Lim domain only 1

Overview
NameLim domain only 1
Smed IDSMED30022926
Length (bp)1136
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Lim domain only 1 (SMED30022926) t-SNE clustered cells

Violin plots show distribution of expression levels for Lim domain only 1 (SMED30022926) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Lim domain only 1 (SMED30022926) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Lim domain only 1 (SMED30022926) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022926

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30022926SMESG000028893.1 SmedASXL_007866SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30022926SMESG000028893.1 dd_Smed_v4_17422_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022926SMESG000028893.1 dd_Smed_v4_17422_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30022926SMESG000028893.1 dd_Smed_v4_17422_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
non-ciliated neuronSMED30022926SMESG000028893.1 dd_Smed_v4_17422_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30022926SMESG000028893.1 dd_Smed_v4_17422_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30022926SMESG000028893.1 dd_Smed_v6_17422_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 151.369 bits (381), Expect = 6.092e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   31 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 159
[Close]
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 150.214 bits (378), Expect = 1.026e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
[Close]
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643])

HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lin-11 (pep chromosome:WBcel235:I:10248256:10255327:1 gene:WBGene00003000.1 transcript:ZC247.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lin-11)

HSP 1 Score: 96.2857 bits (238), Expect = 8.727e-22
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 2 
Query:  380 NTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQT----HSIVNNSN 793
            N C+ C +PI + Y+  V  K +H+ CLRC  CD R A +   C+ +  ++LCK D+ R Y     C+ CD K++  + V RA++ ++H+ CF C +C+     GD+ Y+ E N+ +C+ D      + T    H  V+N +
Sbjct:   66 NECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMTCFSRDGLILCKTDFSRRYSQR--CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTATKTSTPTSIHRPVSNGS 202
[Close]
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 92.0485 bits (227), Expect = 1.419e-20
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739
            C+ CQ  I++ + L +D + YHE+CL+CS C+  L+     C+ K     CK  Y R  G    C++CD  IQA ++V RA+N +YHL CF+C+ CK +   G+++ L E N +LC++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRELGPK--CASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 209
[Close]
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 90.5077 bits (223), Expect = 4.081e-20
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739
            C+ CQ  I++ + L +D + YHE+CL+CS C+  L+     C+ K     CK  Y R       C++CD  IQA ++V RA+N +YHL CF+C+ CK +   G+++ L E N +LC++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 211
[Close]
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92])

HSP 1 Score: 87.8113 bits (216), Expect = 4.846e-19
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGL---------CSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739
            C+ CQ  I++ + L +D + YHE+CL+CS C+  L+     C+ K     CK  Y R +  +           C++CD  IQA ++V RA+N +YHL CF+C+ CK +   G+++ L E N +LC++
Sbjct:   98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 220
[Close]
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: ceh-14 (Homeobox protein ceh-14 [Source:UniProtKB/Swiss-Prot;Acc:P20271])

HSP 1 Score: 86.2705 bits (212), Expect = 1.395e-18
Identity = 45/142 (31.69%), Postives = 81/142 (57.04%), Query Frame = 2 
Query:  332 LKPNE---NLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYL-HETNKILCEKDH 745
            L P E   N+N+   ++ +  CS+C + IR+ ++  V+ + YH  CLRCS C     EL   C+++ + M C+  + + +G    CS+C+  I     V +A N++YH++CF C +CK     G++FYL  +  +++C+ D+
Sbjct:   27 LSPQEDFSNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKD---ELGATCFLREDSMYCRAHFYKKFGTK--CSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDY 163
[Close]
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340364)

HSP 1 Score: 154.451 bits (389), Expect = 9.264e-44
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835
            C+ C + I++ Y+L     ++HEDCL+C CCD RL E+    Y K N+MLCKRDYLRL+GNTG C+AC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYL E NKILCE D+   ++  S   H ++    S +    PT +  A N+
Sbjct:   92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
[Close]
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340366)

HSP 1 Score: 154.451 bits (389), Expect = 9.264e-44
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835
            C+ C + I++ Y+L     ++HEDCL+C CCD RL E+    Y K N+MLCKRDYLRL+GNTG C+AC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYL E NKILCE D+   ++  S   H ++    S +    PT +  A N+
Sbjct:   92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
[Close]
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340363)

HSP 1 Score: 156.377 bits (394), Expect = 1.101e-43
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745
            C+ C + I++ Y+L     ++HEDCL+C CCD RL E+    Y K N+MLCKRDYLRL+GNTG C+AC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYL E NKILCE D+
Sbjct:  162 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDY 280
[Close]
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340365)

HSP 1 Score: 154.451 bits (389), Expect = 6.281e-43
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWI---IPTNSIKAANS 835
            C+ C + I++ Y+L     ++HEDCL+C CCD RL E+    Y K N+MLCKRDYLRL+GNTG C+AC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYL E NKILCE D+   ++  S   H ++    S +    PT +  A N+
Sbjct:  163 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 317
[Close]
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340367)

HSP 1 Score: 154.451 bits (389), Expect = 1.024e-42
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835
            C+ C + I++ Y+L     ++HEDCL+C CCD RL E+    Y K N+MLCKRDYLRL+GNTG C+AC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYL E NKILCE D+   ++  S   H ++    S +    PT +  A N+
Sbjct:   92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
[Close]
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646])

HSP 1 Score: 151.369 bits (381), Expect = 5.579e-44
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   40 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 162
[Close]
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646])

HSP 1 Score: 150.214 bits (378), Expect = 7.268e-44
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
[Close]
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 150.599 bits (379), Expect = 7.698e-44
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   35 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 163
[Close]
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 149.828 bits (377), Expect = 1.135e-43
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
[Close]
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774])

HSP 1 Score: 149.443 bits (376), Expect = 1.214e-43
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 123.635 bits (309), Expect = 1.502e-33
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            TC  CQ+ I + Y L    + +HEDCL C  C  RL E+ +  Y K    LC+RDYLRL+G  GLC++CD +I+AFE  MR K+ +YHL+CF C  C+  FCVGD++ L  ++ I+CE+D
Sbjct:   29 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 147
[Close]
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 123.635 bits (309), Expect = 1.595e-33
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            TC  CQ+ I + Y L    + +HEDCL C  C  RL E+ +  Y K    LC+RDYLRL+G  GLC++CD +I+AFE  MR K+ +YHL+CF C  C+  FCVGD++ L  ++ I+CE+D
Sbjct:   26 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 144
[Close]
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679])

HSP 1 Score: 123.25 bits (308), Expect = 1.729e-33
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            TC  CQ+ I + Y L    + +HEDCL C  C  RL E+ +  Y K    LC+RDYLRL+G  GLC++CD +I+AFE  MR K+ +YHL+CF C  C+  FCVGD++ L  ++ I+CE+D
Sbjct:   23 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: ppm1g (protein phosphatase, Mg2+/Mn2+ dependent 1G [Source:Xenbase;Acc:XB-GENE-5916413])

HSP 1 Score: 123.635 bits (309), Expect = 2.218e-33
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757
            C+ C   I + ++L      +H  CL+CSCC A+L E+   CY K+ M+LC+ DY+RL+GN+G CSAC   I A E VMRA+ N+YHL CFTC  C+ R   GD+F+ +    + CE D    L
Sbjct:   23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
[Close]
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo4.2 (LIM domain only 4, gene 2 [Source:NCBI gene;Acc:548539])

HSP 1 Score: 122.865 bits (307), Expect = 5.444e-33
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSI 820
             C+ C   I + ++L   ++ +H  CL+CSCC A+L E+   CY K+ M+LC+ DY+RL+G++G CSAC   I A E VMRA+ ++YHL CFTC  C+ R   GD+F+ +    I CE D    L S  H     SN  ++P   +
Sbjct:   23 ACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFH-YVNGAIFCEHDRPTGLLS-GHLNPLQSNPPMLPDQKV 166
[Close]
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 150.214 bits (378), Expect = 7.042e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
[Close]
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810])

HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q99MB5|LMO3_RAT (LIM domain only protein 3 OS=Rattus norvegicus OX=10116 GN=Lmo3 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 4.166e-43
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   10 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q9YH16|LMO3_XENLA (LIM domain only protein 3 OS=Xenopus laevis OX=8355 GN=lmo3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.476e-43
Identity = 72/130 (55.38%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + +S
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYS 152
[Close]
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q8JFQ2|RBTN1_DANRE (Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.487e-43
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
[Close]
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q5RBW7|LMO3_PONAB (LIM domain only protein 3 OS=Pongo abelii OX=9601 GN=LMO3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.985e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q8BZL8|LMO3_MOUSE (LIM domain only protein 3 OS=Mus musculus OX=10090 GN=Lmo3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.985e-43
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A5J4NMJ5 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013332 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.452e-51
Identity = 103/245 (42.04%), Postives = 144/245 (58.78%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQTHS----IVNNSNSWIIPTNS-IKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS--GNLKNHTNSGIQTITT---MHQNCDSQISPNKF----EDVSSGYDSPSPIS 1072
            C  C++PIRE ++L  D   +HEDCLRC+CCD RLAELDK CY KA M LC+RDYLRLYG TG C  C  +I AFE VMR   + YHL+CF C  C+MRFCVGD+FY++    ILCE+D+    ++ SQT +    ++NN +  +  T+  I + N +  V N   A+ P +     + +  S       K+  G   +   SGI+T +T       CD +I   +     +++SSGY SPSP++
Sbjct:    3 CFKCRQPIREAHLLFADDHYWHEDCLRCACCDVRLAELDKVCYFKAKMPLCRRDYLRLYGRTGECVVCQKRIFAFELVMRIFESAYHLNCFCCQRCQMRFCVGDRFYVYR-RAILCEQDYTELALIGSQTAAFSPTLLNNWSKTVEATSQHIASQNFYFQVPN--TAMAPSVANCAGIRSQPSLKATQVIKANVGKTASKFGSGIETFSTDSFPTIKCDDEIYEFQMSNCSDELSSGYGSPSPLA 244
[Close]
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A3R7FKC4 (LIM domain only protein 3 OS=Clonorchis sinensis OX=79923 GN=lmo3 PE=4 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.306e-50
Identity = 93/218 (42.66%), Postives = 129/218 (59.17%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH--------NIILCSQTHSIV----------NNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS-GNLKNHTNSGIQTI 982
            CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C  C  +I  FE+VMR + N+YHL+CF C  C++RFC+GDKFYL +   ILCE+D+           LC +T  ++          + S +  IP+  I+  N         +   P I+     +++ S   P ++K   +LK H  S  Q +
Sbjct:   11 CSKCEQPIREAHLLVADNKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQENVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDYIDSKMLSIRPNLCQETSEVLAYKTAVPTMCHTSTAQTIPSYGIEFGNKL-------SKTQPTIKTLSRQNDMKSILQPRQRKKVASLKTHCGSHDQEV 220
[Close]
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A4S2MCN9 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000975 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.752e-49
Identity = 90/215 (41.86%), Postives = 134/215 (62.33%), Query Frame = 2 
Query:  365 RSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH---NII-----LCSQTHSIVNNSNSWIIP----TNSIKAANSF-LSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS-GNLKNHTNS 967
            R+     CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C  C  +I  FE+VMR + N+YHL+CF C  C++RFC+GDKFYL +   ILCE+D+    ++     +C +T  ++    +  +P    T++I+    + +   N  ++  P I+     +++ S+  P ++K   + K H  S
Sbjct:    2 RATATMLCSKCEQPIREAHLLVADDKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQGNVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDYIDSKVLSIRPNMCQETSGMLTYKTT--VPTMCHTSTIQTIPPYGIEFGNKLSSRQPTIKTLSRQNDMKSTLQPRQRKKVASWKAHCGS 213
[Close]
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A1S8X7H2 (LIM domain protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_01474 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.942e-48
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745
            CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C  C  +I  FE+VMR + N+YHL+CF C  C++RFC+GDKFYL +   ILCE+D+
Sbjct:    9 CSKCEQPIREAHLLVADDKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQENVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDY 127
[Close]
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A1Z5LG36 (Rhombotin (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.593e-48
Identity = 82/166 (49.40%), Postives = 105/166 (63.25%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAAN--SFLSVNNHHNALNPL 877
            C+ CQ+PIRE ++L    +++HEDCL+C+CCD RL E+    + KAN++LCKRDYLRL+G TGLCSAC   I AFE VMRA+ N+YHL+CF C  C  RFCVGD+FYLHE N+ILCE D+              S    +P     AA+     SV   H+   PL
Sbjct:   43 CAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKPIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHE-NRILCEYDYEERALMAGVPPPFFSAPHGVPPGPGNAASVIPLTSVKRQHSMEEPL 207
[Close]
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 152.14 bits (383), Expect = 7.662e-44
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   89 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 217
[Close]
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 149.828 bits (377), Expect = 9.622e-44
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
[Close]
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646])

HSP 1 Score: 150.214 bits (378), Expect = 1.028e-43
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   34 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 156
[Close]
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888])

HSP 1 Score: 149.443 bits (376), Expect = 1.029e-43
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+   L  + ++
Sbjct:   13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
[Close]
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo4a (LIM domain transcription factor LMO4.1-like [Source:NCBI gene;Acc:103024382])

HSP 1 Score: 123.635 bits (309), Expect = 1.920e-33
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSI 820
            +C+ C   I + ++L   ++ +H  CL+CSCC A+L E+   CY K  M+LC+ DY+RL+G++G CSAC   I A E VMRA+ N+YHL CFTC  C+ R   GD+F+ +    I CE D        +H +    NS ++P   +
Sbjct:   35 SCAGCGGRISDRFLLFSMERYWHTRCLKCSCCQAQLGEIGTTCYSKGGMILCRTDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLMPGDRFH-YVNGTIFCEHDRPGGALLSSH-LTPLQNSTLLPDQKV 178
[Close]
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 120.168 bits (300), Expect = 3.744e-33
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            C  C++PI + Y+L   ++ +HEDCL C  C  RL E+ +  Y K    LC+RDYLRL+G  G C++C  +I+AFE  MR ++ +YHL+CF C  C+  FCVGD++ L  ++ I+CE+D
Sbjct:   30 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSD-IICEQD 147
[Close]
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332])

HSP 1 Score: 118.627 bits (296), Expect = 1.341e-32
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            C  C++PI + Y+L   ++ +HEDCL C  C  RL E+ +  Y K    LC+RDYLRL+G  G C++C  +I+AFE  MR ++ +YHL+CF C  C+  FCVGD++ L  ++ I+CE+D
Sbjct:   29 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSD-IICEQD 146
[Close]
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo4b (LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570])

HSP 1 Score: 109.383 bits (272), Expect = 6.098e-29
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 2 
Query:  350 LNSEC----RSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742
            +NS+C     +     C+ C   I + ++L      +H  CL+CSCC A+L +L   CY +  M+LC+ DY+R++G++G C+AC   I A E VM+ + N+YHL CF C  C+ R   GD+F+ +    + CE D
Sbjct:    2 VNSQCPEPQATGPPKRCAGCGGKIADRFLLYSMDCYWHSRCLKCSCCQAQLGDLGTSCYTRQGMILCRDDYIRMFGSSGACNACGQSIPASELVMKTQGNVYHLKCFACATCRTRLVPGDRFH-YVNGSLFCEHD 135
[Close]
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002189.1 (pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gene:ENSPMAG00000001979.1 transcript:ENSPMAT00000002189.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.7658 bits (138), Expect = 8.032e-10
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 2 
Query:  554 RLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            RL+G    C+ C+      ++VMRA+++IYH++CF C  C  +   GD+F L +   +LC  D +
Sbjct:    1 RLFGIK--CAKCNASFSKTDFVMRARSHIYHMECFRCETCSRQLLPGDEFALRDGGGLLCRADQH 63
[Close]
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006267.1 (pep scaffold:Pmarinus_7.0:GL478686:5064:37345:-1 gene:ENSPMAG00000005668.1 transcript:ENSPMAT00000006267.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.447 bits (119), Expect = 1.721e-7
Identity = 41/149 (27.52%), Postives = 64/149 (42.95%), Query Frame = 2 
Query:  422 ILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIV----NNSNSWIIPTNSIKAANSFLSVNNH 856
            +L V+ + +H  C  C  C   LA+   F  +K    +C  DY RLYG    C AC   ++    V+ A    YH  CF C +C+  F  G +   +   + LC +      C+Q  S V    +N ++       IK   + L++  H
Sbjct:   36 VLRVENRHFHVSCFTCKVCGCDLAQCGFF--VKNGEYVCTLDYQRLYGTR--CQACGDFVEG--EVVTALGRTYHPRCFVCSVCRQPFPSGARVTFN-GRECLCHE------CTQPISPVLRDPSNPSNCAGCGRDIKNGQALLALERH 171
[Close]
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO48809 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIH4])

HSP 1 Score: 142.124 bits (357), Expect = 2.622e-41
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757
            K TC  C   I E ++L    + +HEDCL+CSCC+ RL E+    Y KAN++LCKRDYLRL+G  G CS C   I AFE VMRA++N+YHL+CF+C  C  RFCVGDKFYL   N+ILC  D+  ++
Sbjct:   17 KRTCGGCGVLINERFLLKALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYLRLFGTRGFCSVCCKTIPAFEMVMRARDNVYHLECFSCQRCNQRFCVGDKFYLF-NNRILCVDDYEEMM 142
[Close]
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO37872 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEJ4])

HSP 1 Score: 124.79 bits (312), Expect = 5.330e-35
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745
            C+ C   I+  ++L    + +HE+CL+CS C   L+E+    Y + +++LCKRDY+R++G TG+CS C   I   E VMRA+ ++YHLDCF C +C+ RFCVGDKFYLH+ N +LCE D+
Sbjct:    2 CAQCGNGIQSQFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFGTTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQ-NTVLCEDDY 120
[Close]
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO37316 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG43])

HSP 1 Score: 114.39 bits (285), Expect = 1.059e-30
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTH 772
             C+ C   I + ++L+   + +H +CL+CSCC+ARL E+   CY K  M+LCK DY+RLYGN+G C+ C   I A E VM+    +YHL CFTC  C  +   GD+F++    ++ CE D   +L  Q H
Sbjct:   18 VCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHV-VNGRLFCENDDPNLLKQQLH 146
[Close]
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO46073 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR95])

HSP 1 Score: 91.6633 bits (226), Expect = 7.702e-21
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKM-YHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNII 754
            C  C   I + YIL V   + +H  CL+C+ C   L E    C+++     CKRDY+RL+G    C+ C L     ++VMRA+N IYH+DCF C  C  +   GD+F L E + + C+ DH I+
Sbjct:   17 CVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDE-KCTCFVREGKTYCKRDYVRLFGTK--CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALRE-DGLFCKADHEIV 136
[Close]
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: LHX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E9])

HSP 1 Score: 85.1149 bits (209), Expect = 2.163e-19
Identity = 59/211 (27.96%), Postives = 92/211 (43.60%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWI-IPTNSIKAANSFLSVNNHHNALNPLIE-KNKNVSNIISSWLPTEQKSGNLK----NHTNSGIQTITTMHQN 1000
            C+ CQ PI + ++L V   ++H  C++CS C   L E    C+ +   + CK D+ R YG    CS CD  I   + V RAK+ ++H+DCF C  CK +   GD+ Y       +C  D+        HS   N +  I  P +     +  L          P    K K +  + S++  T + S N++      T   ++ I    QN
Sbjct:    5 CAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTER---CFSREGKLFCKTDFYRRYGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDY-------YHSHPTNLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQN 203
[Close]
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo1 (rhombotin-1 [Source:NCBI gene;Acc:101162198])

HSP 1 Score: 150.214 bits (378), Expect = 6.122e-44
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:  377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            +  C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
[Close]
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:101154994])

HSP 1 Score: 149.443 bits (376), Expect = 1.041e-43
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            C+ C R I++ Y+L    K +HEDCL+C+CCD RL E+    Y KAN++LC+RDYLRL+G TG C+AC   I AFE VMRAK+N+YHLDCF C LC  RFCVGDKF+L + N ILC+ D+ 
Sbjct:   24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYE 143
[Close]
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: ENSORLT00000030604.1 (rhombotin-1 [Source:NCBI gene;Acc:101174827])

HSP 1 Score: 139.813 bits (351), Expect = 6.278e-40
Identity = 63/121 (52.07%), Postives = 87/121 (71.90%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748
            C+ C   I + ++L    + +HEDCL+C+CCD RL  +    Y ++N++LC+RDYLRL+G TG C+AC   I AFE VMRA++N+YHLDCF C LC+ RFCVGDKF+L + N ILC+ D+ 
Sbjct:   23 CAGCNGKILDRFMLQALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDKFFL-KNNMILCQLDYE 142
[Close]
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo4b (LIM domain only 4 [Source:NCBI gene;Acc:101173927])

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-33
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757
            C+ C   I + ++L      +H  CL+CSCC A+L E+   CY K+ M+LC+ DY+RL+GN+G CSAC   I A E VMRA+ N+YHL CFTC  C+ R   GD+F+ +    + CE D    L
Sbjct:   23 CAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
[Close]
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo4b (LIM domain only 4 [Source:NCBI gene;Acc:101173927])

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-33
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757
            C+ C   I + ++L      +H  CL+CSCC A+L E+   CY K+ M+LC+ DY+RL+GN+G CSAC   I A E VMRA+ N+YHL CFTC  C+ R   GD+F+ +    + CE D    L
Sbjct:   23 CAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
[Close]
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000028893.1 (SMESG000028893.1)

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 2 
Query:  326 ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISGAV 1081
            ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISG V
Sbjct:   13 ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISGTV 264
[Close]
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000037556.1 (SMESG000037556.1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-32
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH-NIILCSQTHSIVNNSNSWII 805
            C+ CQ  I E ++L VD + +HEDCLRC+CC+ RL E+    Y +A+++LCKRDYLR++G+ G C+ACD  I AFE VMRA + +YHL+CF C  C  RFCVGDK YL+  N+ILCE D+  I+L ++  S +  + S++ 
Sbjct:   14 CTSCQEVIAESHLLKVDNQYWHEDCLRCNCCNCRLGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLY-GNRILCEADYEEIMLYNKIASQIPLTGSFVF 153
[Close]
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000071273.1 (SMESG000071273.1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.290e-21
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 2 
Query:  386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNI 751
            C  C+ PI +  +L V    +H  CL C+ C   L  +DK CY K++ + CK D+ R YG    C+ACD  I A E + +A+NNIYHL+CF C  C  +   G++F+L  + K++C  D  I
Sbjct:   46 CIACKGPILDRVVLKVGLSTWHVRCLHCTDCGIPL--IDK-CYSKSDEIFCKEDFFRRYGTR--CAACDEVIPASEVIRKAQNNIYHLECFACISCHRQLNTGEEFFLLSSRKLMCRPDFEI 162
[Close]
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000005304.1 (SMESG000005304.1)

HSP 1 Score: 73.559 bits (179), Expect = 4.905e-14
Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 2 
Query:  383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYM-KANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKIL-CEKDH 745
            +C+ C   I + Y+  ++   +H+ C  CS C+  L E    C+M K N + C+  Y +    T  CS C+L +Q  E  M A N +YH+ CF C  CK     GD+F LH    +L C  D+
Sbjct:   33 SCTGCNGVINDKYLFSLNDTFWHKSCALCSICEEVLEES---CFMLKDNKLFCRNHYYKSSFATK-CSGCNLPMQTHEVAMHALNRVYHVTCFACSCCKQLLQRGDEFILHGPESLLVCRADY 151
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BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000010916.1 (SMESG000010916.1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.141e-14
Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 2 
Query:  341 NENLNSECRSDIKNT----CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARL-AELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYL 709
             E++N    +DI N     C+ C+  I + + L    KM+H +CLRC  C   L +E+   C+ +  ++ CK DY RL+G    C  C +KI   E VMR KN ++H+ CF C  C      G+ F L
Sbjct:   12 GESINQSNSTDIYNQNSMNCAGCKSKITDRFFLKAADKMWHVNCLRCWICHVELHSEMS--CFTRDGVVYCKEDYSRLFGRK-CCIRCGVKITYDELVMRVKNLVFHVTCFCCVQCGRMLNPGEYFGL 136
The following BLAST results are available for this feature:
BLAST of Lim domain only 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
LMO36.092e-4454.62LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664... [more]
LMO31.026e-4354.62LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664... [more]
LMO31.246e-4354.62LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664... [more]
LMO31.246e-4354.62LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664... [more]
LMO31.246e-4354.62LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:664... [more]
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BLAST of Lim domain only 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lin-118.727e-2233.10pep chromosome:WBcel235:I:10248256:10255327:1 gene... [more]
lim-41.419e-2038.98LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0... [more]
lim-44.081e-2038.14LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0... [more]
lim-44.846e-1935.43LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0... [more]
ceh-141.395e-1831.69Homeobox protein ceh-14 [Source:UniProtKB/Swiss-P... [more]
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BLAST of Lim domain only 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Bx9.264e-4449.36gene:FBgn0265598 transcript:FBtr0340364[more]
Bx9.264e-4449.36gene:FBgn0265598 transcript:FBtr0340366[more]
Bx1.101e-4358.33gene:FBgn0265598 transcript:FBtr0340363[more]
Bx6.281e-4349.36gene:FBgn0265598 transcript:FBtr0340365[more]
Bx1.024e-4249.36gene:FBgn0265598 transcript:FBtr0340367[more]
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BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo15.579e-4455.65LIM domain only 1 [Source:NCBI gene;Acc:280646][more]
lmo17.268e-4455.65LIM domain only 1 [Source:NCBI gene;Acc:280646][more]
lmo37.698e-4454.62LIM domain only 3 [Source:NCBI gene;Acc:553774][more]
lmo31.135e-4354.62LIM domain only 3 [Source:NCBI gene;Acc:553774][more]
lmo31.214e-4354.62LIM domain only 3 [Source:NCBI gene;Acc:553774][more]
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BLAST of Lim domain only 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo21.502e-3347.50LIM domain only 2 [Source:NCBI gene;Acc:496679][more]
lmo21.595e-3347.50LIM domain only 2 [Source:NCBI gene;Acc:496679][more]
lmo21.729e-3347.50LIM domain only 2 [Source:NCBI gene;Acc:496679][more]
ppm1g2.218e-3344.35protein phosphatase, Mg2+/Mn2+ dependent 1G [Sourc... [more]
lmo4.25.444e-3340.41LIM domain only 4, gene 2 [Source:NCBI gene;Acc:54... [more]
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BLAST of Lim domain only 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Lmo37.042e-4454.62LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281... [more]
Lmo38.556e-4454.62LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281... [more]
Lmo38.556e-4454.62LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281... [more]
Lmo38.556e-4454.62LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281... [more]
Lmo38.556e-4454.62LIM domain only 3 [Source:MGI Symbol;Acc:MGI:10281... [more]
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BLAST of Lim domain only 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q99MB5|LMO3_RAT4.166e-4352.63LIM domain only protein 3 OS=Rattus norvegicus OX=... [more]
sp|Q9YH16|LMO3_XENLA4.476e-4355.38LIM domain only protein 3 OS=Xenopus laevis OX=835... [more]
sp|Q8JFQ2|RBTN1_DANRE5.487e-4355.65Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV... [more]
sp|Q5RBW7|LMO3_PONAB5.985e-4354.62LIM domain only protein 3 OS=Pongo abelii OX=9601 ... [more]
sp|Q8BZL8|LMO3_MOUSE5.985e-4354.62LIM domain only protein 3 OS=Mus musculus OX=10090... [more]
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BLAST of Lim domain only 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5J4NMJ52.452e-5142.04Uncharacterized protein OS=Paragonimus westermani ... [more]
A0A3R7FKC44.306e-5042.66LIM domain only protein 3 OS=Clonorchis sinensis O... [more]
A0A4S2MCN92.752e-4941.86Uncharacterized protein OS=Opisthorchis felineus O... [more]
A0A1S8X7H23.942e-4862.50LIM domain protein (Fragment) OS=Opisthorchis vive... [more]
A0A1Z5LG364.593e-4849.40Rhombotin (Fragment) OS=Ornithodoros moubata OX=69... [more]
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BLAST of Lim domain only 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo37.662e-4454.62LIM domain only 3 [Source:NCBI gene;Acc:103033888][more]
lmo39.622e-4454.62LIM domain only 3 [Source:NCBI gene;Acc:103033888][more]
lmo11.028e-4355.65LIM domain only 1 [Source:NCBI gene;Acc:280646][more]
lmo31.029e-4354.62LIM domain only 3 [Source:NCBI gene;Acc:103033888][more]
lmo4a1.920e-3339.73LIM domain transcription factor LMO4.1-like [Sourc... [more]
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BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo23.744e-3344.54LIM domain only 2 (rhombotin-like 1) [Source:NCBI ... [more]
lmo21.341e-3244.54LIM domain only 2 (rhombotin-like 1) [Source:NCBI ... [more]
lmo4b6.098e-2937.04LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-03013... [more]
ENSPMAT00000002189.18.032e-1035.38pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gen... [more]
ENSPMAT00000006267.11.721e-727.52pep scaffold:Pmarinus_7.0:GL478686:5064:37345:-1 g... [more]
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BLAST of Lim domain only 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Lim domain only 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO488092.622e-4153.54Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO378725.330e-3547.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO373161.059e-3041.54Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO460737.702e-2138.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
LHX12.163e-1927.96Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Lim domain only 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
lmo16.122e-4455.65rhombotin-1 [Source:NCBI gene;Acc:101162198][more]
lmo31.041e-4357.85LIM domain only 3 [Source:NCBI gene;Acc:101154994][more]
ENSORLT00000030604.16.278e-4052.07rhombotin-1 [Source:NCBI gene;Acc:101174827][more]
lmo4b1.912e-3344.35LIM domain only 4 [Source:NCBI gene;Acc:101173927][more]
lmo4b1.912e-3344.35LIM domain only 4 [Source:NCBI gene;Acc:101173927][more]
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BLAST of Lim domain only 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000028893.10.000e+099.60SMESG000028893.1[more]
SMESG000037556.11.014e-3249.65SMESG000037556.1[more]
SMESG000071273.13.290e-2139.34SMESG000071273.1[more]
SMESG000005304.14.905e-1434.15SMESG000005304.1[more]
SMESG000010916.15.141e-1435.16SMESG000010916.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022926 ID=SMED30022926|Name=Lim domain only 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1136bp
GAAAAATTCTCTCGTGCAATTTTTAATTTTTGTAAGCATGAAATTGAAAG
AGTTTTAGTGGATGTATTGTTGTTCTTAGTCAACAGGCCGACATTATTGT
TCTACTTTCTATTCAATACGATTGATCTTTACGGCCAGGCAATTTATTAT
TAATTTCCTCGATTCCTATTGGCTGATTGTCATCCTCACTTTCATATAAT
TTAGAAATTGCTTTTAACAGAATCAAATTAAAACATTATAATAATTACAA
TTATTACAATTATTTCCATCAAATATATATTATAAGAAAATGTCAAAAAA
TTCCTTGATATCTAATAAAAACAATATTTGCTTGAAACCAAATGAGAATT
TGAATTCAGAATGCAGATCAGATATTAAAAATACTTGTAGTATATGTCAG
AGACCGATCAGAGAAATGTACATTCTTATTGTCGATCAGAAAATGTATCA
CGAAGATTGCTTGCGATGTAGCTGTTGTGATGCTCGGCTGGCGGAGCTTG
ATAAATTTTGTTATATGAAAGCCAATATGATGCTTTGCAAAAGAGACTAT
TTAAGGCTGTATGGAAATACTGGGTTGTGCTCAGCTTGTGATCTTAAGAT
ACAAGCTTTCGAATATGTAATGAGAGCAAAGAATAATATATATCATTTAG
ATTGTTTTACATGTCATCTTTGTAAAATGAGGTTTTGCGTAGGAGATAAA
TTTTATTTACATGAAACCAACAAAATTCTTTGCGAGAAAGATCACAATAT
TATTTTATGTTCACAGACTCATTCCATAGTTAATAACAGTAATAGTTGGA
TAATTCCAACGAATTCAATTAAAGCCGCTAATTCATTTTTGTCAGTAAAT
AATCATCATAATGCACTAAATCCCTTAATTGAAAAAAATAAAAATGTCAG
TAATATTATTTCCTCTTGGTTACCAACAGAACAAAAATCTGGAAATTTGA
AAAATCATACGAATTCAGGGATTCAAACCATAACCACAATGCACCAAAAT
TGTGATTCACAAATCAGTCCAAATAAATTTGAGGATGTGTCAAGTGGATA
TGACTCCCCTAGTCCCATTAGTGGAGCAGTGTGACCACCACAAATATTTA
TAATAGAAAATCTGATTTATCATTCCAGATCCTGTT
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protein sequence of SMED30022926-orf-1

>SMED30022926-orf-1 ID=SMED30022926-orf-1|Name=SMED30022926-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp
MSKNSLISNKNNICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQ
KMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSAC
DLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK
DHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKN
KNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDV
SSGYDSPSPISGAV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 32..86
e-value: 7.8E-12
score: 55.3
coord: 96..151
e-value: 1.4E-10
score: 51.2
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 97..152
e-value: 2.1E-11
score: 43.9
coord: 33..89
e-value: 2.8E-10
score: 40.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 33..67
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 97..132
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 95..158
score: 11.682
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 31..93
score: 12.603
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 90..206
e-value: 1.1E-17
score: 66.4
NoneNo IPR availableGENE3DG3DSA:2.10.110.10coord: 16..89
e-value: 6.0E-14
score: 53.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..264
NoneNo IPR availablePANTHERPTHR45787:SF6BEADEX, ISOFORM Dcoord: 19..199
NoneNo IPR availablePANTHERPTHR45787FAMILY NOT NAMEDcoord: 19..199
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 58..94
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 93..123