LIM/homeobox protein

Overview


Name	LIM/homeobox protein
Smed ID	SMED30023015
Length (bp)	1133

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of LIM/homeobox protein (SMED30023015) t-SNE clustered cells

Violin plots show distribution of expression levels for LIM/homeobox protein (SMED30023015) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of LIM/homeobox protein (SMED30023015) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for LIM/homeobox protein (SMED30023015) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30023015

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
pigment cell	SMED30023015	SMESG000001774.1	SmedASXL_011745	SmedAsxl_ww_GCZZ01	PMID:29158443 He et al., 2017
gut	SMED30023015	SMESG000001774.1	dd_Smed_v4_8190_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30023015	SMESG000001774.1	dd_Smed_v4_8190_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30023015	SMESG000001774.1	Contig42891	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30023015	SMESG000001774.1	Contig42891	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
tail region	SMED30023015	SMESG000001774.1	dd_Smed_v6_8190_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of LIM/homeobox protein vs. Ensembl Human
Match: LHX9 (LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222])

HSP 1 Score: 199.519 bits (506), Expect = 8.697e-60
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   61 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 332

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BLAST of LIM/homeobox protein vs. Ensembl Human
Match: LHX9 (LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222])

HSP 1 Score: 199.134 bits (505), Expect = 1.324e-59
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   70 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 341

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BLAST of LIM/homeobox protein vs. Ensembl Human
Match: LHX2 (LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594])

HSP 1 Score: 191.045 bits (484), Expect = 2.401e-56
Identity = 102/291 (35.05%), Postives = 160/291 (54.98%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFSGIQSDFR-------------------LGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-------PRH--QDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +      F+                          LGL     +      + + R+  G   D    N +         H  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:   42 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 332

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Human
Match: LHX2 (LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594])

HSP 1 Score: 184.111 bits (466), Expect = 1.302e-53
Identity = 102/299 (34.11%), Postives = 160/299 (53.51%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYF--------RIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFSGIQSDFR-------------------LGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-------PRH--QDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+        R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +      F+                          LGL     +      + + R+  G   D    N +         H  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:   40 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYSPSLHGPYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 338

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Human
Match: LHX9 (LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222])

HSP 1 Score: 169.474 bits (428), Expect = 4.606e-49
Identity = 88/245 (35.92%), Postives = 135/245 (55.10%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQ 795
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQ
Sbjct:   61 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303

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BLAST of LIM/homeobox protein vs. Ensembl Celegans
Match: ttx-3 (LIM/homeobox protein ttx-3 [Source:UniProtKB/Swiss-Prot;Acc:G5EE86])

HSP 1 Score: 169.859 bits (429), Expect = 5.149e-49
Identity = 91/244 (37.30%), Postives = 137/244 (56.15%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNG-NILFCQ---DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C  C   I DK     D   +H +CL+C +C+   + ++ CY R+G F C+ D+ + YQ + C KC+  +  ++MVMK    +FH  CF+C +CG +LN G+Y+ ++    L+C    + +R + +    +       +          +    + P +P      E + +     +D    G  + KR+RTSFKHHQ+R M+TYF+LNHNPD KDLK L+ KT L+KRVLQVWFQNARAK+RR
Sbjct:   82 CCLCTFAIVDKEISVVDGKYYHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAKRYQ-KCCRKCEIPLNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLCEEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPREASTEAEASTD---EDGNGSGSQRSKRMRTSFKHHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVLQVWFQNARAKYRR 321

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Celegans
Match: ttx-3 (LIM/homeobox protein ttx-3 [Source:UniProtKB/Swiss-Prot;Acc:G5EE86])

HSP 1 Score: 170.244 bits (430), Expect = 6.897e-49
Identity = 91/244 (37.30%), Postives = 137/244 (56.15%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNG-NILFCQ---DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C  C   I DK     D   +H +CL+C +C+   + ++ CY R+G F C+ D+ + YQ + C KC+  +  ++MVMK    +FH  CF+C +CG +LN G+Y+ ++    L+C    + +R + +    +       +          +    + P +P      E + +     +D    G  + KR+RTSFKHHQ+R M+TYF+LNHNPD KDLK L+ KT L+KRVLQVWFQNARAK+RR
Sbjct:  110 CCLCTFAIVDKEISVVDGKYYHNNCLRCQMCDIPFEYSDKCYVRDGVFLCRADHAKRYQ-KCCRKCEIPLNREDMVMKAKEMIFHHACFVCFICGIKLNPGDYYTMSPQGHLYCHAHYNAVRSTVLCEEAAVATVPAVVAPPPPPPTTTTAPPPAAPEQPPREASTEAEASTD---EDGNGSGSQRSKRMRTSFKHHQLRAMKTYFALNHNPDAKDLKQLAAKTNLTKRVLQVWFQNARAKYRR 349

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 130.568 bits (327), Expect = 1.774e-34
Identity = 79/249 (31.73%), Postives = 122/249 (49.00%), Query Frame = 1

Query:   88 KNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQ-QRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            K +A  ++C+ C+  I DK++L  D   +H +CL+C  CE  L  +N C+ ++ TFYC+  YFR  +   KCA C   I+  + V +  N V+H+ CF C  C ++L++GE + L    L C+                    L L    S   S  +K+K                                R+RT+F   Q+ V++TYF+ + NPD  DL+ ++  TGLSKRV QVWFQN+RA+ ++
Sbjct:   90 KPDAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPL--SNKCFYKDKTFYCKGCYFRCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF-----------------LELVEGDSGVSSQKAKTK--------------------------------RVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQVWFQNSRARQKK 287

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 130.183 bits (326), Expect = 2.205e-34
Identity = 79/248 (31.85%), Postives = 121/248 (48.79%), Query Frame = 1

Query:   88 KNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            K +A  ++C+ C+  I DK++L  D   +H +CL+C  CE  L  +N C+ ++ TFYC+  YFR     KCA C   I+  + V +  N V+H+ CF C  C ++L++GE + L    L C+                    L L    S   S  +K+K                                R+RT+F   Q+ V++TYF+ + NPD  DL+ ++  TGLSKRV QVWFQN+RA+ ++
Sbjct:   90 KPDAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPL--SNKCFYKDKTFYCKGCYFRELGP-KCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF-----------------LELVEGDSGVSSQKAKTK--------------------------------RVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQVWFQNSRARQKK 285

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 127.872 bits (320), Expect = 1.870e-33
Identity = 79/258 (30.62%), Postives = 122/258 (47.29%), Query Frame = 1

Query:   88 KNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQR----------KCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            K +A  ++C+ C+  I DK++L  D   +H +CL+C  CE  L  +N C+ ++ TFYC+  YFR +             KCA C   I+  + V +  N V+H+ CF C  C ++L++GE + L    L C+                    L L    S   S  +K+K                                R+RT+F   Q+ V++TYF+ + NPD  DL+ ++  TGLSKRV QVWFQN+RA+ ++
Sbjct:   90 KPDAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPL--SNKCFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGNLLCKQHF-----------------LELVEGDSGVSSQKAKTK--------------------------------RVRTTFAEDQLSVLQTYFNRDSNPDGADLEKIASMTGLSKRVTQVWFQNSRARQKK 296

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Match: ap (gene:FBgn0267978 transcript:FBtr0086058)

HSP 1 Score: 199.134 bits (505), Expect = 4.730e-59
Identity = 104/280 (37.14%), Postives = 153/280 (54.64%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNN--------------------------QSLFESIFSKSKP--RRPIGVLDDEVQLNISPRHQDFV----MMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            CSGC   I D++YL   E  WH SCL+C  C Q L++ +SCY R+G  YC++DY+  +  R+C++C   I   E+VM+  N VFH++CF C VC   L  G+ + +   +++C        + +   SS+S  +       + G  +N                            L +    K +P  R+P  +      ++++  + DF     +   S+ KR+RTSFKHHQ+R M++YF++NHNPD KDLK LS+KTGL KRVLQVWFQNARAK+RR
Sbjct:  148 CSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSSMSATY---PYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRR 424

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Match: ap (gene:FBgn0267978 transcript:FBtr0300504)

HSP 1 Score: 198.749 bits (504), Expect = 5.086e-59
Identity = 104/280 (37.14%), Postives = 153/280 (54.64%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNN--------------------------QSLFESIFSKSKP--RRPIGVLDDEVQLNISPRHQDFV----MMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            CSGC   I D++YL   E  WH SCL+C  C Q L++ +SCY R+G  YC++DY+  +  R+C++C   I   E+VM+  N VFH++CF C VC   L  G+ + +   +++C        + +   SS+S  +       + G  +N                            L +    K +P  R+P  +      ++++  + DF     +   S+ KR+RTSFKHHQ+R M++YF++NHNPD KDLK LS+KTGL KRVLQVWFQNARAK+RR
Sbjct:  147 CSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHYSIAREGDTASSSMSATY---PYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRR 423

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0073155)

HSP 1 Score: 126.716 bits (317), Expect = 2.838e-34
Identity = 74/237 (31.22%), Postives = 117/237 (49.37%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAK 822
            C+ C   I+D+++L      WH  CL+C +C   LD+  SC+ R    YC+ DY + +   KC+KC   I   + V +    VFH+ CF C  CG++L++GE F L  + + C+       + T+  G  S       +++      + KSK                               KR+RT+F   Q++V++  F ++ NPD +DL+ ++  TGLSKRV QVWFQN+RA+
Sbjct:    8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY----LETVEGGTTS-------SDEGCDGDGYHKSKT------------------------------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRAR 202

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0330071)

HSP 1 Score: 126.716 bits (317), Expect = 9.721e-34
Identity = 74/240 (30.83%), Postives = 119/240 (49.58%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C+ C   I+D+++L      WH  CL+C +C   LD+  SC+ R    YC+ DY + +   KC+KC   I   + V +    VFH+ CF C  CG++L++GE F L  + + C+       + T+  G  S       +++      + KSK                               KR+RT+F   Q++V++  F ++ NPD +DL+ ++  TGLSKRV QVWFQN+RA+ ++
Sbjct:    8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY----LETVEGGTTS-------SDEGCDGDGYHKSKT------------------------------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK 205

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Match: Awh (gene:FBgn0013751 transcript:FBtr0330070)

HSP 1 Score: 127.102 bits (318), Expect = 1.019e-33
Identity = 75/240 (31.25%), Postives = 116/240 (48.33%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C+ C   I+D+++L      WH  CL+C +C   LD+  SC+ R    YC+ DY + +   KC+KC   I   + V +    VFH+ CF C  CG++L++GE F L  + + C+       + T+  G  S                                     S    D      SK KR+RT+F   Q++V++  F ++ NPD +DL+ ++  TGLSKRV QVWFQN+RA+ ++
Sbjct:    8 CAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADYSKNFGA-KCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHY----LETVEGGTTS-------------------------------------SDEGCDGDGYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKK 205

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Match: lhx2b (LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-051220-1])

HSP 1 Score: 206.068 bits (523), Expect = 3.859e-62
Identity = 104/270 (38.52%), Postives = 159/270 (58.89%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFS--------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS---------PRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +    T F+        G+ S   LGL     +      + + R+  G   D    N +         P  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:   83 LCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFETLIQGDFPTHFNHTDVAPNKGLSSTGPLGLSYYNGVNTVQKGRPRKRKSPGPGADLAAYNAALSCNENDGDPMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 352

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Match: lhx2a (LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-109])

HSP 1 Score: 197.208 bits (500), Expect = 7.982e-60
Identity = 97/263 (36.88%), Postives = 159/263 (60.46%), Query Frame = 1

Query:   82 DNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR--------PIGVLDD--EVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            +N++ +   +C+GC  +I+D++YL   E  WH  CLKC  C+  L+   +C+ ++G  YC+ DY+R +  ++CA+C   I   E+VM+  + V+H+ CF C  C K L +G+++ +    ++C+  I++   + ++    S      +++    ES   +++ RR         I    D  ++ +++S R      +   K KR+RTSFKHHQ+R M+++F+ NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:    3 NNESGSDAPVCAGCGALISDRFYLLAAERRWHERCLKCSACQTDLESELTCFSKHGDIYCKEDYYRRFSSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCRAHIQRECHADLYYSDMSSRETNSESHTYDEESPVHRARVRRRKNNSTADHIAYSSDVSDLGVDLSER------VSCQKSKRMRTSFKHHQLRSMQSFFTHNHNPDAKDLKELAQKTGLTKRVLQVWFQNARAKFRRNCL 259

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Match: lhx9 (LIM homeobox 9 [Source:NCBI gene;Acc:550405])

HSP 1 Score: 199.134 bits (505), Expect = 8.479e-60
Identity = 107/291 (36.77%), Postives = 163/291 (56.01%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR---PIGVLD--------DEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  N+++C+             ++  + ++    G+   +  G    Q        K +PR+   P   +D        +E   +   R Q        K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   60 MPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHPQLNYAELAAKGGGLALPYFNGTGTVQ--------KGRPRKRKSPAMGIDIGSYSSGCNENDADHLDRDQQPYPPS-QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Match: lhx2a (LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-109])

HSP 1 Score: 192.586 bits (488), Expect = 5.410e-58
Identity = 97/264 (36.74%), Postives = 159/264 (60.23%), Query Frame = 1

Query:   82 DNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYF-RIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR--------PIGVLDD--EVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            +N++ +   +C+GC  +I+D++YL   E  WH  CLKC  C+  L+   +C+ ++G  YC+ DY+ R +  ++CA+C   I   E+VM+  + V+H+ CF C  C K L +G+++ +    ++C+  I++   + ++    S      +++    ES   +++ RR         I    D  ++ +++S R      +   K KR+RTSFKHHQ+R M+++F+ NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:    3 NNESGSDAPVCAGCGALISDRFYLLAAERRWHERCLKCSACQTDLESELTCFSKHGDIYCKEDYYSRRFSSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDHYGMKETSVYCRAHIQRECHADLYYSDMSSRETNSESHTYDEESPVHRARVRRRKNNSTADHIAYSSDVSDLGVDLSER------VSCQKSKRMRTSFKHHQLRSMQSFFTHNHNPDAKDLKELAQKTGLTKRVLQVWFQNARAKFRRNCL 260

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Match: lhx9 (LIM homeobox 9 [Source:NCBI gene;Acc:550405])

HSP 1 Score: 169.088 bits (427), Expect = 6.260e-49
Identity = 91/262 (34.73%), Postives = 145/262 (55.34%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR---PIGVLD--------DEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQ 795
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  N+++C+             ++  + ++    G+   +  G    Q        K +PR+   P   +D        +E   +   R Q        K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQ
Sbjct:   60 MPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHPQLNYAELAAKGGGLALPYFNGTGTVQ--------KGRPRKRKSPAMGIDIGSYSSGCNENDADHLDRDQQPYPPS-QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Match: zfp36l2 (ZFP36 ring finger protein-like 2 [Source:Xenbase;Acc:XB-GENE-971012])

HSP 1 Score: 199.134 bits (505), Expect = 1.127e-59
Identity = 105/274 (38.32%), Postives = 160/274 (58.39%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR----PIGV----LDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+   SV+H+ CF C  C K L++G++F +  N+++C+             ++  + +S    GI +   L   +N +       K +PR+     +GV           N +   +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:   50 MPSLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQQLNYTELSAKGGGIAT---LPYFSNGT---GTVQKGRPRKRKSPALGVDIINYSSGCNENETDLDRDQTYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 317

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Match: zfp36l2 (ZFP36 ring finger protein-like 2 [Source:Xenbase;Acc:XB-GENE-971012])

HSP 1 Score: 199.134 bits (505), Expect = 1.218e-59
Identity = 105/274 (38.32%), Postives = 160/274 (58.39%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR----PIGV----LDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+   SV+H+ CF C  C K L++G++F +  N+++C+             ++  + +S    GI +   L   +N +       K +PR+     +GV           N +   +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:   61 MPSLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQQLNYTELSAKGGGIAT---LPYFSNGT---GTVQKGRPRKRKSPALGVDIINYSSGCNENETDLDRDQTYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 328

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Match: LHX2 (LIM homeobox 2 [Source:NCBI gene;Acc:100486746])

HSP 1 Score: 198.364 bits (503), Expect = 2.803e-59
Identity = 108/279 (38.71%), Postives = 160/279 (57.35%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKS-SISTIFSGIQSDF-----RLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-----------PRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  N+++C        Q E +   S S + SG  S        LGL     +      + + R+  G   D    N +            R Q +      K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:   42 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQVHFSHSDVASGKGSGLGTGAASLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDGDHMDRDQQYTPN--QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 318

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Match: LHX2 (LIM homeobox 2 [Source:NCBI gene;Acc:100486746])

HSP 1 Score: 198.749 bits (504), Expect = 3.200e-59
Identity = 108/279 (38.71%), Postives = 160/279 (57.35%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKS-SISTIFSGIQSDF-----RLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-----------PRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGL 840
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  N+++C        Q E +   S S + SG  S        LGL     +      + + R+  G   D    N +            R Q +      K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L
Sbjct:   63 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFETLIQGEYQVHFSHSDVASGKGSGLGTGAASLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDGDHMDRDQQYTPN--QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 339

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Match: zfp36l2 (ZFP36 ring finger protein-like 2 [Source:Xenbase;Acc:XB-GENE-971012])

HSP 1 Score: 171.4 bits (433), Expect = 1.174e-49
Identity = 92/259 (35.52%), Postives = 146/259 (56.37%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR----PIGV----LDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQ 795
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+   SV+H+ CF C  C K L++G++F +  N+++C+             ++  + +S    GI +   L   +N +       K +PR+     +GV           N +   +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQ
Sbjct:   61 MPSLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFELLVQGDFHQQLNYTELSAKGGGIAT---LPYFSNGT---GTVQKGRPRKRKSPALGVDIINYSSGCNENETDLDRDQTYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Match: Lhx9 (LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:1316721])

HSP 1 Score: 199.134 bits (505), Expect = 7.791e-60
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   61 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 332

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Match: Lhx9 (LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:1316721])

HSP 1 Score: 198.749 bits (504), Expect = 1.277e-59
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   70 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Match: Lhx2 (LIM homeobox protein 2 [Source:MGI Symbol;Acc:MGI:96785])

HSP 1 Score: 194.126 bits (492), Expect = 4.413e-58
Identity = 103/291 (35.40%), Postives = 161/291 (55.33%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFS-------------------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-------PRH--QDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +      F+                   G      LGL     +      + + R+  G   D    N +         H  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:    1 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGSAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 291

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Match: Lhx2 (LIM homeobox protein 2 [Source:MGI Symbol;Acc:MGI:96785])

HSP 1 Score: 194.126 bits (492), Expect = 1.105e-57
Identity = 103/291 (35.40%), Postives = 161/291 (55.33%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFS-------------------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS-------PRH--QDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            M + ++ +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +      F+                   G      LGL     +      + + R+  G   D    N +         H  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:   42 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGSAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 332

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Match: Lhx9 (LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:1316721])

HSP 1 Score: 169.474 bits (428), Expect = 3.299e-49
Identity = 88/245 (35.92%), Postives = 135/245 (55.10%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQ 795
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQ
Sbjct:   61 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303

[Close]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Match: sp|Q80W90|LHX9_RAT (LIM/homeobox protein Lhx9 OS=Rattus norvegicus OX=10116 GN=Lhx9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.113e-59
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   61 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 332

[Close]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Match: sp|Q90881|LHX9_CHICK (LIM/homeobox protein Lhx9 OS=Gallus gallus OX=9031 GN=LHX9 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 5.657e-59
Identity = 106/284 (37.32%), Postives = 154/284 (54.23%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            M   +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+   SV+H+ CF C  C K L +G++F +  N+++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   M   +Q        KR+ TSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   60 MPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFESLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHMDRDQQPYPPSQKTKRMATSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Match: sp|Q9NQ69|LHX9_HUMAN (LIM/homeobox protein Lhx9 OS=Homo sapiens OX=9606 GN=LHX9 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 6.358e-59
Identity = 104/274 (37.96%), Postives = 153/274 (55.84%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   70 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Match: sp|Q1LWV4|LHX9_DANRE (LIM/homeobox protein Lhx9 OS=Danio rerio OX=7955 GN=lhx9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 6.401e-59
Identity = 107/291 (36.77%), Postives = 163/291 (56.01%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR---PIGVLD--------DEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  N+++C+             ++  + ++    G+   +  G    Q        K +PR+   P   +D        +E   +   R Q        K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   60 MPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFETLIQGEYHPQLNYAELAAKGGGLALPYFNGTGTVQ--------KGRPRKRKSPAMGIDIGSYSSGCNENDADHLDRDQQPYPPS-QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Match: sp|A0JNI8|LHX9_BOVIN (LIM/homeobox protein Lhx9 OS=Bos taurus OX=9913 GN=LHX9 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 8.034e-59
Identity = 104/274 (37.96%), Postives = 152/274 (55.47%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQ--------KRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C        Q E       T  +       L   N     +    + +    +GV  D V  N      +   +   +Q        KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   70 LCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGV--DIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS 341

[Close]

BLAST of LIM/homeobox protein vs. TrEMBL
Match: R7U050 (Uncharacterized protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_43751 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.049e-63
Identity = 111/272 (40.81%), Postives = 161/272 (59.19%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFS----KSKPRRPIGVLDDEVQLNISPRH----QDFVMMG-----ISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTNS 861
            LC+GC   ITD+YYL+  E  WH +CL+C  C+  LD   +CY R+G+ +C+ DY+R++  ++C+ C   I   E+VMK  +SV+H++CF C  C K L +GE+F +  N+++C        Q E   S        +      G      +F  + +    K +PR+     +DE+++     H     D   +G      ++QKR+RTSFKHHQ+R+M++YF LNHNPD KDLK L++KTGLSKRVLQVWFQNARAK RR+ L K D + 
Sbjct:    1 LCAGCGEKITDRYYLQAVERAWHANCLRCAQCKLPLDSEVTCYARDGSIFCKEDYYRLFAIKRCSGCHLAISANELVMKARDSVYHMNCFTCASCHKLLITGEHFGMKENLIYCRMHYEMVVQGEFYPSPGHGGLDSVSFPALHGPGAMPHVFNGVHAPSAPKGRPRKRKRQAEDELEMCGRSLHGFNENDLPGLGNDMSMQARQKRMRTSFKHHQLRIMKSYFQLNHNPDAKDLKQLAQKTGLSKRVLQVWFQNARAKHRRN-LLKQDADG 271

[Close]

BLAST of LIM/homeobox protein vs. TrEMBL
Match: A7RYP5 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g98128 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 6.905e-62
Identity = 104/259 (40.15%), Postives = 158/259 (61.00%), Query Frame = 1

Query:   91 NNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPR-RPIGVLDDEVQ---LNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDT 855
             + Q+ +C+GC   I +++YL   +  WH  CLKC  CE  LD   +C+ ++G   C+ DY+R +  +KC+ C + I  KE+VM+  + V+H++CF C  C + L +GEYF + G  ++C+++  +         ++ + R     N +   S+ SK +PR R I    + +     ++S R  +       + KR+RTSFKHHQ+R M+TYF++NHNPD KDLK LS+KTGL+KRVLQVWFQNARAKFRR+  + S T
Sbjct:    2 GDKQQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYEEL--------LREESR-----NPTKINSL-SKGRPRKRRIATAIESITNLGYDLSDRPGELTTGADGRPKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQVWFQNARAKFRRTVCNTSQT 246

[Close]

BLAST of LIM/homeobox protein vs. TrEMBL
Match: A0A1S4GZT4 (LIM homeobox protein 2/9 OS=Anopheles gambiae OX=7165 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 9.941e-61
Identity = 109/279 (39.07%), Postives = 155/279 (55.56%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGI---------QSDFRLGLQNNQSLFESIFSKSK-------PRRPIGVLDDEVQLNISPR----------------HQDFVMMGI-------SKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C+GC+  I D++YL   E  WH SCL+C IC Q+L+  NSC+ R+G  YC+ DY+R++  R+C+KC   I   E+VM+  + VFHI CF C VC   LN G+++ +  + +FC+  I     +    G+         QS +        S  +S  S  K       P   +  L  + +    PR                + +++ +G        S+ KR+RTSFKHHQ+R M++YF++NHNPD KDLK LS+KTGL KRVLQVWFQNARAK+RR
Sbjct:  139 CAGCDMPIQDRFYLSAVERKWHASCLQCCICRQTLEGANSCFSRDGNIYCKTDYYRVFGSRRCSKCLASISSSELVMRARHLVFHIRCFSCAVCNTPLNKGDHYTIRDSAVFCRSHIELPLEAATTPGLPGMPMQCPYQSQYGTSPVAPLSPSDSTTSGGKLNPATYYPPHGVTGLPQQPRQKGRPRKRKPKDIEAMTASLDLNTEYLDLGFSRGLGSSSRAKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRR 417

[Close]

BLAST of LIM/homeobox protein vs. TrEMBL
Match: A0A499FSX8 (Uncharacterized protein OS=Anopheles arabiensis OX=7173 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.102e-60
Identity = 109/279 (39.07%), Postives = 155/279 (55.56%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGI---------QSDFRLGLQNNQSLFESIFSKSK-------PRRPIGVLDDEVQLNISPR----------------HQDFVMMGI-------SKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C+GC+  I D++YL   E  WH SCL+C IC Q+L+  NSC+ R+G  YC+ DY+R++  R+C+KC   I   E+VM+  + VFHI CF C VC   LN G+++ +  + +FC+  I     +    G+         QS +        S  +S  S  K       P   +  L  + +    PR                + +++ +G        S+ KR+RTSFKHHQ+R M++YF++NHNPD KDLK LS+KTGL KRVLQVWFQNARAK+RR
Sbjct:  142 CAGCDMPIQDRFYLSAVERKWHASCLQCCICRQTLEGANSCFSRDGNIYCKTDYYRVFGSRRCSKCLASISSSELVMRARHLVFHIRCFSCAVCNTPLNKGDHYTIRDSAVFCRSHIELPLEAATTPGLPGMPMQCPYQSQYGTSPVAPLSPSDSTTSGGKLNPATYYPPHGVTGLPQQPRQKGRPRKRKPKDIEAMTASLDLNTEYLDLGFSRGLGSSSRAKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLSQKTGLPKRVLQVWFQNARAKWRR 420

[Close]

BLAST of LIM/homeobox protein vs. TrEMBL
Match: Q49QW5 (Apterous OS=Euprymna scolopes OX=6613 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.092e-59
Identity = 104/263 (39.54%), Postives = 158/263 (60.08%), Query Frame = 1

Query:   88 KNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESI--FSKSKP--RRPIGVLDDEVQLNIS------PRHQDFV----MMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRS 834
            +++ +  +C+GC  +IT++YYL    + WH +CLKC  C+ +LD   SCY+R G +YC+ DY R++  ++CA+C   I+  ++VM+  N V+H+ CF C  C K L +G+ F L  ++++CQ    ++S    +  +  D   G       +  +    K +P  RR   +  DE   NI        R  D +         +QKR+RTSFKHHQ+R +++YF++NHNP  KDLK L++KTGL+KRVLQVWFQNARAKFRR+
Sbjct:   84 QDDHKPFICAGCGDLITERYYLNVANNAWHFNCLKCYECKSTLDTERSCYERMGNYYCRDDYQRLFSTQRCARCNMGIQSTDLVMRARNHVYHLTCFTCFTCNKALQAGDTFGLREHLVYCQVHY-ENSYHAEYIALSPDMNAG---QMPYYNGVGTLQKGRPRKRRSPNISSDEFAHNIGLGADSLDRAGDMIDRDTYQNAPRQKRMRTSFKHHQLRTLKSYFAVNHNPGAKDLKHLAQKTGLTKRVLQVWFQNARAKFRRN 342

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Match: lhx2b (LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-051220-1])

HSP 1 Score: 202.986 bits (515), Expect = 3.146e-61
Identity = 102/270 (37.78%), Postives = 155/270 (57.41%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFS--------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS---------PRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  C K L +G++F +  ++++C+   + + +      F         G      LGL     +      + + R+  G   D    N +         P  +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L + +T 
Sbjct:   52 LCAGCGGRISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFETLVQGDYGAPFGHADVAHGKGAVPAGPLGLAYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDGDPMDRDSQYSSGQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTG 321

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Match: lhx9 (LIM homeobox 9 [Source:NCBI gene;Acc:103038813])

HSP 1 Score: 197.208 bits (500), Expect = 1.346e-59
Identity = 108/287 (37.63%), Postives = 158/287 (55.05%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR---PIGVLD--------DEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  N+++C        Q E          +       L   N     +    K +PR+   P   +D        +E   +   R Q        K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   19 MPSVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFESLVQGEYHAPLNYAELAAKGGGLALPYFNGAGAVQ----KGRPRKRKSPAMGIDINTYNSGCNENDADHLDRDQQPYPPS-QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENGGVDKADGTS 300

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Match: lhx9 (LIM homeobox 9 [Source:NCBI gene;Acc:103038813])

HSP 1 Score: 167.933 bits (424), Expect = 1.124e-48
Identity = 86/253 (33.99%), Postives = 136/253 (53.75%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFC--------QDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFV------MMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQ 795
            M + +  +  LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  N+++C        Q E          +       L   N     +    + +    +G+  +      +    D +           K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQ
Sbjct:   60 MPSVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFESLVQGEYHAPLNYAELAAKGGGLALPYFNGAGAVQKGRPRKRKSPAMGIDINTYNSGCNENDADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Match: ENSAMXT00000051669.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002054.1:401899:417880:1 gene:ENSAMXG00000041554.1 transcript:ENSAMXT00000051669.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 162.925 bits (411), Expect = 2.213e-46
Identity = 87/246 (35.37%), Postives = 122/246 (49.59%), Query Frame = 1

Query:   97 AQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRS 834
            A   +C GC   ++D++ L      WHG+CL+C  C   L   +S Y R+G  YCQ DY  ++   +CA+C + I    +VM+  +  FH+HCF C  C   L  G  + + G  L+CQ   +    +               ++Q   E   S  +PR     L++  +   + R          + KR+RT F+  Q+R +  YFS  HNPD KD   LS  TGL KRVLQVWFQNARAK RRS
Sbjct:   48 AAPPVCGGCGERVSDRFVLLAAGQAWHGACLRCSSCHCELQSHSSLYCRDGNIYCQQDYCSLFGVGRCARCSQPIPSSALVMRSGDMTFHLHCFSCQECDVTLLPGNLYCVEGRSLYCQSHYQPDGTTLSLH----------SSSQGEAEEPVSSPEPR-----LEERARGGGACR----------RVKRMRTCFRREQLRALEAYFSQKHNPDGKDWVNLSNHTGLPKRVLQVWFQNARAKLRRS 268

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Match: lmx1ba (LIM homeobox transcription factor 1, beta a [Source:NCBI gene;Acc:554361])

HSP 1 Score: 142.895 bits (359), Expect = 3.606e-39
Identity = 83/241 (34.44%), Postives = 129/241 (53.53%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            +C+GC+  I D++ LR +E  WH  CL+C +C+Q L  T SCY R+   YC+HDY R++   KC+ C E I   E VM+ L SV+H+ CF C VC ++L  G+ F+L  + L C+ +  +     + + I  +    + +++S  E +    KP +  G  +     +   R          + KR RT     Q R  +  F ++  P  K  +TL+ +TGLS RV+QVWFQN RAK ++
Sbjct:   30 VCAGCQRPIADRFLLRVNESSWHEECLQCAVCQQPL--TMSCYCRDRKVYCKHDYQRLFAT-KCSGCLEKIAPTEFVMRALKSVYHLGCFCCCVCERQLCKGDEFVLKDSQLLCKKDYERE--KDLLNAISPE----MSDSKSEDEDV--DVKPEKGSGGQNKGSDDSKDSR----------RPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKK 249

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Match: lmo4b (LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570])

HSP 1 Score: 88.9669 bits (219), Expect = 1.930e-21
Identity = 49/138 (35.51%), Postives = 65/138 (47.10%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSL-DKTNSCYKRNGTFYCQHDYFRIY-QQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ-DEIRKSSISTIFSGIQSDFRL 516
            C+GC   I D++ L + +  WH  CLKC  C+  L D   SCY R G   C+ DY R++     C  C + I   E+VMK   +V+H+ CF C  C  RL  G+ F      LFC+ D        T   G   D  L
Sbjct:   18 CAGCGGKIADRFLLYSMDCYWHSRCLKCSCCQAQLGDLGTSCYTRQGMILCRDDYIRMFGSSGACNACGQSIPASELVMKTQGNVYHLKCFACATCRTRLVPGDRFHYVNGSLFCEHDRPAGPGPLTAHRGTLGDGSL 155

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 87.4261 bits (215), Expect = 6.348e-21
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = 1

Query:  106 LLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNS-CYKRNGTFYCQHDYFRIY-QQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSS 474
            L+C GC   I+D+Y L+  E  WH  CL CD+C   L +     Y + G   C+ DY R++ Q   CA C + I   EM M+V + V+H+ CF C  C K    G+ +LL  + + C+ +I + S
Sbjct:   28 LMCGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSDIICEQDIYEWS 152

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 86.2705 bits (212), Expect = 1.555e-20
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 1

Query:  106 LLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNS-CYKRNGTFYCQHDYFRIY-QQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGE-YFLLNGNILFCQDEIRKSSISTIFS 492
            L+C GC   I+D+Y L+  E  WH  CL CD+C   L +     Y + G   C+ DY R++ Q   CA C + I   EM M+V + V+H+ CF C  C K    G+ Y L+N +I+  QD    S I+ + +
Sbjct:   27 LMCGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSDIICEQDIYEWSKINIMMT 158

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002189.1 (pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gene:ENSPMAG00000001979.1 transcript:ENSPMAT00000002189.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 73.9442 bits (180), Expect = 3.411e-15
Identity = 50/180 (27.78%), Postives = 79/180 (43.89%), Query Frame = 1

Query:  295 KCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLL-NGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            KCAKC       + VM+  + ++H+ CF C  C ++L  G+ F L +G  L C+ +          +G                      +   RP   +     L++S      +  G  K  R+RT     Q++ +RT ++ N  PD    + L E TGLS RV++VWFQN R K ++
Sbjct:    6 KCAKCNASFSKTDFVMRARSHIYHMECFRCETCSRQLLPGDEFALRDGGGLLCRADQHHGGGGGGGAGGAG-------GGAGGGGGGLLGTALTRPGSPVHSSRSLHLS----GGIPSGPEKATRVRTVLNEKQLQTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 174

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006267.1 (pep scaffold:Pmarinus_7.0:GL478686:5064:37345:-1 gene:ENSPMAG00000005668.1 transcript:ENSPMAT00000006267.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.3806 bits (137), Expect = 7.200e-10
Identity = 39/138 (28.26%), Postives = 61/138 (44.20%), Query Frame = 1

Query:  151 LRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQD-------EIRKSSISTIFSGIQSDFRLGLQNNQSLF 543
            LR +   +H SC  C +C   L +    + +NG + C  DY R+Y  R C  C + +E +  V+  L   +H  CF+C VC +   SG     NG    C +        +R  S  +  +G   D    ++N Q+L 
Sbjct:   37 LRVENRHFHVSCFTCKVCGCDLAQCGF-FVKNGEYVCTLDYQRLYGTR-CQACGDFVEGE--VVTALGRTYHPRCFVCSVCRQPFPSGARVTFNGRECLCHECTQPISPVLRDPSNPSNCAGCGRD----IKNGQALL 166

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Match: EDO43354 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RYP5])

HSP 1 Score: 208.764 bits (530), Expect = 9.549e-66
Identity = 104/259 (40.15%), Postives = 158/259 (61.00%), Query Frame = 1

Query:   91 NNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPR-RPIGVLDDEVQ---LNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDT 855
             + Q+ +C+GC   I +++YL   +  WH  CLKC  CE  LD   +C+ ++G   C+ DY+R +  +KC+ C + I  KE+VM+  + V+H++CF C  C + L +GEYF + G  ++C+++  +         ++ + R     N +   S+ SK +PR R I    + +     ++S R  +       + KR+RTSFKHHQ+R M+TYF++NHNPD KDLK LS+KTGL+KRVLQVWFQNARAKFRR+  + S T
Sbjct:    2 GDKQQAVCAGCGSRILERFYLMAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRRFSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYEEL--------LREESR-----NPTKINSL-SKGRPRKRRIATAIESITNLGYDLSDRPGELTTGADGRPKRVRTSFKHHQLRAMKTYFAMNHNPDAKDLKQLSQKTGLTKRVLQVWFQNARAKFRRTVCNTSQT 246

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Match: EDO34370 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SPK5])

HSP 1 Score: 148.288 bits (373), Expect = 8.504e-42
Identity = 78/242 (32.23%), Postives = 125/242 (51.65%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSG 837
            C GCE  I D+Y ++     WH  CLKC +C   L +  +CY ++G  YC+ DY R +   KCA+C   I   + V +  N V+H+ CF C  C ++L++GE F L    + C+                              E++ +    R    V   +V  + SP   + +  G  K KR+RT+F   Q+++++  F+++ NPD +DL+ +++ TGLSKRV QVWFQN+RA+ ++ G
Sbjct:   28 CVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYARQFGT-KCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCK--------------------------LHYLEALDTSPAERDYQEVFSPDVDGDDSP---NSLKSGRHKAKRVRTTFTEDQLQILQANFNIDSNPDGQDLERIAQLTGLSKRVTQVWFQNSRARQKKYG 239

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Match: EDO46073 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR95])

HSP 1 Score: 138.272 bits (347), Expect = 6.693e-38
Identity = 85/250 (34.00%), Postives = 121/250 (48.40%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHV-WHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQD--EIRKSSISTIFS------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            +C GC   I D+Y LR    + WH SCLKC  C   LD+  +C+ R G  YC+ DY R++   KCAKC  +    + VM+  N ++HI CF C  C ++L  G+ F L  + LFC+   EI + + +T  +      G +S    G  N Q+  +S  SK K  RP                            R+RT     Q+  +RT ++ N  PD    + L E TGLS RV++VWFQN R K ++
Sbjct:   16 MCVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDEKCTCFVREGKTYCKRDYVRLFGT-KCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKADHEIVEKATATAQATHVRNNGQRSSQSGGQTNGQTTPDSTPSKRKTDRPT---------------------------RVRTVLNEKQLHTLRTCYNANPRPDAMMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 237

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Match: LHX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E9])

HSP 1 Score: 122.479 bits (306), Expect = 3.635e-33
Identity = 69/242 (28.51%), Postives = 125/242 (51.65%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGE--YFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C+GC+  I DK+ L+  + VWH  C++C  C+  L  T  C+ R G  +C+ D++R Y   KC+ C + I   +MV +  + VFH+ CF+C  C +++ +G+  Y++ +G+ + C+D+   S  + +   I                      +P+     LD+++   ++           SK++  RT+ K  Q+  +++ F+    P     + L+++TGL+ RV+QVWFQN R+K RR
Sbjct:    5 CAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPL--TERCFSREGKLFCKTDFYRRYGT-KCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFI-CRDDYYHSHPTNLDDAI---------------------DEPKDLSYGLDEDLDAALA-----------SKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQNRRSKERR 210

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Match: EDO37316 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG43])

HSP 1 Score: 94.3597 bits (233), Expect = 2.602e-23
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1

Query:   97 AQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTN-SCYKRNGTFYCQHDYFRIY-QQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDE 459
            A   +C+GC   I D++ L   +  WH +CLKC  CE  L +   SCY + G   C+ DY R+Y     CA C + I   E+VMKVL  V+H+HCF C  C  +L  G+ F +    LFC+++
Sbjct:   14 ASMRVCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCEND 136

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Match: lhx2b (LIM homeobox 2 [Source:NCBI gene;Acc:101154958])

HSP 1 Score: 200.29 bits (508), Expect = 5.372e-60
Identity = 103/270 (38.15%), Postives = 156/270 (57.78%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFS--------GIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNIS---------PRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTN 858
            LC+GC   I D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  + V+H++CF C  CGK L +G++F +  ++++C+   + + +    T F+        G+     LGL     L      + + R+  G   +    N +            +D       K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR+ L +  T 
Sbjct:   73 LCAGCGRKIADRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCGKMLTTGDHFGMKDSLVYCRLHFETLIQGEYQTNFNHADIVPHKGLGPANTLGLSYFNGLGTVQKGRPRKRKSPGPGAELAAYNAALSCNENDGESMDRDSQYSSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQETTG 342

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Match: lhx9 (LIM homeobox 9 [Source:NCBI gene;Acc:100049461])

HSP 1 Score: 197.593 bits (501), Expect = 2.847e-59
Identity = 105/282 (37.23%), Postives = 159/282 (56.38%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ-------------DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRR---PIGVLD--------DEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-------SGLSKSDTNS 861
            LC+GC   I+D+YYL   +  WH  CLKC  C+ +L+   +C+ ++G+ YC+ DY+R +  ++CA+C   I   EMVM+  +SV+H+ CF C  C K L +G++F +  ++++C+              ++  + ++    G+   +  G    Q        K +PR+   P   +D        +E   +   R Q        K KR+RTSFKHHQ+R M++YF++NHNPD KDLK L++KTGL+KRVLQVWFQNARAKFRR        G+ K+D  S
Sbjct:   72 LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFETLVQGPDYHPQLNFAELAAKGGGLALPYFNGTGTTQ--------KGRPRKRKSPAMGIDIPSYNTGCNENDTDHLDRDQQ-AYPPTQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNVLRQENGGVDKADGTS 344

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Match: ENSORLT00000039212.1 (LIM/homeobox protein Lhx2-like [Source:NCBI gene;Acc:101155206])

HSP 1 Score: 160.614 bits (405), Expect = 1.142e-45
Identity = 95/249 (38.15%), Postives = 132/249 (53.01%), Query Frame = 1

Query:  106 LLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGL-----QNNQS-LFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRS 834
            ++C+GC  ++ D+++L     VWHG+CL+C +C   L    S Y R+G  YCQ DY RI+   +CA+C + I    +VM+  +  FH  CF C  C  +L  G  + + G  L+C+   ++   S   S      RL L     QN+ S   E   S  +PR     LDD+     S            + KR+RT F+  Q+R + +YF+  HNPD KD   L+ KTGL KRVLQVWFQNARAK RRS
Sbjct:    1 MVCAGCGELVCDRFFLLAAGRVWHGACLRCSLCHCELQTHASLYWRDGNIYCQQDYCRIFGGGRCARCFQPIPPSALVMRSGDLTFHPQCFSCQECDVKLLPGNLYCMQGANLYCESHYQEDGGSV--SHHDPSMRLSLSEEPGQNHVSGEGEDSVSSPEPR-----LDDKAGGGRS----------RRRSKRIRTCFRREQLRALESYFAQKHNPDGKDWTCLAHKTGLPKRVLQVWFQNARAKLRRS 232

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Match: isl1 (ISL LIM homeobox 1 [Source:NCBI gene;Acc:101165983])

HSP 1 Score: 142.895 bits (359), Expect = 6.601e-39
Identity = 86/257 (33.46%), Postives = 126/257 (49.03%), Query Frame = 1

Query:   79 MDNKNNAQRL--LCSGCECVITDKYYLRTDEHV-WHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQ---DEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            M +    +RL  LC GC   I D+Y LR    + WH +CLKC  C Q LD++ +C+ R+G  YC+ DY R+Y   KCAKC       + VM+  + V+HI CF C  C ++L  G+ F L  + LFC+   D + ++S+ T                        S   P RP+ +  + +     P  +  V     K  R+RT     Q+  +RT ++ N  PD    + L E TGLS RV++VWFQN R K ++
Sbjct:    4 MGDPPKKKRLVSLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGT--------------------GDPLSPLHPARPLQMAAEPISAR-QPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 238

[Close]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Match: ENSORLT00000016493.2 (LIM/homeobox protein Lhx8 [Source:NCBI gene;Acc:101170874])

HSP 1 Score: 141.739 bits (356), Expect = 1.180e-38
Identity = 82/243 (33.74%), Postives = 125/243 (51.44%), Query Frame = 1

Query:  103 RLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            + LC+ C   I D+Y L+ ++  WH  CL C +C  SL +  SCY ++   +C+ DYFR Y  R CA+C  +I   + V +   S FH+ CF C  C ++L++GE   L  N +FC+           +     + +   +N Q   E   S +K    +G                         KR RTSF   Q++VM+T F+ ++NPD + L+ L+EKTGLS+RV+QVWFQN RA+ ++
Sbjct:   45 KTLCTSCGQEIVDRYLLKVNDLCWHVRCLSCSVCNTSLGRHVSCYVKDSQVFCKLDYFRRYGTR-CARCGRNIHSTDWVRRAKGSTFHLACFSCASCKRQLSTGEECGLFENRVFCRPH---------YDVAMENLKRSKENEQPQPED-RSANKESSTVG----------------------RPAKRARTSFTVDQLQVMQTQFAKDNNPDAQTLQKLAEKTGLSRRVIQVWFQNCRARQKK 254

[Close]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Match: SMESG000001774.1 (SMESG000001774.1)

HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1

Query:   79 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTNSQTNEXXXXXXXXXXXXXXXQEVINKENESDER 957
            MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTNSQTNEDILDSTLSYSDDTSSQEVINKENESDER
Sbjct:    1 MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTNSQTNEDILDSTLSYSDDTSSQEVINKENESDER 293

[Close]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Match: SMESG000010916.1 (SMESG000010916.1)

HSP 1 Score: 228.024 bits (580), Expect = 1.233e-70
Identity = 121/280 (43.21%), Postives = 173/280 (61.79%), Query Frame = 1

Query:   94 NAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQS------LFESI----------------FSKSKPRRPIGVLDDEVQL-NISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLSKSDTNSQ 864
            N   + C+GC+  ITD+++L+  + +WH +CL+C IC   L    SC+ R+G  YC+ DY R++ ++ C +C   I + E+VM+V N VFH+ CF C  CG+ LN GEYF L G + FCQD++ K+ I+     I  + + GL N+Q+      LF  +                F    P+          +L N+    +DF +   S+QKR+RTSFKHHQ+R M++YF+LNHNPD KDLK+LSEKTGLSKRVLQVWFQNARAK+RR+ +S+++  SQ
Sbjct:   25 NQNSMNCAGCKSKITDRFFLKAADKMWHVNCLRCWICHVELHSEMSCFTRDGVVYCKEDYSRLFGRKCCIRCGVKITYDELVMRVKNLVFHVTCFCCVQCGRMLNPGEYFGLKGLLPFCQDDLIKNPINMSEDFIH-NLQNGLTNSQASVPHLFLFHPLSRLNNFYHSPLNDSHNFHSIIPKVRGKKKRKGSELDNLYETSEDFCIGNASRQKRMRTSFKHHQLRAMKSYFALNHNPDAKDLKSLSEKTGLSKRVLQVWFQNARAKYRRN-VSRNENTSQ 302

[Close]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Match: SMESG000005304.1 (SMESG000005304.1)

HSP 1 Score: 115.931 bits (289), Expect = 1.725e-28
Identity = 85/291 (29.21%), Postives = 136/291 (46.74%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYK-RNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGEYFLLNG--NILFCQDEIRKSSI----STIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISK--QKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR-SGLSKSDTNSQTNEXXXXXXXXXXXXXXXQEVINKENESDE 954
            C+GC  VI DKY    ++  WH SC  C ICE+ L++  SC+  ++   +C++ Y++     KC+ C   ++  E+ M  LN V+H+ CF C  C + L  G+ F+L+G  ++L C+ +    +     S   +     F     N  S+ E   S        G        N   +  ++     SK   KR RT+    Q R +  +F    NP+ K  + L+E+  L  +V+QVWFQN RAK R+   LS   +NSQ +     S +           +NKE++ D+
Sbjct:   34 CTGCNGVINDKYLFSLNDTFWHKSCALCSICEEVLEE--SCFMLKDNKLFCRNHYYKSSFATKCSGCNLPMQTHEVAMHALNRVYHVTCFACSCCKQLLQRGDEFILHGPESLLVCRADYESGAYLHCSSNTLNDCDQSFSHKDSNETSMKELQISYQYHEDGTGKHSSTDSSN--GKQYNYFSSYNSKVSSKRPRTTLTFDQKRRLMVFFKTCQNPNYKQREALAEEMKLPLKVVQVWFQNQRAKVRQIKKLSNQISNSQHHSSDDPSNVDNEPLDQCVSSVNKESDIDQ 320

[Close]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Match: SMESG000071273.1 (SMESG000071273.1)

HSP 1 Score: 110.153 bits (274), Expect = 1.398e-26
Identity = 71/241 (29.46%), Postives = 103/241 (42.74%), Query Frame = 1

Query:  112 CSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSG-EYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQNNQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRR 831
            C  C+  I D+  L+     WH  CL C  C   L   + CY ++   +C+ D+FR Y  R CA C E I   E++ K  N+++H+ CF C  C ++LN+G E+FLL+   L C                + DF +     Q L +                                      KR RT+    Q+  ++  +S +  P     + LS KTGL  RV+QVWFQN RAK +R
Sbjct:   46 CIACKGPILDRVVLKVGLSTWHVRCLHCTDCGIPL--IDKCYSKSDEIFCKEDFFRRYGTR-CAACDEVIPASEVIRKAQNNIYHLECFACISCHRQLNTGEEFFLLSSRKLMC----------------RPDFEIAKTKEQELDQG------------------------------------NKRPRTTITAKQLEALKKTYSESSKPARHVREQLSAKTGLDMRVVQVWFQNRRAKEKR 231

[Close]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Match: SMESG000022856.1 (SMESG000022856.1)

HSP 1 Score: 108.227 bits (269), Expect = 2.212e-26
Identity = 82/273 (30.04%), Postives = 127/273 (46.52%), Query Frame = 1

Query:  109 LCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTNSCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCFICGVCGKRLNSGE--YFLLNGNILFCQ-----------------DEIRKSSISTIFSGIQSDFRLGLQNNQS----LFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISK-----QKRLRTSFKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFRRSGLS 843
            +C  C   I DK+  R  +H WH  CL+C+ C   L  T+ C++ +  F C  DY R   ++            +++     S+FH +CF C  C ++L SG+  Y    G+++ CQ                 ++I K+ +  IFS I S      +NN+      F +I S  + R   G L D++   I P   +       K     ++  RT+ K  Q+  ++  FS+   P  +  + L+E TGLS RV+QVWFQN R+K RRS LS
Sbjct:    5 ICYKCNKPINDKFITRIRDHSWHDQCLRCNQCSCQL--TSKCFELDNEFLCPEDYSRKKFKKCSKCKGPIFPSDKVLYTDSLSIFHQNCFRCNYCDQKLISGDRYYTYSPGSVIVCQFDYNSLKHELFGDDSNCEQINKTEL--IFSDIDSQ-----ENNKGNVFHKFTTIISNYRSRSSSGNLYDDLVSEIDPSVDETYCSDNDKSCEIRRRTPRTTIKASQLDSLKATFSITPKPSRQMREKLAECTGLSMRVIQVWFQNRRSKERRSKLS 268

The following BLAST results are available for this feature:

BLAST of LIM/homeobox protein vs. Ensembl Human
BLAST of LIM/homeobox protein vs. Ensembl Celegans
BLAST of LIM/homeobox protein vs. Ensembl Fly
BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
BLAST of LIM/homeobox protein vs. Ensembl Xenopus
BLAST of LIM/homeobox protein vs. Ensembl Mouse
BLAST of LIM/homeobox protein vs. UniProt/SwissProt
BLAST of LIM/homeobox protein vs. TrEMBL
BLAST of LIM/homeobox protein vs. Ensembl Cavefish
BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
BLAST of LIM/homeobox protein vs. Ensembl Yeast
BLAST of LIM/homeobox protein vs. Ensembl Nematostella
BLAST of LIM/homeobox protein vs. Ensembl Medaka
BLAST of LIM/homeobox protein vs. Planmine SMEST

BLAST of LIM/homeobox protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
LHX9	8.697e-60	37.96	LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222]	[more]
LHX9	1.324e-59	37.96	LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222]	[more]
LHX2	2.401e-56	35.05	LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]	[more]
LHX2	1.302e-53	34.11	LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:6594]	[more]
LHX9	4.606e-49	35.92	LIM homeobox 9 [Source:HGNC Symbol;Acc:HGNC:14222]	[more]

BLAST of LIM/homeobox protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ttx-3	5.149e-49	37.30	LIM/homeobox protein ttx-3 [Source:UniProtKB/Swis...	[more]
ttx-3	6.897e-49	37.30	LIM/homeobox protein ttx-3 [Source:UniProtKB/Swis...	[more]
lim-4	1.774e-34	31.73	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]
lim-4	2.205e-34	31.85	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]
lim-4	1.870e-33	30.62	LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0...	[more]

BLAST of LIM/homeobox protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ap	4.730e-59	37.14	gene:FBgn0267978 transcript:FBtr0086058	[more]
ap	5.086e-59	37.14	gene:FBgn0267978 transcript:FBtr0300504	[more]
Awh	2.838e-34	31.22	gene:FBgn0013751 transcript:FBtr0073155	[more]
Awh	9.721e-34	30.83	gene:FBgn0013751 transcript:FBtr0330071	[more]
Awh	1.019e-33	31.25	gene:FBgn0013751 transcript:FBtr0330070	[more]

BLAST of LIM/homeobox protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lhx2b	3.859e-62	38.52	LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-051220-1...	[more]
lhx2a	7.982e-60	36.88	LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-1...	[more]
lhx9	8.479e-60	36.77	LIM homeobox 9 [Source:NCBI gene;Acc:550405]	[more]
lhx2a	5.410e-58	36.74	LIM homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-091118-1...	[more]
lhx9	6.260e-49	34.73	LIM homeobox 9 [Source:NCBI gene;Acc:550405]	[more]

BLAST of LIM/homeobox protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
zfp36l2	1.127e-59	38.32	ZFP36 ring finger protein-like 2 [Source:Xenbase;A...	[more]
zfp36l2	1.218e-59	38.32	ZFP36 ring finger protein-like 2 [Source:Xenbase;A...	[more]
LHX2	2.803e-59	38.71	LIM homeobox 2 [Source:NCBI gene;Acc:100486746]	[more]
LHX2	3.200e-59	38.71	LIM homeobox 2 [Source:NCBI gene;Acc:100486746]	[more]
zfp36l2	1.174e-49	35.52	ZFP36 ring finger protein-like 2 [Source:Xenbase;A...	[more]

BLAST of LIM/homeobox protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Lhx9	7.791e-60	37.96	LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:...	[more]
Lhx9	1.277e-59	37.96	LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:...	[more]
Lhx2	4.413e-58	35.40	LIM homeobox protein 2 [Source:MGI Symbol;Acc:MGI:...	[more]
Lhx2	1.105e-57	35.40	LIM homeobox protein 2 [Source:MGI Symbol;Acc:MGI:...	[more]
Lhx9	3.299e-49	35.92	LIM homeobox protein 9 [Source:MGI Symbol;Acc:MGI:...	[more]

BLAST of LIM/homeobox protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q80W90\|LHX9_RAT	5.113e-59	37.96	LIM/homeobox protein Lhx9 OS=Rattus norvegicus OX=...	[more]
sp\|Q90881\|LHX9_CHICK	5.657e-59	37.32	LIM/homeobox protein Lhx9 OS=Gallus gallus OX=9031...	[more]
sp\|Q9NQ69\|LHX9_HUMAN	6.358e-59	37.96	LIM/homeobox protein Lhx9 OS=Homo sapiens OX=9606 ...	[more]
sp\|Q1LWV4\|LHX9_DANRE	6.401e-59	36.77	LIM/homeobox protein Lhx9 OS=Danio rerio OX=7955 G...	[more]
sp\|A0JNI8\|LHX9_BOVIN	8.034e-59	37.96	LIM/homeobox protein Lhx9 OS=Bos taurus OX=9913 GN...	[more]

BLAST of LIM/homeobox protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
R7U050	1.049e-63	40.81	Uncharacterized protein (Fragment) OS=Capitella te...	[more]
A7RYP5	6.905e-62	40.15	Predicted protein (Fragment) OS=Nematostella vecte...	[more]
A0A1S4GZT4	9.941e-61	39.07	LIM homeobox protein 2/9 OS=Anopheles gambiae OX=7...	[more]
A0A499FSX8	1.102e-60	39.07	Uncharacterized protein OS=Anopheles arabiensis OX...	[more]
Q49QW5	2.092e-59	39.54	Apterous OS=Euprymna scolopes OX=6613 PE=2 SV=1	[more]

BLAST of LIM/homeobox protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lhx2b	3.146e-61	37.78	LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-051220-1...	[more]
lhx9	1.346e-59	37.63	LIM homeobox 9 [Source:NCBI gene;Acc:103038813]	[more]
lhx9	1.124e-48	33.99	LIM homeobox 9 [Source:NCBI gene;Acc:103038813]	[more]
ENSAMXT00000051669.1	2.213e-46	35.37	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
lmx1ba	3.606e-39	34.44	LIM homeobox transcription factor 1, beta a [Sourc...	[more]

BLAST of LIM/homeobox protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lmo4b	1.930e-21	35.51	LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-03013...	[more]
lmo2	6.348e-21	36.00	LIM domain only 2 (rhombotin-like 1) [Source:NCBI ...	[more]
lmo2	1.555e-20	36.36	LIM domain only 2 (rhombotin-like 1) [Source:NCBI ...	[more]
ENSPMAT00000002189.1	3.411e-15	27.78	pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gen...	[more]
ENSPMAT00000006267.1	7.200e-10	28.26	pep scaffold:Pmarinus_7.0:GL478686:5064:37345:-1 g...	[more]

BLAST of LIM/homeobox protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of LIM/homeobox protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO43354	9.549e-66	40.15	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34370	8.504e-42	32.23	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO46073	6.693e-38	34.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
LHX1	3.635e-33	28.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37316	2.602e-23	39.02	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of LIM/homeobox protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
lhx2b	5.372e-60	38.15	LIM homeobox 2 [Source:NCBI gene;Acc:101154958]	[more]
lhx9	2.847e-59	37.23	LIM homeobox 9 [Source:NCBI gene;Acc:100049461]	[more]
ENSORLT00000039212.1	1.142e-45	38.15	LIM/homeobox protein Lhx2-like [Source:NCBI gene;A...	[more]
isl1	6.601e-39	33.46	ISL LIM homeobox 1 [Source:NCBI gene;Acc:101165983...	[more]
ENSORLT00000016493.2	1.180e-38	33.74	LIM/homeobox protein Lhx8 [Source:NCBI gene;Acc:10...	[more]

BLAST of LIM/homeobox protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000001774.1	0.000e+0	100.00	SMESG000001774.1	[more]
SMESG000010916.1	1.233e-70	43.21	SMESG000010916.1	[more]
SMESG000005304.1	1.725e-28	29.21	SMESG000005304.1	[more]
SMESG000071273.1	1.398e-26	29.46	SMESG000071273.1	[more]
SMESG000022856.1	2.212e-26	30.04	SMESG000022856.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30023015 ID=SMED30023015|Name=LIM/homeobox protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1133bp
CCAGTCACAATCAAGATCGCTCAATGTGCAATTCGAATTGAATAAATTTA
TATTATTCGATTAATTGAGTATTTGATAATGGACAACAAAAATAATGCTC
AAAGGCTTTTATGCAGTGGCTGCGAATGCGTAATTACGGACAAATATTAT
CTACGGACTGATGAGCATGTTTGGCACGGATCTTGCCTCAAGTGTGACAT
TTGCGAACAATCGCTTGACAAAACAAATTCATGCTACAAACGCAACGGAA
CTTTCTACTGCCAGCATGACTACTTCCGAATTTATCAACAGCGAAAATGT
GCAAAGTGTCAGGAACACATTGAACACAAGGAAATGGTGATGAAAGTTCT
TAATTCAGTGTTCCACATTCATTGTTTTATCTGCGGCGTGTGCGGCAAGA
GACTTAATTCAGGTGAATATTTCCTCCTCAATGGCAATATTCTATTTTGT
CAAGATGAGATCAGGAAGAGCAGCATTTCCACTATTTTTTCTGGTATTCA
ATCTGATTTCAGACTTGGTTTGCAGAACAATCAGAGCCTTTTCGAATCAA
TTTTCAGTAAATCTAAACCACGAAGGCCAATCGGAGTTCTAGATGATGAG
GTTCAGCTAAATATCAGCCCTAGGCATCAGGATTTTGTAATGATGGGCAT
TAGCAAACAGAAAAGGCTCAGAACGTCCTTCAAGCATCATCAAGTGAGAG
TAATGCGCACCTATTTCTCACTGAATCACAACCCCGACACGAAAGATCTG
AAGACATTATCAGAAAAAACAGGTCTTTCAAAAAGAGTTCTGCAAGTCTG
GTTCCAAAACGCGCGAGCGAAATTTCGTCGTAGTGGTCTCAGTAAATCGG
ATACGAACTCCCAGACGAACGAGGACATACTCGACTCAACACTATCATAC
AGCGACGATACGTCGTCACAAGAGGTCATCAACAAGGAAAATGAATCTGA
TGAAAGATGAGTTTAAAGATGAGAAATTGACTGGAACATAGAGAGAAAGT
TTCACTTATTTGTGACATTTATTTGTGGTTATTTATTGATTGATCCGAAT
GATTCTCGGTTTTACAGAGACTATTTTGATTAAATTGATTATGCTTATCT
ATACCAAATGTTTACTCACAGAACGGTGCTAGC

protein sequence of SMED30023015-orf-1

>SMED30023015-orf-1 ID=SMED30023015-orf-1|Name=SMED30023015-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=294bp
MDNKNNAQRLLCSGCECVITDKYYLRTDEHVWHGSCLKCDICEQSLDKTN
SCYKRNGTFYCQHDYFRIYQQRKCAKCQEHIEHKEMVMKVLNSVFHIHCF
ICGVCGKRLNSGEYFLLNGNILFCQDEIRKSSISTIFSGIQSDFRLGLQN
NQSLFESIFSKSKPRRPIGVLDDEVQLNISPRHQDFVMMGISKQKRLRTS
FKHHQVRVMRTYFSLNHNPDTKDLKTLSEKTGLSKRVLQVWFQNARAKFR
RSGLSKSDTNSQTNEDILDSTLSYSDDTSSQEVINKENESDER*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000421	tail
PLANA:0002075	pigment cell

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR001781	Znf_LIM
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0008270	zinc ion binding
GO:0043565	sequence-specific DNA binding
GO:0046872	metal ion binding

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0007411	axon guidance
GO:0007420	brain development
GO:0007634	optokinetic behavior
GO:0009416	response to light stimulus
GO:0010468	regulation of gene expression
GO:0021537	telencephalon development
GO:0021554	optic nerve development
GO:0021794	thalamus development
GO:0030900	forebrain development
GO:0031290	retinal ganglion cell axon guidance
GO:0043010	camera-type eye development
GO:0071632	optomotor response

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 11..64 e-value: 6.3E-12 score: 55.6 coord: 73..127 e-value: 5.8E-13 score: 59.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 12..67 e-value: 2.7E-12 score: 46.7 coord: 74..127 e-value: 2.4E-14 score: 53.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 12..46
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 74..109
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 10..71 score: 13.127
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 72..134 score: 12.355
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 194..256 e-value: 1.3E-19 score: 81.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 195..251 e-value: 9.0E-17 score: 60.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 192..252 score: 16.601
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 195..252 e-value: 1.68312E-16 score: 70.35
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 190..255 e-value: 5.4E-25 score: 89.0
None	No IPR available	GENE3D	G3DSA:2.10.110.10		coord: 1..67 e-value: 5.2E-13 score: 50.7
None	No IPR available	GENE3D	G3DSA:2.10.110.10		coord: 68..153 e-value: 2.4E-17 score: 65.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..281
None	No IPR available	PANTHER	PTHR24208:SF168	PROTEIN APTEROUS	coord: 3..282
None	No IPR available	PANTHER	PTHR24208	FAMILY NOT NAMED	coord: 3..282
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 7..37
None	No IPR available	SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 38..105
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 227..250
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 185..251

Main menu

LIM/homeobox protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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