RNA polymerase-associated protein RTF1-like protein

Overview


Name	RNA polymerase-associated protein RTF1-like protein
Smed ID	SMED30022937
Length (bp)	3119

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA polymerase-associated protein RTF1-like protein (SMED30022937) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA polymerase-associated protein RTF1-like protein (SMED30022937) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA polymerase-associated protein RTF1-like protein (SMED30022937) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30022937

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 14

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30022937	h1SMcG0009445	SmedASXL_002760	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
neoblast	SMED30022937	h1SMcG0009445	GU562964	smed_ncbi_20240424	PMID:20215344 Fernandéz-Taboada et al., 2010
parenchyma	SMED30022937	h1SMcG0009445	GU562964	smed_ncbi_20240424	PMID:20215344 Fernandéz-Taboada et al., 2010
pharynx	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30022937	h1SMcG0009445	dd_Smed_v4_887_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
X1 cell	SMED30022937	h1SMcG0009445	isotig14565	be_Smed_v2	PMID:22543868 Onal et al., 2012
neoblast	SMED30022937	h1SMcG0009445	dd_Smed_v6_887_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
neoblast	SMED30022937	h1SMcG0009445	GU562964	smed_ncbi_20240424	PMID:21356107 Fernández-Taboada et al., 2011

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Match: RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996])

HSP 1 Score: 232.261 bits (591), Expect = 5.870e-64
Identity = 151/389 (38.82%), Postives = 218/389 (56.04%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL--NYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E+   +    DPF R   KP +  N R    Q    A L A      +      +S      ++++ K    D S+ ++  +H+F+V +D++  ++    +K ++ T K    KD                            RR LNL+DYK+R+GLI
Sbjct:  357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS-KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSK-SASDLSE-DLFKVHDFDVKIDLQVPSSE---SKALAITSKAPPAKDGA-------------------------PRRSLNLEDYKKRRGLI 710

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Match: RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996])

HSP 1 Score: 137.117 bits (344), Expect = 1.792e-36
Identity = 74/151 (49.01%), Postives = 100/151 (66.23%), Query Frame = 2

Query: 1652 TRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNRE 2104
            TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE
Sbjct:    3 TRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNRE 152

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Match: SNRPN (small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:HGNC:11164])

HSP 1 Score: 103.605 bits (257), Expect = 8.645e-25
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Match: SNRPB (small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:HGNC:11153])

HSP 1 Score: 104.76 bits (260), Expect = 1.603e-24
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  GIG+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Match: SNRPB (small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:HGNC:11153])

HSP 1 Score: 104.76 bits (260), Expect = 2.083e-24
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  GIG+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Celegans
Match: rtfo-1 (RNA polymerase-associated protein RTF1 homolog [Source:UniProtKB/Swiss-Prot;Acc:G5EBY0])

HSP 1 Score: 142.51 bits (358), Expect = 5.553e-35
Identity = 82/220 (37.27%), Postives = 127/220 (57.73%), Query Frame = 2

Query: 1442 KVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNR 2101
            K V+ L  L + RLSRHK+   +H PFF   V GC+VR+  G+       YR  +I  V E+ K+Y+L   +TN  +K + G S   FR+ FVSN DF+  EFD W       G  LP +  +++K Q I++  N   +D++ +  ++  K ++Q  P NFAM KA  ++ K  A+  GD  +A++ Q +IDE+   A++LE++R+  I  I++IN RNR
Sbjct:  250 KDVDGLSELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGSGSKYRIWKIVGVEESNKVYELEGKKTNKIIKCQNGGSERPFRMQFVSNADFEQIEFDEWLLACKRHGN-LPTVDIMDKKKQDIEKAINHKYSDKE-VDLMIKEKSKYQTVPRNFAMTKANWSKQKELAQQRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNR 467

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Celegans
Match: snr-2 (Probable small nuclear ribonucleoprotein-associated protein B [Source:UniProtKB/Swiss-Prot;Acc:P91918])

HSP 1 Score: 91.6633 bits (226), Expect = 4.117e-21
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDST 336
            M + K+ K+  HL YRM+  LQDGR  +G FKAFDKHMN++L +C+E R++K   G + + EEKR LG VL+RGE +VS+ VDGPPP +D +
Sbjct:    1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTVDGPPPRDDDS 92

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Match: Rtf1 (gene:FBgn0034722 transcript:FBtr0071820)

HSP 1 Score: 180.644 bits (457), Expect = 1.164e-46
Identity = 125/394 (31.73%), Postives = 197/394 (50.00%), Query Frame = 2

Query: 1448 VETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIK---EENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            + T E L+K+RLSR+KME++V++P F+  V  CFVR++IG     +P+YR AEI  VVET KIY LGTTRTN GL+LK G     FRL F+SNQ+F  +EF+ W        + +P +  I  K   IK+  N+   DE  + K++  K RF+  P N+AM+K  L + +  A   GD D A+    +IDEL   A +L+++R+  +  ISYIN RNR+       +   LE     +  K+  DPF R  T+P + ++  K+   +             ++     +++  ++          D    ++ ++H+F++ LD+      N+ P  A   +ET                                   ++R LNL+DYK+++GLI
Sbjct:  428 ITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNN-GQKPVYRVAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQSHVQMPTIDLIAIKQNDIKKALNYEFKDED-VDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRK-KNVEDAEKAILEEARANKGLKI-SDPFTRRITQPRMGFKGAKKDEDDMQLAPLPPPPPGKKRPNEAGTSSASVRS--------TDSKDYSLYSLHDFDIDLDVPLPVNTNSVPKPASKPAET----------------------------------VSKRSLNLEDYKKKRGLI 775

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Match: Rtf1 (gene:FBgn0034722 transcript:FBtr0342988)

HSP 1 Score: 180.644 bits (457), Expect = 1.164e-46
Identity = 125/394 (31.73%), Postives = 197/394 (50.00%), Query Frame = 2

Query: 1448 VETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIK---EENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            + T E L+K+RLSR+KME++V++P F+  V  CFVR++IG     +P+YR AEI  VVET KIY LGTTRTN GL+LK G     FRL F+SNQ+F  +EF+ W        + +P +  I  K   IK+  N+   DE  + K++  K RF+  P N+AM+K  L + +  A   GD D A+    +IDEL   A +L+++R+  +  ISYIN RNR+       +   LE     +  K+  DPF R  T+P + ++  K+   +             ++     +++  ++          D    ++ ++H+F++ LD+      N+ P  A   +ET                                   ++R LNL+DYK+++GLI
Sbjct:  428 ITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNN-GQKPVYRVAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQSHVQMPTIDLIAIKQNDIKKALNYEFKDED-VDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRK-KNVEDAEKAILEEARANKGLKI-SDPFTRRITQPRMGFKGAKKDEDDMQLAPLPPPPPGKKRPNEAGTSSASVRS--------TDSKDYSLYSLHDFDIDLDVPLPVNTNSVPKPASKPAET----------------------------------VSKRSLNLEDYKKKRGLI 775

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Match: SmB (gene:FBgn0262601 transcript:FBtr0304118)

HSP 1 Score: 92.8189 bits (229), Expect = 4.317e-21
Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXXXXXXXX-XXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTG-ATGIGQAVGRGMP 402
            K+ K+ QHL YR+R  LQD R  +GTFKAFDKHMN+IL DC+EFRK++SK S+  E+EEKR LGFVL+RGE +VSL V+GPPP E+      +PG     GIG+  GRGMP
Sbjct:    5 KNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMP 115

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Match: CG12498 (gene:FBgn0040356 transcript:FBtr0070489)

HSP 1 Score: 64.6994 bits (156), Expect = 7.276e-11
Identity = 40/127 (31.50%), Postives = 61/127 (48.03%), Query Frame = 2

Query: 1439 DKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEK 1819
            D  V + + L  +RLSRH++   +  P F+  V GCFVRVN+  G    P +R AE+  + E    Y +    TNV L+L+         +  VSN +F   EF+ WR   ++  +  P    +  K
Sbjct:   48 DLPVTSRDQLELLRLSRHRIGLLLVRPAFEQAVTGCFVRVNVS-GQGELPDHRIAEVLGICELDFGYKVEQIPTNVALRLRYDDLEMQHEINDVSNLNFTQEEFELWRDNCVNQAISPPTTHILTRK 173

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Match: tplus3a (gene:FBgn0051702 transcript:FBtr0085934)

HSP 1 Score: 65.0846 bits (157), Expect = 1.635e-10
Identity = 60/195 (30.77%), Postives = 91/195 (46.67%), Query Frame = 2

Query: 1448 VETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKG-PVNFAMRKAELT--RLKLGAENDGDDDQA-KKYQMEIDE 2020
            V  LE LS+  L R+ ++  +  P F + V G FVR+N+G+      +Y   E   + +  K Y +   RTN+ L L+ G      R+  VSNQ     EF  W    + +   LP L+ I +K  Q+K    +S   E  ++K++  K+  + G   N A RK  L   R      ND +  Q  +K  +EIDE
Sbjct:   99 VSNLEQLSRAVLKRNDIKNLLGKPIFAEAVIGSFVRINVGK------VYSIYETIALHQDSKDYRVDGKRTNLTLVLRCGSEKRYSRIDVVSNQPITQKEFLLWLETNLRNRCTLPTLNDIAKKQVQVKNACKYSYT-ETDVEKLIQDKK--EAGIKQNAAYRKISLIIERDMAAGMNDVEKVQVLEKKILEIDE 284

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Zebrafish
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778])

HSP 1 Score: 234.572 bits (597), Expect = 4.632e-65
Identity = 147/392 (37.50%), Postives = 209/392 (53.32%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL--NYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFD---PIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            + L++IRLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEI +VVET KIY LG+TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  ++  GM LP L  I +K Q IKE  N+  ND + ++ ++  K RF+K P N+AM+K +L + K  AE  GD D+AK  Q +++EL   AE L+R+RT  I  ISYINQRNR     ++ ++ +  + E +  +    DPF R   KP +  N R         A L            + +   N  + +      D   P  +   ++  +H+F+V +D++  N     AK +S +     +KD                            RR LNL+DYK+R+GLI
Sbjct:  343 DELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNS-SNKPVYRVAEIIDVVETAKIYQLGSTRTNKGLQLRHGNDTRVFRLEFVSNQEFTESEFMKWKEAMMIAGMQLPTLDEINKKEQSIKEAVNYKFND-KDIEDIVKEKDRFRKAPPNYAMKKTQLLKEKAMAEESGDGDKAKTLQDQLNELEERAEALDRQRTKNISAISYINQRNRSW---NIVESEKALVAEGQNSKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGAGQDNSQQANKQLGQASQKDKDVTKPTSDLSEDLFKVHDFDVKIDLQVPNAE---AKSLSVSSNALPVKDGA-------------------------PRRSLNLEDYKKRRGLI 701

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Zebrafish
Match: snrpb (small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819])

HSP 1 Score: 109.768 bits (273), Expect = 2.099e-26
Identity = 67/116 (57.76%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:448631])

HSP 1 Score: 231.106 bits (588), Expect = 1.222e-64
Identity = 122/252 (48.41%), Postives = 165/252 (65.48%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL 2215
            E L+K+RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE  GD D+AK+ Q E++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E++  ++   DPF R   KP +
Sbjct:  237 EELNKVRLSRHKLERWCHMPFFAKTVSGCFVRIGIGNHNS-KPVYRVAEITGVVETGKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEAMNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLMKDKAMAEEAGDQDRAKQIQDELNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESQSMKQQQMDPFTRRQCKPTM 483

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:448631])

HSP 1 Score: 231.876 bits (590), Expect = 2.019e-64
Identity = 150/390 (38.46%), Postives = 216/390 (55.38%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL--NYRX-XXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+K+RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE  GD D+AK+ Q E++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E++  ++   DPF R   KP +  N R    Q  +           A  +  + T S     K+  +     + E   ++  +H+F+V +D++  ++    +K ++ + K    KD                            RR LNL+DYK+R+GLI
Sbjct:  294 EELNKVRLSRHKLERWCHMPFFAKTVSGCFVRIGIGNHNS-KPVYRVAEITGVVETGKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEAMNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLMKDKAMAEEAGDQDRAKQIQDELNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESQSMKQQQMDPFTRRQCKPTMVSNSRDPAVQAAIIAQLNAKYGSGASNDASKDTGSAQSKDKDGNTKSASDLSE---DLFKVHDFDVKIDLQVPSSE---SKSLAISSKAPPAKDG-------------------------APRRSLNLEDYKKRRGLI 647

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:448631])

HSP 1 Score: 181.415 bits (459), Expect = 2.414e-47
Identity = 103/252 (40.87%), Postives = 146/252 (57.94%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL 2215
            E L+K+RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR +    V+                        +  FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE  GD D+AK+ Q E++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E++  ++   DPF R   KP +
Sbjct:  293 EELNKVRLSRHKLERWCHMPFFAKTVSGCFVRIGIGNHNS-KPVYRVSWAQPVL------------------------LRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEAMNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLMKDKAMAEEAGDQDRAKQIQDELNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESQSMKQQQMDPFTRRQCKPTM 515

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:448631])

HSP 1 Score: 151.369 bits (381), Expect = 1.592e-37
Identity = 92/252 (36.51%), Postives = 134/252 (53.17%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL 2215
            E L+K+RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR +    V+                             L ++            W   + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE  GD D+AK+ Q E++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E++  ++   DPF R   KP +
Sbjct:  293 EELNKVRLSRHKLERWCHMPFFAKTVSGCFVRIGIGNHNS-KPVYRVSWAQPVL-----------------------------LFYI------------WSLMMFSAGMQLPTLDEINKKELSIKEAMNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLMKDKAMAEEAGDQDRAKQIQDELNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESQSMKQQQMDPFTRRQCKPTM 498

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Match: snrpb (small nuclear ribonucleoprotein polypeptides B and B1 [Source:NCBI gene;Acc:407857])

HSP 1 Score: 103.605 bits (257), Expect = 4.159e-24
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
Match: Rtf1 (RTF1, Paf1/RNA polymerase II complex component [Source:MGI Symbol;Acc:MGI:1309480])

HSP 1 Score: 231.491 bits (589), Expect = 7.644e-64
Identity = 150/389 (38.56%), Postives = 215/389 (55.27%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKP--VLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E+        DPF R   KP  V N R    Q    A L A      +      +S      ++++ K     +   ++  +H+F+V +D++  ++    +K ++ T K    KD                            RR LNL+DYK+R+GLI
Sbjct:  362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS-KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESHNMRNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSK--TASDLSEDLFKVHDFDVKIDLQVPSSE---SKALAITSKAPPAKDGA-------------------------PRRSLNLEDYKKRRGLI 715

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
Match: Snrpb (small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342])

HSP 1 Score: 104.76 bits (260), Expect = 1.100e-24
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  GIG+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
Match: Snrpn (small nuclear ribonucleoprotein N [Source:MGI Symbol;Acc:MGI:98347])

HSP 1 Score: 103.605 bits (257), Expect = 4.130e-24
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116

[Close]

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
Match: Snrpb (small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342])

HSP 1 Score: 83.5741 bits (205), Expect = 3.080e-19
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEF 207
            M + KS+K+ QH++YRMR  LQDGR  +GTFKAFDKHMN+ILCDCDEF
Sbjct:    1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEF 48

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Match: sp|Q92541|RTF1_HUMAN (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4)

HSP 1 Score: 232.261 bits (591), Expect = 2.819e-63
Identity = 151/389 (38.82%), Postives = 218/389 (56.04%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL--NYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E+   +    DPF R   KP +  N R    Q    A L A      +      +S      ++++ K    D S+ ++  +H+F+V +D++  ++    +K ++ T K    KD                            RR LNL+DYK+R+GLI
Sbjct:  357 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS-KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSK-SASDLSE-DLFKVHDFDVKIDLQVPSSE---SKALAITSKAPPAKDGA-------------------------PRRSLNLEDYKKRRGLI 710

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Match: sp|A2AQ19|RTF1_MOUSE (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.347e-63
Identity = 150/389 (38.56%), Postives = 215/389 (55.27%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKP--VLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E+        DPF R   KP  V N R    Q    A L A      +      +S      ++++ K     +   ++  +H+F+V +D++  ++    +K ++ T K    KD                            RR LNL+DYK+R+GLI
Sbjct:  362 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS-KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESHNMRNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSK--TASDLSEDLFKVHDFDVKIDLQVPSSE---SKALAITSKAPPAKDGA-------------------------PRRSLNLEDYKKRRGLI 715

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Match: sp|Q5RAD5|RTF1_PONAB (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.281e-62
Identity = 120/252 (47.62%), Postives = 164/252 (65.08%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL 2215
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEIT VVET K+Y LG TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  + S GM LP L  I +K   IKE  N+  ND Q +++++  K+RF+K P N+AM+K +L + K  AE+ GD D+AK+ Q +++EL   AE L+R+RT  I  ISYINQRNRE    ++ ++ +  + E+   +    DPF R   KP +
Sbjct:  352 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNS-KPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFND-QDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREW---NIVESEKALVAESHNMKNQQMDPFTRRQCKPTI 598

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Match: sp|Q9W261|RTF1_DROME (RNA polymerase-associated protein Rtf1 OS=Drosophila melanogaster OX=7227 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.166e-45
Identity = 125/394 (31.73%), Postives = 197/394 (50.00%), Query Frame = 2

Query: 1448 VETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIK---EENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            + T E L+K+RLSR+KME++V++P F+  V  CFVR++IG     +P+YR AEI  VVET KIY LGTTRTN GL+LK G     FRL F+SNQ+F  +EF+ W        + +P +  I  K   IK+  N+   DE  + K++  K RF+  P N+AM+K  L + +  A   GD D A+    +IDEL   A +L+++R+  +  ISYIN RNR+       +   LE     +  K+  DPF R  T+P + ++  K+   +             ++     +++  ++          D    ++ ++H+F++ LD+      N+ P  A   +ET                                   ++R LNL+DYK+++GLI
Sbjct:  428 ITTREDLNKLRLSRYKMERFVNLPIFESTVLNCFVRISIGNN-GQKPVYRVAEIVGVVETGKIYSLGTTRTNRGLRLKHGTQERVFRLEFISNQEFTENEFNKWNEVCQQSHVQMPTIDLIAIKQNDIKKALNYEFKDED-VDKIVEEKNRFRNRPTNYAMKKTCLMKERDAAMLRGDYDIAQDLGQQIDELENRASELDKRRSHTLNLISYINDRNRK-KNVEDAEKAILEEARANKGLKI-SDPFTRRITQPRMGFKGAKKDEDDMQLAPLPPPPPGKKRPNEAGTSSASVRS--------TDSKDYSLYSLHDFDIDLDVPLPVNTNSVPKPASKPAET----------------------------------VSKRSLNLEDYKKKRGLI 775

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Match: sp|G5EBY0|RTF1_CAEEL (RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans OX=6239 GN=rtfo-1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 7.064e-34
Identity = 82/220 (37.27%), Postives = 127/220 (57.73%), Query Frame = 2

Query: 1442 KVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNR 2101
            K V+ L  L + RLSRHK+   +H PFF   V GC+VR+  G+       YR  +I  V E+ K+Y+L   +TN  +K + G S   FR+ FVSN DF+  EFD W       G  LP +  +++K Q I++  N   +D++ +  ++  K ++Q  P NFAM KA  ++ K  A+  GD  +A++ Q +IDE+   A++LE++R+  I  I++IN RNR
Sbjct:  250 KDVDGLSELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGSGSKYRIWKIVGVEESNKVYELEGKKTNKIIKCQNGGSERPFRMQFVSNADFEQIEFDEWLLACKRHGN-LPTVDIMDKKKQDIEKAINHKYSDKE-VDLMIKEKSKYQTVPRNFAMTKANWSKQKELAQQRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNR 467

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Match: G4VCZ0 (Plus3 domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_161170 PE=4 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.645e-77
Identity = 177/439 (40.32%), Postives = 251/439 (57.18%), Query Frame = 2

Query: 1436 EDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL-------NYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKI------------------------NINNIHNFEVHLDI-------------KEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E+++V ++EHLS+IRLSR KMEKWVHMPFF DL+KGCFVR+NIG    V PIYRCAEI +VVET KIYDLG TRTN G+ +++GK  +TFRL F+SN DFQ  EFDSW RR+    M  P L+F+ +KA +I E  N  I DE+ +++++ SK+RFQK P NFA+RKAEL + +  AE DGD +  K    EI+E+   AE++ER+RT G K+I+ INQRNR ++    E+AI  E EE    ++   DPF R  ++PV+       N R  K+  +   +  +     +     PT  + L +  + SL   P+  + I                        +++ IHNFE+++D+             +  +TNP +    S + ++    +S  + IN S           N      NRR+LNLQ+YK+R GLI
Sbjct:  291 EEELVSSVEHLSRIRLSRFKMEKWVHMPFFDDLIKGCFVRINIGLHQGV-PIYRCAEIVDVVETPKIYDLGDTRTNKGIVVRVGKDQSTFRLAFISNSDFQQDEFDSWMRRIHLANMKPPTLNFVRDKAAEITEAINRPIRDERVVEQIIQSKRRFQKAPTNFALRKAELIKQREQAETDGDTELLKHLDSEIEEIESQAERIERRRTLGFKSITSINQRNRALSVQQAEEAIRKESEEALNSKE--EDPFTRVHSQPVIVTKKYLENLR-HKRLGVVAQSNTSTCDLNQSLPPPPTPDSELSMSSKHSLLNTPMGSNSILTEAPDSVCWSLGDDNSNLSTPHDSLHAIHNFEINIDLDLDGNNDQANSNGRTGSTNPDVRH--STSPRSRGTANSTHDFINGS------PQTPMNGPFGKPNRRLLNLQEYKKRHGLI 717

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Match: A0A183MLK8 (Plus3 domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS16933 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.345e-77
Identity = 177/443 (39.95%), Postives = 250/443 (56.43%), Query Frame = 2

Query: 1436 EDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXX-----PTVSNNLPIKEEVSLKFDPIDESKI------------------------NINNIHNFEVHLDI-------------KEENTNPHIAKVIS-----ETDKTFDLKD-SILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E+++V ++EHLS+IRLSR KMEKWVHMPFF +L+KGCFVR+NIG    V PIYRCAEI +VVET KIYDLG TRTN G+ +++GK  +TFRL F+SN DFQ  EFDSW RR+    M  P L+F+ +KA +I E  N  I DE+ +++++ SK+RFQK P NFA+RKAEL + +  AE DGD +  K    EI+E+   AE++ER+RT G K+I+ INQRNR ++    E+AI  E EE    ++   DPF R  ++PV+  +K  + L  K      +     +  +     PT  + L +  + SL   P+  + I                        +++ IHNFE+++D+             +  +TNP +    S      T+ T D  + S    +N   G                NRR+LNLQ+YK+R GLI
Sbjct:  290 EEELVSSVEHLSRIRLSRFKMEKWVHMPFFDNLIKGCFVRINIGLHQGV-PIYRCAEIVDVVETPKIYDLGDTRTNKGIVVRVGKDQSTFRLAFISNSDFQQDEFDSWMRRIHLANMKPPTLNFVRDKAAEITEAINRPIRDERVVEQIIQSKRRFQKAPTNFALRKAELIKQREQAETDGDTELLKHLDSEIEEIESQAERIERRRTLGFKSITSINQRNRALSVQQAEEAIRKESEEALNSKEE--DPFTRVHSQPVIVTKKYLENLRHKRLGVVAQSNTSCDLNQSFPPPPTPDSELSMSSKHSLLNTPMGSNSIITEAPDSVCWSLGDDNSNLSTPHDSLHAIHNFEINIDLDLDGNNDQANSNGRTGSTNPDVRHSTSPRSRGTTNSTHDFTNGSPQTPMNGPFG--------------KPNRRLLNLQEYKKRHGLI 715

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Match: A0A095AYM8 (RNA polymerase-associated protein RTF1-like protein OS=Schistosoma haematobium OX=6185 GN=MS3_08272 PE=4 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.040e-75
Identity = 175/443 (39.50%), Postives = 249/443 (56.21%), Query Frame = 2

Query: 1436 EDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXX-----PTVSNNLPIKEEVSLKFDPIDESKI------------------------NINNIHNFEVHLDI------KEENTNPHIAKVISE------------TDKTFDLKD-SILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E+++V ++EHLS+IRLSR KMEKWVHMPFF +L+KGCFVR+NIG    V PIYRCAEI +VVET KIYDLG TRTN G+ +++GK  +TFRL F+SN DFQ  EFDSW RR+    M  P L+F+ +KA +I E  N  I DE+ +++++ SK+RFQK P NFA+RKAEL + +  AE DGD +  K    EI+E+   AE++ER+RT G K+I+ INQRNR ++    E+AI  E EE    ++   DPF R  ++PV+  +K  + L  K      +     +  +     PT  + L +  + SL   P+  + I                        +++ IHNFE+++D+       + N+N       ++            T+ T D  + S    +N   G                NRR+LNLQ+YK+R GLI
Sbjct:  290 EEELVSSVEHLSRIRLSRFKMEKWVHMPFFDNLIKGCFVRINIGLHQGV-PIYRCAEIVDVVETPKIYDLGDTRTNKGIVVRVGKDQSTFRLAFISNSDFQQDEFDSWMRRIHLANMKPPTLNFVRDKAAEITEAINRPIRDERVVEQIIQSKRRFQKAPTNFALRKAELIKQREQAETDGDTELLKHLDSEIEEIESQAERIERRRTLGFKSITSINQRNRALSVQQAEEAIRKESEEALNSKEE--DPFTRVHSQPVIVTKKYLENLRHKRLGVVAQSNTSCDLNQSFPPPPTPDSELSMSSKHSLLNTPMGSNSIITEAPDSVCWSLGDDNSNLSTPHDSLHAIHNFEINIDLDLDGNNDQANSNGRTGSTNTDVRHSTSPRSRGTTNSTHDFTNGSPQTPMNGPFG--------------KPNRRLLNLQEYKKRHGLI 715

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Match: A0A0X3PUE6 (Plus3 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR125286 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.239e-75
Identity = 169/413 (40.92%), Postives = 245/413 (59.32%), Query Frame = 2

Query: 1439 DKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL----------NYRXXXXXXXXXXXXXXXXXXXXXXXXXPT--VSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLD--IKEENTNPHIAKVISETD-----KTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            +++V TL+ LSKIRLSR++ E+WVHMPFF +LVKGCF R+NIG    V P+YRC EI +VVET K YDLG TRTN G+ L++GK   TFRL+FVSN +F  +EF+SW R     G+  P L+++ +K  +I++  N  I+DE+  ++++ SK+RFQK P NFA+RKAEL + +  AE +GD +  ++  +E+DEL   AEK+ERKRT G K+I+ INQRNRE++    E+AI  E +E     +   DPF R  +KPV+          N R  K    E+   +A E+++  +   P   ++ N P    V     P +ES   ++ IH+FE+ +D  IK  + + H+ + +S            ++ S   A N + G                NRR LNLQ+YKRR+GLI
Sbjct:  285 EELVSTLDQLSKIRLSRYRFERWVHMPFFDELVKGCFARINIGLSQGV-PVYRCGEIVDVVETAKTYDLGNTRTNKGIVLRVGKDQHTFRLVFVSNSEFLPAEFESWLRHTNEAGLRPPTLAYVAKKHDEIQKAINTIISDERVFEQIIQSKRRFQKAPTNFALRKAELLKQREVAEGEGDTEAVRRLNLELDELETQAEKIERKRTIGFKSITSINQRNRELSVKQAEEAIIKEAQEAALSREE--DPFTRIQSKPVIVTKSYLEKLRNKRNAKGDADEEKKEDAEEQKSAEKSEAPGSDLNQNSPCAWNVGA---PPEES---LHAIHDFEIDIDVNIKPAHEDVHVTENLSGGGVCVQKPNMAMQRSASAAANLNGG-------------GEPNRRFLNLQEYKRRRGLI 675

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Match: A0A183NRW0 (Plus3 domain-containing protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS4846 PE=4 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.037e-75
Identity = 174/443 (39.28%), Postives = 247/443 (55.76%), Query Frame = 2

Query: 1436 EDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXX-----PTVSNNLPIKEEVSLKFDPIDESKI------------------------NINNIHNFEVHLDIKEENTNPHI------------------AKVISETDKTFDLKD-SILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E+++V ++EHLS+IRLSR KMEKWVHMPFF +L+KGCFVR+NIG    V PIYRCAEI +VVET KIYDLG TRTN G+ +++GK  +TFRL F+SN DFQ  EFDSW RR+    M  P L+F+ +KA +I E  N  I DE+ +++++ SK+RFQK P NFA+RKAEL + +  AE DGD +  K    EI+E+   AE++ER+RT G K+I+ INQRNR ++    E+AI  E EE    ++   DPF R  ++PV+  +K  + L  K      +     +  +     PT  + L +  + SL   P+  + I                        +++ IHNFE+++D+  +  N  +                   +    T+ T D  + S    +N   G                NRR+LNLQ+YK+R GLI
Sbjct:  336 EEELVSSVEHLSRIRLSRFKMEKWVHMPFFDNLIKGCFVRINIGLHQGV-PIYRCAEIVDVVETPKIYDLGDTRTNKGIVVRVGKDQSTFRLAFISNSDFQQDEFDSWMRRIHLANMKPPTLNFVRDKAAEITEAINRPIRDERVVEQIIQSKRRFQKAPTNFALRKAELIKQREQAETDGDTELLKHLDSEIEEIESQAERIERRRTLGFKSITSINQRNRALSVQQAEEAIRKESEEALNSKE--EDPFTRVHSQPVIVTKKYLENLRHKRLGVVAQSNTSCDLNQSFPPPPTPDSELSMSSKHSLLNTPMGSNSIITEAPDSVCWSLGDDNSNLSTPHDSLHAIHNFEINIDLDLDGNNDQVNSNGRTGSTNTDVRHSTSPRSRGTTNSTHDFTNGSPQTPMNGPFG--------------KPNRRLLNLQEYKKRHGLI 761

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Cavefish
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778])

HSP 1 Score: 218.779 bits (556), Expect = 8.313e-60
Identity = 145/394 (36.80%), Postives = 210/394 (53.30%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYR-CAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL--NYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSN----NLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L+++RLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR  AEI +VVET K+Y LGTTRTN GL+L  G     FRL FVSNQ+F  +EF  W+  +I  GM +P L  I +K Q IKE  N+  ND + ++ ++  K RF+K P N+AM+K +L + K  AE++GD D+ K  Q +++EL   AE L+R+RT  I  I YINQRNR     ++ ++ +  + E +  +    DPF R   KP +  N R         A L                 N    + P  ++ S    P  +   ++  +H+F+V +D++     P+ AK +S +  +  +KD                            RR LNL+DYK+R+GLI
Sbjct:  331 EELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNCSS-KPVYRQVAEIVDVVETAKVYQLGTTRTNKGLQLH-GNDTRVFRLEFVSNQEFTENEFMKWKDAMILAGMQIPTLDEITKKEQSIKEALNYKFND-KDIEDIVKEKDRFRKAPPNYAMKKTQLLKEKAMAEDNGDGDKVKLLQDQLNELEERAEALDRQRTKSISAI-YINQRNRSW---NIVESEKALVAEGQNSKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGGADNSQQGNKQGQSNPKDKDAS---KPTSDLSEDLFKVHDFDVKIDLQV----PNAAKSLSVSSNSLPVKDGA-------------------------PRRSLNLEDYKKRRGLI 685

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Cavefish
Match: snrpb (small nuclear ribonucleoprotein polypeptides B and B1 [Source:NCBI gene;Acc:103031946])

HSP 1 Score: 108.227 bits (269), Expect = 7.363e-26
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH+++RMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Cavefish
Match: snrpb (small nuclear ribonucleoprotein polypeptides B and B1 [Source:NCBI gene;Acc:103031946])

HSP 1 Score: 108.227 bits (269), Expect = 7.540e-26
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            M + KS+K+ QH+++RMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Sea Lamprey
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778])

HSP 1 Score: 173.326 bits (438), Expect = 3.408e-45
Identity = 101/267 (37.83%), Postives = 151/267 (56.55%), Query Frame = 2

Query: 1445 VVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELT-------RLKLGAEND---GDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVL 2215
            +V + + L++IRLSRHKME+W HMPFF+    GCFVR+ IG   + +P+YR AE+T ++ET KIY LGTTRTN GL+L+ G     FRL FVSNQD   +EF  W+  ++  G+ LP L  I +K Q IK   ++  ND Q ++ ++  K +F+K P N+AM+K EL        +L  G + +   G  +  ++  +E+  +N             I  ++YINQRNRE    ++ ++ +    E    +    DPF R   KP +
Sbjct:  326 LVSSKDELNQIRLSRHKMERWCHMPFFERTAIGCFVRIGIGNN-NAKPVYRVAEVTGMMETGKIYQLGTTRTNKGLRLRHGNQERVFRLEFVSNQDITDNEFQKWKEAMMLGGLQLPTLDEINKKHQDIKVAHDYKFND-QDVEHIVQEKDKFRKNPANYAMKKTELMKEKGLRPKLPSGPKANSITGIYNIVQQRTVEVAAVNGLV----------ISLVTYINQRNREW---NIVESEKAMQAEVVNMKNQKMDPFTRRQCKPTM 577

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Sea Lamprey
Match: snrpb (small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819])

HSP 1 Score: 105.145 bits (261), Expect = 2.430e-27
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTE 327
            M + +S+K+ QH++YRMR TLQDGR  +GTFKAFDKHMN+ILCDCDEFRK++       E+EEKR LG VL+RGE LVS+ V+GPPP +
Sbjct:    1 MTVGRSSKMLQHIDYRMRCTLQDGRIFIGTFKAFDKHMNLILCDCDEFRKIRPKNSKAGEREEKRVLGLVLLRGESLVSMTVEGPPPKD 89

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Yeast
Match: RTF1 (Subunit of RNAPII-associated chromatin remodeling Paf1 complex; regulates gene expression by directing cotranscriptional histone modification, influences transcription and chromatin structure through several independent functional domains; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay [Source:SGD;Acc:S000003213])

HSP 1 Score: 69.3218 bits (168), Expect = 1.694e-12
Identity = 59/225 (26.22%), Postives = 109/225 (48.44%), Query Frame = 2

Query: 1466 LSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIG-EGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQK--GPVNFAMRKAEL-TRLKLGAENDGDDDQAK-KYQMEIDELNMTA-EKLERKRTTGIKNISYINQRNREITQTHV 2122
             +K+R+ R  + K+   P F+D VKGC+ RVN+G +  + +  YR   I E V   K Y++G   TN    +  GK    F++ + S+  F   E+  + R + +  M  P L  +  K +++ ++ N  + D +T  +V+  + +F K     N  + K  L  +L+   E + + D AK   Q+   E  M+  EK      + IK +  +  +NR++  +++
Sbjct:  244 FNKLRIGRSFVAKFCFYPGFEDAVKGCYGRVNVGTDKRTGKTSYRMVRI-ERVFLQKPYNMGKFYTNQYFGVTQGKDRKVFQMNYFSDGLFAEDEYQRYLRALDNSQMIKPSLHSLSNKTKEVMDFVNTPLTD-KTTDEVVRHRMQFNKKLSGTNAVLEKTVLREKLQYAKETNNEKDIAKYSAQLRNFEKRMSVYEKHHENDQSDIKKLGELTSKNRKLNMSNI 466

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Yeast
Match: SMB1 (Core Sm protein Sm B; part of heteroheptameric complex (with Smd1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm B and Sm B' [Source:SGD;Acc:S000000831])

HSP 1 Score: 51.2174 bits (121), Expect = 1.456e-7
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1

Query:   79 SAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDE-------------FXXXXXXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPP 318
            S+++   ++Y++R   QDGR  +G   AFDKHMN++L +C E              +  K   +   K EKR LG  ++RGEQ++S  V+  P
Sbjct:    9 SSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Nematostella
Match: EDO44107 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWY6])

HSP 1 Score: 210.69 bits (535), Expect = 1.051e-58
Identity = 102/212 (48.11%), Postives = 144/212 (67.92%), Query Frame = 2

Query: 1466 LSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNR 2101
            L +IRLSRHKME+WVHMPFF   + GCFVR+ IG     +P+YR AEI +VVET K+Y LG T+TN GLKL+ G     FRL FVSNQ    +EF  W+    + G+PLP L  +E+K + I+E  N + N+E  ++K++  KQ+F+K P N+A++K EL R K  AE  G+ ++A+K + E+D L   A+ L+++R+ G+  ISYIN+RNR
Sbjct:  185 LERIRLSRHKMERWVHMPFFAKTLAGCFVRIGIGNHDG-RPVYRVAEIKDVVETAKVYSLGATKTNKGLKLRHGPQERVFRLEFVSNQRISETEFQRWKEECEAHGIPLPTLDDVEKKVKDIEEAKNHAYNEED-IEKIVSEKQKFRKTPFNYAIKKNELIRRKEIAETSGNHEEAEKIRSELDNLEERAQVLDKQRSRGLSAISYINERNR 394

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Nematostella
Match: EDO30202 (Small nuclear ribonucleoprotein-associated protein [Source:UniProtKB/TrEMBL;Acc:A7T1G2])

HSP 1 Score: 113.235 bits (282), Expect = 5.102e-28
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 1

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTGATGIGQAVGRGMPA 405
            KS+K+  H+ YRMR TLQDGR  +GTF AFDKHMNVIL DCDEFRK+K      +E+EEKR LG VL+RGE LVS+ VDGPP  +D +K+        TG+G+A GRG+PA
Sbjct:    6 KSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQEREEKRVLGLVLLRGEHLVSMTVDGPPVADDKSKSLGANAVPGTGMGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:101163125])

HSP 1 Score: 239.58 bits (610), Expect = 2.245e-68
Identity = 143/387 (36.95%), Postives = 212/387 (54.78%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L++IRLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEI +VVET K+Y LG+TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  +I  GM +P L  I +K Q IKE  N+  ND + ++ ++  K RF++ P N+AM+K +L + K  AE +GD ++ K  Q E++EL   AE L+R+RT  I  ISYINQRNR     ++ ++ +  + E +  +    DPF R   KP +    +   +         +K       +P+   ++  +   +  FDP  +   ++  +H+F+V +D++  N     AK +S +     +KD                            RR LNL+DYK+R+GLI
Sbjct:  183 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSS-KPVYRVAEIVDVVETAKVYQLGSTRTNKGLQLRHGADTRVFRLEFVSNQEFTESEFMKWKEAMIIAGMQVPTLDEITKKEQSIKEAVNYKFND-KDIEDIVKEKDRFRRAPPNYAMKKTQLLKDKAMAEENGDGEKVKVIQDELNELEERAEALDRQRTKNISAISYINQRNR---SWNIVESEKALVAEGQNAKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGPDPSKHGSINFRR--TKDFDPTTDLSEDLFKVHDFDVKIDLQVPNAE---AKSLSVSSNALPVKDGA-------------------------PRRSLNLEDYKKRRGLI 534

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:101163125])

HSP 1 Score: 233.032 bits (593), Expect = 7.819e-65
Identity = 143/391 (36.57%), Postives = 213/391 (54.48%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININN----IHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L++IRLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEI +VVET K+Y LG+TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  +I  GM +P L  I +K Q IKE  N+  ND + ++ ++  K RF++ P N+AM+K +L + K  AE +GD ++ K  Q E++EL   AE L+R+RT  I  ISYINQRNR     ++ ++ +  + E +  +    DPF R   KP +    +   +         +K       +P+ S     +++ S K   + +   +++     +H+F+V +D++  N     AK +S +     +KD                            RR LNL+DYK+R+GLI
Sbjct:  317 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSS-KPVYRVAEIVDVVETAKVYQLGSTRTNKGLQLRHGADTRVFRLEFVSNQEFTESEFMKWKEAMIIAGMQVPTLDEITKKEQSIKEAVNYKFND-KDIEDIVKEKDRFRRAPPNYAMKKTQLLKDKAMAEENGDGEKVKVIQDELNELEERAEALDRQRTKNISAISYINQRNR---SWNIVESEKALVAEGQNAKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGPDPS-STEKNTQDQASPKDKDVPKPTTDLSEDLFKVHDFDVKIDLQVPNAE---AKSLSVSSNALPVKDGA-------------------------PRRSLNLEDYKKRRGLI 673

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Match: rtf1 (RTF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene;Acc:101163125])

HSP 1 Score: 233.032 bits (593), Expect = 8.529e-65
Identity = 143/391 (36.57%), Postives = 213/391 (54.48%), Query Frame = 2

Query: 1460 EHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININN----IHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            E L++IRLSRHK+E+W HMPFF   V GCFVR+ IG   S +P+YR AEI +VVET K+Y LG+TRTN GL+L+ G     FRL FVSNQ+F  SEF  W+  +I  GM +P L  I +K Q IKE  N+  ND + ++ ++  K RF++ P N+AM+K +L + K  AE +GD ++ K  Q E++EL   AE L+R+RT  I  ISYINQRNR     ++ ++ +  + E +  +    DPF R   KP +    +   +         +K       +P+ S     +++ S K   + +   +++     +H+F+V +D++  N     AK +S +     +KD                            RR LNL+DYK+R+GLI
Sbjct:  317 EELNRIRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNSSS-KPVYRVAEIVDVVETAKVYQLGSTRTNKGLQLRHGADTRVFRLEFVSNQEFTESEFMKWKEAMIIAGMQVPTLDEITKKEQSIKEAVNYKFND-KDIEDIVKEKDRFRRAPPNYAMKKTQLLKDKAMAEENGDGEKVKVIQDELNELEERAEALDRQRTKNISAISYINQRNRSW---NIVESEKALVAEGQNAKNQQMDPFTRRQCKPTMVSNARDPSVHAAILAHLNQKYGSGSGPDPS-STEKNTQDQASPKDKDVPKPTTDLSEDLFKVHDFDVKIDLQVPNAE---AKSLSVSSNALPVKDGA-------------------------PRRSLNLEDYKKRRGLI 673

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Match: SNRPN (small nuclear ribonucleoprotein-associated protein B' [Source:NCBI gene;Acc:101173217])

HSP 1 Score: 107.457 bits (267), Expect = 1.363e-25
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 1

Query:   76 KSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXX-XXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            KS+K+ QH+++RMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK+K     + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    5 KSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Match: SNRPN (small nuclear ribonucleoprotein-associated protein B' [Source:NCBI gene;Acc:101173217])

HSP 1 Score: 103.605 bits (257), Expect = 4.567e-24
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1

Query:   82 AKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXX-XXXXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPA 405
            +K+ QH+++RMR  LQDGR  +GTFKAFDKHMN+ILCDCDEFRK       + E+EEKR LG VL+RGE LVS+ V+GPPP +    + P+    G  G+G+A GRG+PA
Sbjct:    4 SKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 113

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Planmine SMEST
Match: SMESG000029424.1 (SMESG000029424.1)

HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 623/623 (100.00%), Postives = 623/623 (100.00%), Query Frame = 2

Query:  752 MANDKSNDWCSSEEDDFKPILKKCKXXXXXXXXXXXXXXXXXXPLEKLFKDEDERNRVMRLTEKDREEEIFKRSVELLNIKSRQKAFKKLNEQKKKQSNQRPMNKKRSLAEVFSRCTXXXXXXXXXXXXXXXXXXLPKKKSKASPQPFGRQKALDNQKRSQNVMLSQLNEIRKQRXXXXXXXXXXXXXXPQLDSDSSDLEEKNIDNVDRQXXXXXXXXEQIGETEDQDEDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVXXXXXXXXXXXXXXXKVGGDPFLREPTKPVLNYRXXXXXXXXXXXXXXXXXXXXXXXXXPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGXXXXXXXXXXXXXXXXXRRVLNLQDYKRRKGLI 2620
            MANDKSNDWCSSEEDDFKPILKKCKVESDVEEGELSSDDGDEVPLEKLFKDEDERNRVMRLTEKDREEEIFKRSVELLNIKSRQKAFKKLNEQKKKQSNQRPMNKKRSLAEVFSRCTSGDESVHSSSNESSKDNSLPKKKSKASPQPFGRQKALDNQKRSQNVMLSQLNEIRKQRKEKAEKTKEENTKKPQLDSDSSDLEEKNIDNVDRQSIISSSSSEQIGETEDQDEDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVEKAIELEIEENREWEKVGGDPFLREPTKPVLNYRKKKQQLLEKAALEALEKEAKVEKVEPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGNISATTASANSSQSSTNRRVLNLQDYKRRKGLI
Sbjct:    1 MANDKSNDWCSSEEDDFKPILKKCKVESDVEEGELSSDDGDEVPLEKLFKDEDERNRVMRLTEKDREEEIFKRSVELLNIKSRQKAFKKLNEQKKKQSNQRPMNKKRSLAEVFSRCTSGDESVHSSSNESSKDNSLPKKKSKASPQPFGRQKALDNQKRSQNVMLSQLNEIRKQRKEKAEKTKEENTKKPQLDSDSSDLEEKNIDNVDRQSIISSSSSEQIGETEDQDEDKVVETLEHLSKIRLSRHKMEKWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGTTRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKLSFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTRLKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNREITQTHVEKAIELEIEENREWEKVGGDPFLREPTKPVLNYRKKKQQLLEKAALEALEKEAKVEKVEPTVSNNLPIKEEVSLKFDPIDESKININNIHNFEVHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGNISATTASANSSQSSTNRRVLNLQDYKRRKGLI 623

[Close]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Planmine SMEST
Match: SMESG000029426.1 (SMESG000029426.1)

HSP 1 Score: 220.705 bits (561), Expect = 3.918e-66
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1

Query:   64 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFXXXXXXXXXXXXXXXXXLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTGATGIGQAVGRGMPAFXXXXXXXXXXXXXXXXXXXXXXSMMQPRPMLAXXXXXXXXXXXXXXXXXXXXXXXRGFPPFANQ 600
            MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFRKVKSKGSREEKEEKRSLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTGATGIGQAVGRGMPAFTTVAAPPPGLTGPPTWGAGPPGSMMQPRPMLAGMPPGVPGIPPPPFGAPPLPQGGRGFPPFANQ
Sbjct:    1 MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFRKVKSKGSREEKEEKRSLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTGATGIGQAVGRGMPAFTTVAAPPPGLTGPPTWGAGPPGSMMQPRPMLAGMPPGVPGIPPPPFGAPPLPQGGRGFPPFANQ 179

The following BLAST results are available for this feature:

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Celegans
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Zebrafish
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Cavefish
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Sea Lamprey
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Yeast
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Nematostella
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
BLAST of RNA polymerase-associated protein RTF1-like protein vs. Planmine SMEST

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RTF1	5.870e-64	38.82	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
RTF1	1.792e-36	49.01	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
SNRPN	8.645e-25	57.76	small nuclear ribonucleoprotein polypeptide N [Sou...	[more]
SNRPB	1.603e-24	58.62	small nuclear ribonucleoprotein polypeptides B and...	[more]
SNRPB	2.083e-24	58.62	small nuclear ribonucleoprotein polypeptides B and...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rtfo-1	5.553e-35	37.27	RNA polymerase-associated protein RTF1 homolog [S...	[more]
snr-2	4.117e-21	53.26	Probable small nuclear ribonucleoprotein-associate...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rtf1	1.164e-46	31.73	gene:FBgn0034722 transcript:FBtr0071820	[more]
Rtf1	1.164e-46	31.73	gene:FBgn0034722 transcript:FBtr0342988	[more]
SmB	4.317e-21	59.46	gene:FBgn0262601 transcript:FBtr0304118	[more]
CG12498	7.276e-11	31.50	gene:FBgn0040356 transcript:FBtr0070489	[more]
tplus3a	1.635e-10	30.77	gene:FBgn0051702 transcript:FBtr0085934	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rtf1	4.632e-65	37.50	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
snrpb	2.099e-26	57.76	small nuclear ribonucleoprotein polypeptides B and...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rtf1	1.222e-64	48.41	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
rtf1	2.019e-64	38.46	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
rtf1	2.414e-47	40.87	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
rtf1	1.592e-37	36.51	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
snrpb	4.159e-24	58.93	small nuclear ribonucleoprotein polypeptides B and...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rtf1	7.644e-64	38.56	RTF1, Paf1/RNA polymerase II complex component [So...	[more]
Snrpb	1.100e-24	58.62	small nuclear ribonucleoprotein B [Source:MGI Symb...	[more]
Snrpn	4.130e-24	58.93	small nuclear ribonucleoprotein N [Source:MGI Symb...	[more]
Snrpn	4.130e-24	58.93	small nuclear ribonucleoprotein N [Source:MGI Symb...	[more]
Snrpb	3.080e-19	70.83	small nuclear ribonucleoprotein B [Source:MGI Symb...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q92541\|RTF1_HUMAN	2.819e-63	38.82	RNA polymerase-associated protein RTF1 homolog OS=...	[more]
sp\|A2AQ19\|RTF1_MOUSE	5.347e-63	38.56	RNA polymerase-associated protein RTF1 homolog OS=...	[more]
sp\|Q5RAD5\|RTF1_PONAB	4.281e-62	47.62	RNA polymerase-associated protein RTF1 homolog (Fr...	[more]
sp\|Q9W261\|RTF1_DROME	1.166e-45	31.73	RNA polymerase-associated protein Rtf1 OS=Drosophi...	[more]
sp\|G5EBY0\|RTF1_CAEEL	7.064e-34	37.27	RNA polymerase-associated protein RTF1 homolog OS=...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
G4VCZ0	2.645e-77	40.32	Plus3 domain-containing protein OS=Schistosoma man...	[more]
A0A183MLK8	6.345e-77	39.95	Plus3 domain-containing protein OS=Schistosoma mar...	[more]
A0A095AYM8	1.040e-75	39.50	RNA polymerase-associated protein RTF1-like protei...	[more]
A0A0X3PUE6	2.239e-75	40.92	Plus3 domain-containing protein OS=Schistocephalus...	[more]
A0A183NRW0	5.037e-75	39.28	Plus3 domain-containing protein OS=Schistosoma mat...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rtf1	8.313e-60	36.80	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
snrpb	7.363e-26	56.90	small nuclear ribonucleoprotein polypeptides B and...	[more]
snrpb	7.540e-26	56.90	small nuclear ribonucleoprotein polypeptides B and...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rtf1	3.408e-45	37.83	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
snrpb	2.430e-27	62.92	small nuclear ribonucleoprotein polypeptides B and...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RTF1	1.694e-12	26.22	Subunit of RNAPII-associated chromatin remodeling ...	[more]
SMB1	1.456e-7	34.41	Core Sm protein Sm B; part of heteroheptameric com...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO44107	1.051e-58	48.11	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30202	5.102e-28	59.46	Small nuclear ribonucleoprotein-associated protein...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rtf1	2.245e-68	36.95	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
rtf1	7.819e-65	36.57	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
rtf1	8.529e-65	36.57	RTF1 homolog, Paf1/RNA polymerase II complex compo...	[more]
SNRPN	1.363e-25	58.04	small nuclear ribonucleoprotein-associated protein...	[more]
SNRPN	4.567e-24	56.36	small nuclear ribonucleoprotein-associated protein...	[more]

BLAST of RNA polymerase-associated protein RTF1-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000029424.1	0.000e+0	100.00	SMESG000029424.1	[more]
SMESG000029426.1	3.918e-66	100.00	SMESG000029426.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30022937 ID=SMED30022937|Name=RNA polymerase-associated protein RTF1-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3119bp
ATTTAATATATGACTGTTTGTTTAAATTTGATTAAACTTTGAATCGAATA
GTAATTTTTAGATATGCCGATGCCAAAAAGTGCAAAAATTACTCAACATC
TTGAGTATAGAATGAGAGCAACACTTCAAGATGGTCGTCAACTTGTTGGA
ACTTTTAAAGCCTTTGATAAGCACATGAATGTTATTTTATGTGATTGTGA
TGAATTTCGTAAAGTTAAAAGCAAAGGTTCGAGAGAAGAGAAAGAAGAAA
AACGGTCATTGGGATTTGTGTTAATCCGAGGTGAACAATTGGTCAGTCTA
AATGTTGATGGTCCTCCTCCAACTGAAGATAGTACTAAAACTCCAGTTTT
GCCAGGTACTGGTGCAACCGGTATTGGTCAAGCCGTTGGACGTGGAATGC
CAGCATTTACAACAGTTGCAGCTCCTCCGCCTGGGTTAACTGGTCCTCCT
ACCTGGGGTGCTGGACCTCCTGGTAGTATGATGCAACCTCGTCCAATGTT
AGCAGGTATGCCACCTGGAGTTCCAGGTATTCCGCCACCACCATTTGGAG
CTCCTCCTTTGCCACAAGGAGGAAGAGGATTTCCACCTTTTGCTAATCAA
TAAATATTAAAGATTTCATTGTGAATATAACTTTGTGTTTCTGTTTAAGA
ATTTCTGATTAGTTTTAATTTATAGTTAATTTTCAGTAATTTTTAAAATA
TTTGTTTAAATACGCTACATTTGAGCGCTATTTTTATCTTGTAATTAGTA
AATGGCGAATGATAAAAGTAATGATTGGTGTTCTTCTGAAGAAGATGACT
TTAAACCTATTTTAAAGAAATGTAAAGTTGAATCTGATGTCGAAGAAGGC
GAATTATCTAGTGATGATGGCGATGAGGTACCACTTGAAAAGCTTTTCAA
AGATGAAGATGAACGAAATAGAGTTATGCGTTTAACTGAAAAAGATCGAG
AAGAAGAAATTTTTAAACGATCGGTTGAGTTACTTAATATCAAAAGCAGG
CAAAAAGCTTTTAAAAAATTAAATGAACAGAAAAAGAAACAATCTAACCA
GCGACCTATGAATAAAAAGCGCTCACTCGCTGAGGTTTTTAGTAGATGTA
CTAGTGGGGATGAATCCGTTCATAGTTCTTCTAATGAATCATCTAAAGAC
AATTCATTACCTAAAAAGAAATCAAAAGCATCTCCTCAGCCGTTTGGTCG
CCAGAAAGCTCTCGATAATCAAAAACGCTCACAAAATGTTATGCTTTCAC
AGTTAAACGAAATTCGTAAACAAAGAAAAGAAAAGGCAGAAAAAACTAAG
GAAGAAAATACAAAAAAGCCACAATTAGATTCAGACTCAAGTGACTTAGA
AGAAAAAAATATTGACAATGTCGACCGTCAATCCATAATATCAAGTTCCA
GCTCAGAACAAATTGGTGAAACAGAAGATCAAGATGAAGATAAAGTAGTT
GAAACACTCGAACATTTATCTAAAATTAGATTGTCGAGGCATAAAATGGA
GAAATGGGTTCACATGCCATTTTTTAAAGATCTTGTCAAAGGATGTTTTG
TTCGAGTAAATATTGGTGAAGGTCCATCAGTTCAGCCGATTTATCGTTGC
GCCGAAATAACCGAAGTGGTTGAAACGGTGAAAATTTACGATCTCGGTAC
AACGAGAACGAATGTCGGATTGAAATTAAAAATCGGGAAATCCGTAACAA
CTTTCCGATTGATATTCGTATCAAATCAAGACTTCCAATCGTCAGAATTC
GATAGTTGGCGACGTCGAGTAATCAGCGATGGAATGCCATTGCCAAAACT
CAGTTTCATCGAAGAAAAAGCTCAACAAATCAAAGAATATTCGAATTTTT
CAATAAACGACGAGCAGACTATGCAAAAGGTCCTCATGTCAAAGCAGAGA
TTTCAAAAAGGCCCGGTAAATTTCGCAATGAGAAAAGCCGAATTAACCCG
ACTGAAATTGGGGGCTGAAAACGACGGTGACGATGACCAGGCGAAAAAGT
ATCAAATGGAAATCGACGAATTAAATATGACTGCAGAAAAGCTGGAACGG
AAACGAACAACCGGAATCAAGAATATCAGCTACATCAATCAGAGAAATCG
AGAAATCACTCAAACACATGTCGAAAAGGCAATCGAATTGGAAATCGAAG
AGAATCGAGAATGGGAGAAAGTCGGAGGTGATCCGTTTTTGCGAGAACCG
ACGAAACCGGTTTTGAATTATCGGAAAAAGAAACAACAATTGCTGGAGAA
AGCAGCTCTGGAAGCCCTGGAGAAAGAAGCGAAAGTCGAGAAGGTCGAAC
CGACAGTTAGCAACAATCTCCCGATCAAAGAAGAAGTCTCGTTGAAATTT
GATCCGATCGACGAGTCCAAGATAAATATCAATAATATCCACAATTTCGA
GGTTCACCTTGATATCAAAGAAGAAAACACAAATCCTCACATTGCTAAAG
TGATCTCAGAAACCGACAAAACATTCGATCTGAAAGATTCGATTTTGAAC
GCGATCAATAACAGTTTAGGGAACATCAGCGCGACAACTGCTTCCGCAAA
CTCCTCTCAGAGCTCAACCAATCGGCGCGTTCTGAATTTGCAGGATTATA
AACGCAGGAAAGGCCTTATTTAAGGCTGGGAATAGCGACGGAACAGATCG
AGATTTTGCGTGTGTGTGTGTGCAATTGGCCGATTGATTGCGAGCTGATT
ATAATTATTATTAAACGTCCATTTGAATTTTTATTATAATTTGCGTGTTT
TTTTGTTGCTCTATTTATTGCCTACTTTTCTATTGTCATTCAATTTGGTT
GGATAAATTGTGATAAATAATTCTCTTCAATTGGTATGTTCATAATAATA
TTAGTTATTATTATATTATTGATTTCCTGTGAGATTGGTGGTCGATTGGA
ATCATCATCATCGTCGTCGTTTTAGAAATATCGATAGCTCAGATCGGTAC
TACATGTAAATCAATAAATTATTGTTTATTATTTTTGATATTTTAACAAC
GTTTACGCTTTACGCATTCAAATTAATGCTATTGTAAAAATGATTTTTTT
ATTTCAATTTTACTCAGTCGAGATGAAATGAACTTATTTTTTCATACGTT
GTGAAATTTTTTATTGAAC

protein sequence of SMED30022937-orf-1

>SMED30022937-orf-1 ID=SMED30022937-orf-1|Name=SMED30022937-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=624bp
MANDKSNDWCSSEEDDFKPILKKCKVESDVEEGELSSDDGDEVPLEKLFK
DEDERNRVMRLTEKDREEEIFKRSVELLNIKSRQKAFKKLNEQKKKQSNQ
RPMNKKRSLAEVFSRCTSGDESVHSSSNESSKDNSLPKKKSKASPQPFGR
QKALDNQKRSQNVMLSQLNEIRKQRKEKAEKTKEENTKKPQLDSDSSDLE
EKNIDNVDRQSIISSSSSEQIGETEDQDEDKVVETLEHLSKIRLSRHKME
KWVHMPFFKDLVKGCFVRVNIGEGPSVQPIYRCAEITEVVETVKIYDLGT
TRTNVGLKLKIGKSVTTFRLIFVSNQDFQSSEFDSWRRRVISDGMPLPKL
SFIEEKAQQIKEYSNFSINDEQTMQKVLMSKQRFQKGPVNFAMRKAELTR
LKLGAENDGDDDQAKKYQMEIDELNMTAEKLERKRTTGIKNISYINQRNR
EITQTHVEKAIELEIEENREWEKVGGDPFLREPTKPVLNYRKKKQQLLEK
AALEALEKEAKVEKVEPTVSNNLPIKEEVSLKFDPIDESKININNIHNFE
VHLDIKEENTNPHIAKVISETDKTFDLKDSILNAINNSLGNISATTASAN
SSQSSTNRRVLNLQDYKRRKGLI*

protein sequence of SMED30022937-orf-2

>SMED30022937-orf-2 ID=SMED30022937-orf-2|Name=SMED30022937-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=180bp
MPMPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFRK
VKSKGSREEKEEKRSLGFVLIRGEQLVSLNVDGPPPTEDSTKTPVLPGTG
ATGIGQAVGRGMPAFTTVAAPPPGLTGPPTWGAGPPGSMMQPRPMLAGMP
PGVPGIPPPPFGAPPLPQGGRGFPPFANQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002142	parenchyma

Vocabulary: **INTERPRO**
Term	Definition
IPR036128	Plus3-like_sf
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR004343	Plus-3_dom

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **biological process**
Term	Definition
GO:0006368	transcription elongation from RNA polymerase II promoter
GO:0016570	histone modification

Vocabulary: **cellular component**
Term	Definition
GO:0016593	Cdc73/Paf1 complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..100
None	No IPR available	COILS	Coil	Coil	coord: 414..434
None	No IPR available	COILS	Coil	Coil	coord: 165..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..229
None	No IPR available	PANTHER	PTHR13115:SF8	RNA POLYMERASE-ASSOCIATED PROTEIN RTF1 HOMOLOG	coord: 11..622
None	No IPR available	PANTHER	PTHR13115	UNCHARACTERIZED	coord: 11..622
IPR004343	Plus-3 domain	SMART	SM00719	rtf1	coord: 233..342 e-value: 4.2E-34 score: 129.3
IPR004343	Plus-3 domain	PFAM	PF03126	Plus-3	coord: 239..339 e-value: 2.1E-31 score: 108.6
IPR004343	Plus-3 domain	PROSITE	PS51360	PLUS3	coord: 233..365 score: 36.648
IPR036128	Plus3-like superfamily	GENE3D	G3DSA:2.170.260.30		coord: 231..363 e-value: 1.5E-43 score: 149.7
IPR036128	Plus3-like superfamily	SUPERFAMILY	SSF159042	Plus3-like	coord: 235..363