SMED30023090

Overview
NameSMED30023090
Smed IDSMED30023090
Length (bp)3210
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30023090 (SMED30023090) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30023090 (SMED30023090) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30023090 (SMED30023090) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30023090 (SMED30023090) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30023090

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30023090SMESG000012986.1 Contig5269GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30023090SMESG000021608.1 Contig5269GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
gutSMED30023090SMESG000021608.1 dd_Smed_v4_2260_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30023090SMESG000021608.1 dd_Smed_v4_2260_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023090SMESG000021608.1 dd_Smed_v4_2260_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023090SMESG000021608.1 dd_Smed_v6_2260_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SMED30023090 vs. Planmine SMEST
Match: SMESG000021608.1 (SMESG000021608.1)

HSP 1 Score: 1590.09 bits (4116), Expect = 0.000e+0
Identity = 1006/1014 (99.21%), Postives = 1008/1014 (99.41%), Query Frame = 2
Query:   71 NINLMXXXXXXXXXXXXXXXXXXFTGNKEVIKAGVGDAXXXXXXXXXXXXXXXXXLKEQSESDRQRKLAEIMESQKLSNELRQKQQMXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXPLRAQVXXXXXXXXXXXPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQVGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTNNTTEEVXXXXXXXXXXXXKNFAQSPEIPAPILGEEEAYKVKLAEQRRXXXXXXXXXXXXXXXXXXXXXXXXXLEKKRIEEETRKFMXXXXXXXXXXXXXXXXXXXXXXXXXXSDRKKKEDAVXXXXXXXXXXXXXADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQKKLXXXXXXXXXXXXXXXXXQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPXXXXXXXXXXXXXLPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 3112
            NINLMEDKDDENLNRDLNESNNNFTGNKEVIKAGVGDAESSHSEIIESREDRIKRLKEQSESDRQRKLAEIMESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQ GLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSE TNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVR+LEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGI NSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQ KLNDEEKANEN+ENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRP DDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNG HHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS
Sbjct:    4 NINLMEDKDDENLNRDLNESNNNFTGNKEVIKAGVGDAESSHSEIIESREDRIKRLKEQSESDRQRKLAEIMESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQAGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEQTNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVRELEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGITNSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQTKLNDEEKANENKENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPVDDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGGHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 1017          
BLAST of SMED30023090 vs. Planmine SMEST
Match: SMESG000021608.1 (SMESG000021608.1)

HSP 1 Score: 1585.85 bits (4105), Expect = 0.000e+0
Identity = 983/991 (99.19%), Postives = 985/991 (99.39%), Query Frame = 2
Query:  140 FTGNKEVIKAGVGDAXXXXXXXXXXXXXXXXXLKEQSESDRQRKLAEIMESQKLSNELRQKQQMXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXPLRAQVXXXXXXXXXXXPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQVGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTNNTTEEVXXXXXXXXXXXXKNFAQSPEIPAPILGEEEAYKVKLAEQRRXXXXXXXXXXXXXXXXXXXXXXXXXLEKKRIEEETRKFMXXXXXXXXXXXXXXXXXXXXXXXXXXSDRKKKEDAVXXXXXXXXXXXXXADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQKKLXXXXXXXXXXXXXXXXXQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPXXXXXXXXXXXXXLPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 3112
            FTGNKEVIKAGVGDAESSHSEIIESREDRIKRLKEQSESDRQRKLAEIMESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQ GLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSE TNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVR+LEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGI NSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQ KLNDEEKANEN+ENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRP DDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNG HHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS
Sbjct:   20 FTGNKEVIKAGVGDAESSHSEIIESREDRIKRLKEQSESDRQRKLAEIMESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQAGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEQTNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVRELEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGITNSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQTKLNDEEKANENKENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPVDDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGGHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 1010          
BLAST of SMED30023090 vs. Planmine SMEST
Match: SMESG000021608.1 (SMESG000021608.1)

HSP 1 Score: 1528.46 bits (3956), Expect = 0.000e+0
Identity = 935/943 (99.15%), Postives = 937/943 (99.36%), Query Frame = 2
Query:  284 MESQKLSNELRQKQQMXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXPLRAQVXXXXXXXXXXXPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQVGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTNNTTEEVXXXXXXXXXXXXKNFAQSPEIPAPILGEEEAYKVKLAEQRRXXXXXXXXXXXXXXXXXXXXXXXXXLEKKRIEEETRKFMXXXXXXXXXXXXXXXXXXXXXXXXXXSDRKKKEDAVXXXXXXXXXXXXXADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQKKLXXXXXXXXXXXXXXXXXQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPXXXXXXXXXXXXXLPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 3112
            MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQ GLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSE TNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVR+LEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGI NSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQ KLNDEEKANEN+ENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRP DDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNG HHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS
Sbjct:    1 MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQAGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEQTNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVRELEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGITNSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQTKLNDEEKANENKENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPVDDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGGHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 943          
BLAST of SMED30023090 vs. Planmine SMEST
Match: SMESG000021608.1 (SMESG000021608.1)

HSP 1 Score: 1117.06 bits (2888), Expect = 0.000e+0
Identity = 673/681 (98.83%), Postives = 675/681 (99.12%), Query Frame = 2
Query: 1070 YPSIPCRIDQVGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTNNTTEEVXXXXXXXXXXXXKNFAQSPEIPAPILGEEEAYKVKLAEQRRXXXXXXXXXXXXXXXXXXXXXXXXXLEKKRIEEETRKFMXXXXXXXXXXXXXXXXXXXXXXXXXXSDRKKKEDAVXXXXXXXXXXXXXADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQKKLXXXXXXXXXXXXXXXXXQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPXXXXXXXXXXXXXLPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 3112
            YPSIPCRIDQ GLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSE TNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVR+LEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGI NSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQ KLNDEEKANEN+ENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRP DDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNG HHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS
Sbjct:  109 YPSIPCRIDQAGLVREIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEQTNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVRELEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGITNSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQTKLNDEEKANENKENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPVDDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGGHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 789          

HSP 2 Score: 77.0258 bits (188), Expect = 4.805e-14
Identity = 118/145 (81.38%), Postives = 122/145 (84.14%), Query Frame = 2
Query:  284 MESQKLSNELRQKQQMXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXPLRAQVXXXXXXXXXXXPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDR---VSNYVSPAAGRACSSN 709
            MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEK      Y   P  C +D+   V    SP + R+  SN
Sbjct:    1 MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEK------YPSIP--CRIDQAGLVREIPSPMSPRSIKSN 137          
BLAST of SMED30023090 vs. Planmine SMEST
Match: SMESG000021608.1 (SMESG000021608.1)

HSP 1 Score: 948.732 bits (2451), Expect = 0.000e+0
Identity = 600/619 (96.93%), Postives = 605/619 (97.74%), Query Frame = 2
Query: 1256 SQHHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTNNTTEEVXXXXXXXXXXXXKNFAQSPEIPAPILGEEEAYKVKLAEQRRXXXXXXXXXXXXXXXXXXXXXXXXXLEKKRIEEETRKFMXXXXXXXXXXXXXXXXXXXXXXXXXXSDRKKKEDAVXXXXXXXXXXXXXADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQKKLXXXXXXXXXXXXXXXXXQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPXXXXXXXXXXXXXLPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 3112
            S  H +L  E++  N  KETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSE TNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVR+LEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGI NSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQ KLNDEEKANEN+ENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRP DDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNG HHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS
Sbjct:  247 SSAHTTLHNEATTGNVCKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPATKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKSEKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEQTNNTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAREKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQQLEIEKQRLLEESDRKKKEDAVRELEEKRQEELRLADEERMIRKRKLEMIMRRVKQPDGANLPSMEESLNESGITNSLSTNEKNQDSVIELTLQDNSLKPFDSSTRENSPQRTVAWSGENCDEDQTKLNDEEKANENKENDSNENQMEISNVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQQPKFKSKLLNSMLNKGRLNSSRPVDDKINSSSVDGILGKRNSLYVPSIITDDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPNGGHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECLPVAPPSMPPHSHALELS 865          

HSP 2 Score: 424.476 bits (1090), Expect = 6.702e-133
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 2
Query:  284 MESQKLSNELRQKQQMXXXXXXXXXXXXXXXXXXGVXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXPLRAQVXXXXXXXXXXXPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNV 1069
            MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNV
Sbjct:    1 MESQKLSNELRQKQQMERRKKIEELKLREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQVMSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDRVSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGHFIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSWWAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNV 262          
The following BLAST results are available for this feature:
BLAST of SMED30023090 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023090 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000021608.10.000e+099.21SMESG000021608.1[more]
SMESG000021608.10.000e+099.19SMESG000021608.1[more]
SMESG000021608.10.000e+099.15SMESG000021608.1[more]
SMESG000021608.14.805e-1498.83SMESG000021608.1[more]
SMESG000021608.16.702e-13396.93SMESG000021608.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023090 ID=SMED30023090|Name=SMED30023090|organism=Schmidtea mediterranea sexual|type=transcript|length=3210bp
CCAATAATTGTTCTATTTTACAATTGTGGAAGTATTTGCTTTTTTTTAAA
AATTATTTTAGATGGATTTTAATATAAATTTAATGGAAGATAAAGATGAT
GAAAACTTGAATCGTGATTTAAATGAGTCAAATAATAACTTTACCGGAAA
TAAGGAAGTGATCAAGGCAGGCGTTGGAGATGCGGAGTCATCTCATTCTG
AAATTATCGAGTCACGGGAAGATCGTATCAAACGACTCAAAGAGCAATCT
GAATCGGATCGGCAACGTAAACTCGCAGAAATAATGGAATCTCAAAAACT
GTCCAACGAATTGCGACAGAAACAACAGATGGAGCGACGGAAAAAAATTG
AAGAATTGAAACTAAGGGAAGAGGAACGCCGAAAAGGAGTCGAACAGAGA
CGACGGGAATTGGATGAAAGGGAAAAGGAAAAGAATGAAAACATTCAAAA
GCGAAATAAAGAGCGAGAGGAGAGAGCAGCGAGGAATCAGAAACCGCTGC
GAGCGCAAGTTATGTCGAGCAGCATGTCACAATCAATGATTAGCCCTCGA
CAGAACCGGATGACGGCATCAGTGCACAGCACCGGCACGAGCTCGGGATC
TGAGAAATGTATGAGAAAAGCAAGTTATGGCCGCTGGCCGTCGAGTTGTG
ATGTTGATCGAGTTTCGAATTATGTTTCACCAGCTGCTGGCAGGGCTTGT
TCATCTAATAAATCACGGCGCAGCGCTAGTAACACGGGAGGCCTTGGAAA
CCGAGGCGGCGAGAAACACAGAACTCAGCCGCCGGAAGGTTTCTTGGAAA
TCGACGGCCATTTCATTCCCGCTAGCACTCGTCACGTCGGCTGCTTTCTG
CCTTATAAGGGTCCTCAGTACCGAGTTAAGGGGGTGCTGGCATGGGGACC
GCCGCCCCCAGGCCCGTCGCAACATCAAACGATTAGCGACCGGGGCACTG
CCGTTTCCTGGTGGGCTGGCCTTGACACTGGCCAATCGTCGTCCTCAAGA
CATGGCGCACAATTCAGGGCCAGCTCGGCTCACACTACACTGCACAACGA
GGCTACCACTGGCAACGTTTATCCCTCAATCCCATGTCGAATCGATCAAG
TGGGTCTCGTCAGAGAAATCCCTAGTCCGATGTCACCACGTTCGATTAAA
AGCAACATTTTTTCTCTCCAACTGGACACGAAAGATTTCAAAGGGATGTT
GTCGACTCGTAAGCATGTAAATCAAACCCCACCTGCTAAAATGATGAAAG
CATTTTCCCAGCATCATATATCTTTAAAGATTGAGTCGTCTGACCGGAAT
TTCGGCAAGGAAACTGTGTCATCCAGAAGCAAGAATCAATCCGCTTCAAG
GAATAATGCCTCTAGTACTGTGACTGCTAGTCCAGGCAATGTAACTAATG
TGAAGCCAGCAACAAAGAAACCTAAGGAAGATAAGCTGCTATTTGAAAGA
CTGTCAAAACCTCGAAGTGGATCACAGCCTCCAAAAATGATACAAAAAGA
GCCAGCAGAGTCTACAGTCAAGATCATGTCGACGTCAGTCAGCAAACAAA
CGACGAAGTCTGAAAAGCCACCAAACAAAGACAAACGAAAATTGTCCTCT
TCTGTTGCTTCGTTGGAACCGAATGTCAAATCGAAGGAGTCAATTGAGCT
CACTACAACCCAAATTGTGGTGGATGAAGTCAAAGATCAAGACACATCAG
AGCCAACAAACAACACAACAGAGGAAGTTTCATCCGCCAGCAATTCAGGC
TCTCGCAGAGGCAGTAAAAATTTTGCACAGTCTCCCGAAATTCCTGCTCC
AATATTAGGAGAGGAAGAGGCATATAAAGTGAAATTAGCAGAGCAACGAC
GGATAGCCCGAGAGAAGAAAGAAGAACTGGAACAAGAAAAACGGAGAATA
GAAGAAGAAGCTCGTCAAAAAGCTGCTTTGGAAAAGAAAAGAATAGAAGA
GGAAACTCGAAAATTTATGGAAGAAGAGGCACAAAGAGCAAAACTTTTAG
AAGAAGAGCAACAACTTGAAATAGAGAAACAGAGATTATTAGAGGAATCT
GATAGGAAAAAGAAAGAGGATGCTGTACGTAAATTGGAGGAGAAAAGACA
AGAGGAATTGCGATTGGCAGACGAAGAGCGTATGATACGAAAACGTAAAC
TGGAAATGATAATGAGACGAGTGAAACAACCAGATGGAGCTAATTTACCT
TCAATGGAAGAAAGTTTAAATGAATCTGGCATAGCAAATTCATTATCTAC
AAATGAAAAGAATCAAGACTCTGTAATAGAATTGACGCTGCAGGACAATA
GTTTGAAGCCGTTTGATAGTAGCACTCGTGAAAATTCTCCTCAGAGGACT
GTTGCGTGGAGTGGAGAGAATTGTGATGAGGACCAAAAAAAATTGAATGA
TGAAGAGAAAGCAAATGAAAATGAAGAAAATGATTCGAATGAAAATCAAA
TGGAAATTAGTAATGTGTCGCGTAGCAACAGCCCAGAAGTTATATCAGAT
ACAGTGCTGAATCTTATCGGTCCCGACTCGGTAAACAGTGGAAATTCGCT
GTCTGCGTCGTTTCCCCTAGCTCCTCAATCAATAATCACAAGCAACACTG
CCGATGAACAGCAGCCAAAATTCAAATCGAAATTATTGAATTCTATGCTC
AATAAAGGCCGTCTCAATTCCAGCAGGCCCCAAGATGATAAAATCAATTC
ATCGTCCGTTGACGGAATCCTGGGCAAACGCAACAGCCTTTATGTTCCTT
CAATCATCACTGACGATTCTAGCTCTGATAGCGTCATCCTGCCTCACAGC
AAATCATACGATTCAGAATTGGATCATTTGACGGCTATCAACGGTATTAA
TCATAATCAAGCAATAAATAGTCTTTCCAAAGAATCCGAAAGTAATATTC
ACATACCAAATGGAAGTCATCATCATAACCATCTGGATACTTACAATGAA
ATCACTCTATCTAACTCCACCAGTAATATAGATCCTCCTAGGTTATCTCT
GGATAAATTAGAGATCCGCTCAGAATCCACTTGCTCACAGCTCAGCTCAA
ACGAGTGTCTACCTGTTGCACCGCCGTCAATGCCACCTCACAGTCATGCA
TTAGAGTTATCGTAATTTACACTGCGGACAGAATATCCATTTTCTTGACA
TCTTTGATTTCAATATATTTATAAATAGCTTCTGCATTCGTTGTTCGCAC
AATGCGGCAC
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protein sequence of SMED30023090-orf-1

>SMED30023090-orf-1 ID=SMED30023090-orf-1|Name=SMED30023090-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1018bp
MDFNINLMEDKDDENLNRDLNESNNNFTGNKEVIKAGVGDAESSHSEIIE
SREDRIKRLKEQSESDRQRKLAEIMESQKLSNELRQKQQMERRKKIEELK
LREEERRKGVEQRRRELDEREKEKNENIQKRNKEREERAARNQKPLRAQV
MSSSMSQSMISPRQNRMTASVHSTGTSSGSEKCMRKASYGRWPSSCDVDR
VSNYVSPAAGRACSSNKSRRSASNTGGLGNRGGEKHRTQPPEGFLEIDGH
FIPASTRHVGCFLPYKGPQYRVKGVLAWGPPPPGPSQHQTISDRGTAVSW
WAGLDTGQSSSSRHGAQFRASSAHTTLHNEATTGNVYPSIPCRIDQVGLV
REIPSPMSPRSIKSNIFSLQLDTKDFKGMLSTRKHVNQTPPAKMMKAFSQ
HHISLKIESSDRNFGKETVSSRSKNQSASRNNASSTVTASPGNVTNVKPA
TKKPKEDKLLFERLSKPRSGSQPPKMIQKEPAESTVKIMSTSVSKQTTKS
EKPPNKDKRKLSSSVASLEPNVKSKESIELTTTQIVVDEVKDQDTSEPTN
NTTEEVSSASNSGSRRGSKNFAQSPEIPAPILGEEEAYKVKLAEQRRIAR
EKKEELEQEKRRIEEEARQKAALEKKRIEEETRKFMEEEAQRAKLLEEEQ
QLEIEKQRLLEESDRKKKEDAVRKLEEKRQEELRLADEERMIRKRKLEMI
MRRVKQPDGANLPSMEESLNESGIANSLSTNEKNQDSVIELTLQDNSLKP
FDSSTRENSPQRTVAWSGENCDEDQKKLNDEEKANENEENDSNENQMEIS
NVSRSNSPEVISDTVLNLIGPDSVNSGNSLSASFPLAPQSIITSNTADEQ
QPKFKSKLLNSMLNKGRLNSSRPQDDKINSSSVDGILGKRNSLYVPSIIT
DDSSSDSVILPHSKSYDSELDHLTAINGINHNQAINSLSKESESNIHIPN
GSHHHNHLDTYNEITLSNSTSNIDPPRLSLDKLEIRSESTCSQLSSNECL
PVAPPSMPPHSHALELS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0000101muscle cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 49..69
NoneNo IPR availableCOILSCoilCoilcoord: 771..798
NoneNo IPR availableCOILSCoilCoilcoord: 589..692
NoneNo IPR availableCOILSCoilCoilcoord: 80..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 713..732
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 749..807
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 539..580
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..499
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 704..732
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 773..793
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 657..680
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 450..464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 749..772
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 419..447
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..571
NoneNo IPR availablePANTHERPTHR15073MICROTUBULE-ASSOCIATED PROTEINcoord: 11..822