Lim domain only 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022926 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]) HSP 1 Score: 151.369 bits (381), Expect = 6.092e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 31 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 159
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]) HSP 1 Score: 150.214 bits (378), Expect = 1.026e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]) HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]) HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Human
Match: LMO3 (LIM domain only 3 [Source:HGNC Symbol;Acc:HGNC:6643]) HSP 1 Score: 149.828 bits (377), Expect = 1.246e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lin-11 (pep chromosome:WBcel235:I:10248256:10255327:1 gene:WBGene00003000.1 transcript:ZC247.3.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lin-11) HSP 1 Score: 96.2857 bits (238), Expect = 8.727e-22 Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 2 Query: 380 NTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQT----HSIVNNSN 793 N C+ C +PI + Y+ V K +H+ CLRC CD R A + C+ + ++LCK D+ R Y C+ CD K++ + V RA++ ++H+ CF C +C+ GD+ Y+ E N+ +C+ D + T H V+N + Sbjct: 66 NECAACAQPILDRYVFTVLGKCWHQSCLRC--CDCR-APMSMTCFSRDGLILCKTDFSRRYSQR--CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTATKTSTPTSIHRPVSNGS 202
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92]) HSP 1 Score: 92.0485 bits (227), Expect = 1.419e-20 Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739 C+ CQ I++ + L +D + YHE+CL+CS C+ L+ C+ K CK Y R G C++CD IQA ++V RA+N +YHL CF+C+ CK + G+++ L E N +LC++ Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRELGPK--CASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 209
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92]) HSP 1 Score: 90.5077 bits (223), Expect = 4.081e-20 Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739 C+ CQ I++ + L +D + YHE+CL+CS C+ L+ C+ K CK Y R C++CD IQA ++V RA+N +YHL CF+C+ CK + G+++ L E N +LC++ Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 211
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: lim-4 (LIM domain family [Source:UniProtKB/TrEMBL;Acc:A0A1X7RC92]) HSP 1 Score: 87.8113 bits (216), Expect = 4.846e-19 Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGL---------CSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEK 739 C+ CQ I++ + L +D + YHE+CL+CS C+ L+ C+ K CK Y R + + C++CD IQA ++V RA+N +YHL CF+C+ CK + G+++ L E N +LC++ Sbjct: 98 CTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLSNK---CFYKDKTFYCKGCYFRTHVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKRQLSTGEEYALQEGN-LLCKQ 220
BLAST of Lim domain only 1 vs. Ensembl Celegans
Match: ceh-14 (Homeobox protein ceh-14 [Source:UniProtKB/Swiss-Prot;Acc:P20271]) HSP 1 Score: 86.2705 bits (212), Expect = 1.395e-18 Identity = 45/142 (31.69%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 332 LKPNE---NLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYL-HETNKILCEKDH 745 L P E N+N+ ++ + CS+C + IR+ ++ V+ + YH CLRCS C EL C+++ + M C+ + + +G CS+C+ I V +A N++YH++CF C +CK G++FYL + +++C+ D+ Sbjct: 27 LSPQEDFSNVNAGHPNNEEAICSLCDKKIRDRFVSKVNGRCYHSSCLRCSTCKD---ELGATCFLREDSMYCRAHFYKKFGTK--CSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDY 163
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340364) HSP 1 Score: 154.451 bits (389), Expect = 9.264e-44 Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835 C+ C + I++ Y+L ++HEDCL+C CCD RL E+ Y K N+MLCKRDYLRL+GNTG C+AC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYL E NKILCE D+ ++ S H ++ S + PT + A N+ Sbjct: 92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340366) HSP 1 Score: 154.451 bits (389), Expect = 9.264e-44 Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835 C+ C + I++ Y+L ++HEDCL+C CCD RL E+ Y K N+MLCKRDYLRL+GNTG C+AC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYL E NKILCE D+ ++ S H ++ S + PT + A N+ Sbjct: 92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340363) HSP 1 Score: 156.377 bits (394), Expect = 1.101e-43 Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745 C+ C + I++ Y+L ++HEDCL+C CCD RL E+ Y K N+MLCKRDYLRL+GNTG C+AC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYL E NKILCE D+ Sbjct: 162 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDY 280
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340365) HSP 1 Score: 154.451 bits (389), Expect = 6.281e-43 Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWI---IPTNSIKAANS 835 C+ C + I++ Y+L ++HEDCL+C CCD RL E+ Y K N+MLCKRDYLRL+GNTG C+AC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYL E NKILCE D+ ++ S H ++ S + PT + A N+ Sbjct: 163 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 317
BLAST of Lim domain only 1 vs. Ensembl Fly
Match: Bx (gene:FBgn0265598 transcript:FBtr0340367) HSP 1 Score: 154.451 bits (389), Expect = 1.024e-42 Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQT-HSIVNNSNSWII---PTNSIKAANS 835 C+ C + I++ Y+L ++HEDCL+C CCD RL E+ Y K N+MLCKRDYLRL+GNTG C+AC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYL E NKILCE D+ ++ S H ++ S + PT + A N+ Sbjct: 92 CAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCE-NKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNT 246
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646]) HSP 1 Score: 151.369 bits (381), Expect = 5.579e-44 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 40 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 162
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646]) HSP 1 Score: 150.214 bits (378), Expect = 7.268e-44 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774]) HSP 1 Score: 150.599 bits (379), Expect = 7.698e-44 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 35 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 163
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774]) HSP 1 Score: 149.828 bits (377), Expect = 1.135e-43 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:553774]) HSP 1 Score: 149.443 bits (376), Expect = 1.214e-43 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679]) HSP 1 Score: 123.635 bits (309), Expect = 1.502e-33 Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 TC CQ+ I + Y L + +HEDCL C C RL E+ + Y K LC+RDYLRL+G GLC++CD +I+AFE MR K+ +YHL+CF C C+ FCVGD++ L ++ I+CE+D Sbjct: 29 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 147
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679]) HSP 1 Score: 123.635 bits (309), Expect = 1.595e-33 Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 TC CQ+ I + Y L + +HEDCL C C RL E+ + Y K LC+RDYLRL+G GLC++CD +I+AFE MR K+ +YHL+CF C C+ FCVGD++ L ++ I+CE+D Sbjct: 26 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 144
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo2 (LIM domain only 2 [Source:NCBI gene;Acc:496679]) HSP 1 Score: 123.25 bits (308), Expect = 1.729e-33 Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 TC CQ+ I + Y L + +HEDCL C C RL E+ + Y K LC+RDYLRL+G GLC++CD +I+AFE MR K+ +YHL+CF C C+ FCVGD++ L ++ I+CE+D Sbjct: 23 TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSD-IVCEQD 141
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: ppm1g (protein phosphatase, Mg2+/Mn2+ dependent 1G [Source:Xenbase;Acc:XB-GENE-5916413]) HSP 1 Score: 123.635 bits (309), Expect = 2.218e-33 Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757 C+ C I + ++L +H CL+CSCC A+L E+ CY K+ M+LC+ DY+RL+GN+G CSAC I A E VMRA+ N+YHL CFTC C+ R GD+F+ + + CE D L Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Match: lmo4.2 (LIM domain only 4, gene 2 [Source:NCBI gene;Acc:548539]) HSP 1 Score: 122.865 bits (307), Expect = 5.444e-33 Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSI 820 C+ C I + ++L ++ +H CL+CSCC A+L E+ CY K+ M+LC+ DY+RL+G++G CSAC I A E VMRA+ ++YHL CFTC C+ R GD+F+ + I CE D L S H SN ++P + Sbjct: 23 ACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNRLVPGDRFH-YVNGAIFCEHDRPTGLLS-GHLNPLQSNPPMLPDQKV 166
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810]) HSP 1 Score: 150.214 bits (378), Expect = 7.042e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810]) HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810]) HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810]) HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Mouse
Match: Lmo3 (LIM domain only 3 [Source:MGI Symbol;Acc:MGI:102810]) HSP 1 Score: 149.828 bits (377), Expect = 8.556e-44 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q99MB5|LMO3_RAT (LIM domain only protein 3 OS=Rattus norvegicus OX=10116 GN=Lmo3 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 4.166e-43 Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 10 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q9YH16|LMO3_XENLA (LIM domain only protein 3 OS=Xenopus laevis OX=8355 GN=lmo3 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 4.476e-43 Identity = 72/130 (55.38%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + +S Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYS 152
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q8JFQ2|RBTN1_DANRE (Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 5.487e-43 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q5RBW7|LMO3_PONAB (LIM domain only protein 3 OS=Pongo abelii OX=9601 GN=LMO3 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 5.985e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Match: sp|Q8BZL8|LMO3_MOUSE (LIM domain only protein 3 OS=Mus musculus OX=10090 GN=Lmo3 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 5.985e-43 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A5J4NMJ5 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0013332 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.452e-51 Identity = 103/245 (42.04%), Postives = 144/245 (58.78%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN--IILCSQTHS----IVNNSNSWIIPTNS-IKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS--GNLKNHTNSGIQTITT---MHQNCDSQISPNKF----EDVSSGYDSPSPIS 1072 C C++PIRE ++L D +HEDCLRC+CCD RLAELDK CY KA M LC+RDYLRLYG TG C C +I AFE VMR + YHL+CF C C+MRFCVGD+FY++ ILCE+D+ ++ SQT + ++NN + + T+ I + N + V N A+ P + + + S K+ G + SGI+T +T CD +I + +++SSGY SPSP++ Sbjct: 3 CFKCRQPIREAHLLFADDHYWHEDCLRCACCDVRLAELDKVCYFKAKMPLCRRDYLRLYGRTGECVVCQKRIFAFELVMRIFESAYHLNCFCCQRCQMRFCVGDRFYVYR-RAILCEQDYTELALIGSQTAAFSPTLLNNWSKTVEATSQHIASQNFYFQVPN--TAMAPSVANCAGIRSQPSLKATQVIKANVGKTASKFGSGIETFSTDSFPTIKCDDEIYEFQMSNCSDELSSGYGSPSPLA 244
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A3R7FKC4 (LIM domain only protein 3 OS=Clonorchis sinensis OX=79923 GN=lmo3 PE=4 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.306e-50 Identity = 93/218 (42.66%), Postives = 129/218 (59.17%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH--------NIILCSQTHSIV----------NNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS-GNLKNHTNSGIQTI 982 CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C C +I FE+VMR + N+YHL+CF C C++RFC+GDKFYL + ILCE+D+ LC +T ++ + S + IP+ I+ N + P I+ +++ S P ++K +LK H S Q + Sbjct: 11 CSKCEQPIREAHLLVADNKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQENVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDYIDSKMLSIRPNLCQETSEVLAYKTAVPTMCHTSTAQTIPSYGIEFGNKL-------SKTQPTIKTLSRQNDMKSILQPRQRKKVASLKTHCGSHDQEV 220
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A4S2MCN9 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000975 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 2.752e-49 Identity = 90/215 (41.86%), Postives = 134/215 (62.33%), Query Frame = 2 Query: 365 RSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH---NII-----LCSQTHSIVNNSNSWIIP----TNSIKAANSF-LSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKS-GNLKNHTNS 967 R+ CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C C +I FE+VMR + N+YHL+CF C C++RFC+GDKFYL + ILCE+D+ ++ +C +T ++ + +P T++I+ + + N ++ P I+ +++ S+ P ++K + K H S Sbjct: 2 RATATMLCSKCEQPIREAHLLVADDKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQGNVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDYIDSKVLSIRPNMCQETSGMLTYKTT--VPTMCHTSTIQTIPPYGIEFGNKLSSRQPTIKTLSRQNDMKSTLQPRQRKKVASWKAHCGS 213
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A1S8X7H2 (LIM domain protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_01474 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.942e-48 Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745 CS C++PIRE ++L+ D K +HEDCLRC+CCD RLAELDK CYMKA M LC+RDYLRLYG TG+C C +I FE+VMR + N+YHL+CF C C++RFC+GDKFYL + ILCE+D+ Sbjct: 9 CSKCEQPIREAHLLVADDKYWHEDCLRCACCDVRLAELDKVCYMKARMPLCRRDYLRLYGKTGICVVCLKRILGFEFVMRIQENVYHLNCFCCQRCQLRFCIGDKFYL-QNKTILCEQDY 127
BLAST of Lim domain only 1 vs. TrEMBL
Match: A0A1Z5LG36 (Rhombotin (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 4.593e-48 Identity = 82/166 (49.40%), Postives = 105/166 (63.25%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAAN--SFLSVNNHHNALNPL 877 C+ CQ+PIRE ++L +++HEDCL+C+CCD RL E+ + KAN++LCKRDYLRL+G TGLCSAC I AFE VMRA+ N+YHL+CF C C RFCVGD+FYLHE N+ILCE D+ S +P AA+ SV H+ PL Sbjct: 43 CAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKPIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHE-NRILCEYDYEERALMAGVPPPFFSAPHGVPPGPGNAASVIPLTSVKRQHSMEEPL 207
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888]) HSP 1 Score: 152.14 bits (383), Expect = 7.662e-44 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 89 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 217
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888]) HSP 1 Score: 149.828 bits (377), Expect = 9.622e-44 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 152
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo1 (LIM domain only 1 [Source:NCBI gene;Acc:280646]) HSP 1 Score: 150.214 bits (378), Expect = 1.028e-43 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 34 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 156
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:103033888]) HSP 1 Score: 149.443 bits (376), Expect = 1.029e-43 Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHS 775 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ L + ++ Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYEEGLMKEGYA 141
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Match: lmo4a (LIM domain transcription factor LMO4.1-like [Source:NCBI gene;Acc:103024382]) HSP 1 Score: 123.635 bits (309), Expect = 1.920e-33 Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSI 820 +C+ C I + ++L ++ +H CL+CSCC A+L E+ CY K M+LC+ DY+RL+G++G CSAC I A E VMRA+ N+YHL CFTC C+ R GD+F+ + I CE D +H + NS ++P + Sbjct: 35 SCAGCGGRISDRFLLFSMERYWHTRCLKCSCCQAQLGEIGTTCYSKGGMILCRTDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNRLMPGDRFH-YVNGTIFCEHDRPGGALLSSH-LTPLQNSTLLPDQKV 178
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332]) HSP 1 Score: 120.168 bits (300), Expect = 3.744e-33 Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 C C++PI + Y+L ++ +HEDCL C C RL E+ + Y K LC+RDYLRL+G G C++C +I+AFE MR ++ +YHL+CF C C+ FCVGD++ L ++ I+CE+D Sbjct: 30 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSD-IICEQD 147
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo2 (LIM domain only 2 (rhombotin-like 1) [Source:NCBI gene;Acc:30332]) HSP 1 Score: 118.627 bits (296), Expect = 1.341e-32 Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 C C++PI + Y+L ++ +HEDCL C C RL E+ + Y K LC+RDYLRL+G G C++C +I+AFE MR ++ +YHL+CF C C+ FCVGD++ L ++ I+CE+D Sbjct: 29 CGGCRQPISDRYLLKAIEQFWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGHCASCGKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLVNSD-IICEQD 146
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: lmo4b (LIM domain only 4b [Source:ZFIN;Acc:ZDB-GENE-030131-3570]) HSP 1 Score: 109.383 bits (272), Expect = 6.098e-29 Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 2 Query: 350 LNSEC----RSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKD 742 +NS+C + C+ C I + ++L +H CL+CSCC A+L +L CY + M+LC+ DY+R++G++G C+AC I A E VM+ + N+YHL CF C C+ R GD+F+ + + CE D Sbjct: 2 VNSQCPEPQATGPPKRCAGCGGKIADRFLLYSMDCYWHSRCLKCSCCQAQLGDLGTSCYTRQGMILCRDDYIRMFGSSGACNACGQSIPASELVMKTQGNVYHLKCFACATCRTRLVPGDRFH-YVNGSLFCEHD 135
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002189.1 (pep scaffold:Pmarinus_7.0:GL483992:1961:4872:1 gene:ENSPMAG00000001979.1 transcript:ENSPMAT00000002189.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 57.7658 bits (138), Expect = 8.032e-10 Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 2 Query: 554 RLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 RL+G C+ C+ ++VMRA+++IYH++CF C C + GD+F L + +LC D + Sbjct: 1 RLFGIK--CAKCNASFSKTDFVMRARSHIYHMECFRCETCSRQLLPGDEFALRDGGGLLCRADQH 63
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006267.1 (pep scaffold:Pmarinus_7.0:GL478686:5064:37345:-1 gene:ENSPMAG00000005668.1 transcript:ENSPMAT00000006267.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.447 bits (119), Expect = 1.721e-7 Identity = 41/149 (27.52%), Postives = 64/149 (42.95%), Query Frame = 2 Query: 422 ILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIV----NNSNSWIIPTNSIKAANSFLSVNNH 856 +L V+ + +H C C C LA+ F +K +C DY RLYG C AC ++ V+ A YH CF C +C+ F G + + + LC + C+Q S V +N ++ IK + L++ H Sbjct: 36 VLRVENRHFHVSCFTCKVCGCDLAQCGFF--VKNGEYVCTLDYQRLYGTR--CQACGDFVEG--EVVTALGRTYHPRCFVCSVCRQPFPSGARVTFN-GRECLCHE------CTQPISPVLRDPSNPSNCAGCGRDIKNGQALLALERH 171
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO48809 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIH4]) HSP 1 Score: 142.124 bits (357), Expect = 2.622e-41 Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757 K TC C I E ++L + +HEDCL+CSCC+ RL E+ Y KAN++LCKRDYLRL+G G CS C I AFE VMRA++N+YHL+CF+C C RFCVGDKFYL N+ILC D+ ++ Sbjct: 17 KRTCGGCGVLINERFLLKALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYLRLFGTRGFCSVCCKTIPAFEMVMRARDNVYHLECFSCQRCNQRFCVGDKFYLF-NNRILCVDDYEEMM 142
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO37872 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SEJ4]) HSP 1 Score: 124.79 bits (312), Expect = 5.330e-35 Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH 745 C+ C I+ ++L + +HE+CL+CS C L+E+ Y + +++LCKRDY+R++G TG+CS C I E VMRA+ ++YHLDCF C +C+ RFCVGDKFYLH+ N +LCE D+ Sbjct: 2 CAQCGNGIQSQFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFGTTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQ-NTVLCEDDY 120
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO37316 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG43]) HSP 1 Score: 114.39 bits (285), Expect = 1.059e-30 Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTH 772 C+ C I + ++L+ + +H +CL+CSCC+ARL E+ CY K M+LCK DY+RLYGN+G C+ C I A E VM+ +YHL CFTC C + GD+F++ ++ CE D +L Q H Sbjct: 18 VCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHV-VNGRLFCENDDPNLLKQQLH 146
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: EDO46073 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR95]) HSP 1 Score: 91.6633 bits (226), Expect = 7.702e-21 Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKM-YHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNII 754 C C I + YIL V + +H CL+C+ C L E C+++ CKRDY+RL+G C+ C L ++VMRA+N IYH+DCF C C + GD+F L E + + C+ DH I+ Sbjct: 17 CVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDE-KCTCFVREGKTYCKRDYVRLFGTK--CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALRE-DGLFCKADHEIV 136
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Match: LHX1 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9E9]) HSP 1 Score: 85.1149 bits (209), Expect = 2.163e-19 Identity = 59/211 (27.96%), Postives = 92/211 (43.60%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWI-IPTNSIKAANSFLSVNNHHNALNPLIE-KNKNVSNIISSWLPTEQKSGNLK----NHTNSGIQTITTMHQN 1000 C+ CQ PI + ++L V ++H C++CS C L E C+ + + CK D+ R YG CS CD I + V RAK+ ++H+DCF C CK + GD+ Y +C D+ HS N + I P + + L P K K + + S++ T + S N++ T ++ I QN Sbjct: 5 CAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTER---CFSREGKLFCKTDFYRRYGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDELYYIGDGSFICRDDY-------YHSHPTNLDDAIDEPKDLSYGLDEDLDAALASKRRGPRTTIKAKQLEALKSTFAATPKPSRNIREKLAQETGLNMRVIQVWFQN 203
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo1 (rhombotin-1 [Source:NCBI gene;Acc:101162198]) HSP 1 Score: 150.214 bits (378), Expect = 6.122e-44 Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 377 KNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 + C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 20 QKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQMDYE 142
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo3 (LIM domain only 3 [Source:NCBI gene;Acc:101154994]) HSP 1 Score: 149.443 bits (376), Expect = 1.041e-43 Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 C+ C R I++ Y+L K +HEDCL+C+CCD RL E+ Y KAN++LC+RDYLRL+G TG C+AC I AFE VMRAK+N+YHLDCF C LC RFCVGDKF+L + N ILC+ D+ Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFL-KNNMILCQTDYE 143
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: ENSORLT00000030604.1 (rhombotin-1 [Source:NCBI gene;Acc:101174827]) HSP 1 Score: 139.813 bits (351), Expect = 6.278e-40 Identity = 63/121 (52.07%), Postives = 87/121 (71.90%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHN 748 C+ C I + ++L + +HEDCL+C+CCD RL + Y ++N++LC+RDYLRL+G TG C+AC I AFE VMRA++N+YHLDCF C LC+ RFCVGDKF+L + N ILC+ D+ Sbjct: 23 CAGCNGKILDRFMLQALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFCVGDKFFL-KNNMILCQLDYE 142
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo4b (LIM domain only 4 [Source:NCBI gene;Acc:101173927]) HSP 1 Score: 122.865 bits (307), Expect = 1.912e-33 Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757 C+ C I + ++L +H CL+CSCC A+L E+ CY K+ M+LC+ DY+RL+GN+G CSAC I A E VMRA+ N+YHL CFTC C+ R GD+F+ + + CE D L Sbjct: 23 CAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
BLAST of Lim domain only 1 vs. Ensembl Medaka
Match: lmo4b (LIM domain only 4 [Source:NCBI gene;Acc:101173927]) HSP 1 Score: 122.865 bits (307), Expect = 1.912e-33 Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIIL 757 C+ C I + ++L +H CL+CSCC A+L E+ CY K+ M+LC+ DY+RL+GN+G CSAC I A E VMRA+ N+YHL CFTC C+ R GD+F+ + + CE D L Sbjct: 23 CAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTAL 145
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000028893.1 (SMESG000028893.1) HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0 Identity = 251/252 (99.60%), Postives = 251/252 (99.60%), Query Frame = 2 Query: 326 ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISGAV 1081 ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISG V Sbjct: 13 ICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNIILCSQTHSIVNNSNSWIIPTNSIKAANSFLSVNNHHNALNPLIEKNKNVSNIISSWLPTEQKSGNLKNHTNSGIQTITTMHQNCDSQISPNKFEDVSSGYDSPSPISGTV 264
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000037556.1 (SMESG000037556.1) HSP 1 Score: 120.553 bits (301), Expect = 1.014e-32 Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDH-NIILCSQTHSIVNNSNSWII 805 C+ CQ I E ++L VD + +HEDCLRC+CC+ RL E+ Y +A+++LCKRDYLR++G+ G C+ACD I AFE VMRA + +YHL+CF C C RFCVGDK YL+ N+ILCE D+ I+L ++ S + + S++ Sbjct: 14 CTSCQEVIAESHLLKVDNQYWHEDCLRCNCCNCRLGEVGSSLYARADLLLCKRDYLRMFGSIGYCNACDKVIPAFELVMRAGSFVYHLECFGCQECNHRFCVGDKCYLY-GNRILCEADYEEIMLYNKIASQIPLTGSFVF 153
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000071273.1 (SMESG000071273.1) HSP 1 Score: 94.7449 bits (234), Expect = 3.290e-21 Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 2 Query: 386 CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKILCEKDHNI 751 C C+ PI + +L V +H CL C+ C L +DK CY K++ + CK D+ R YG C+ACD I A E + +A+NNIYHL+CF C C + G++F+L + K++C D I Sbjct: 46 CIACKGPILDRVVLKVGLSTWHVRCLHCTDCGIPL--IDK-CYSKSDEIFCKEDFFRRYGTR--CAACDEVIPASEVIRKAQNNIYHLECFACISCHRQLNTGEEFFLLSSRKLMCRPDFEI 162
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000005304.1 (SMESG000005304.1) HSP 1 Score: 73.559 bits (179), Expect = 4.905e-14 Identity = 42/123 (34.15%), Postives = 62/123 (50.41%), Query Frame = 2 Query: 383 TCSICQRPIREMYILIVDQKMYHEDCLRCSCCDARLAELDKFCYM-KANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYLHETNKIL-CEKDH 745 +C+ C I + Y+ ++ +H+ C CS C+ L E C+M K N + C+ Y + T CS C+L +Q E M A N +YH+ CF C CK GD+F LH +L C D+ Sbjct: 33 SCTGCNGVINDKYLFSLNDTFWHKSCALCSICEEVLEES---CFMLKDNKLFCRNHYYKSSFATK-CSGCNLPMQTHEVAMHALNRVYHVTCFACSCCKQLLQRGDEFILHGPESLLVCRADY 151
BLAST of Lim domain only 1 vs. Planmine SMEST
Match: SMESG000010916.1 (SMESG000010916.1) HSP 1 Score: 73.1738 bits (178), Expect = 5.141e-14 Identity = 45/128 (35.16%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 341 NENLNSECRSDIKNT----CSICQRPIREMYILIVDQKMYHEDCLRCSCCDARL-AELDKFCYMKANMMLCKRDYLRLYGNTGLCSACDLKIQAFEYVMRAKNNIYHLDCFTCHLCKMRFCVGDKFYL 709 E++N +DI N C+ C+ I + + L KM+H +CLRC C L +E+ C+ + ++ CK DY RL+G C C +KI E VMR KN ++H+ CF C C G+ F L Sbjct: 12 GESINQSNSTDIYNQNSMNCAGCKSKITDRFFLKAADKMWHVNCLRCWICHVELHSEMS--CFTRDGVVYCKEDYSRLFGRK-CCIRCGVKITYDELVMRVKNLVFHVTCFCCVQCGRMLNPGEYFGL 136 The following BLAST results are available for this feature:
BLAST of Lim domain only 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Lim domain only 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Lim domain only 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Lim domain only 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Lim domain only 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Lim domain only 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022926 ID=SMED30022926|Name=Lim domain only 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1136bpback to top protein sequence of SMED30022926-orf-1 >SMED30022926-orf-1 ID=SMED30022926-orf-1|Name=SMED30022926-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp MSKNSLISNKNNICLKPNENLNSECRSDIKNTCSICQRPIREMYILIVDQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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