Sodium-dependent glucose transporter 1-like

Overview
NameSodium-dependent glucose transporter 1-like
Smed IDSMED30023014
Length (bp)1619
Neoblast Clusters

Zeng et. al., 2018




 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30023014

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pigment cellSMED30023014h1SMcG0008846 SmedASXL_015725SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017
whole organism asexual adult RNA-sequencing evidence
pigment cellSMED30023014h1SMcG0008846 SmedASXL_015723SmedAsxl_ww_GCZZ01PMID:29158443
He et al., 2017
whole organism asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30023014h1SMcG0008846 Contig41430uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30023014h1SMcG0008846 Contig41430newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
cephalic gangliaSMED30023014h1SMcG0008846 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023014h1SMcG0008846 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30023014h1SMcG0008845 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30023014h1SMcG0008845 dd_Smed_v4_6092_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
tail regionSMED30023014h1SMcG0008845 dd_Smed_v6_6092_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
tail regionSMED30023014h1SMcG0008846 dd_Smed_v6_6092_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
pigment cellSMED30023014h1SMcG0008845 dd_Smed_v6_6092_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pigment cellSMED30023014h1SMcG0008846 dd_Smed_v6_6092_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Xenopus
Match: pax8 (paired box 8 [Source:Xenbase;Acc:XB-GENE-483693])

HSP 1 Score: 50.0618 bits (118), Expect = 7.696e-6
Identity = 30/130 (23.08%), Postives = 61/130 (46.92%), Query Frame = 2
Query:  158 LLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYH 547
            +L   F+G+  G+   +  PT P+L   +  S   +  +   RSMG +   I+ G +++    ++   +S+     GL   ++PWCK+   +  +  +   +  F+  G  V I+  ++D+A   +Q  H
Sbjct:   76 VLCAAFLGL--GMAIAVLGPTFPDLAANVESSIANISFIFVGRSMGYLGGSILGGVLFEQMNQHLLLGLSMLATAAGL--YVVPWCKRAVFLTAVMSVVGMSMGFLDTGGNVIILNTWEDQAGPHVQALH 201          
BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Mouse
Match: Mfsd4b5 (major facilitator superfamily domain containing 4B5 [Source:MGI Symbol;Acc:MGI:2446139])

HSP 1 Score: 49.2914 bits (116), Expect = 9.650e-6
Identity = 31/137 (22.63%), Postives = 62/137 (45.26%), Query Frame = 2
Query:  137 NWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYH 547
             W+   ++L   F+G+  G+   +  PT P+L   +N +   +  +   R++G +   +V G ++D    ++   +S    I GL   + P+CK   L+  +  +   +   +  G  V I+ ++ DK    MQ  H
Sbjct:   34 RWFTT-VVLNAAFLGM--GVSAAVLGPTFPDLARNVNRNVSSLSEIFVGRALGYLCGSVVGGVLFDCMNHFLLLGLSNLLTIAGL--YLTPFCKTAALLTTMMSVTGVSFGVLDTGGNVLILDLWGDKGAPHMQALH 165          
BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Match: A0A1S3J6U5 (sodium-dependent glucose transporter 1-like OS=Lingula unguis OX=7574 GN=LOC106170691 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.299e-26
Identity = 120/439 (27.33%), Postives = 209/439 (47.61%), Query Frame = 2
Query:  203 EIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLS-FEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSI-HPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLS-GRIFGSIFAQF-NPTAMILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPK 1507
            E+  PTL +L +K++ SYE + R +  RS+G   +  V G++ D FP +V   ISVA F+  + T+ IPWC +   + +L   Q  ++  +  G   T + ++ +K  A M   H G+GIGGL S  I++PFL+ ++     + +      NET   Q   ++  +  ++  ++  NLS  EY Y I+  +A+L +I  + +  +P P   +     ++  IK+I HP   A     FG  M  LL  +Y     G      ++  +A D    +   Q T   L  +++  F + GR    + A+F  P  M++   S N++   VL        I  WI    +    + V+P+G S+ NR++ +S   ++I  LG + G    Q+  G + D      ++Y   G   +L    +++ ++ SR G R F++D   K
Sbjct:   11 ELPGPTLKDLMKKVDSSYEEISRALIARSVGFFISSFVGGFLCDRFPKHVDIFISVAMFVNAVTTVSIPWCHELIPLAILMHFQGLSEGVLNTGGMTTCLNLWGEKVSAPMHSTHFGWGIGGLFSTQIARPFLSPDVFLPEDVKS------NETVVFQ---ATTSSLSANITLDATNLSRIEYAYAISATLALLMSIVFLLFYILPPPRGFQLATIPKKNDIKAIFHPASCAQDNTMFGLIMFPLLLWFYMHITGGERAVAKFLFSFAKDSELLFNNDQAT---LALSLHWIFYTIGRGLAIVVAKFVPPRYMLIGEISMNIISGSVLSALGYKNEIVFWIFNALLGLFLAPVFPSGVSWANRYLDMSGIAVAIVLLGASGGGFVYQWITGALFDAIGPNALMYVMTGDGLLLAQSYVTLQIIASRQGDR-FTKDSDAK 436          
BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Match: A0A1S3H3F7 (sodium-dependent glucose transporter 1A-like OS=Lingula unguis OX=7574 GN=LOC106151118 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.295e-21
Identity = 121/480 (25.21%), Postives = 219/480 (45.62%), Query Frame = 2
Query:  155 LLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETG-FNQFGXXXXXXXXXXXQIEN--------KNLSFEYIYLITGV----IAMLFAITNISYS-FVPKPNKDKCQIKKR----EPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTA-MILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKTL-DKFESPK 1534
            + L+L ++G+  GL  EI  PT+ +L  +   +YE + R +S RS G     ++ G++ D    Y   MI V+  I    ++ +PW     L+  +FF+Q   +  +    Q  I+ I+   A + + + H G+GIG ++  LI+ PFL        + T +    +N T  F      +      ++   N        +    EY YLI  +    +++ F +    YS +V  P   + + KKR    + +I+ I+P   ANG  CFG  M ILL  Y+F    G   +  +I  YAID   ++  +   + YL+      +  GR  G I A + P   +I+      ++  ++L  + +   + LWI    M F  + ++P+G +  + ++ +S   I++  LGG+ G I   F  G++ +N+     +Y   G    ++ +   + V+G   G R   ED+  +++ D  E+ K
Sbjct:   32 VFLILTWVGL--GLSLEISGPTMQDLILRTGTNYEEVSRAISGRSAGFFTGAVIGGFLVDKLRLYCDLMIGVSLVIMSAGSVAVPWSPWTGLIWFIFFLQGTCEGVINIAGQKLILSIWGKNAASPLHVLHTGFGIGSMIVPLIANPFL-----ANIQTTTFTNTSMNVTSVFTTALPPTMSTLEYTTDTSNSTTITRVLRESRIEYAYLIVAILVTTLSLAFFVYQWKYSEYVLHPADHETESKKRVHGVKEFIRIINPATCANGNFCFGLQMFILLSFYFFQATGGERLYGKFIRSYAID---QFNFSVDEASYLNVVFWISYSLGRFSGFIVAHWVPIRFLIIIEAVGVLISAILLNIWGHTEPLMLWIFTQPMAFFIAPLFPSGIALGDHYVEMSGLAITVLLLGGSVGGIAYLFLIGYLYENFGPSMFMYNVLGFGIAVVVMVALLSVVGHLHGDRYQREDETEQSIGDMKEADK 501          
BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Match: A0A1S3JSZ7 (sodium-dependent glucose transporter 1A-like OS=Lingula unguis OX=7574 GN=LOC106175680 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.070e-21
Identity = 119/474 (25.11%), Postives = 215/474 (45.36%), Query Frame = 2
Query:  167 LIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFL-----TKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGV----IAMLFAITNISYS-FVPKPNKDKCQIKKR----EPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTA-MILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKT------LDKFE 1525
            LI   +  GL  EI  PT+ +L  +   +YE + R +S RS G     ++ G++ D    Y   MI V+  I    ++ +PW     L+  +FF+Q   +  +    Q  I+ I+   A + + + H G+G+G ++  LI+ PFL     T   +    IT+     L  T  +    ++     ++     +    EY YLI  +    +++ F +    YS +V  P   + + KKR    + +I+ I+P   A+G  CFG  M ILL L++F  + G   +  +I  YAID       +   + YL+      F  GR  G I A + P   +I+   +  ++  ++L  + +   + LWI    M F  + ++P+G +  + ++ +S   I++  LGG+ G I   F  G++ +N+     +Y   G    ++ +   + V+G   G R   ED+  ++      +DK E
Sbjct:   34 LILTWVCLGLSLEISGPTMQDLILRTGTNYEEVSRAISGRSAGFFTGAVIGGFLVDKLRLYCDLMIGVSLVIMSAGSVAVPWSPWTGLIWFIFFLQGTCEGVINIAGQKLILSIWGKNAASPLHVLHTGFGVGSMIVPLIANPFLANIQTTTLTNTSMNITSVFTTALPPT-LSSLEYTTDATISTTITRVLRESRIEYAYLIVAILVTTLSLAFFVYQWKYSEYVLHPADHETESKKRVHGVKEFIRIINPATCADGNFCFGLQMFILLSLHFFNAVGGERLYGKFIRSYAIDQLN---FSGDEASYLNVVFWISFSVGRFSGFIVAHWVPVRFLIIIEAAGVLISAILLNIWGHTEPLMLWIFTQPMAFFIAPLFPSGIALGDHYVEMSGLAITVLLLGGSIGGIAYLFLIGYLYENFGPSMFMYNVLGYAIAVVVMVALLSVVGHLHGDRYQREDETERSIGDMKKMDKLE 503          
BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Match: R7TKM4 (Uncharacterized protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_43971 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.480e-19
Identity = 101/429 (23.54%), Postives = 201/429 (46.85%), Query Frame = 2
Query:  215 PTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTXXXXXXXXXXXXXXXXXDY-AIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDK 1498
            PTL +L+++L V+YE + + +  + +G+I   ++ G++ + F  ++   ++++  +     ++IP+     L   +F +   A+  +  G    +M ++ + A + M   H G+G+G L++  I++PFL+ +        +Y   +        F +++    I  SQIE         Y+I G    LFA+  + + ++  P K     + +  + + ++P   ANG+ CFG  + + LFLYY   + G   +  ++  YA+D   K  M +  +  L +   A F +GR+ G +  +F P   ++  N    +    +L    +  A  LW+ +C M    S+ +P G S+ N  + ++S  + I  +GG  G     +  GF+ D  P   ++Y   G    LL + + + +L      RNF E++
Sbjct:    1 PTLVDLRQRLGVNYEEISQALLAKGVGSIFGALLGGFINERFYNHLDLSMAISLLLIAAACVVIPYSGTVVLAGTMFAVNGLAEGLINTGGNTMVMHLWGEDAASPMNSLHFGFGLGALIAPQIARPFLSPD------ALDYDDDVTTMPTTTMFSNTTEAPKIDESQIEIP-------YIIAGCAVALFALFMVGF-YIRGPPKGFHLHQPKSNFREMVNPGSCANGRTCFGVQLLVALFLYYIQTVGGERAYGKFLFSYAVDSDIK--MKKSEASNLQTVFWASFTAGRLSGVLIGKFVPLRYVMIGNVIGNVITASILAGFAEQNATILWVFSCIMGALISIAFPNGMSWANLHLKMNSMSVMILVIGGGCGDFTYNYLTGFLFDKDPQ-NLMYVMVGYAVFLLAVYVLMELLACLND-RNFVENQ 411          
BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Match: A0A1S3K6K3 (sodium-dependent glucose transporter 1A-like OS=Lingula unguis OX=7574 GN=LOC106179267 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.302e-18
Identity = 104/438 (23.74%), Postives = 202/438 (46.12%), Query Frame = 2
Query:  191 GLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTA-MILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSR-AGVRNFSEDK 1498
            GL+ E+  P+LP LK +++ S+E + R +  RS+G     +  G + D F  +V  ++ +   +  + T  IPWC    L+  +FF+Q  A+  +  G    I +++ +++ + M   H GYG+G +L+  + +PFL   I++    + Y     N +  +  G    R     S I + +   E  + I   IA++ A+T + +   P P   K +   +  +     P     G   +G TM ILLF+++     G   +  ++  +A     ++ +   T  +L+S   A F +GR  GS+ A + P   MI+   +   +  +VL       +  LW   C +   ++ ++P G ++ N ++ ++S   ++  +G  TG    Q+  G + D Y    ++Y    +  +LL +   ++ L +R  G R  ++D 
Sbjct:   44 GLYSELSGPSLPVLKARVDSSWEEISRALIGRSVGFFTGSLAGGVICDRFHKHVDLVLMLVLLLASVSTAAIPWCPLMELLAFVFFLQGFAEGIINAGGNTAIFKLWGERSASPMHSLHFGYGVGAILAPQLIRPFLIP-ITRNVT-SGYLETYGNLSNQSDIG---DREIEGDSSIPSADSPIEVAHFIGAGIALVMALTFLFFYLRPPPAGFKLKNPVKNAYRSLCSPASCGQGSAVYGLTMLILLFVFFMDVAGGERVWGKFVFSFATQGTLRFTIDDGT--FLNSLYWAFFTAGRGLGSVVAHWVPVRYMIVAEIAVINVTGIVLSSAGYRISEVLWACNCVLGLFHAPLFPGGMAWANLYLEMTSVATAVLLIGSATGGFVYQWITGALFDVYGPDSLVYVVL-AFAVLLAVKFLVMNLVARIKGTRFGNQDS 473          
BLAST of Sodium-dependent glucose transporter 1-like vs. Planmine SMEST
Match: SMESG000076464.1 (SMESG000076464.1)

HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 443/476 (93.07%), Postives = 459/476 (96.43%), Query Frame = 2
Query:  110 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKTLDKFESPKW 1537
            MSI++   K +YQNGLLL+L+ +GI+PGLW EI TPTLPNLKEKLNVSYE+MG+MMS+RS GNI ALI TGYVYD+FP+YV  + S ACF GG CTL+IPWCKQFW+VVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHLGYGIGGLLSGLISQPFLTKEISKKAKITNYCRKLLNETGFNQFGSSSPRNNISSSQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTILLFLYYFIYIFGLLNFLPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTFNSFNVLFV VLLFFSNDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQ+TGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKTLDKFESPKW
Sbjct:    1 MSIKVPSYKTFYQNGLLLILVCLGISPGLWDEIVTPTLPNLKEKLNVSYEIMGKMMSMRSFGNIVALITTGYVYDTFPSYVAYITSAACFTGGCCTLLIPWCKQFWVVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHLGYGIGGLLSGLISQPFLTKEISKKAKITNYCRKLLNETGFNQFGSSSPRNNISSSQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTILLFLYYFIYIFGLLNFLPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTFNSFNVLFVFVLLFFSNDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQYTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKTLDKFESPKW 476          
BLAST of Sodium-dependent glucose transporter 1-like vs. Planmine SMEST
Match: SMESG000076465.1 (SMESG000076465.1)

HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 401/472 (84.96%), Postives = 431/472 (91.31%), Query Frame = 2
Query:  110 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVRNFSEDKRPKTLDKFE 1525
            MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQS  QN M NGAQ+ I++ FK+KAV KMQIYHLGYGIGGLLSGLISQPFL+K +S+ AKIT YCRK+LNET   Q   S   +NISS QIEN+ LSFEYIY+I GV+A+L AI N +YSF+P P+ +K QIKKREPWIKSIHPKYTANGKICFGTTMTILL+LYYF YIFGLLNFLPYIVVYAIDPCKKYYMTQKTS YLHSAVNACFL GRIFGSIF+QFNPTAMILTFNSFNVLFV VLLFFSNDYAIALWIGACGMRFCNSVVYPTGTSY NRFIIVSSTLISIAFLGGTTGVIFGQ+TGGFIIDNYPSYCILYTCFGSMCMLLG+T+ I++LGS+ G+R FSED + +  ++F 
Sbjct:    1 MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSGFQNSMNNGAQLIILKTFKEKAVGKMQIYHLGYGIGGLLSGLISQPFLSKSVSRNAKITKYCRKVLNETELGQIVPSIIGSNISSIQIENRRLSFEYIYVIAGVVAILIAIVNFAYSFLPNPDAEKYQIKKREPWIKSIHPKYTANGKICFGTTMTILLYLYYFFYIFGLLNFLPYIVVYAIDPCKKYYMTQKTSAYLHSAVNACFLIGRIFGSIFSQFNPTAMILTFNSFNVLFVFVLLFFSNDYAIALWIGACGMRFCNSVVYPTGTSYINRFIIVSSTLISIAFLGGTTGVIFGQYTGGFIIDNYPSYCILYTCFGSMCMLLGVTVLIIILGSQTGLRAFSEDLKNEKQEEFN 472          
BLAST of Sodium-dependent glucose transporter 1-like vs. Planmine SMEST
Match: SMESG000076463.1 (SMESG000076463.1)

HSP 1 Score: 295.434 bits (755), Expect = 2.660e-94
Identity = 178/443 (40.18%), Postives = 280/443 (63.21%), Query Frame = 2
Query:  155 LLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHXXXXXXXXXXXXXXQPFLTKEISKKAKITNYCRKLLNETGFNQFGXXXXXXXXXXXQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIK-KREPWIKSIHPKYTANGKICFGTTMTXXXXXXXXXXXXXXXXXXPYIVVYAIDPCKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTXXXXXXXXXXXXXXXXXDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLISIAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVLGSRAGVR 1480
            L+ +L+ +G+  G+ QE+ TPTLPN++ + NVSYE +G ++SLR +GNI   +   Y+YDS+P  +   +   C I G+CT++IPWC+ F LV  + + QS   + + N  Q+T++R FK K++++MQ+YH G+GIG LLSG I+ PF+  +    +K+T YC + L     N    S      SS ++ N   S+ + ++I+G I++      + +  + K  + + Q K     W++ I+PKY +NG+  FG ++TIL+  YYF Y+ G    +P+I+VYAIDPCK+Y+++Q+ + YLHS++N CF+  ++  S      P  ++L FN FNV+F+ VL F  N + IALWI   GMR CNSVVYPTGT+Y NR++ +SS  I+I F+G T GVI GQ  GG ++DN+ S  I+Y C G M  L  +++ ++ L ++ GV+
Sbjct:   16 LIAILVMLGLVIGICQEMMTPTLPNIRSQFNVSYETLGTVLSLRGLGNIIFTLSASYLYDSYPQSLNHFMISECIISGVCTILIPWCRYFSLVTFVIYFQSGFLSALHNACQLTVLREFKTKSISRMQLYHTGFGIGRLLSGFIAAPFVANKSGGLSKLTKYCNEKLQLERLND-EVSVNVKIYSSIELGNHENSYVFAFMISGSISIFIGFMFLLFQSLVKLPESRNQKKISATSWLEKINPKYLSNGQTYFGISITILIAFYYFFYLAGQSVLMPFIIVYAIDPCKQYFISQRKATYLHSSLNGCFILSQLLTSFLLDKYPAHILLLFNFFNVIFIAVLCFLGNQFEIALWICLSGMRICNSVVYPTGTAYLNRYVAISSGFITITFIGSTIGVIVGQSVGGVLLDNFASIFIIYACCGFMSALFIVSVIVIFLVNKFGVQ 457          
BLAST of Sodium-dependent glucose transporter 1-like vs. Planmine SMEST
Match: SMESG000015183.1 (SMESG000015183.1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.435e-9
Identity = 45/175 (25.71%), Postives = 81/175 (46.29%), Query Frame = 2
Query:   26 RI*RDSEFQLN-LIVYDQVD*NYNEILGQMSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYEVMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIPWCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYH 547
            RI  ++  +LN L   ++++  +NEI    S RIT LK  Y+     VL    I+ GL+ EI  P LP L+     ++E + R +S R+ G +   ++ G + D F  +   +I +   + G+    IP C+   ++    FI   +    T     ++  ++K+K+       H
Sbjct:    5 RIISNASEELNYLNSSNKIENGFNEI--SQSKRITHLK--YRLIKTFVLFLSWISLGLFSEIIGPALPALRIISGTNHEEISRALSSRAAGLLIGSLIGGVLADQFIKFRNLLIFIFLSLAGITVATIPLCQSLLILAFNLFISGFSHGAFTTSGNPSLGALWKEKSTGPFNFMH 175          
The following BLAST results are available for this feature:
BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pax87.696e-623.08paired box 8 [Source:Xenbase;Acc:XB-GENE-483693][more]
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Mfsd4b59.650e-622.63major facilitator superfamily domain containing 4B... [more]
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BLAST of Sodium-dependent glucose transporter 1-like vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1S3J6U52.299e-2627.33sodium-dependent glucose transporter 1-like OS=Lin... [more]
A0A1S3H3F76.295e-2125.21sodium-dependent glucose transporter 1A-like OS=Li... [more]
A0A1S3JSZ77.070e-2125.11sodium-dependent glucose transporter 1A-like OS=Li... [more]
R7TKM45.480e-1923.54Uncharacterized protein (Fragment) OS=Capitella te... [more]
A0A1S3K6K31.302e-1823.74sodium-dependent glucose transporter 1A-like OS=Li... [more]
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Sodium-dependent glucose transporter 1-like vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000076464.10.000e+093.07SMESG000076464.1[more]
SMESG000076465.10.000e+084.96SMESG000076465.1[more]
SMESG000076463.12.660e-9440.18SMESG000076463.1[more]
SMESG000015183.13.435e-925.71SMESG000015183.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30023014 ID=SMED30023014|Name=Sodium-dependent glucose transporter 1-like|organism=Schmidtea mediterranea sexual|type=transcript|length=1619bp
GATTGATGTACTTTATGCGCGTTGGCGAATCTGACGAGATTCCGAATTTC
AATTAAATCTCATTGTTTATGACCAAGTCGACTAGAACTACAACGAGATT
TTAGGTCAAATGTCAATTAGGATTACTTTTTTAAAGAATTGGTATCAGAA
TGGTCTACTCTTGGTACTGATCTTCATTGGAATAGCGCCGGGCTTATGGC
AGGAAATATTCACTCCAACATTGCCGAATTTGAAAGAGAAATTAAATGTG
TCGTATGAAGTCATGGGGAGAATGATGTCCTTGAGAAGCATGGGAAATAT
TGCGGCATTAATAGTGACAGGATACGTTTATGATTCTTTTCCTGCCTATG
TGGGATCTATGATATCCGTCGCCTGCTTTATCGGAGGATTGTGTACCTTA
ATCATCCCTTGGTGTAAACAGTTTTGGTTGGTTGTTGTACTCTTTTTTAT
TCAATCTGCGGCTCAAAACTTTATGACAAACGGAGCTCAAGTGACAATAA
TGAGGATATTCAAGGATAAGGCAGTGGCTAAAATGCAAATATATCATTTA
GGATATGGAATAGGAGGATTGCTGTCAGGGTTGATATCTCAACCGTTTTT
GACAAAGGAAATTTCTAAAAAAGCCAAAATTACAAATTATTGTCGAAAGC
TTCTTAATGAAACAGGCTTCAACCAGTTCGGTTCTTCAAGTCCTAGAAAC
AACATCAGCTCTAGTCAAATAGAAAATAAAAATTTATCCTTCGAATACAT
TTATTTGATTACTGGCGTAATTGCAATGTTATTTGCAATTACAAATATTT
CCTACAGCTTTGTACCAAAGCCCAATAAGGATAAATGCCAAATCAAGAAA
AGAGAGCCTTGGATTAAGAGCATTCATCCGAAATATACGGCAAATGGAAA
AATATGTTTTGGAACGACTATGACAATCTTGTTATTTCTATACTATTTTA
TTTACATTTTTGGTCTTTTGAACTTTCTACCTTACATCGTAGTTTACGCC
ATTGACCCGTGCAAGAAATATTACATGACCCAAAAGACCTCAGTATATCT
CCATTCGGCTGTCAACGCCTGTTTTTTAAGTGGACGGATATTTGGTAGCA
TTTTTGCACAATTTAACCCCACAGCGATGATTTTAACCTTTAACTCTTTT
AATGTTTTGTTTGTTTTGGTTTTATTATTTTTCAGTAACGACTATGCAAT
CGCCTTGTGGATCGGAGCATGCGGAATGAGATTCTGCAATTCCGTTGTGT
ATCCAACTGGAACCAGCTATACAAATCGGTTTATAATTGTGTCCAGCACC
TTGATATCCATTGCATTTCTTGGAGGCACAACGGGGGTCATATTCGGGCA
GTTCACCGGAGGATTTATAATTGATAATTATCCTTCTTATTGTATTCTGT
ATACTTGTTTTGGGTCCATGTGTATGCTGCTTGGGATCACAATTTCAATT
GTTGTTTTAGGATCGCGAGCTGGAGTAAGAAATTTTTCGGAGGATAAAAG
ACCAAAAACCTTGGACAAGTTTGAATCCCCTAAATGGTGAATTCGATCAT
TAGTAGTTACAATATTTGCATCTGTTATTATCAGTAAATATTTCCGATTT
AAAAAAAAAGATCGGAAGA
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protein sequence of SMED30023014-orf-1

>SMED30023014-orf-1 ID=SMED30023014-orf-1|Name=SMED30023014-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=477bp
MSIRITFLKNWYQNGLLLVLIFIGIAPGLWQEIFTPTLPNLKEKLNVSYE
VMGRMMSLRSMGNIAALIVTGYVYDSFPAYVGSMISVACFIGGLCTLIIP
WCKQFWLVVVLFFIQSAAQNFMTNGAQVTIMRIFKDKAVAKMQIYHLGYG
IGGLLSGLISQPFLTKEISKKAKITNYCRKLLNETGFNQFGSSSPRNNIS
SSQIENKNLSFEYIYLITGVIAMLFAITNISYSFVPKPNKDKCQIKKREP
WIKSIHPKYTANGKICFGTTMTILLFLYYFIYIFGLLNFLPYIVVYAIDP
CKKYYMTQKTSVYLHSAVNACFLSGRIFGSIFAQFNPTAMILTFNSFNVL
FVLVLLFFSNDYAIALWIGACGMRFCNSVVYPTGTSYTNRFIIVSSTLIS
IAFLGGTTGVIFGQFTGGFIIDNYPSYCILYTCFGSMCMLLGITISIVVL
GSRAGVRNFSEDKRPKTLDKFESPKW*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0008643carbohydrate transport
GO:0055085transmembrane transport
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: molecular function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002075pigment cell
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR011701MFS
IPR020846MFS_dom
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1250.20coord: 10..111
e-value: 4.4E-6
score: 28.2
NoneNo IPR availablePANTHERPTHR23121FAMILY NOT NAMEDcoord: 16..110
NoneNo IPR availableCDDcd17325MFS_MdtG_SLC18_likecoord: 14..111
e-value: 0.00554541
score: 32.9332
NoneNo IPR availableTMHMMTMhelixcoord: 79..101
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 55..74
IPR036259MFS transporter superfamilySUPERFAMILYSSF103473MFS general substrate transportercoord: 8..110