SMED30023035

Overview
NameSMED30023035
Smed IDSMED30023035
Length (bp)632
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30023035 (SMED30023035) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30023035 (SMED30023035) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30023035 (SMED30023035) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30023035 (SMED30023035) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30023035

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30023035SMESG000050427.1 SmedASXL_017551SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017		whole organism asexual adult RNA-sequencing evidence
X1 cellSMED30023035SMESG000050427.1 SmedASXL_017551SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30023035SMESG000050427.1 SmedASXL_017551SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30023035SMESG000050427.1 Contig20539newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023035SMESG000050427.1 Contig20539uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023035SMESG000050427.1 Contig37647newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023035SMESG000050427.1 Contig37647uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neoblastSMED30023035SMESG000050427.1 dd_Smed_v6_3777_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30023035SMESG000050427.1 SMED30023035smed_20140614PMID:27523733
Lei et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30023035SMESG000050427.1 SMED_29717_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Alignments
SMED30023035 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002089:104484..105115 +3151
v31.007011:16844..17475 -3052
v31.002089:104106..104981 +649
Homology
[Close]
BLAST of SMED30023035 vs. Planmine SMEST
Match: SMESG000050427.1 (SMESG000050427.1)

HSP 1 Score: 371.318 bits (952), Expect = 9.663e-119
Identity = 199/210 (94.76%), Postives = 204/210 (97.14%), Query Frame = 3 
Query:    3 RGKKSRKSTLPVPLNLNKSGKLKRPYADKTDTPPSKRLLISTLSKMNNAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            RG+KSRKST+PVPLNLNKSGKLKRPYADK DT  SKRLLISTLSKMN+AKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKK RGRPKKQ NESVNYIGS+RSENAIDLCSVSIANDQISNSVIL+NVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKK RGRPKKQVNESVDAQSAL
Sbjct: 2589 RGRKSRKSTVPVPLNLNKSGKLKRPYADKADTLQSKRLLISTLSKMNDAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKTRGRPKKQVNESVNYIGSLRSENAIDLCSVSIANDQISNSVILQNVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKIRGRPKKQVNESVDAQSAL 2798

HSP 2 Score: 107.071 bits (266), Expect = 1.213e-26
Identity = 75/133 (56.39%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:  240 SLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIAND--QISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            S+ + K  RGR K Q NESVN   ++ SE           ND  +  NS++       E EN VV  +K+RGRPKKQV ESV+ QS  ESET DG  DK+SI+EKENS VITKKTRGRPKKQVNESVDAQS L
Sbjct: 2863 SVVITKNTRGRQKIQINESVNAQSALESE----------TNDRNEDKNSLV-------EKENLVVITKKTRGRPKKQVNESVDAQSALESETFDGYGDKNSIMEKENSAVITKKTRGRPKKQVNESVDAQSVL 2978

HSP 3 Score: 92.4337 bits (228), Expect = 1.571e-21
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:  249 VVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESV 614
            + KK RGRPKKQ NESV+   ++ SE   D      +  +  NS ++               +K+RGRPKKQV ESV+ QSV ESETNDG  DK+S++EK+NS VI KKTRGR KK + E++
Sbjct: 2911 ITKKTRGRPKKQVNESVDAQSALESE-TFDGYGDKNSIMEKENSAVI--------------TKKTRGRPKKQVNESVDAQSVLESETNDGYGDKNSVLEKDNSAVIIKKTRGRQKKPIIENL 3017
[Close]
BLAST of SMED30023035 vs. Planmine SMEST
Match: SMESG000050427.1 (SMESG000050427.1)

HSP 1 Score: 371.318 bits (952), Expect = 1.075e-118
Identity = 199/210 (94.76%), Postives = 204/210 (97.14%), Query Frame = 3 
Query:    3 RGKKSRKSTLPVPLNLNKSGKLKRPYADKTDTPPSKRLLISTLSKMNNAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            RG+KSRKST+PVPLNLNKSGKLKRPYADK DT  SKRLLISTLSKMN+AKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKK RGRPKKQ NESVNYIGS+RSENAIDLCSVSIANDQISNSVIL+NVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKK RGRPKKQVNESVDAQSAL
Sbjct: 2586 RGRKSRKSTVPVPLNLNKSGKLKRPYADKADTLQSKRLLISTLSKMNDAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKTRGRPKKQVNESVNYIGSLRSENAIDLCSVSIANDQISNSVILQNVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKIRGRPKKQVNESVDAQSAL 2795

HSP 2 Score: 107.071 bits (266), Expect = 1.248e-26
Identity = 75/133 (56.39%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:  240 SLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIAND--QISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            S+ + K  RGR K Q NESVN   ++ SE           ND  +  NS++       E EN VV  +K+RGRPKKQV ESV+ QS  ESET DG  DK+SI+EKENS VITKKTRGRPKKQVNESVDAQS L
Sbjct: 2860 SVVITKNTRGRQKIQINESVNAQSALESE----------TNDRNEDKNSLV-------EKENLVVITKKTRGRPKKQVNESVDAQSALESETFDGYGDKNSIMEKENSAVITKKTRGRPKKQVNESVDAQSVL 2975

HSP 3 Score: 92.4337 bits (228), Expect = 1.616e-21
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:  249 VVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESV 614
            + KK RGRPKKQ NESV+   ++ SE   D      +  +  NS ++               +K+RGRPKKQV ESV+ QSV ESETNDG  DK+S++EK+NS VI KKTRGR KK + E++
Sbjct: 2908 ITKKTRGRPKKQVNESVDAQSALESE-TFDGYGDKNSIMEKENSAVI--------------TKKTRGRPKKQVNESVDAQSVLESETNDGYGDKNSVLEKDNSAVIIKKTRGRQKKPIIENL 3014
[Close]
BLAST of SMED30023035 vs. Planmine SMEST
Match: SMESG000050427.1 (SMESG000050427.1)

HSP 1 Score: 371.318 bits (952), Expect = 1.085e-118
Identity = 199/210 (94.76%), Postives = 204/210 (97.14%), Query Frame = 3 
Query:    3 RGKKSRKSTLPVPLNLNKSGKLKRPYADKTDTPPSKRLLISTLSKMNNAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            RG+KSRKST+PVPLNLNKSGKLKRPYADK DT  SKRLLISTLSKMN+AKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKK RGRPKKQ NESVNYIGS+RSENAIDLCSVSIANDQISNSVIL+NVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKK RGRPKKQVNESVDAQSAL
Sbjct: 2594 RGRKSRKSTVPVPLNLNKSGKLKRPYADKADTLQSKRLLISTLSKMNDAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKTRGRPKKQVNESVNYIGSLRSENAIDLCSVSIANDQISNSVILQNVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKIRGRPKKQVNESVDAQSAL 2803

HSP 2 Score: 107.071 bits (266), Expect = 1.213e-26
Identity = 75/133 (56.39%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:  240 SLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIAND--QISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            S+ + K  RGR K Q NESVN   ++ SE           ND  +  NS++       E EN VV  +K+RGRPKKQV ESV+ QS  ESET DG  DK+SI+EKENS VITKKTRGRPKKQVNESVDAQS L
Sbjct: 2868 SVVITKNTRGRQKIQINESVNAQSALESE----------TNDRNEDKNSLV-------EKENLVVITKKTRGRPKKQVNESVDAQSALESETFDGYGDKNSIMEKENSAVITKKTRGRPKKQVNESVDAQSVL 2983

HSP 3 Score: 92.4337 bits (228), Expect = 1.571e-21
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:  249 VVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESV 614
            + KK RGRPKKQ NESV+   ++ SE   D      +  +  NS ++               +K+RGRPKKQV ESV+ QSV ESETNDG  DK+S++EK+NS VI KKTRGR KK + E++
Sbjct: 2916 ITKKTRGRPKKQVNESVDAQSALESE-TFDGYGDKNSIMEKENSAVI--------------TKKTRGRPKKQVNESVDAQSVLESETNDGYGDKNSVLEKDNSAVIIKKTRGRQKKPIIENL 3022
[Close]
BLAST of SMED30023035 vs. Planmine SMEST
Match: SMESG000050427.1 (SMESG000050427.1)

HSP 1 Score: 371.318 bits (952), Expect = 1.096e-118
Identity = 199/210 (94.76%), Postives = 204/210 (97.14%), Query Frame = 3 
Query:    3 RGKKSRKSTLPVPLNLNKSGKLKRPYADKTDTPPSKRLLISTLSKMNNAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            RG+KSRKST+PVPLNLNKSGKLKRPYADK DT  SKRLLISTLSKMN+AKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKK RGRPKKQ NESVNYIGS+RSENAIDLCSVSIANDQISNSVIL+NVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKK RGRPKKQVNESVDAQSAL
Sbjct: 2596 RGRKSRKSTVPVPLNLNKSGKLKRPYADKADTLQSKRLLISTLSKMNDAKYSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKTRGRPKKQVNESVNYIGSLRSENAIDLCSVSIANDQISNSVILQNVNKVENENSVVTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKIRGRPKKQVNESVDAQSAL 2805

HSP 2 Score: 107.071 bits (266), Expect = 1.236e-26
Identity = 75/133 (56.39%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:  240 SLDVVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIAND--QISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESVDAQSAL 632
            S+ + K  RGR K Q NESVN   ++ SE           ND  +  NS++       E EN VV  +K+RGRPKKQV ESV+ QS  ESET DG  DK+SI+EKENS VITKKTRGRPKKQVNESVDAQS L
Sbjct: 2870 SVVITKNTRGRQKIQINESVNAQSALESE----------TNDRNEDKNSLV-------EKENLVVITKKTRGRPKKQVNESVDAQSALESETFDGYGDKNSIMEKENSAVITKKTRGRPKKQVNESVDAQSVL 2985

HSP 3 Score: 92.4337 bits (228), Expect = 1.586e-21
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:  249 VVKKIRGRPKKQENESVNYIGSIRSENAIDLCSVSIANDQISNSVILXXXXXXXXXXXXXTIRKSRGRPKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQVNESV 614
            + KK RGRPKKQ NESV+   ++ SE   D      +  +  NS ++               +K+RGRPKKQV ESV+ QSV ESETNDG  DK+S++EK+NS VI KKTRGR KK + E++
Sbjct: 2918 ITKKTRGRPKKQVNESVDAQSALESE-TFDGYGDKNSIMEKENSAVI--------------TKKTRGRPKKQVNESVDAQSVLESETNDGYGDKNSVLEKDNSAVIIKKTRGRQKKPIIENL 3024
The following BLAST results are available for this feature:
BLAST of SMED30023035 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30023035 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000050427.19.663e-11994.76SMESG000050427.1[more]
SMESG000050427.11.075e-11894.76SMESG000050427.1[more]
SMESG000050427.11.085e-11894.76SMESG000050427.1[more]
SMESG000050427.11.096e-11894.76SMESG000050427.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023035 ID=SMED30023035|Name=SMED30023035|organism=Schmidtea mediterranea sexual|type=transcript|length=632bp
ACCGTGGAAAAAAGTCTCGAAAATCCACACTTCCAGTTCCGTTAAATCTT
AATAAATCAGGTAAGCTTAAAAGACCATATGCAGACAAGACAGACACCCC
ACCATCAAAGAGATTATTAATATCGACCCTAAGTAAAATGAATAATGCCA
AATATAGTGAAATCAAACCAATAGATCATGTAGATCTGAATATGGCAGTA
ATTAATCAAGAGAATTTAGAAGCACAACGTGAATTAGAAAGTTTAGATGT
AGTCAAGAAAATTCGAGGTCGACCAAAGAAACAAGAGAATGAGAGTGTTA
ATTATATTGGCTCAATAAGAAGCGAAAACGCTATTGATTTATGTTCAGTT
TCGATTGCTAATGATCAAATCAGTAATTCAGTGATTCTTAAAAATGTTAA
TAAAGTTGAAAACGAGAATTCAGTTGTTACTATAAGGAAAAGTCGAGGTC
GACCAAAAAAACAAGTCACTGAAAGTGTGAACGTACAAAGTGTATTTGAA
AGTGAAACTAATGATGGAAATTGGGATAAAAGTAGCATTGTAGAAAAAGA
GAATTCAGTCGTAATCACAAAGAAAACTCGTGGAAGACCGAAAAAACAAG
TCAACGAAAGTGTGGATGCACAAAGTGCTTTG
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protein sequence of SMED30023035-orf-1

>SMED30023035-orf-1 ID=SMED30023035-orf-1|Name=SMED30023035-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=210bp
RGKKSRKSTLPVPLNLNKSGKLKRPYADKTDTPPSKRLLISTLSKMNNAK
YSEIKPIDHVDLNMAVINQENLEAQRELESLDVVKKIRGRPKKQENESVN
YIGSIRSENAIDLCSVSIANDQISNSVILKNVNKVENENSVVTIRKSRGR
PKKQVTESVNVQSVFESETNDGNWDKSSIVEKENSVVITKKTRGRPKKQV
NESVDAQSAL
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000429neoblast
PLANA:0002075pigment cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifPRINTSPR00929ATHOOKcoord: 85..95
score: 58.33
coord: 188..198
score: 56.44
coord: 143..154
score: 45.49
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 85..97
e-value: 0.57
score: 16.6
coord: 190..202
e-value: 1.9
score: 13.6
coord: 145..157
e-value: 3.3
score: 12.4
IPR017956AT hook, DNA-binding motifPFAMPF02178AT_hookcoord: 85..96
e-value: 0.08
score: 12.9
coord: 190..201
e-value: 0.6
score: 10.2
coord: 146..155
e-value: 0.55
score: 10.3