSQFNIKHEFDSSSGSDLLCMHCSLRNLLQLKWQRALCD-------------------------PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMSIPIL 413
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Match: ENSAMXT00000011881.2 (pep primary_assembly:Astyanax_mexicanus-2.0:24:12464356:12466989:1 gene:ENSAMXG00000011559.2 transcript:ENSAMXT00000011881.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11 Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKC 567 R LSV I + P NGL D GP D +C TC + + CPGHFGHI+L PVYN +K+ I+R C C Sbjct: 26 RKLSVKSITNSILLDNVGTAAP--NGLYDLALGPADSKEICTTCMQDFTHCPGHFGHIDLHLPVYNPLLFDKLYLIIRGSCLSC 107
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO21 (RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime [Source:SGD;Acc:S000002299]) HSP 1 Score: 1107.43 bits (2863), Expect = 0.000e+0 Identity = 575/1176 (48.89%), Postives = 782/1176 (66.50%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDG--KPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII-RQGCNFVQPKFRRNGLDY-SMETKDSDDGKGKQP----LYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQ-LSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 R++SV+ I +PE + + K GL DPR G +D+ CQTC ++ECPGHFGHI+LA+PV+++G+ KI K+ VC C KLL++ H+ +R+ + + +KRF I CK ++C+ E ++ R GC QP R++GL KD G +P L +++ +FK IS +D +GFN +SRPE MILT L VPP VRP+I N S + DDLT KL +I+K N + E NG I E E+ LQ+HVAT MDN+ P A+QKSGRP+KS++ RLKGK GR+R NLMGKR D++ARTVI+ DPNL LDQVGVP++IA+ LT+PE VTP+N L QLVRNG +PGAK+VIR++GDRIDL+ + DIQL YG VERH++++D V+FNRQP+LHKMSMM HRVKV+P+STFRLNLSVT PYNADFDGDEMNLH+PQS+E AE++ L V +++PQSN+P M IVQD+L K+T+RDTF+ +++++L ++P W+GV+P P I KP+ LW+GKQ+ S+ IP ++ R D G +S D +LI +GQ+I G++ KKT+GSS+G L+H++ E+ F NIQ VVN WLL G + GI DT+ + T EI I +AK V D + +N L + G +L ++FE+ V LNEARDK G A+ +L N+ MV++G+KGS INI+Q+ ACVGQQ+VEGKRI FGF RTLPHF K D+ PES+GFVENSYL GLTP EFFFHAMGGREG+IDTAVKTAETGYIQRRL+KA+E +MV YD T RN + +IQ YGEDG+D +E Q L T ++ FE+ +R D+ + D L L E EI + + +D E++QL DR+FLRE + LP N++R+I NA+ TF ID K +D+ DIV V++L L+V+ G + I A R++ L CCL+RS L ++V+ + RL+ +A +W++ I F +S VHPGEMVG LAA+S+GEPATQMTLNTFHFAGV++K VT GVPRLKEI+NV++N KTPSLT+ L A D E AK I +++EHTTL+ + ++SEIYYDPDP ++V+ D + ++ ++ D + ++ Sbjct: 28 RAISVAK---IRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDS--KKRFAAIWTLCK----TKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF--------DEG-TTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESG-SEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGE-ANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQ 1183 HSP 2 Score: 193.356 bits (490), Expect = 1.108e-49 Identity = 136/376 (36.17%), Postives = 208/376 (55.32%), Query Frame = 3 Query: 3810 QKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDI-ICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSP---SGFSEA---GMSPSPGLGFSPMMSP-----KTPHDYFYGLNSPGMNP 4901 Q+S ++LR+ L R + DK L++ + E+I + FKND+ + D + L++R R+++ E E + L+ I+N +L+ I L+G+ I +V + K R + + G++ K EW+LETDG L +V+ +D +N +I E GIEA R A+ E+ NVI+ DGSYVNYRH+ALL ++MT +G L S+ RHG NR TGAL R SFEETV+IL EAGA AE D +GVSE+++LGQ+A +GTG FD++++ L + +P GG TP ++ S ++ + L FSP SG ++A G + G + SP + P +G++SPG +P Sbjct: 1187 QQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDH--MLKKIENTMLENITLRGVENIERVVMMK-----YDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL--VKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDE---------LMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP 1544
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPO31 (RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21 [Source:SGD;Acc:S000005642]) HSP 1 Score: 573.163 bits (1476), Expect = 1.542e-175 Identity = 334/914 (36.54%), Postives = 518/914 (56.67%), Query Frame = 1 Query: 367 QDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPK--IREIMKKTEGSYRKRFDL--IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAH------------------QVVEVFKRISNEDCIIMGFNYKY--SRPESMILTVLAVPPMAVRPAIVMNHSGKAH-DDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNES---TFLPVAIQKSGR--PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIREN---------GDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV----MPKPTIAKPQRLWTGKQLFSLII------PGKVNCNRTHSTH-PESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSG-SLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNF 2952 +D PK NG +DP+ G C TC GN++ C GHFGH+ LA PV++IGY + I+IL+ +C CS +L++ D + + E+ + + R+ L I ++CKK + C + +K + FR G + E KD G+ K+ L AH + + +FK+I + DC ++G + RPE+ I L PP+ +RP+++M S ++ DDLT KLTEIV ++ I+ + G++ ++E + LQ VA ++++S LP + G+ P++ QRLKGK GR R NL GKR D++ RTVI+ DPNL++D+V VP +A+ LT+PE+VT +N+ LQ+L+ NG ++PGA ++++ N GDR+ L + L G++VERH+ + D V+FNRQP+LH++S++ H K+ P+ TFRLN V PYNADFDGDEMNLH+PQ++EA AE NL V ++TP+S P+++ QD +T ++ +D+F + A + LL + +G+ +P P I KP LWTGKQ+FSL+I P +N + + P S P + +S D V+I Q++ G++ K LG S+ + I + + N N + + +L G +IGI D +++ + + A + IT + EL + PG + QT E K+ +L++ R++ G L +N+ +M G+KGS +N+SQ++A VGQQ + G R+P GF+ R+LPHF K P+S+GFV NS+ +GL+P EF FHA+ GREG++DTAVKTAETGY+ RRLMK++E + +YD TVR + ++Q YG DGLD +E P +NF R++ Sbjct: 44 KDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPE-KDIWVGEWKEVL-AHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAK-------NLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMS--DGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNE-MSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQP------VNFNRSW 939 HSP 2 Score: 105.145 bits (261), Expect = 7.416e-23 Identity = 64/176 (36.36%), Postives = 100/176 (56.82%), Query Frame = 3 Query: 4074 QGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 +G+P IS+ ++ DD KR ++ VE + L D C V+ R TT+NH+ E+F GIEAAR +I E+ +S G V+ RH+ LL ++MT+KG ++ I R G+++ L +SFE+T D L +A + + D ++GVSE I+LGQ +GTG F ++ Sbjct: 1273 KGLPDISRAVIN--IRDDGKRELL--------VEGYGLR-DVMCTDGVIGSR------TTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVV 1431 HSP 3 Score: 89.7373 bits (221), Expect = 3.292e-18 Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVS-SEIYYD 3729 + K+++ PG +G++ A+S+GEP TQMTL TFHFAGV++ NVTLGVPR+KEIIN S+ TP + L+ D A+ + +E T L +A ++Y D Sbjct: 1078 YRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRVEKTLLSDVAFYVQDVYKD 1179
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Match: RPA190 (RNA polymerase I largest subunit A190 [Source:SGD;Acc:S000005868]) HSP 1 Score: 341.273 bits (874), Expect = 1.925e-95 Identity = 236/747 (31.59%), Postives = 371/747 (49.67%), Query Frame = 1 Query: 865 VFKRISNEDCIIM-------GFNYKYSRPESMILTVLAVPPMAVR-PAIVMN--HSGKAHDDLTHKLTE---IVKVNNEIRQAEENGVA---STIILEKENSLQYHVATLMDNESTFLPVAIQKSGR-----PLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL------KRR--------PDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPK-------------PTIAKPQRLWTGKQLFSLII-----PGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGR--SLLQTFEE-----------------KVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 VF++ E C++ + K + +S + VL VPP R P+ + H + L+ LT I +N+++ + +++ V+ +I + L T+ ++ + F+ + + GR P+ +KQ L+ K G R ++MGKR +Y AR+VI+ DPN+ +++GVP A LT+PE VT +N L+Q V NG +PGA + E+G + L +R+ P S+ + + V RH+ N D V+ NRQPTLHK SMMGH+V+VLP T RL+ + TG YNADFDGDEMN+H PQ++ A AE NLA + +TP S PV ++QD ++A +T +D+F + + + + P+ PTI KP LWTGKQ+ + ++ P N ++E Y + VL ++G L+ GIL K G+S ++H + + + + + N++ T G+ D L A + + +I K D +N TP LL+ +E KVN I ++ K NS M +SGAKGS +N+SQ++ +GQQ +EG+R+P +TLP F + + G+V+ + +G+ P E++FH M GREG+IDTAVKT+ +GY+QR L K +E V V YD ++R+ L+Q YG D +D Sbjct: 327 VFRK---EQCVLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSR---LMNAFVTIQNDVNAFID-STKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI-----YGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNE----YWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGM-DDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAID 1056 HSP 2 Score: 88.1965 bits (217), Expect = 1.147e-17 Identity = 52/174 (29.89%), Postives = 92/174 (52.87%), Query Frame = 3 Query: 4080 IPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 IP I + +P ++ KR+++ +F+ + W E ++D + TSN + + +T+G+EAARN I E+ NV S V++RHL L+ ++MT +G ++ +R G+ T + + S+E T L +A E + + S I++G+L +GTG FD+L Sbjct: 1501 IPHIDRCVHPEP--ENGKRVLVTEGVNFQAM--WDQEA------------FIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657 HSP 3 Score: 85.5001 bits (210), Expect = 7.386e-17 Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTI 3618 + +S ++PGE VG +A++S+GEP+TQMTLNTFHFAG A NVTLG+PRL+EI+ S KTP +T+ Sbjct: 1174 YMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTL 1240
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39976 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S8F9]) HSP 1 Score: 1385.55 bits (3585), Expect = 0.000e+0 Identity = 690/1185 (58.23%), Postives = 878/1185 (74.09%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCN---------VICDESEECEKGLNTII-------RQGCNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 + +SV+ G+ Y E + G+PK NGLMDPRQG +D++S CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K LR VCF CSKLLV++++P+++EI+ K+ G RKR +++ CK C + D E EK L I GC QPKFR+ L+ + E K + D + K L A +V E+FKRIS+E+C +G + K +RP+ MI+TVL VPP+ VRP+IV++ + ++ DDLTHKL +IVK NN +R+ E NG A+ II E LQYHVATL DNE LP A+QKSGRPLKS+KQRLK K GR+R NLMGKR D++AR VIT DPNL++DQVGVPR IAQNLTFPE VTPFN +Q+LVR G YPGAK++IR+NG+R+DL+ P SD+ L +G VERH+ ++D ++FNRQPTLHKMSMMGHRVK+LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E+ AEI + V + ++TPQSN+PVM IVQDSLTA K T RD F+ MM+LLM++P+W+G +P+P I KP+ LWTGKQ+ S+IIPG VN RTHSTHP+ EDSGPYK IS DT+ I LCKK+LG+SSGSL+HIIA+E D F++++Q VVNNWLL EGH+IGI D + ++ T +EI+ KAK +V + I K H++EL TPG +L QTFE +VN ILN+ RDKTG SAQKSLS++N+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGF+ RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKT+ETGYIQRRL+KAME + V YD TVRN +QLIQLRYGEDG+DG +EFQ +PT + + FER F FD + ++R+L E V+++ A L +++ E+ +L+ DRE LR+ ++ S R+ALP N+ RLIWNA+ TF I +D+ P ++ VR L +L++V G D IS A N+TLL L+RS LC K+V + LS EA EW++GEI F S V PGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVS+ PKTPSLT+ L+G AA+D E+AK + LEHTTLRK+ ++ IYYDPDP+N+V+ D+D+V YYE PDFDV + Sbjct: 28 KQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLVRIYLPNAYCNHGGCGRYQPKFRKTALELTAEWKHVNEDANEKKITLTAERVYEIFKRISDEECNALGMDPKNARPDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRRNELNGAAAHIIAEDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNGERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEKDAMMNLLMWIPTWDGKIPQPAILKPRPLWTGKQICSMIIPGNVNVIRTHSTHPDDEDSGPYKHISPGDTKARI---------LCKKSLGTSSGSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDTYDEIQRATKKAKKEVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQLRYGEDGMDGIAIEFQNMPTMRPSKTAFERKFHFDPTNDRWMTRYLQEDLVRDLSGSATALQELEGEFNKLQEDREILRK-IQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLRVIEGVRELSKKLVIVAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLIGQAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDFDVAR 1202 HSP 2 Score: 286.96 bits (733), Expect = 6.820e-78 Identity = 177/402 (44.03%), Postives = 245/402 (60.95%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXX---XXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM------MSGVAQNLFMVGGA-----------TPMNXXXXXXXXXXXXXXXXXXXXTG----------FGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNP 4901 +P F + S ++LRI L RK++TDKKL+++ I+EKI F +D+ C D+N + LVLRIR++ + +E+ D+M+D +L I+ +L ++ LQGI ISKVY++ P D KKR+++ +G+F+ ++EW+LETDG L +VL+ER VD TTSN I EIF GIEA R A+E EM +VISFDGSYVNYRHLALLC+IMT +G LM+I RHGINRQE GAL RSSFEETVD+LM+A AHAE D ++GVSE I++G+L R+GTG FD++++ + +P M G + + GA TP N + + S + G SP GFS + MSP+PG SP P +P+ SPG +P Sbjct: 1195 MPDFDVARISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNNDDGKMQDDEDVDKMDDDVFLRCIEANMLTDMTLQGIESISKVYMNLPHEDKKKRIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCKHGMEIPTNIMGPGMGGAMAAIGVFFGAAGSPSAMSPQMTPWNMGATPAYMEAWSPGMGSGMTPGAASFSPSAASDASGMSPGGFSPSWMSPTPGSPVSP--GPTSPYIPSPAAASPGYSP 1594
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO36291 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7SJ34]) HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0 Identity = 417/1228 (33.96%), Postives = 641/1228 (52.20%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLV----------NVHDPKIREIMKKTEGSYRKRFDLIHEEC----------KKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDG---KGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVIRENGDRIDLKRRPDSSDI--QLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSW--NGV---MPKPTIAKPQRLWTGKQLFSLII-PG-KVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNF-RFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFD-VDKKVCMC*ELC*RERKSPIRN*ACKVLLRKSPNISKTIL-YVMFPMRT 3948 P G++DP G K MC+TC +++C GH+G+I+L PV+++G+ I IL+ VC C ++L+ + P I + KK C +KV ++ ++ + K ++ II +F ++ D ++E K ++ L +V+++F++I +D ++ F+ S P +I+ + PP+ +RP+++ SG DD+T KLTEIV +N+ IR+ G +I+E + LQ A +++E + +P+ +Q + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +DQV VP +A+ LT+PERVT N K ++QLV NG +PGA F+ + + + + I QL G+ VERH+++ D V+FNRQP+LHK+S+M H V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L V ++TP++ P+++ +QD +T +T +D FL+ + + L + + GV +P P I KP RLWTGKQ+FS+++ P KV + SG ++ D+ V+I N L+ G L K LGS S S+ +++ + + + + +L G +IGI D + + ++ D I + +L + PG S T E + L+ RD G + + L K N+ M V G+KGS INISQ+IACVGQQ + GKRIP GF+ R+LPHF + P ++GFV+NS+ +GLTPTEFFFHAMGGREG++DTAVKTAETGY+QRRL+K++E + +YD TVR ++Q RYG DGLD +E + P L+F R F + + + R LT R +E I I E ++F ET + N + K+ + + VVP SIT+N+ I Y+ NR + L+ + R + ++++ PG VG++ A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN SR TP ++ +L +D E+A+ + +E T L ++ E + PD +++ D + +R D D + +C +L R +S +R + V+ +K+ L YVM +R+ Sbjct: 50 PVPYGVLDPHMGTCSKDRMCETCGKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNCCRVLLPPAEKKQFLDTLKKPNISSLAKKGMKKKIVEKCKKISHCPYCEDLNGFVRKVGLMKIVHEKYKTTRKIVDPIIS---DF------QSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQIPEQDYPLLMFSPGMSHPHDLIMRRILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFLNDVIRKHRSVGAKVQMIMEDWDFLQLQCALYINSEMSGIPLNMQPK-KGTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPGANFIQQRETNTKRFLKYGNRKLIAKQLKIGDTVERHLIDGDVVLFNRQPSLHKLSIMAHLATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGVKNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGKDTGVDIELPPPAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQYTSGEDLCVN--DSFVVIHNSDLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRVARICPFFLSNRGFSIGIGDVTPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEAVILKELSVIRDHAGKACLRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFKRHSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAVKTAETGYMQRRLVKSLEDLSTQYDITVRTSTGDIVQFRYGGDGLDPTDMEGKDKP------LDFSRVFSHIQCNHVMREERPLTSSRARE------IAKGIIESSEFEMCSKDFKTET---------------SDFVEN-------------------LAKKIEKIHAQYGVVPH----SITSNK---------IVDYV--------NRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASRKISTPIISAQL--QDDRDQELARAVKGRIERTLLGEVTEYIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSSRKL--RLNQSQVRVHSSAVICVYPTESAKSSLHYVMQQLRS 1194 HSP 2 Score: 100.908 bits (250), Expect = 4.508e-21 Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 3 Query: 4173 EEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 E + L +G L V++ V TTSN+ E+ GIEAAR I E+ + G ++ RH+ LL E+M KG ++ I RHG+ + + L +SFE T D L EA H DP+ GVSE I++G +GTG F +L Sbjct: 1224 EHYKLLVEGDDLQAVISTMGVKGNGTTSNNTIEVERVLGIEAARQTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLMLASFERTADHLFEAALHGRKDPIDGVSECIIMGMPMNIGTGMFKLL 1366
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39496 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S9W9]) HSP 1 Score: 285.034 bits (728), Expect = 2.606e-78 Identity = 187/568 (32.92%), Postives = 289/568 (50.88%), Query Frame = 1 Query: 1345 IAQNLTFPERVTPFNKKFLQQLVRNGTM-YPGAKFVIRENGDRIDL------KRRPDSSDIQLSYGE---------IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV---MPKPTIAKPQRLWTGKQLFSLI----IP-----------GKVNCNRTHSTHPESE--DSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKG-------HSNELNSTPGRSLLQ---TFEEKVNMILNEARDKTGSSAQKS---LSKY-----NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 A+ LT+P+ VT +N K L+Q V NG + +PGA V E+G +I L +R+ + + G+ V RH+ N D ++ NRQPTLH+ S+M H+V+VLP T RL+ + YNADFDGDEMN H PQ++ A AE +A N + P+ P+ ++QD + + MT+R N + L+ ++ + P I KP + W+GKQ+ S I IP K++ ++ P + D K +++ V+I +G L+ G+L K G++ L+H G + + V ++L F G T+G+ D L + + I K + D T H ++L + R+ T +++++ + + D S K+ L Y N+ LMV SGAKGS +N Q+ +GQ +EG+R P R+LP F+ D P + GFV+ +L G+ P E+FFH M GREG++DTAVKT+ +GY+QR L+K +E + V YD TVR+ ++Q YGEDGLD Sbjct: 3 FAKKLTYPQPVTTWNVKELRQAVINGPLVHPGAILVESEDGKKIRLSETDVNQRQAIAKRLLTPSGDNKGSHVNCKKVYRHIQNGDVMLLNRQPTLHRPSIMAHKVRVLPSEKTIRLHYANCKAYNADFDGDEMNAHFPQNELARAEAYTIASTNFNYLVPKDGTPLSGLIQDHMVSGVLMTIRGRMFNKLDYQQLVYGALNFKNQPIELLMPCILKPTQFWSGKQVISTILLNLIPLGSKRLNLKGKAKISAKNWNTRKPRRQFLDLEVLKGDDMSESEVVIRDGHLLCGVLDKAHYGNTPYGLVHCCNELYGGVMSGELLSALARVFTSFLQFHGFTLGVKDILVTERADKIRRKLIAKGRVSGKDAATSAFGMPEDCHRSDLEARMQRAHHNSDGTDMKELDLCMKKKTDHYQDSINKACLPLGLYQRFPGNNLQLMVQSGAKGSAVNCMQISCLLGQIELEGRRPPIMLSGRSLPSFLPYDTSPRAGGFVDGRFLTGIRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLQVAYDLTVRDSDGSIVQFYYGEDGLD 570 HSP 2 Score: 95.9005 bits (237), Expect = 1.326e-19 Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 3406 EIRNIFY----KSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEII-NVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENS 3747 + R++ Y +S V PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PR++EI+ S N KTP++ + LL A K ++ AKK+ L L ++ S +++ P+ S Sbjct: 741 KFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMTASANIKTPTMDMPLL-AGKKVIKRAKKLQQKLNRVMLSQVLRSIDVWESLSPKES 858 HSP 3 Score: 58.9214 bits (141), Expect = 2.485e-8 Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 3 Query: 4182 ILETDGTCLPKVLAERY---VDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 +L+T+G L +A RY ++ + +N I + T+GIEAA AI E+ NV G +V+ RHL L+ + MT++G + + +R GI + SFE T L A + + +K S +++G++ GTG F++L Sbjct: 1099 VLKTEGVNLQ--VAFRYPNIINVDKLYTNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGIE-SSASPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGGGTGSFELL 1238
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO27435 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T993]) HSP 1 Score: 107.071 bits (266), Expect = 6.710e-24 Identity = 117/450 (26.00%), Postives = 196/450 (43.56%), Query Frame = 1 Query: 376 KPKKNGLMDPRQ-GPMDKYS--------------MCQTCSGNVSECP---GHFGHINLARPVYNIGY----KEKIIKILRSVCFKCSKLLVNVHDPKIRE-IMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGL--NTIIRQGCNFVQPKFRRNGLD-YSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLN 1647 KP+++GL R GP+ Y +C C V+E GHINL P+ +I Y KI IL K ++ I+ I + EG + D + EE + + + + E++ + I + G + R LD S + + + + + + + E KR++ + + + PE MIL V+ V P +RP + ++ A DL ++ NN +++ E I+ ++ LQ V +L DN V + S RPLKSL LKGK GR R NL+GKR DY+AR+VI P + L + G+P+ +A L PF +++L+ G + K V ++ +I K+ P DI +++ V+ NR PTLH++ + + K++ +L+ Sbjct: 37 KPERDGLFCERIFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIGYILGLPSKKLDMIIYYERYVVIQPGIAQGLEGETLNKLDFLTEE-EYLNILDTLPMENQYLDDNDPNKFIAKMGAECIMDLLSRIDLDSLSFQLRHAANTETSK----QRKTEALKRLNVVESFREANKNRENLPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTE-SNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPEMRLFECGLPKDMAAEL-----YKPF---VIRKLIERGIV----KTV--KSAKKIIDKKEPVVWDIL--------ENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLH 458
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Match: EDO39497 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S9X0]) HSP 1 Score: 57.3806 bits (137), Expect = 2.943e-10 Identity = 24/45 (53.33%), Postives = 27/45 (60.00%), Query Frame = 1 Query: 379 PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYN 513 P GL DP GP D+ +C TC N CPGHFGHI L PVY+ Sbjct: 27 PNHGGLYDPVLGPTDRDDLCGTCGQNNFSCPGHFGHIELPLPVYH 71
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848]) HSP 1 Score: 1466.06 bits (3794), Expect = 0.000e+0 Identity = 713/1168 (61.04%), Postives = 895/1168 (76.63%), Query Frame = 1 Query: 343 GIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G RKR ++E CK C N E ++ E+ + G C QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+ +I+G + K++RPE MI+TVL VPP+AVRPA+VM S + DDLTHKL +IVK+NN++R+ E++G A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G MP+P I KP+ LWTGKQ+FSLIIPG +N RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTVVNNWLL EGH+IGI D++ +A T +I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L + K +N FE+ F+FD + L R L E V+++ A + + ++ E++++K DRE LR + ++ LPCN+ R+IWNA+ F+I+ TD+ P +V V+ L +LI+V G+D +S A N+TLL +RS LC K++ + RLS EA +W++GEI F +S HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 38 GIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLIIVNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 292.352 bits (747), Expect = 4.576e-79 Identity = 178/369 (48.24%), Postives = 243/369 (65.85%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPM-MSG--VAQNLFMVGGATP-----MNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGL--GFSPMMSP 4850 +P F + S ++LRI L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA GTGCFD+L++ + +P + G VA M G+ P M+ A + + + + S G G+ +GFS + S + G G+SP SP Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSP 1565
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr2a (RNA polymerase II subunit A [Source:NCBI gene;Acc:101160848]) HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0 Identity = 713/1168 (61.04%), Postives = 895/1168 (76.63%), Query Frame = 1 Query: 343 GIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTC-------NVICDESEECEKGLNTIIRQG-CNFVQPKFRRNGLDYSMETK--DSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDK 3813 GI YPE T+ G+PK GLMDPRQG +++ CQTC+GN++ECPGHFGHI LA+PV+++G+ KI+K+LR VCF CSKLLV+ ++PKI++I+ K++G RKR ++E CK C N E ++ E+ + G C QP+ RR+GL+ E K + D + K L +V E+FKRIS+E+ +I+G + K++RPE MI+TVL VPP+AVRPA+VM S + DDLTHKL +IVK+NN++R+ E++G A+ +I E LQ+HVAT++DNE LP A+QKSGRPLKS+KQRLKGK GRVR NLMGKR D++ARTVIT DPNL +DQVGVPR+IA N+TFPE VTPFN LQ+LVR G + YPGAK++IR+NGDRIDL+ P SD+ L G VERHM + D V+FNRQPTLHKMSMMGHRV++LP+STFRLNLSVT PYNADFDGDEMNLH+PQS E AEI LA V ++++TPQSNRPVM IVQD+LTA K T RD FL E+M+LLMFL +W+G MP+P I KP+ LWTGKQ+FSLIIPG +N RTHSTHP+ EDSGPYK IS DT+V++ENG+LIMGILCKK+LG+S+GSL+HI LE D F++NIQTVVNNWLL EGH+IGI D++ +A T +I+ I KAK DV + I K H+NEL TPG +L QTFE +VN ILN+ARDKTGSSAQKSLS+YN+F MVV+G+KGSKINISQVIA VGQQNVEGKRIPFGFK RTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+K+MESVMVKYDATVRN I+Q++QLRYGEDGL G VEFQ L + K +N FE+ F+FD + L R L E V+++ A + + ++ E++++K DRE LR + ++ LPCN+ R+IWNA+ F+I+ TD+ P +V V+ L +LI+V G+D +S A N+TLL +RS LC K++ + RLS EA +W++GEI F +S HPGEMVG+LAA+SLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKE+IN+S+ PKTPSLT+ LLG AA+D E AK I LEHTTLRK+ ++ IYYDP+P+N+VV D++WV YYE PDFDV + Sbjct: 38 GIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQNLASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDREILRAIFP-TGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLIIVNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDVTR 1204 HSP 2 Score: 293.123 bits (749), Expect = 2.312e-79 Identity = 181/379 (47.76%), Postives = 241/379 (63.59%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLD-LVLRIRMLXXXXXXXXXXXXXXXX----XYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMS------PSPGLGFSPMMSPKTPHDYFYGLNSPG 4892 +P F + S ++LRI L RK +TD+KL+++ IAEKI F +D+ C D+N + LVLRIR++ D+ K +E +E+ D+ +L I++ +L ++ LQGI QISKVY+ P TD+KK++II G+F+ ++EWILETDG L +VL+E+ VD TTSN I EIF GIEA R A+E E+ +VISFDGSYVNYRHLALLC+ MT +G LM+I RHGINRQ+TG L + SFEETVD+LMEA +H ECDPMKGVSE+IMLGQLA GTGCFD+L LD +C M + N+ + A + + + S G+ A+SP+ S PSPG SP SP +P Y SPG Sbjct: 1197 MPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAASHGECDPMKGVSENIMLGQLAPAGTGCFDLL-----LDAEKCKYGME-IPTNIPGISVAGRSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPLSPYIPSPGGAMSPNYSPTSPA---YEPRSPG 1566
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164]) HSP 1 Score: 561.222 bits (1445), Expect = 5.846e-171 Identity = 344/952 (36.13%), Postives = 539/952 (56.62%), Query Frame = 1 Query: 364 TQDGK--PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDD---GKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKRRPDSSDIQ-LSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFER---NFR--FDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLR 3093 +QD K P +G++D R G +K C TC N+++C GH+G+++L P +++GY + +I IL+ +C CS +++ + + +++K+ +Y ++ L I E+C+K C+ ++C GL II + V P D ++E + + ++ L V+ +F+RI +ED ++ N + +P +I+T L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LT+PE V N + +++LVRNG ++PGA F+ R N + LK Q L +G+IVERHM++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + ++ ++ + +P P I KP LWTGKQ+FS+I+ +C + + + G + + + D+ V+I N +L+ G + K TLGS S ++ +I+ + + N + + + +L G +IGI D + KAK D+ D I + +L PG S +T E + L+ RD+ GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ + +IQ YG DGLD +E + P L F+R N R + D LS++ I AD + D+ E++K +F+R Sbjct: 43 SQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKC--GLLKIIHEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLMNPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQNRRNQIKRFLKYGNREKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRPSKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHG--------LLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEP------LEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEEIK---KFIR 974 HSP 2 Score: 107.457 bits (267), Expect = 1.207e-22 Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T +L D + A+ + +E T L +++ E + PD Sbjct: 1004 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQL--DVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1124 HSP 3 Score: 92.8189 bits (229), Expect = 2.908e-18 Identity = 55/178 (30.90%), Postives = 99/178 (55.62%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ +++ + + +K +L++ +G + V+A V+ TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++M++KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1202 QGIPEVARAVIHIDEQSGKNKYKLLV----------------EGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1363
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr3a (RNA polymerase III subunit A [Source:NCBI gene;Acc:101157164]) HSP 1 Score: 559.681 bits (1441), Expect = 2.310e-170 Identity = 342/944 (36.23%), Postives = 534/944 (56.57%), Query Frame = 1 Query: 364 TQDGK--PKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDP-KIREIMKKTEGSYRKRFDL---IHEECKK---VKTCNVICDESEECEKGLNTIIRQGCN----FVQPKFRR--NGLDYSMETKDSDD---GKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMN-HSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGAKFVI-RENGDRIDLKRRPDSSDIQ-LSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNG-----VMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESED-SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSS-GSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDT--------ITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFER---NFR--FDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQL 3069 +QD K P +G++D R G +K C TC N+++C GH+G+++L P +++GY + +I IL+ +C CS +++ + + +++K+ +Y ++ L I E+C+K C+ ++C GL II + V P D ++E + + ++ L V+ +F+RI +ED ++ N + +P +I+T L VPP+ +RP++V + SG DDLT KLTEI+ +N+ I++ +G + +I+E + LQ A +++E + +P+ + + + QRLKGK GR R NL GKR D++ RTVI+ DPNL +D+V VP +A+ LT+PE V N + +++LVRNG ++PGA F+ R N + LK Q L +G+IVERHM++ D V+FNRQP+LHK+S+M H +V P TFR N V PYNADFDGDEMNLH+PQ++EA AE L ++TP++ P+++ +QD LT +T++DTF + ++ ++ + +P P I KP LWTGKQ+FS+I+ +C + + + G + + + D+ V+I N +L+ G + K TLGS S ++ +I+ + + N + + + +L G +IGI D + KAK D+ D I + +L PG S +T E + L+ RD+ GS+ + L K NS +M + G+KGS INISQ+IACVGQQ + G R+P GF+ R+LPHF K P ++GFV +S+ +GLTPTEFFFH M GREG++DTAVKTAETGY+QRRL+K++E + +YD TVR+ + +IQ YG DGLD +E + P L F+R N R + D LS++ I AD + D+ E+L Sbjct: 43 SQDTKHTPLPHGVLDHRMGTSEKDRPCLTCGKNLADCLGHYGYLDLELPCFHVGYFKAVIGILQMICKTCSSIMLTKEEKLQFLDLLKRPNLAYLQKRGLKKKISEKCRKRTVCLNCSAFNGTVKKC--GLLKIIHEKYKTTKKVVDPFVSEFMQSFDTAIEHNKLIEPLLNRAQENLNPLVVLNLFRRIPDEDIPLLLMNPEAGKPADLIITRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPGANFIQNRRNQIKRFLKYGNREKIAQELRFGDIVERHMIDGDVVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALILMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRPSKDCPVKANLRTKGKQYCGKGEDLCYNDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQLEAANAMSRLARLAPVYLSNRGFSIGIGDVTPGHG--------LLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSMGDIIQFIYGGDGLDPAAMEGKDEP------LEFKRVLDNIRAVYTCPDEPALSQNKLVLTSDAIMKRADFMCCRDSFLEEL 969 HSP 2 Score: 107.457 bits (267), Expect = 1.233e-22 Identity = 53/123 (43.09%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 3367 NRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPD 3735 +R++ LE + R+ + ++Q+ PG VG+L A+S+GEP TQMTL TFHFAGV++ N+TLGVPR+KEIIN S+N TP +T +L D + A+ + +E T L +++ E + PD Sbjct: 1016 DRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAQL--DVEDDADFARLVKGRIEKTLLGEISEYIEEVFLPD 1136 HSP 3 Score: 92.8189 bits (229), Expect = 3.096e-18 Identity = 55/178 (30.90%), Postives = 99/178 (55.62%), Query Frame = 3 Query: 4074 QGIPQISK--VYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDIL 4601 QGIP++++ +++ + + +K +L++ +G + V+A V+ TTSN+ E+ +T GIEAAR+ I E+ + G ++ RH+ LL ++M++KG ++ I R G+ + + L +SFE+T D L +A + D + GVSE I++G +GTG F +L Sbjct: 1214 QGIPEVARAVIHIDEQSGKNKYKLLV----------------EGDNMRAVMATHGVNGSRTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLL 1375
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Match: polr1a (RNA polymerase I subunit A [Source:NCBI gene;Acc:101156830]) HSP 1 Score: 327.405 bits (838), Expect = 3.312e-90 Identity = 218/641 (34.01%), Postives = 326/641 (50.86%), Query Frame = 1 Query: 1123 LQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDLK----RRPDSSDIQL---SYG------EIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFS-TFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLM-FLPSWNG---VMPKPTIAKPQRLWTGKQLFSL----IIPGK-VNCNRTHSTHPESED-------SGP-YKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWL-LFEGHTIGIVDTLYNAATRE-----------------EIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQT----FEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 LQ HV + D++ L ++Q L+ K G R ++MGKR DY AR+VI D + +++G+P A LT+P+ VTP+N K L+Q V NG ++PGA VI E+G + L + ++ QL S G +IV RH+ N D ++ NRQPTLH+ S+ H ++LP RL+ + YNADFDGDEMN H PQS+ AE L N+ + P+ +P+ ++QD + + +MT+R F + L+ L G ++P P + KPQ LWTGKQ+ S +IP K V N + S+ + P Y+ S D++V+I G+L++G+L K GSS+ L+H + G + + +L L+ G T+G+ D L + + FN+ D D ++ LN P + T F+E N + N+ + N+ LMV SGAKGS +N Q+ +GQ +EG+R P + LP F D P + GFV +L G+ P EFFFH M GREG++DTAVKT+ +GY+QR ++K +E ++V+YD TVR+ ++Q YGEDGLD Sbjct: 382 LQSHVNIVFDSDMDKLMT------EKYPGVRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGASMVINEDGRKTILSPTNFTQREAVAKQLLTPSLGPHKMSMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVFRGLTDKRGRVKLLP-PAVLKPQHLWTGKQVVSTLLLNVIPEKAVPLNLIGRSKIPSKAWIKLPPRAAPGYQPESMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLGCLARLFTAYLQLYRGFTLGVEDILVKPGANKRRRKIIESSRNVGSQALQAAFNLPPGVDPA-DARSRWQDAHLN--PDQRDFSTADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1012 HSP 2 Score: 84.7297 bits (208), Expect = 1.055e-15 Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTI 3618 + +S PGE VG LAA+S+GEP+TQMTLNTFHFAG NVTLG+PRL+EI+ V S N KTP ++I Sbjct: 1180 WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSI 1246 HSP 3 Score: 66.6254 bits (161), Expect = 2.824e-10 Identity = 40/143 (27.97%), Postives = 75/143 (52.45%), Query Frame = 3 Query: 4173 EEWILETDGTCLPKVLAE-RYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDI 4598 +E +L T+G + ++ +D SN + + T+GIE A IE E+ +V + G V+ RHL+L+ + M +G ++RH I R + L + +FE + L +A D ++ S +++G++ + GTG F++ Sbjct: 1541 KETVLNTEGINMHEMFKYGEILDLNRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRHAI-RSNSSPLQQMTFETSYKFLKQATMLGSHDQLESPSACLVVGKVVKGGTGLFEL 1682 HSP 4 Score: 64.3142 bits (155), Expect = 1.388e-9 Identity = 28/68 (41.18%), Postives = 36/68 (52.94%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL 576 G N L D GP D +C TC + + CPGHFGHI L PVYN + +K+ ++R C C L Sbjct: 43 GNVAPNSLYDLALGPADLKEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHML 110
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000078620.1 (SMESG000078620.1) HSP 1 Score: 2393.62 bits (6202), Expect = 0.000e+0 Identity = 1138/1140 (99.82%), Postives = 1139/1140 (99.91%), Query Frame = 1 Query: 397 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVN+HDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADIL DIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK Sbjct: 1 MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNIHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILTDIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 1140 HSP 2 Score: 642.114 bits (1655), Expect = 0.000e+0 Identity = 366/371 (98.65%), Postives = 367/371 (98.92%), Query Frame = 3 Query: 3792 PGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904 P F +KSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNSASPQLSQYSPSYNYSPNSSTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL Sbjct: 1133 PDFDVDKKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNSASPQLSQYSPSYNYSPNSSTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 1503 HSP 3 Score: 133.265 bits (334), Expect = 1.364e-30 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3 Query: 5343 RYSATXXXXXXXXXXXXXXXXXXRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV 5606 RYSATYNPLSPNLSSTSPSYSPNRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV Sbjct: 1657 RYSATYNPLSPNLSSTSPSYSPNRLAAASPCYSPKANSYSDLSYNPSSPSIGASNGTLNSPSMLSYSPSVNSKSIGYSPNLSSPANRV 1744
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000010459.1 (SMESG000010459.1) HSP 1 Score: 1906.34 bits (4937), Expect = 0.000e+0 Identity = 895/1168 (76.63%), Postives = 1017/1168 (87.07%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKG-KQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRNEADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDVDKK 3816 + LSV GIIY EKTQDGKPKK+GLMDPRQGP DKYS CQTC G+V+ECPGHFGHINLARPV++IG+KEKIIKILRSVCFKCSKLL +V+ ++EI+KKTE + RKRFD +++EC++ K C+V + +E + + R GC +VQP FRRNGL+Y + KD KQPL A+QV+E+F+RI+ EDC++MGFN KYSRPE MI+TVL+VPP+AVRPA+VMNH+GK+HDDLTHKLTE+VKVNNEIR AEENGVASTI+LEKENSLQYHVAT +DNES FLP AIQKSGRPLK+LKQRLKGKHGR+RSNLMGKRTDY+ARTVITADPNLNLDQVGVPR IAQNLTFPE+VTPFNK +LQQLV+NGTMYPGA FVIRENGDRIDLKRRPDSSDIQL YGE VERHMLNDDFVVFNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLH+PQS E AE+++LARV KL+ITPQSN+PVMSIVQD+LTACNKMT RD FLN AE+MHLLM+LP+WNG +PKP I KP RLWTGKQ+FSLIIPG+VNC RTHSTHPE E++GPYKWIS DT+VLIE+G+LI GILCKKTLGSS+GSL+HIIALEQ D+ G FFNN+QTVVNNWLL EGHTIGIVD LY+A TREEIK I++AK+ VF+TI K H+ EL STPG +L QTFE VN ILN+ARDKTGS AQKSLSKYN+FNLMV+SGAKGSKINISQVIACVGQQNVEGKRIPFGF+QRTLPHFIK D+GPESRGFVENSYLAGLTPTEFFFHAMGGREG+IDTAVKTAETGYIQRRL+KAMESVM+KYD+TVRNQIDQLIQ RYGEDGLDG FVEFQ LPT+K FE+ FRFDI + D+LSR+LTEKRV+EI EAD + +D EW+QL DRE +R+ +K TGGR+ LPCN+ RL+ N + FKID+LKKTDIKP DI+ KV NLC +LIVV G+D IS TAN N+TLL CCLIRS LCCKKVI + RLS EA +W++GEI+ F +S V PGEMVG+LAAESLGEPATQMTLNTFH+AGVSAKNVTLGVPRLKEIINVSRNPKTPSLT+ L G AAKD E+AK IAA LEHTTLRKLAV SEIYYDP+PE+SV+E DR+WVRTYYE PDFD+DKK Sbjct: 28 KRLSVVGENGIIYAEKTQDGKPKKDGLMDPRQGPFDKYSYCQTCGGSVAECPGHFGHINLARPVFHIGFKEKIIKILRSVCFKCSKLLADVNSSNVKEILKKTEINPRKRFDFMYDECRRNKVCSVPNSDRDEMDLKTQEMSRSGCGYVQPIFRRNGLEYFVTLKDDSSDSDSKQPLRAYQVLEIFRRITEEDCLLMGFNPKYSRPEGMIMTVLSVPPLAVRPAVVMNHTGKSHDDLTHKLTEVVKVNNEIRTAEENGVASTILLEKENSLQYHVATFIDNESPFLPTAIQKSGRPLKTLKQRLKGKHGRIRSNLMGKRTDYSARTVITADPNLNLDQVGVPRMIAQNLTFPEKVTPFNKHYLQQLVKNGTMYPGAAFVIRENGDRIDLKRRPDSSDIQLQYGETVERHMLNDDFVVFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTSPYNADFDGDEMNLHLPQSLETKAEVSDLARVTKLIITPQSNKPVMSIVQDTLTACNKMTTRDVFLNRAEVMHLLMYLPTWNGRLPKPAIYKPLRLWTGKQIFSLIIPGRVNCIRTHSTHPEPEENGPYKWISPGDTKVLIEDGELISGILCKKTLGSSAGSLIHIIALEQHPDEAGGFFNNVQTVVNNWLLIEGHTIGIVDALYDAKTREEIKQTIDRAKEAVFETIDKAHNYELQSTPGNTLRQTFETTVNKILNDARDKTGSCAQKSLSKYNNFNLMVMSGAKGSKINISQVIACVGQQNVEGKRIPFGFQQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDSTVRNQIDQLIQFRYGEDGLDGAFVEFQSLPTFKPTMAEFEKRFRFDISNEDELSRYLTEKRVREITTEADTICKLDTEWDQLCKDRELIRDIVKHETGGRVVLPCNINRLVTNGQKIFKIDLLKKTDIKPMDIIEKVENLCTDLIVVKGDDNISKTANENATLLFCCLIRSMLCCKKVIDEYRLSPEAFDWVLGEIKTRFNQSLVQPGEMVGALAAESLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTVFLTGNAAKDAEMAKSIAARLEHTTLRKLAVKSEIYYDPEPESSVIEGDREWVRTYYELPDFDIDKK 1195 HSP 2 Score: 519.235 bits (1336), Expect = 1.645e-152 Identity = 289/374 (77.27%), Postives = 323/374 (86.36%), Query Frame = 3 Query: 3789 VPGFRCRQKSLYVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXX--XXXXXXTGFGLAFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDYFYGLNSPGMNPL 4904 +P F +KS Y+LRIVL RKK+TDKKL+LQ+IAEKITEYF+NDIICH+PD+NL+LVLRIRMLKK+DEK++E EMEDRKYLEL++NLILDEICLQGIPQISKVY+ P TDDKK+++INS G FE EWILETDGTCL KVLAER VDSETT SNHITEIFETFGIEAARNAIE EM +VISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLA++GTGCFDILMN+ + +EAQ LPMMSGVA NL+MVGGATPMNSASPQL+ ++ + FG +FSP SE GMSP+P L FSPMMSPKTP DY +G SP MNP+ Sbjct: 1187 LPDFDIDKKSPYLLRIVLTRKKMTDKKLTLQAIAEKITEYFQNDIICHIPDDNLNLVLRIRMLKKEDEKDDEKLEMEDRKYLELVENLILDEICLQGIPQISKVYIHYPKTDDKKKIVINSDGAFEGKAEWILETDGTCLQKVLAERDVDSETTISNHITEIFETFGIEAARNAIEREMHHVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLAKIGTGCFDILMNYEKCNEAQALPMMSGVAHNLYMVGGATPMNSASPQLTPWTTLSSPYTFSPKPNSFGASFSPIAHSEIGMSPNPALAFSPMMSPKTPMDYGFGRYSPSMNPI 1560
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000003379.1 (SMESG000003379.1) HSP 1 Score: 1719.52 bits (4452), Expect = 0.000e+0 Identity = 828/1165 (71.07%), Postives = 975/1165 (83.69%), Query Frame = 1 Query: 325 SVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHDPKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII---RQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGFNYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGTMYPGAKFVIRENGDRIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGVMPKPTIAKPQRLWTGKQLFSLIIPGKVNCNRTHSTHPESEDSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSNELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLPTYKINNLNFERNFRFDIDDIDQLSRHLTEKRVQEIRN-EADILADIDAEWEQLKIDREFLRETLKESTGGRLALPCNVQRLIWNAKMTFKIDVLKKTDIKPTDIVNKVRNLCNELIVVPGNDRISITANRNSTLLLCCLIRSYLCCKKVICDNRLSLEALEWIIGEIRNIFYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEIYYDPDPENSVVESDRDWVRTYYEFPDFDV 3807 SV D GIIYPEK ++G K+NGLMD RQGP+D+YS C+TCS +VSECPGHFGHINL++PVY+IG+KEKIIK+LRSVCFKCS++L++ + P+I+ ++KKTE + + RFD+I E+ KK+K+C + E E +K + R+GCNF+QPK++R GLDYS+ + + + L A+QV ++F+RISNEDC++MGF+Y++SRPESMILTVLAVPPMAVRPAI+MNHSGKAHDDLTHKLTEIVKVN +I+++E+NG AS IILEK N LQYHVATL DNESTFLP AIQKSGRPLKSLKQRLKGK GRVR+NLMGKRTD+TARTVITADPNLNLDQVGVP IA+NLTFPE VTP N+ FLQ LV NG YPGAK+VI+ENGDRIDLKR P++ DI LS GE VERHM+NDDFV+FNRQPTLHKMSMM HRVKVLPFSTFRLNLSVT PYNADFDGDEMNLHMPQ+QE+ AE+A LARVN+LVITPQSN+PVMS+VQDSLTAC+KMT RD LN AEMM+LLMFLP WN VMP+P I KPQRLWTGKQLFSLIIP +N RTHSTH + E++GPYKWI++ DT+V +E+GQL+ GILCKK+LGSSSGSL+H+IA+E + + IGNFFN++Q V NNWLL +GH+IGI D LYN TR+ I+ +I AKD+VF I +L PGRSL +TFE+ VN ILNE RDKTG+ AQKSLSKYNSFN MV+SGAKGSKINISQVIACVGQQNVEGKRIPF FK RTLPHF+K+D+G ES+GFVENSYLAGLTP+EFFFHAMGGREGIIDTAVKTAETGYIQRRL+KAMES+ V+YD TVRNQI+ + Q RYGEDGLDG FVEFQ+ PTYKINN FE+ FRF DD+ L +HL EKRV+EI + ++D L D EWEQL +DR+++R+T+K+ +GGRL LPCN++RLIWNAK FKID K TDIKP DIV+ ++ LC+ LIVV G D+IS N NS L C L+RS L CK VI D+RLS A EWI+GEI+N F K+ V PGEMVG+LAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRL+EIINVSRNPKTPSL IRLLG AAKD E+AKK+AA LEHTTLRKL +SS+IYYDPDP SV+ DRDWVRTYYE D D+ Sbjct: 31 SVLDPEGIIYPEKAENGIAKRNGLMDARQGPVDRYSYCETCSSSVSECPGHFGHINLSKPVYHIGFKEKIIKVLRSVCFKCSRILIDKNRPEIKILLKKTEFNLKARFDMIVEQSKKIKSC--VSAEMMETDKEQSLSDENRREGCNFLQPKYKRKGLDYSVTIQGEHNDVTTKVLQAYQVFDIFQRISNEDCLLMGFDYRFSRPESMILTVLAVPPMAVRPAIIMNHSGKAHDDLTHKLTEIVKVNEDIKRSEQNGAASVIILEKINQLQYHVATLFDNESTFLPTAIQKSGRPLKSLKQRLKGKGGRVRANLMGKRTDFTARTVITADPNLNLDQVGVPILIAKNLTFPEIVTPINRNFLQTLVGNGCEYPGAKYVIKENGDRIDLKRHPNTKDICLSIGETVERHMINDDFVIFNRQPTLHKMSMMCHRVKVLPFSTFRLNLSVTAPYNADFDGDEMNLHMPQTQESRAEVAYLARVNRLVITPQSNKPVMSVVQDSLTACDKMTRRDVLLNKAEMMNLLMFLPCWNNVMPRPAILKPQRLWTGKQLFSLIIPKGINYTRTHSTHNDDEENGPYKWITYCDTKVYVEDGQLLSGILCKKSLGSSSGSLIHVIAVEHNYEVIGNFFNDVQRVTNNWLLIQGHSIGINDCLYNPETRDLIRSSIFVAKDNVFSKIDDCQRFKLKCLPGRSLAETFEDSVNKILNEVRDKTGTIAQKSLSKYNSFNSMVMSGAKGSKINISQVIACVGQQNVEGKRIPFNFKWRTLPHFVKSDYGSESKGFVENSYLAGLTPSEFFFHAMGGREGIIDTAVKTAETGYIQRRLVKAMESIKVEYDGTVRNQIEHVYQFRYGEDGLDGAFVEFQMFPTYKINNSKFEKKFRFRYDDVTYLRKHLIEKRVKEILSYKSDALILFDKEWEQLCLDRKYIRDTIKQESGGRLPLPCNIERLIWNAKTNFKIDQTKLTDIKPLDIVDGIKKLCDSLIVVKGEDKISKETNENSKLYFCILLRSTLSCKVVIDDHRLSSAAFEWIVGEIQNNFSKALVPPGEMVGALAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVSRNPKTPSLNIRLLGKAAKDAELAKKVAARLEHTTLRKLTLSSKIYYDPDPMESVIPEDRDWVRTYYELADEDI 1193 HSP 2 Score: 387.882 bits (995), Expect = 4.960e-109 Identity = 218/352 (61.93%), Postives = 264/352 (75.00%), Query Frame = 3 Query: 3822 YVLRIVLKRKKITDKKLSLQSIAEKITEYFKNDIICHVPDENLDLVLRIRMLXXXXXXXXXXXXXXX--XXYXXXXXXXXXXXXXXQGIPQISKVYLSKPTTDDKKRLIINSKGDFEKVEEWILETDGTCLPKVLAERYVDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMSGVAQNLFMVGGATPMNXXXXXXXXXXXXXXXXXXXXTGFGL-AFSPSGFSEAGMSPSPGLGFSPMMSPKTPHDY 4868 YVLRI RKK+ DKK+SL++IAEKI+E+FKNDI CHV D+NL+LVLRIRMLKK D +++E + + +L ++NLILDE+ LQGIPQI+KVYLS+PTT DK + ++N +G FE +EWILETDG+CL KVLAER VD TTSNHITEIF T GIEAARNAIE EM NV+SFDGSYVNYRHL LLC++MT KG+LMS+DRHGINRQETG LARS+FEETVDIL+EAGAHA+ DPMKGVSES++ GQLA+MGTGCFDIL+N L+EAQ LP+M G+ + G +P S YN + +G AFSP+ E MSP G SP SPKTP+ Y Sbjct: 1199 YVLRIDFNRKKVIDKKMSLETIAEKISEHFKNDITCHVSDDNLELVLRIRMLKKQDNEKDESEVETIDDKSFLMKLENLILDEVTLQGIPQITKVYLSEPTTGDKLKRVVNKEGSFEIEKEWILETDGSCLQKVLAERDVDPVNTTSNHITEIFTTLGIEAARNAIEYEMNNVLSFDGSYVNYRHLGLLCDVMTQKGYLMSMDRHGINRQETGVLARSTFEETVDILLEAGAHADIDPMKGVSESVLFGQLAKMGTGCFDILINSDLLNEAQSLPVMQGIGNSFMPSGCFSP--------SSPQYQYNPMSAPFSPYGCSAFSPTNSCE--MSP----GRSPYSSPKTPNFY 1536
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000069361.1 (SMESG000069361.1) HSP 1 Score: 446.817 bits (1148), Expect = 5.313e-131 Identity = 300/905 (33.15%), Postives = 473/905 (52.27%), Query Frame = 1 Query: 373 GKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKLLVNVHD----------PKIREIMKKTEGSYRKRFDLIHEECKKVKTCNVICDESEECEKGLNTII-----RQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYAHQVVEVFKRISNEDCIIMGF-NYKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTIILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLKSLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNGT-MYPGA-----------------KFVIRENGD----RIDLKRRPDSSDIQLSYGEIVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVLPFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFL-----PSWNGVMPKPTIAKPQRLWTGKQLFSLII-PGKVNCNRTHSTHPESE-------DSGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNF-----FNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHSN-ELNSTPGRSLLQTFEEKVNMILNEARDKTGSSAQKSLSKYNSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIP-FGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLDGGFVEFQVLP 2913 KP +NGLMD R G + C TC C GHFG+I+L+ ++ G+ + I+KIL+ +C C +L+N HD P + I KK+ + +I ++ K++ C C++S K L ++ + Q KF +YS E K+ + G L + V ++F+ I + +G N K + ++I + VPP+ +RP+ + + +D +T ++++ Q +N K + + A ++ ++T + K + ++ + QRL GK GR R N+MGKRT++T+RTVI+ DP+L ++++ +P A LTF E T +N L++L+ NG YPGA + + N + ++D ++ + +L G+ V+RH+ + D V+FNRQP+LH++S + V TF N P+NADFDGDEMN+H PQ+ EA AE L K +P S P+ + +QD LTA +T +DTF N E +L++ + P+ ++P+P I KP +L++GKQL SL+I P + P+S S P +++ DT V+I N +LIMG L KK LG S + L+ D+G+ + + L G ++GI D +A R I+ + + + + K + N L S PG S+ +T E K++ L++ RD+ G + +L K NS +M + G+KGS INISQ++ CVGQQ +EGKR+ RTL ++ + P S+GFV NS+ +GL P EF FHAM GREG+IDTAVKTAETGY+QRRL+K +E + +++D TVR+ L+Q +YG DG D +E P Sbjct: 45 AKPAENGLMDQRMGTCSS-TKCVTCDREQKYCMGHFGYIDLSNYLFPFGFLKDIVKILKCICKTCGHILLNEHDVMSHEKELRKPNLTYIQKKSIRT------IIIKKSSKIRRCR-FCNDSNGSVKKLKSLSMICHKKYALKEQQKKFFEQFENYSQEIKNLLNS-GVTLLRPYDVFKLFQAIPVKHYKFLGMSNKKNIKVSNLIFKHIPVPPICIRPSAQTSSENTSRED---DITILLRM-----QIGDN---------KLHDMHSEYARMIKPDATCIRSV--KDKKVIRGMIQRLAGKKGRFRGNIMGKRTNFTSRTVISPDPSLKINEISIPEYCAMKLTFTETATAYNIAHLKKLILNGARKYPGAVAYASGIISKEPQQPMSQLKLMMNSEVMWTKLDNEKWRIEAARKLKVGDFVQRHIDSTDIVLFNRQPSLHRLSFQAFNIVVKKEKTFSFNPCCCNPFNADFDGDEMNVHFPQTFEAKAEAIELISSIKNTTSPNSGEPLTAPLQDILTAAYLLTSKDTFYNEQEFRNLILPIVKCCPPNKIVMIPRPMIMKPVKLYSGKQLMSLVISPYGTLSPDSKRVIPDSRINQIVETSSNPVDYLNPNDTLVVIHNSKLIMGQLPKKLLGGGSKLSIFFRILK----DVGDLASCQSMERLCQIALADLKSRGFSLGITDVSPSAKLRT-IQKELVEQNFAICEEFIKYYENGSLISDPGCSIEETLESKISSQLSKIRDEGGKECKTTLHKRNSPLIMAICGSKGSYINISQMVFCVGQQIIEGKRVSNISGTNRTLMYYPENCRSPMSKGFVSNSFYSGLNPIEFLFHAMSGREGLIDTAVKTAETGYMQRRLIKFLEDLAIRFDNTVRDFTGNLVQFKYGTDGFDPSKLESTYCP 916 HSP 2 Score: 92.8189 bits (229), Expect = 2.576e-18 Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 3 Query: 4233 VDSETTTSNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQLARMGTGCFDILMNFAQLDEAQCLPMMS 4649 VD T SNHI EI+E GI+AA++ I E+ V+ + RH+ LL +IM + G + R GI++ + L +SFE+T+D L+EA H + D + G+S+S+ G+ +GTG I+ N + + + P +S Sbjct: 1207 VDGINTHSNHILEIYEVLGIDAAKDMIINELNAVMGAHNLTPDIRHVMLLADIMCYTGQICGFQRSGISKSKNSVLCLASFEKTLDHLLEAAYHNQKDKLHGISDSLTFGKTTPIGTGMSTIIFNDSSEKDLRRRPTLS 1345 HSP 3 Score: 87.8113 bits (216), Expect = 8.565e-17 Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 1 Query: 3421 FYKSQVHPGEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVSRNPKTPSLTIRLLGAAAKDVEIAKKIAASLEHTTLRKLAVSSEI 3720 ++K+ + PG +G + +S+GEPATQMTL TFHFAGV++ N+T GVPR++EI+N N KTP +T+ L + AK + ++ L+ + + S++ Sbjct: 997 YFKAIIEPGTAIGVICGQSVGEPATQMTLKTFHFAGVASMNITRGVPRMQEIMNAVANIKTPIITVYLTDDVRE--SFAKTMQLKIQPVFLKNVIIQSQL 1094
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Match: SMESG000021710.1 (SMESG000021710.1) HSP 1 Score: 360.147 bits (923), Expect = 3.695e-101 Identity = 280/962 (29.11%), Postives = 444/962 (46.15%), Query Frame = 1 Query: 316 RSLSVSDACGIIYPEKTQDGKPKKNGLMDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILRSVCFKCSKL------------LVNVHDPKIR-----EIMKKTEGSYRKRFDL------IHEECKKVKTCNVICDESEECEKGLNTIIRQGCNFVQPKFRRNGLDYSMETKDSDDGKGKQPLYA---HQVVEVFKRISNEDCIIMGFN----------------YKYSRPESMILTVLAVPPMAVRPAIVMNHSGKAHDDLTHKLTEIVKVNNEIRQAEENGVASTI------ILEKENSLQYHVATLMDNESTFLPVAIQKSGRPLK------SLKQRLKGKHGRVRSNLMGKRTDYTARTVITADPNLNLDQVGVPRAIAQNLTFPERVTPFNKKFLQQLVRNG-TMYPGAKFVIRENGDRIDL--KRRP----DSSDIQLSYGE--IVERHMLNDDFVVFNRQPTLHKMSMMGHRVKVL---PFSTFRLNLSVTGPYNADFDGDEMNLHMPQSQEATAEIANLARVNKLVITPQSNRPVMSIVQDSLTACNKMTMRDTFLNAAEMMHLLMFLPSWNGV---------MPKPTIAKPQRLWTGKQLFSLI----IPGKVNCNRTHSTHPESED----SGPYKWISHADTRVLIENGQLIMGILCKKTLGSSSGSLMHIIALEQSADDIGNFFNNIQTVVNNWLLFEGHTIGIVDTLYNAATREEIKFNINKAKDDVFDTITKGHS---NELNSTPGRSLLQ--------TFEEKVNMILNEARDKTGSS---------AQKSLSKY---NSFNLMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFKQRTLPHFIKTDFGPESRGFVENSYLAGLTPTEFFFHAMGGREGIIDTAVKTAETGYIQRRLMKAMESVMVKYDATVRNQIDQLIQLRYGEDGLD 2883 R+LS + +I E GK NGL D G ++ C+ C+ + +C GHFG I ++ VYN + + K +++VCF C +L L + D I+ E MK S +++ L + C + +++ +S +CE ++ ++ + +P +R +D + + +D ++ LY + +F I E ++ N +KY + +L PPM PA VMN T + +V+ +R+ + ++ I E LQ V D SGR + L+Q++ K G RSN+MGKR ++ R+VI+ DP + LD++GVP LT+PE + P NK FL Q V NG +YPGA V + G+R + P ++ QL + I+ RH L+ D ++ NRQPTLH+ SM H +K + T R++ S YNADFDGDEMN H PQS A AE L V TP+ P+ ++QD + A KM +RD+ E + L+ ++G+ +PKP I P +LWTGKQ+ S++ IP + + P+ SG + + +D ++I +G + GI K LG S L + + N+ ++ +L++ G + I D N + K +NK + ++ K + E SL++ F K+ I + KT SS + +L + N+ LM +GAKG + N++++ +G +EGKR P RTLP F + D P SRGF + +++GL P E FF +M GR+G++DTAVKT+ +GY+QR L+K +E + V +D TVR+ + +IQ RYG DGLD Sbjct: 22 RNLSTKEITSLISIEPVL-GKGAVNGLYDSSLGSLNDREPCRNCNLSFYDCNGHFGRIEFSKLVYNPLLFDTLAKFIKAVCFYCHRLNYTQGLLESICDLSQIKDSLIKRFNDYENMKSKTLSDKQKNALKIMSSQTRKNCHQCHNKSLVFKKSRKCEITVHISAKESRDKGEPSCKRMKIDENPKIRDFKSSYSQEELYGKFTNTDTSIFPEILREHLRLLWSNESENLPLILPMLKYNNFKYPTDVFFMENMLINPPMNRLPA-VMNGDQMTESPETTNMCNVVRAEAALREIIKRKDSTAAEQYYQNIREGILELQKRVNVCYD------------SGRHRELTGSQPGLRQKIDKKDGLFRSNIMGKRVNFACRSVISPDPTIGLDEIGVPIVFLSKLTYPEPLNPMNKDFLLQCVLNGPDVYPGA--VSYQIGNRFPMVIGHNPLEVVENLKFQLQNNQTVIINRHALSGDALIMNRQPTLHRPSMQAHIIKAIHDPKAKTLRMHYSNCKAYNADFDGDEMNGHYPQSLLAQAEAKLLVNVCYQHSTPKDGSPLAGLIQDHIIAGTKMCLRDSTFTRNECLDLV-----YHGLHNSNQREFKLPKPAIIFPNQLWTGKQILSIVLKNSIPAGLELPNISCSEPKKNTMWRISGDEQKLKLSDVELIIIDGYICTGIFDKVHLGPSQKGLCSDLRELYGPEVALKILTNLSRLLTRYLVYTGFSTSIKDGFLNESGECARKNILNKIRSIGSTSVGKSFNVPLMEFRGEKATSLMEFAQFDKSDKFRNKMTEI--DTNFKTLSSNYIHQLVETCKNNLREKFPDNNLLLMCQTGAKGGESNVTKIAIALGAIEIEGKRCPLTVGGRTLPSFKRYDLDPVSRGFCVSRFMSGLKPQELFFESMAGRDGLVDTAVKTSTSGYLQRCLIKHLEDITVCHDGTVRDNMHNIIQFRYGYDGLD 960 HSP 2 Score: 77.411 bits (189), Expect = 1.041e-13 Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 3391 EWIIGEIRNIFYKSQVHP-GEMVGSLAAESLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINV-SRNPKTPSLTIRLLGA 3633 E ++ EI + + + P GE VG LAA+S+GEP+TQMTLNTFH AG S NVTLG+PRL+EI+ + S KTPS+ + +L Sbjct: 1025 ENLLREIIAVKSEYSICPNGEAVGLLAAQSVGEPSTQMTLNTFHNAGQSEMNVTLGIPRLREILMLGSDKIKTPSMDVPILAC 1107 HSP 3 Score: 73.1738 bits (178), Expect = 2.022e-12 Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 3 Query: 4254 SNHITEIFETFGIEAARNAIEAEMTNVISFDGSYVNYRHLALLCEIMTHKGFLMSIDRHGINRQETGALARSSFEETVDILMEAGAHAECDPMKGVSESIMLGQL-ARMGTGCFDILM 4604 SN+I ++ + +GIEAA + IE E+ V VN RHL L+ + +TH G + + +RH + + L R+SFE + +++E + D +K + +IM GQL + +GT D+LM Sbjct: 1375 SNNIIKMSKLYGIEAAMSCIENEIKTVFKSYNIDVNSRHLRLIADFLTHSGKVGAFNRHMMTNH-SSPLQRASFETALTVIIEMLTYGTVDYIKSPTSNIMFGQLVSNIGTNAMDLLM 1491 The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 3
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase subunit vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30023097 ID=SMED30023097|Name=DNA-directed RNA polymerase subunit|organism=Schmidtea mediterranea sexual|type=transcript|length=5923bpback to top protein sequence of SMED30023097-orf-1 >SMED30023097-orf-1 ID=SMED30023097-orf-1|Name=SMED30023097-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=647bp MLKKDDEKEEEPDEMEDRKYLELIDNLILDEICLQGIPQISKVYLSKPTTback to top protein sequence of SMED30023097-orf-2 >SMED30023097-orf-2 ID=SMED30023097-orf-2|Name=SMED30023097-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1145bp MDPRQGPMDKYSMCQTCSGNVSECPGHFGHINLARPVYNIGYKEKIIKILback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|