Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022861 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX649434.3 (pep chromosome:GRCz11:3:18270043:18274691:-1 gene:ENSDARG00000105157.2 transcript:ENSDART00000161140.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX649434.3) HSP 1 Score: 102.449 bits (254), Expect = 5.974e-21 Identity = 104/376 (27.66%), Postives = 193/376 (51.33%), Query Frame = 3 Query: 4278 NAIF--NFSK---RSSVILNLEPFTNDEVMLELKKADN-TSPGIDGIQ---YRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSR-YSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI--GKSPVKILAYADDIALVACSVSELQK----ITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD--TDQNPYEILQKVVS 5351 N++F N SK S+ +L L P + DE+ + +N SPGIDGI Y+ +L G+ L L+ N ++ ++P S + + ++T P K D + +WRP++LL YK+ + LA RL++ +D +++ Q + ++ ++ ALE ++ + N + LD + AF V HEY+ +L+ G S F +I+++YSN + + + +GV+QGC +S +L+S+AI P+L + R++ + F I + V++ AYADD+ + + ++++ I + ++A++ + EK L + + D + ++ KR F +YLGV +G QN +L+K+ S Sbjct: 460 NSVFFENLSKVDDESNAMLEL-PISQDELYTVMMSMENGKSPGIDGIPVDFYK--VLWPVIGEDLFLVLNDSLNKGSLPLSCR--RAVITLLPKKGD-LQKIGNWRPVSLLCSDYKILSRALAVRLSKVLD--QIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGIN--CGLISLDQEKAFDRVEHEYLKKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAPFDVQRGVRQGCAMSGMLYSIAIEPLLHRI-RAELKGFSIPHCNTQVQLSAYADDVIVFITNTDDVRRLECIINNFKKISSAKVNW----EKSEALLIGDWKRDPPLLPGGLKWKR----GFLKYLGVYLGESDFVQQNWNGLLEKIQS 816
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX547930.4 (pep chromosome:GRCz11:20:12830448:12834749:1 gene:ENSDARG00000098779.2 transcript:ENSDART00000164754.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX547930.4) HSP 1 Score: 102.449 bits (254), Expect = 6.072e-21 Identity = 82/279 (29.39%), Postives = 143/279 (51.25%), Query Frame = 3 Query: 4329 PFTNDEVMLELKKADN-TSPGIDG--IQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRS----DCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIA 5141 P T +E+ L+ N +PG+DG +++ LL +L N + S +P S + + +LT P K D +V +WRP+ALL YK+ + LA+RL + +++HI Q + V++ S++ +E S+ K + + LD + AF V H+++W+ G F +I++LYS+ + G + P I +G++QGC +S +L+S+A+ P+L + R C PVK+ AYADDI ++ +++ K+ DI Sbjct: 470 PLTTEELFKALQSMKNGKAPGLDGLPVEFYKAYWFFLGEDLLEVLSNSL-SKGKLPVSCR--RAVLTLLPKKGD-LKEVKNWRPVALLCTDYKILSKALANRLRE--VMGQVIHIDQSYCVPNRSIVDNISLIRDVIEVSKIFGLK-VGLLTLDQEKAFDRVEHQFLWNTFEAFGFPIVFIDMIKVLYSDIGSILKINGGLSVP-FKINRGIRQGCALSGMLYSIALEPLLNKIRRELEGFKCENLF---PPVKLSAYADDIMVLFNGQNDINKLVDIV 737
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CABZ01033394.1 (pep chromosome:GRCz11:13:6032844:6038477:-1 gene:ENSDARG00000101795.2 transcript:ENSDART00000166130.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01033394.1) HSP 1 Score: 99.7525 bits (247), Expect = 3.332e-20 Identity = 117/478 (24.48%), Postives = 210/478 (43.93%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKKAD-NTSPGIDGIQYRDXXXXXXXXXX-XXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPV--KILAYADDIALVACSVSELQK----ITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQ--NPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREI----------KTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARK 5699 P + E++ LK +PGIDG+ + + N+ +++ ++P S + + ++T P K D ++ +WRP++LL +K+ + LA+RL I ++H Q +++ S++ L+ S Y N L + +D + AF V H+Y+W+ L G GF +I++LY + + + I +G++QGC +S +L+SLAI P+L + RS FM+ V ++ AYADD+ + ++ I++ +AA + + K L + T I + K+ +YLGV +G T Q N I++K+ KLK ++ ++H +L F R I + + P+G + + + ++L N F + SE+ Y E GG V L+ + T + RLLT D + Sbjct: 476 RPLSELELLTALKAMQPGKAPGIDGLPIEFYKIFWDVLGEDFLAVLNESLTEGSLPLSCR--RAVVTLLPKKGD-LQEIKNWRPVSLLCSDFKILSKTLANRLKNVI--GHIIHPDQTYCVPGRSIMDNISLVRDILDLSSY-FNLDLGLISIDQEKAFDRVEHQYLWNTLEAFGFGSGFIGMIKVLYQDIESVLKINGGLSAPFKINRGIRQGCALSGMLYSLAIEPMLRKL-RSRIEGFMLANKSVQHQLSAYADDVIVFVNGQKDVNTLVSIISEFDKLSAARVNW----GKSDALINGKWNNGTPILPGGLIWKK----GGLKYLGVYLGESTMQQKNWDGIIEKIEG--------------KLKKWR-WIHPQLSFRGRVLIINNLIASTLWHRLFCTEPPSG---LLLFLQAKLVNFFWDRMHWVPQSEL---YLPLEEGGQGLVSLVSRHATFRLQFVQRLLTGPVDLVWR 917
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU462878.3 (pep chromosome:GRCz11:17:8542203:8545189:1 gene:ENSDARG00000103562.2 transcript:ENSDART00000158873.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU462878.3) HSP 1 Score: 99.3673 bits (246), Expect = 3.565e-20 Identity = 94/344 (27.33%), Postives = 167/344 (48.55%), Query Frame = 3 Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLY-SNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRS-DCRPFMIGKSPVKILAYADDIAL-VACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL---PNVDMDTVISI--NDIRIKRLESNEFYRYLGVPVGMDT----DQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450 +N ++ IP SW+ + PK K+ ++ SS+RPI++L+V YK+FAS L+ RL + ++EL+ + Q G ++ ++ + H + ++ LD + AF SV +Y++ +L G + F I+ LY S + GH+ + I + +G +QGCP+S LF+L I P+ +A+ + + +I K KI YADD+ L +A S + K+ + G++ +K L PN++M + N I +K YLG+ + D D N I +++ SD L +++A K+ V RL++ F++ Sbjct: 310 FNYVLRGGEIPQSWQEAVISIIPKQGKDK--NECSSYRPISVLNVDYKLFASILSKRLE--VVISELVDLDQTGFIQNRQTQDNLRRTLQIMSHITTENISAMLLS-LDAEKAFDSVGWDYLYQVLARFGFNNKFIECIKGLYLSPKAKIKINGHL-SKTIYLERGTRQGCPLSPTLFALFIEPLAQAIREEPEIKGIVIKKEEHKICMYADDVLLFLANPKSSIPKLMSLLNTINFYSGYKINIQKTQTLTYNFRPNLEMKKQYNFKWNSISLK---------YLGINLTKDLSTLFDSNYGPIYKEIKSDIAKWTLLPLDMSSRIEAIKMNVVPRLLYLFQS 638
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkeyp-88h4.2 (si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-105]) HSP 1 Score: 98.9821 bits (245), Expect = 3.730e-20 Identity = 75/265 (28.30%), Postives = 125/265 (47.17%), Query Frame = 3 Query: 4515 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPV-LEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPV 5300 L PKPDK+ D +WRPI LL+ YK+ AS A RL R L+ +++ Q G +H C N+ L L + + I +LD AF +V HE++ L+ G F V+QMLY + ++ +P P+++G++QGCP+S LF + + ++ + ++ I ++I ADD L ++ + I A + G + KC + L DT+ D +I+ + E +YLG+ + Sbjct: 55 LIPKPDKDPTIID--NWRPITLLNFDYKLLASIFAKRLKR--HLHYIINETQTGFIKGRHISC---NTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGCPLSPFLFLFVVETLSIDILHNNNLVGINIFNREIRISQLADDTTLFLKDKDQVSPVLTIINAFSDASGLKLNLLKCEIICL----YDTL----DAKIENIPIKEEVKYLGINI 304
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 [Source:Xenbase;Acc:XB-GENE-984439]) HSP 1 Score: 103.219 bits (256), Expect = 8.966e-22 Identity = 68/210 (32.38%), Postives = 105/210 (50.00%), Query Frame = 3 Query: 4551 DVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSA------ALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS-PVKILAYADDIALVACSVSELQKITDIAVATAAE 5159 DV +WRPIALL+ K+ A L SRL +L G + V+ SI A LE + +++ + LD AF V H+Y+W+ LR G+ + F + +LY +F + N + GV+QGCP+S +L+ AI+P L AV D F + P+K++AYADD+ +V E+ +TD A+ + +E Sbjct: 236 DVKNWRPIALLNTDRKLLAKVLFSRL--------ILFSGTLLSREQFCTVKGRSIFGALLSIREVLETCKAQSSRRYVVG-LDQAKAFDRVDHQYLWATLRKYGIPDQFVEWLTVLYREGESFPLVNGWRGENFGVEAGVRQGCPLSPLLYVFAIDPFLRAVQALDLEGFRAPRCLPLKLVAYADDVTVVVSHPEEVNLLTD-AIESYSE 435
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000024583.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:942889:946017:1 gene:ENSXETG00000015161.1 transcript:ENSXETT00000024583.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 95.9005 bits (237), Expect = 5.790e-19 Identity = 62/203 (30.54%), Postives = 100/203 (49.26%), Query Frame = 3 Query: 4548 DDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAW------LDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI-GKSPVKILAYADDIALVACSVSELQKITD 5135 + + +WRPIALL+ K+ A L SRL +L G S V+ SI A L R + A W LD AF +V H+Y+W++L G+ F I++LY +F Q + + GV+QGCP+S +L+ A++P L + R + G P++ +AYADD++++ +E++ +TD Sbjct: 280 ERIENWRPIALLNSDRKILAKILFSRL--------ILFSGTLLSSCQFCTVKGRSIFGAILT-IREALESCKAHGWGKYLLSLDQTKAFDNVNHDYLWAVLSKYGIPGRFISWIKVLYEGAKSFPLINGWQGEDFEVGAGVRQGCPLSPLLYVFALDPFLRMLERKGLEGVCVPGGQPLRFVAYADDVSVIVSKQAEVEVVTD 473
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 95.9005 bits (237), Expect = 7.164e-19 Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = 3 Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDC-RPFMIGKSPVKILAYADD 5087 Y + IS +P+S +L PKP K+ + S+RPI+LL+ K++A LA RL R I L++ Q G +K L+ +L S AIA LDI AF +V Y+W +L+ +G F ++Q+LY + + T N + +G +QGCP+S +LF+LAI P +AV + + + + + KI YADD Sbjct: 492 YGEAISTGILPESMYEAAIILLPKPGKDPQL--CESFRPISLLTTDVKIYAKILARRLARVI--KTLVNPDQIGFIPTKTTALNTRRLYLNLSLTPSNTGNR---AIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIQGYELKGTIEKIQLYADD 698
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: sulf1 (sulfatase 1 [Source:Xenbase;Acc:XB-GENE-966419]) HSP 1 Score: 94.7449 bits (234), Expect = 1.375e-18 Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 3 Query: 4341 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 5255 DEVM L LKK SPG DG+ ++RD+L +N +++ +P S + +L K + + + +WRPIALL+V K+ A L +RL + L+ H KG S + + ALE R +A LD AF + H+Y+W LLR G+ F +++LY +F + + GV+QGCP+S +L+ AI+P + + P GK+ +++ AYADD+ +V S E + I + G KC + P D+ V + RIK Sbjct: 500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000037748.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460430.1:277026:279596:-1 gene:ENSXETG00000014464.1 transcript:ENSXETT00000037748.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 94.3597 bits (233), Expect = 1.612e-18 Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 3 Query: 4341 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 5255 DEVM L LKK SPG DG+ ++RD+L +N +++ +P S + +L K + + + +WRPIALL+V K+ A L +RL + L+ H KG S + + ALE R +A LD AF + H+Y+W LLR G+ F +++LY +F + + GV+QGCP+S +L+ AI+P + + P GK+ +++ AYADD+ +V S E + I + G KC + P D+ V + RIK Sbjct: 500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 4.303e-25 Identity = 119/447 (26.62%), Postives = 199/447 (44.52%), Query Frame = 3 Query: 4296 SKRSSVILNL-EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL-PN-------VDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQ-LRNSFRKMLLLPKHSEVCYFYSSTENGG 5606 S+ I NL P +NDE+ E++ T+ G DG+ + + + L+N I+ P + +T+L PK E D + +RP+++ SV + F LA+R I + LL Q+ DG E+ S+LSA ++ +R K L IA LD+K AF SV H + LR + I +Y N+ T + I +GV+QG P+S +LF+ ++ VL + + F++G + L +ADD+ L+A + LQ A E G E P KC L L P+ V+ ++ + I +L + ++YLGV + P ++ + D + + + L Q++ +F+ R I L + SN V + +R + R L LP + + YF++ + GG Sbjct: 306 SRMQGEIKNLWRPISNDEIK-EVEACKRTAAGPDGM---TTTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPK---EPGTMDPACFRPLSIASVALRHFHRILANR----IGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKI-KGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENT--GFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGV---VYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKL--------VLGR---TSNADVRKGDKIIRKTVRGWLRLPHDTPIGYFHAPIKEGG 724
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.096e-17 Identity = 110/452 (24.34%), Postives = 194/452 (42.92%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFA-YVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYAD--------------DIALVA----CSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDL 5624 P +E+ +K ++PG DG+ + + + L + +P W +T L PK + ++ S+WRPI + S + ++ LA RL ++L H QKG ++ DG + NS+L SR K + LD++ AF +V H + L+ +G+ EG + Y+ L +T+T QT I I +GVKQG P+S LF+ ++ +L ++ + IG+ + +LA+AD +A VA L ++++ AA G P +L++ NV ++ + D R+++ +RYLG G+ P + + K + + L QKL + V +L+ Y L P+ + + +R + ++ L L H+ FY+ +GG DL Sbjct: 4 RPIAREEIQCAIKGWKPSAPGSDGLTVQAITRTRLPRNFVQLHLLR----GHVPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVEL----HPAQKGYARIDGTLV-NSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIPVLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKSVSISVAASGGVCI-PRTKPFLRVDNV----LLPVTD----RMQT---FRYLGHFFGLSGAAKP--TVYNLSRWLKCVEAAPLKPEQKLSLIREHVVPKLL----------YGLQNPSVTARTLRDADKLIRTTVKRCLHLHLHTPNQCFYARVRDGGLGLTDL 419
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P16423|POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.406e-16 Identity = 82/314 (26.11%), Postives = 142/314 (45.22%), Query Frame = 3 Query: 4374 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC---GYLQLPNVDMDTVIS----INDIRIKRLESNEFYRYLGV 5294 ++SPG DGI + + L N I+ +P S + +T+ PK + D +RPI++ SV+ + + LA+RL I+ + Q+G DGC ++ +I+ L HS + + IA LD+ AF S+ H ++ LR G +GF +Q Y T + + +GVKQG P+S ILF+L ++ +L + +G + A+ADD+ L A + LQ + D + + +G + +KC G P + + + I L+ + ++YLG+ Sbjct: 357 SSSPGPDGITPKSAREVPSGIMLRI--MNLILWCGNLPHSIRLARTVFIPKTVTAKRPQD---FRPISVPSVLVRQLNAILATRLNSSINWDPR----QRGFLPTDGCADNATIVDLVLRHS-HKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIG--AKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGI 658
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.281e-14 Identity = 85/313 (27.16%), Postives = 146/313 (46.65%), Query Frame = 3 Query: 4275 WNAIFNFSKRSSVILNLEPFTNDEVMLELK-KADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDK----TIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQK----GGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKIL--AYADDIALVACSVSELQKITDI----AVATAAEIGF 5168 W+ + S+R L P T DE+ L+ N SPG+DG+ + L +++++++ +P S + + +L+ P K D + +WRP++LLS YK+ A ++ RL L E++H Q G + D N L L H T LA LD + AF V H+Y+ L+ F ++ +Y++ T + +GV+QGCP+S L+SLAI P L + R ++ + ++++ AYADD+ LVA + +L++ + A A++A I + Sbjct: 431 WDGLPVVSERRKERLE-TPITLDELSQALRLMPHNKSPGLDGL---TIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCR--RAVLSLLPKKGD-LRLIKNWRPVSLLSTDYKIVAKAISLRLKS--VLAEVIHPDQSYTVPGRTIFD-----NVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFL-CLLRKRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQEVYAAASSARINW 728
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03279|PO21_BRACO (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Bradysia coprophila OX=38358 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.299e-14 Identity = 137/550 (24.91%), Postives = 217/550 (39.45%), Query Frame = 3 Query: 4032 NEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINK-------GILIANFMTDMKSTVNKILNNID------VSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKA---DNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGG 5606 I+ + +FPD K K Y +K H NK ++ + + D+ + +L+ D +R F F G +A N + R+ ++E + ++E+K A + G DG+ R LD K L YN + +P K +T+ TPK + D +RP+++ SVI + F LA R +E Q DG + S+L+A + ++ K L IA LD+ AF SV H + + G G I +Y+N T G + + I+ GV QG P+S LF+LA L A++ F I V AY+DD L+A +V LQ D T A+IG K + L + + I R +K L ++ ++YLGV + T P + D L L Q++ K FV P + + LS+ +++ +R R+ L LP V + Y+ + GG Sbjct: 50 GRIMSWLSDRFPDTQKPKGPIY--SKTTIYHGTNKQKRKQRYALVQSLYKKDISAAARVVLDENDKIATKIPPVRHMFDYWKDVFAT-----GGGSAATNIN-RAPPAPHMETLWDPVSLIEIKSARASNEKGAGPDGVTPRSWNALDDRYKRLL--YNIFVFYGRVPSPIKGSRTVFTPKIEGGP---DPGVFRPLSICSVILREFNKILARRFVSCYTYDER----QTAYLPIDGVCINVSMLTAIIAEAK-RLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELAS--ILAGVYQGDPLSGPLFTLAYEKALRALNNEG--RFDIADVRVNASAYSDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLGV---VYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFV-----IP---KHLNRLVLSRTTATGLCKMDLL--IRKYVRRWLRLPGDVPVAFLYAPVKAGG 564
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2VFZ4 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Araneus ventricosus OX=182803 GN=pol_2507 PE=4 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 7.795e-83 Identity = 270/864 (31.25%), Postives = 399/864 (46.18%), Query Frame = 3 Query: 4158 MTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 6722 +T + KI +N+ + P F+K+ S +S + G S+ S IL L PFT EV +LK A+NTS G D + Y ++ L ++N I + IP SWK T+L PK + ++WRPIAL S IYK+F CLA+RLT WI+ E+L QKG + DG +EHN +L+ ALE +R K L +A+LDI +AFGS+PH ++ L GV F +I +Y+ +ST T NI I+ GVKQGCPIS ILF + I+PV+ + S S +ILA+ADDI L+A S ELQ + D + + P KC L P D+ IN R+ L+ EF+++LG P+G + N Y+ L + K + +S L W ++ A K F++ FP RT + + I LR S ++ L LP + Y Y + G L +E I F+LLTSK + + I+ + LK R+ K E L+ + F RIA + Q D HE ++ I + V+ T + + LC E C + AS+ +F GD + FA + F AR + LS+ +P+ K CR C+ + ET+ HVL CK + RHD + L+ K +I L +R D++ K IF++D+ P + +FE K L+KYE+L + T FK + ++GALGS+ K + LLK+ + RS LK + C S++ Q +R + H TG Sbjct: 1076 ITGQEGDFCKIPSNV---LHPYFEKVWS----RSDYDGG--VFVPTSEVRSPILEL-PFTVQEVAKKLKDAENTSAGPDRLTYFHWKSVEGAASFLCNVFNACIHFRKIPPSWKNSTTILLPKSGDPNL---PANWRPIALSSTIYKLFTKCLAARLTNWIEKFEVLSPCQKGFTPFDGVIEHNYVLNRALEDAR-KKRKDLCVAFLDISNAFGSLPHSAIFDGLTACGVGPAFVDIIMDIYTGSSTKVLSESGATENINILSGVKQGCPISGILFDICIDPVIREIQGS--------HSGHRILAFADDICLLAPSAIELQVMLDRINQLFESLNLKLNPAKCVSFHLSGIKPAGVRDSAFYINGTRLVSLKDGEFHKFLGKPIGFNPCPN-YKSLNDLYQAAKAVMESGLSQWMRIDALKSFIYPAFQFPMRTSQFAKKHWHE----------IDRALRKSIKQTLSLPDRASNDYLYGHRKYGSFAIPILAEECELNRIDTAFKLLTSKDEVIKAISLEHLKATVRARMQ-KSSVSDEDLEAYMSATFSDNDNAFSNEFTCARIASARLKVHWQFDEGVPKLKHE-NISINASERKKVLFALRDHFRTGRSNRLLLCPKQGKAME--CVAKSRAST--------HFLFNGDYTSFAVYRFFSSARLDLLSLRGNQPWKKNVDMSCRGCDECDLETLPHVLNHCKGRSRAWTLRHDCVCNRLVKALLPKGKIIARNQDVGPL----GKRPDIVFQ--MGKEIFIIDVTIPFENRYASFESARKAKLDKYEHLVEFYSTN--GFKASVVPILVGALGSWDPKNDKFLLKV-MSRSYLKKFQRLCC-SDVLQWSRDIFIEHVTG 1884
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2L367 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_39 PE=4 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 1.571e-82 Identity = 235/810 (29.01%), Postives = 383/810 (47.28%), Query Frame = 3 Query: 4329 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYL----QLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQ----TTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 6722 PFT EV ++L+ A NTSPG D I Y D + K L ++N + + IP SWKT T+L PK + ++ WRPIAL S +YK+F CLA+RL+ W + ++L QKG + HDG +EHN +L L+ +R + IAWLD+ +AFGS+PHE ++ +L G F +I+ +YSN+ST T +IPI+ GVKQGCPIS I+F + I+PV+ V + K+LA+ADD+ L+A S ELQ A+ +G P K L + P ++ I++ +I+ +E +F+++LG PVG + + Y+ L + L +S L WQ++ A K F L FP R + ++ I + +R + L LP+ + Y Y+S + G ++ I F+LLTSK ++ L RL P+ + D++ G+ + +F + + + I + ++ L + G + L S R+ + L + DS L + + G +++ S S + GD + F+ W F+H+ARTNTL +N KP++K CR C+ + ET++HVL CK RH++ + N L+ + ++ + P+ +R DL+ + ++++D+ CP + + F +EKY +L ++ K + ++GALGS+ K L K + +S L L + C I S + H TG Sbjct: 69 PFTVKEVKVKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPKSGDPNIPNN---WRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKTD-VCIAWLDVTNAFGSIPHEAIFEMLSRSGAGLPFTELIRDIYSNSSTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLALNPSKSVALYVSGRTPVGVRNSPFFIDNAQIRNIEEGDFHKFLGKPVGFNPCPD-YKYLSDLAIIATRLLESCLAPWQRIAALKTFFFPALQFPMRNAQFDKEKWAE----------IDAMIRPEIKNTLGLPERACNDYLYASRKVGAVGLPIAAEDADLHRIDTAFKLLTSKDPHVAELALAELLKTVKFRLRKPSPSDSDLGDFMTGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNTPRL-----LFGDLTLKSANRKKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASSHFMAN----GDYTRFSEWRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNSISDRVKNALLF--DGCTLISENQPIGPDG-QRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFESM--GLKATIIPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTG 831
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A183CIN3 (Reverse transcriptase domain-containing protein OS=Globodera pallida OX=36090 PE=4 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 6.005e-82 Identity = 244/814 (29.98%), Postives = 401/814 (49.26%), Query Frame = 3 Query: 4329 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSW-KTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMD---TVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKT----RFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNSEE-ETMSHVLQSCKVHLVLA-SERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKE--RVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 6722 PF+ EV LK+ NT+PG DGI+Y DP +L+ ++N K +P SW K+ LL K D+++ VS+WRPI+L I K+ +S LA+RL W N+ + QKG DGC EHN +L + ++ ++ + + ++AWLD+ +AFGS+PH+ +++ LR+ G+SE +I+ LY+++ T + TP I I GVKQGCP+S I+F+L + P++ A+ R + + S +LAYADD+ALVA S +ELQ++ D+ A G + KC L L D T S+ + L +FY +LGVP G Q+ ++L+++ + + + S L WQK A FV + F + ++ L+ + ++R+ +K L LP+ + V Y+S GG L + H +RL+TS+ D + ++ D LK V R+ + P + D+LNG + T + R+R A + + +I ++ + L + LR + + L L K + G + +++ N + G+ + FA W FIHRAR + + +NA + + G+KR CRRC+ + ET+ HVL C HL + RH+ L + P+ I V+ T VP E R DL+ D KK + ++D+ P + FER + +KYE L + F+V L+ I+G LG + +L ++ IG+ + L+++ +S+ + +R Y H TG Sbjct: 483 PFSPKEVWERLKRCSNTAPGPDGIRYAVWKKYDPGAHVLSAVFNVAQRLKHVPSSWNKSITVLLHKKGDRQE----VSNWRPISLSDTIGKLHSSVLANRLATWAIANDRISTSQKGFMPVDGCAEHNFVLQSIIQDAKRA-KRHCSVAWLDLTNAFGSIPHQTIFTALRWSGLSETSISIIRRLYASSYTQIRHSNGLTPEILIRAGVKQGCPLSPIIFNLGLEPIIRAI-RCQGVGYKLHGSQTSVLAYADDLALVAESAAELQRMLDVTSKVATWEGLSFNARKCATLDLNGKRKDALNTEFSVQNAHPPVLTIEQFYDHLGVPTGYGVAQSANKVLERMNNHVQKINTSLLAPWQKFDAVNTFVLPCIGFHLKNGVVQKTPLNA----------LDKKIRDFGKKWLNLPQRASVEPLYTSHAMGGMGLTPLNLLADISQLVHAYRLITSR-DLS-SLSMDLLKTVVYKRIR-QAPRPDQISDYLNGSMKGVFRQFESTDTPSAWTRLRQATARLSTKLRIGWKWSAVENRLLLQLNNEQLNPKTAEYCLRAAIREFYRLRL----LAKPDQGKVFAVTSAAT----ASNHFMQAGNFTRFADWRFIHRARLDCVPLNATRRFGHGDKR-CRRCHDGQLETLPHVLCHCWPHLGKGITRRHNAILDRLVKAFKPPPSTITRVNQT---VPGFNEAIRPDLLAVDEEKKTVLIIDVAMPFENRYEAFERCRQGKRQKYEALADHYRLQ--GFEVLLEAFIVGPLGGWDPHNEFVLNQLKIGQ-HYRRLMRKLMVSDAIRWSRDIYIEHITG 1262
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 2.428e-80 Identity = 241/825 (29.21%), Postives = 402/825 (48.73%), Query Frame = 3 Query: 4341 DEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTN--------KPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAV-SRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDT-VISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTRE------IKTYALSKPNGNSNISVNITSQLRNS-----FRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGK------------KTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCD----SYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRW 6704 D++ +K A ++ G+D I Y D+ L DP G++L ++ I+ + P K +T++ PKP K D Y D SSWRPI + S +Y++ L L WI LN++L QK K +GC +HN++L+ ++ R TN K L I +LD +AFGSVP + + + + G+ +I+ LY + T +CG + N+ + +GVKQGCP+SM+LF++ IN ++ A+ + D + +G ++ILAYADDIAL++ S +LQ++ A +G + P KC + +P+ T I +N IK + + Y+YLG + E+LQ ++ +TK++ +S+L QK+ AY+ F+HS+L F R I +K NSN S + + F LP +FY + + GG LDEY Q+I + FRLL S+ +N+ ++K L +K G +N +I + + +T + R+++A T I + + N L +T ++ V+L + K +H +L ++L++ + S ++ S+ ++NK I G + W FIHRAR L + LCR+C ++ETMSH L +C + L +ERHD + L +K V+ T ++ R D IT S + +LV++KCP D+ +FE + +KY + + ++ P +V L T I+G LGS+ + S+ L +G + E+ + + NI S +W Sbjct: 284 DQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGKSD-YSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSE---DPTLNS-AIKHDLISHLNLK------GFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLINGH--LVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLLPTKLFSVSN----LCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYV----NELRPD--ITMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQW 1085
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2WK27 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_22 PE=4 SV=1) HSP 1 Score: 293.893 bits (751), Expect = 7.130e-78 Identity = 248/849 (29.21%), Postives = 402/849 (47.35%), Query Frame = 3 Query: 4251 IKSPFRGNWNAIF-------NFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTV----ISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDL---LDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNG-----KDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLV---KWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEE-ETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 6722 I+ FR W+++ S+ S IL PF+ +E+ +L+ A+N+SPG D + Y L K +T +N + + +P SWK T+L PK +DK DD S+WRPIAL + +YK++ LA RL W L QKG + DG +EHN +L LE++R K L IAWLD+ +AFG++PH+ ++ L G E F VI+ LY++ +T + T +IP+ GVKQGCPIS +LF+L I+ +L + + S +ILA+ADD+ L+ S ELQ + D+ + +IG + P K TV + I+ + +F ++LG PVG + + Y K L S L WQKL A K F+ L F RT + K S+ + +R++ +++L LP+H+ Y Y T +G CV L +E + F+LLTS D ++ +L+ R+ ++ + ++ D+L+G +D P + + R+A +R +I+ F T ++ +S R+ + + D L K + G +A SP+ + I G + F+ + F+HRAR N L +N P+ +G + CRRCN + ET+ HV+ C+ H RHD I N I+ ++ +V + R D+++ +K I+++D+ CP + + FER + L KY L + + V++ ++GALG++ + L+KI + +S LK K C NI + + H TG Sbjct: 206 IEDHFRAAWDSVPLQLPHLDPTSEERSPILE-RPFSINEISKKLQNAENSSPGPDRLTYHHWRSLPQGHKFITAAFNACLFFQKVPPSWKRTTTVLIPK--TKDKLDDPSNWRPIALSNTLYKIYTKVLAGRLQDWSAKYGALSPCQKGFTPFDGVLEHNFVLQTRLEYARLR-KKNLCIAWLDVSNAFGALPHDQIYKALAAAGTGEKFLNVIRDLYTDCATKILTCNTATNSIPLKSGVKQGCPISGLLFNLGIDHILRRIQGN--------ASSHRILAFADDLCLLGDSPEELQDMLDVVLDEMTKIGLKLNPSKSFSFHFSGSTPVTVPPSSFRLGGETIQPILEYQFTKFLGKPVGFNPVPD-YSTFNTFGDCAKKLLASLLSPWQKLDALKSFLFPALQFVMRTGQFKKEDWSQ----------LDDAIRHAVKEVLFLPEHAANDYIYGHTRSG---CVGLPISAEESDLNRVDSAFKLLTSSDDMISELALQNLRSSVSARVR-RDASDEDLSDFLSGSLSIDEDDRPPSNPLSNIWTVARVA----SRRQKIEWMF------TEGMPQLKFQDLILKSSSRRKILFSIRNRLRQDRALALTSKPDQGKAMECVAQ----SPISSHFIANGLYTRFSEYRFVHRARLNLLPLNGLPWKEGPNKGCRRCNKADLETLPHVINHCEAHSRAWQLRHDGVQNRIVTAAQNSRAEIISINKK--VVKSHNLRPDIVLKLDNK--IYIIDVVCPFENRLEGFERAKQEKLRKYSVLIEHLLPQA--SAVEIVPIVVGALGAWDPANEKFLMKI-MSKSYLKTFSKLCVSDNIRWARDIYVEHITG 1006
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 126.716 bits (317), Expect = 1.491e-28 Identity = 122/460 (26.52%), Postives = 214/460 (46.52%), Query Frame = 3 Query: 4374 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC-GYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKI------LADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINT 5708 NT+PG D I + L DP G+ L LY + +P ++K +T L PK ++ ++V +WRPI + S+I ++F+ +A RL R +N Q+G GC E+ +L + H + ++ LA+ ++D AF S+ HE++ S L + + +IQ Y + T ++P+I + GVKQG +S ILF+LA++P+++++ + IG S V LA+ADD+ L++ S ++ + G + KC G+L T ++ND I +E +E +YLGV V NP+ + K ++++ + + L +QK+ F RLI+ ++K L+ +G +R + + L LP + YS ++GG + L + +RLL S+ + +I T Sbjct: 441 NTAPGPDRITRQMLSDWDPSGEKLERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLARACPINPR----QRGFISAPGCAENLKVLQGLIGHCKKERSQ-LAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQGDSMSPILFNLAMDPLIQSLENLGS-GYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGA---TSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKV------NPWVGITKPDLNSQLGEWVTRIGGAPLKPYQKVGLLNDFAIPRLIYLADHCDLKGVTLATLDGT----------IRRAVKGWLHLPLSTCGGLLYSRVQDGGLGILKLEALVPSIQARRLYRLLGSEDEIMNQIMT 875
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 103.219 bits (256), Expect = 2.244e-21 Identity = 70/236 (29.66%), Postives = 118/236 (50.00%), Query Frame = 3 Query: 4317 LNLEPFTNDEVMLELKKAD-NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIG-QKGG-SKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEA 5015 +++ P EV +K A ++PG +G+ YR K L L + IP W +L PK E + +RPI+LL+V K+F S +A RL ++ N L+ QK G + GC+EHNS++ ++ +R + K L + +LD+ +AFGSVPH +W F V E + +++ + + +S G T + G+ GC IS++ F++A+ ++ A Sbjct: 367 MDVNPPRWSEVQEVVKAAKAGSAPGPNGVPYRSYKSAPDVLKFLWKLMAIVWKKGIIPKEWHRAGGVLIPK---EKDSVAIDQFRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTAR-AEKKDLHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGCTISLLAFTMAMEVIIRA 598
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048385.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:135033:139457:1 gene:ENSAMXG00000032036.1 transcript:ENSAMXT00000048385.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 102.449 bits (254), Expect = 2.513e-21 Identity = 84/276 (30.43%), Postives = 140/276 (50.72%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKK-ADNTSPGIDGIQYRDXXXXXXXXXXXXXXY-NKIISD-KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI---GKSPVKILAYADDIALVACSVSELQKITD 5135 +P T +E++ +K D +PG DG+ E L Y N+ +S+ K D +K+ TL+ K D+ +++ +WR I+LL++ YK+ A L +RL + L +++ I Q K ++ +L + ++ +K I LD K AF V EY+W L+ G F +I++LY + T + I T +GVKQGCP+S L+ LAI+P+L + ++D R I K K+ A+ADDI +V + E + +T+ Sbjct: 317 QPITKEEIIEVIKGLHDGKTPGPDGLPAELYKACVNEVINLLQNYFNEGLSEGKMNEDFYKSVITLIYKKGDQ----NELDNWRQISLLNIDYKILAKILMNRLNQ--HLEKIIEIEQTCAVKGRYMWDNLGMLRELILNN---DDKDFYIVSLDQKKAFDFVSREYLWEALQHYGFPPNFIAMIKLLYKKSITQINVNGILTEPFETHRGVKQGCPLSAALYVLAISPLLNKI-KNDTRIKGIKIFDKKSFKLTAFADDITVVIKNQKEFRILTE 582
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000046127.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:16384999:16389616:1 gene:ENSAMXG00000035718.1 transcript:ENSAMXT00000046127.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 99.3673 bits (246), Expect = 9.993e-21 Identity = 66/205 (32.20%), Postives = 108/205 (52.68%), Query Frame = 3 Query: 4533 KEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDG-CVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVK---ILAYADDIALVACSVSELQKI 5129 K D+Y+ +++WR + L+++ YK+FA L +RL + +D +NE G KG S D C+ I + L S + I LD K AF S+ EY+W++L + F +I++LY ++ T I I +GVKQGCP+S L+ LAINP+L ++ + + + S + + A+ADDI + + EL + Sbjct: 145 KGDEYE-LNNWRQVTLMNIEYKIFAKVLMNRLEKILDKIINEEQTCGIKGRSMWDNLCIIRELITNKHLNESGF------YILALDKKKAFDSISREYLWAVLERYNFPDVFIKMIKLLYLKSTVQVKVNGKLTEKIDICRGVKQGCPLSAALYVLAINPLLTSLKKEEKLTGVYVNSELNKYVVSAFADDITIFIKNQDELNTV 342
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000033573.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:31407009:31410218:-1 gene:ENSAMXG00000030324.1 transcript:ENSAMXT00000033573.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 98.5969 bits (244), Expect = 6.326e-20 Identity = 87/298 (29.19%), Postives = 141/298 (47.32%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKKADNTS-PGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIG-QKGG-SKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL 5204 EP EV +KKA ++S PG G+ Y+ + L + I + W+ + + PK E+ ++ +R I+LLSV K+F S LA RLT ++ N + QKGG GC+EH +++ + +R + LA+ WLD+ +A+GS+PH+ + + L V A +I Y S S G I + + G+ GC IS+ILF LA+N ++++ + + CR M G + A+ DD+ + SV + I ++PEK L L Sbjct: 256 EPLLK-EVQDVVKKARSSSAPGPSGVPYKVYKNCPLLLERLWKILKVIWRRGKVARQWRFAEGVWIPK---EEVSKNIDQFRIISLLSVEGKIFFSILARRLTDFLSSNHYIDTSVQKGGIPGVPGCLEHTGVVTQLIREARENKGD-LAVLWLDLANAYGSIPHKLVQTTLERHHVPGQVAELIMNYYDQFSMRVSTGSITSEWHRVEVGIITGCTISVILFVLAMNMLVKS-AETQCRGPKTMTGVRQPPVRAFMDDLTITTESVPGSRWILQGLEELCGWARMRFKPEKSRSLVL 547
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000028058.1 (pep primary_assembly:ASM223467v1:18:21516917:21520645:1 gene:ENSORLG00000027382.1 transcript:ENSORLT00000028058.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 103.605 bits (257), Expect = 2.267e-21 Identity = 116/432 (26.85%), Postives = 194/432 (44.91%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS----PVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD----TDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNS----NISVNITSQLRNSFRKMLLLPKHS 5567 +P T DE++ LKK +N SPG DG+ L +Y + I + + + K L PKP+K+ + +WRPI LL+V YK+ A A RL +L+E++ Q G K+ + ++ L++S + ++ L I +LD AF +V H ++++ L+ G E F + +M Y + S+ + I + V+QGCPIS F I L ++ +C P ++G S +KI ADD AL +++ D+A++T G KC L + NV + I+ I IK + + YLG+ + D QN ++K+ + DL + ++ K SR+++P +L P+ S N+ VN T + R + + L HS Sbjct: 455 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKDIKSRQKQNFSLRIKKMQDVMNMWLQRDLSIFGRILLTKAEGISRVVYP-------ALSLFVPDSTSKEINNLLVNFTWKNRRHYLQKEQLYAHS 859
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000036683.1 (pep primary_assembly:ASM223467v1:19:23029986:23032853:-1 gene:ENSORLG00000028041.1 transcript:ENSORLT00000036683.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 101.679 bits (252), Expect = 6.748e-21 Identity = 95/338 (28.11%), Postives = 158/338 (46.75%), Query Frame = 3 Query: 4326 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIG----KSPVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 5309 +P T DE++ LKK +N SPG DG+ L +Y + I + + + K L PKP+K+ + +WRPI LL+V YK+ A A RL +L+E++ Q G K+ + ++ L++S + ++ L I +LD AF +V H ++++ L+ G E F + +M Y + S+ + I + V+QGCPIS F I L ++ +C P ++G + +KI ADD AL +++ D+A++T G KC L + NV + I+ I IK + + YLG+ + D Sbjct: 168 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKD 485
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000026767.1 (pep primary_assembly:ASM223467v1:20:16240812:16243805:1 gene:ENSORLG00000027933.1 transcript:ENSORLT00000026767.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.8265 bits (242), Expect = 1.055e-19 Identity = 77/339 (22.71%), Postives = 154/339 (45.43%), Query Frame = 3 Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450 +N+I+ + +P+ W+ +++L P + + SS+R I L+S K++ + +RL + +++ E Q G H + L +E R K L ++D++ A+ VP E +W +R GV+E + V+Q +Y + T C QT + G+ QG +S LF++ ++ + + V + +SP ++ +ADDI + + S ++++ + G + K Y+ L D + + +K+++ ++YLG V D + E+ ++V + + +L D + K K YK V L++ T Sbjct: 557 FNRILESEKMPEEWR--RSVLVPIFKNKGDMQNCSSYRGIKLMSHTMKLWERVVEARLRKKVEICEQ----QYGFMPHKSTTDAIFALRMLMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLMDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGTEVKKVQE---FKYLGSTVQCDGECGK-EVKRRVQAGWSGWRKVSGVLCDRRVPARLKGKVYKTVVRPALLYGLET 874
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000041539.1 (pep primary_assembly:ASM223467v1:19:17060561:17061979:-1 gene:ENSORLG00000024322.1 transcript:ENSORLT00000041539.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 95.5153 bits (236), Expect = 1.210e-19 Identity = 77/339 (22.71%), Postives = 153/339 (45.13%), Query Frame = 3 Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450 +N+I+ + +P+ W+ +++L P + + S++R I L+S K++ + +RL + +++ E Q G + L +E R K L ++D++ A+ VP E +W +R GV+E + V+Q +Y + T C QT + G+ QG +S LF++ ++ + + V + +SP ++ +ADDI + + S ++++ + G + K Y+ L D + + +K+++ +RYLG V D D E+ ++V + + +L D + K K YK V L++ T Sbjct: 32 FNRILESEKMPEEWR--RSVLVPIFKNKGDTQNCSNYRGIKLMSHTMKLWERVVEARLRKKVEICE----QQYGFMPRKSTTDAIFALRMLMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLMDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGAEVKKVQE---FRYLGSTVQCDGDCGK-EVKRRVQAGWSGWRKVSGVLCDRRVSARLKGKVYKTVVRPALLYGLET 349
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000029550.1 (pep primary_assembly:ASM223467v1:10:12459435:12462428:-1 gene:ENSORLG00000024533.1 transcript:ENSORLT00000029550.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 96.6709 bits (239), Expect = 2.442e-19 Identity = 77/339 (22.71%), Postives = 153/339 (45.13%), Query Frame = 3 Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450 +N+I+ + +P+ W+ +++L P + + S++R I L+S K++ + +RL + +++ E Q G + L +E R K L ++D++ A+ VP E +W +R GV+E + V+Q +Y + T C QT + G+ QG +S LF++ I+ + + V + +SP ++ +ADDI + + S ++++ + G + K Y+ L D + + +K+++ ++YLG V D D E+ ++V + + +L D + K K YK V L++ T Sbjct: 557 FNRILESEKMPEEWR--RSVLVPIFKNKGDMQNCSNYRGIKLMSHTMKLWERVVEARLRKKVEICEQ----QYGFMPRKSTTDAIFALRMVMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLIDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGTEVKKVQE---FKYLGSTVQCDGDCGK-EVKRRVQAGWSGWRKVSGVLCDRRVPARLKGKVYKTVVRPALLYGLET 874
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 3122.41 bits (8094), Expect = 0.000e+0 Identity = 1614/2157 (74.83%), Postives = 1822/2157 (84.47%), Query Frame = 3 Query: 327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743 TL + NN +KN FKS +RTL+++EK LF++FP + IK KE+ K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS K K I +KT +++S II S NN+ K+ AS IK+FL LS KL+ETATISN K RG Q++ L +K++ LPDYL+KS IK+ DG+F M+D+LS SD++ TL SS+LSRSQ++DL+ FP++ EL F+E+ + + + NL+NNLK FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M D TL SL QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + + TL ++IE WA SL++ IP SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI +NSFL +ID++YPQKA Q L LSNNIN IK E+ + + KAKRFL+FVIRDKKK+L SKYSYRI CRKICT NM HI I+++LL L S++ D+SDS T+ N E +V+ ++ T + + + L+VDID ++ + ++SKSALIS+ETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGN K KINKGIL+ FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN NF KRS LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR FRKML LP SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV FE++D +NL KY++LK +IQ KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI SARRW++HKTG L +P++ Sbjct: 4090 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVESI---------------------------IHTTISKSALISEETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6215 HSP 2 Score: 3051.15 bits (7909), Expect = 0.000e+0 Identity = 1593/2161 (73.72%), Postives = 1797/2161 (83.16%), Query Frame = 3 Query: 327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPT--SVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIIS--IVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743 TL + NN +KN FKS +RTL+++EK LF++FP + IK KE+ K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS K K I +KT +++S II S NN+ K+ AS IK+FL LS KL+ETATISN K R LPDYL+KS IK+ DG+F M+D+LS SD++ TL SS+LSRSQ++DL+ FP++ EL F+E+ + + + NL+NNLK FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M D TL SL QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + + TL ++IE WA SL++ IP SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI +NSFL +ID++YPQKA Q L LSNNIN IK E+ + + KAKRFL+FVIRDKKK+L SKYSYRI CRKICT NM HI I+++LL L S++ D+SDS T+ N E +V+ ++ T + + + L+VDID ++ + T + H +SKSALISKETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ I H + IVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGNK KINKGIL+ FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN NF KRS LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR FRKML LP SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV FE++D +NL KY++LK +IQ KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI SARRW++HKTG L +P++ Sbjct: 1756 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKQRA---------------LPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVESIIHTTSGTQQNH----------------------ISKSALISKETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3859 HSP 3 Score: 790.801 bits (2041), Expect = 0.000e+0 Identity = 376/628 (59.87%), Postives = 482/628 (76.75%), Query Frame = 3 Query: 4824 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 6707 +LL+ + VS F ++Q+LY++TS+FY C +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+ PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA IGFEYRPEKC Y+Q P V+ + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL VT PRLGIK PTL + +W+NGK+S HSG+KTRF R+R +I +F+R H I + F I S+ ITT++ GT I+ LR+T SK+LH AL DSYL KWE SN++ S+I+L P++NK IFR DL++F W FIHRARTNTLS AKP+ GE RLCRRC SE+ET+ HVLQ+CK++ LA+ RH+ CL I + + + P L+VVVDH C+LVP S ERVDLIIT+ KK I LVDMKCP DSV+ F+ +D +NLEKY LK +IQ KPD+KV+L TCI+G+LGS +KT +LLLK+G+ + + GL+KECAISNI SA+ Y Sbjct: 901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527 HSP 4 Score: 577.4 bits (1487), Expect = 9.466e-167 Identity = 363/903 (40.20%), Postives = 540/903 (59.80%), Query Frame = 3 Query: 1719 KAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTL--LTFLNKITXXXXXXXXXXXTVEN-----GIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVD-IDGIQPTSVES--TNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPK-------FMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPD----RVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 4364 K+KRF+YF++RD KKYL +++ R+ + C K CT M+ I+ I+ L + K E+D +EN IV EE L +C ++ ++ N N+ + +D I ++P S ES TN H P T + R + ++ + + + STI NK L RDP IWF+D+DID YLE HI + I CFIV IL +N E++ IP + A+++ CPLNI+ +HWILFVYCK S +SYFIDPIL+ R+ +NK AL++ +ALN+ FNLK A++++PH+N YQ N++DCGP+ CAYA++IS +FPD FID IR++VH+ Q+ + GG K F + I + + T L Q C+SS++ +Y++ +VLS ELT+N++AQN +FI +NVTF+QF GIDHI+ ++P ++W LFI+S+ L +S+IF+F+ R + +RLI IG +T+YLN+F + NR V F++ H+I H++ S D+ FAS FI+L E L++ + + + L +K + EI LN IN KI ++I +YF+ LKL+ +++LLN+T+C AI DDCT+++ FLN E ++KA VIFAII+PPK E+LL+IDY T+E+Y ++P T Q C KINE++E+ GR + G +DIRGSGL+SK+LICAFI+NYA D L N+NL EIG ++SL+PI+ S + K+ LNL+QRK KI++LL +S V+EII I+ P + K +PYLG N K N A F+T+MK+TV +ILN+ V I P FQ+I++NF W+ + FSK S +L L +++E++ L+ Sbjct: 17 KSKRFIYFLLRDSKKYLIRNQTF-RLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENIDITKPIVIEEIHCMKCNSILEKC--ILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSP--ITENIINPPTKR----TGQRNTVKKQPSKPKSTI----CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIV---GNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 3044.99 bits (7893), Expect = 0.000e+0 Identity = 1588/2157 (73.62%), Postives = 1792/2157 (83.08%), Query Frame = 3 Query: 327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743 TL + NN +KN FKS +RTL+++EK LF++FP + IK KE+ K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS K K I +KT +++S II S NN+ K+ AS IK+FL LS KL+ETATISN K RG Q++ L +K++ LPDYL+KS IK+ DG+F M+D+LS SD++ TL SS+LSRSQ++DL+ FP++ EL F+E+ + + + NL+NNLK FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M D TL SL QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + + TL ++IE WA SL++ IP SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI +NSFL +ID++YPQKA Q L LSNNIN IK E+ + + KAKRFL+FVIRDKKK+L SKYSYRI CRKICT NM HI I+++LL L S++ D+SDS T+ N E +V+ ++ T + + + L+VDID ++ I T+ D TI WFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGN K KINKGIL+ FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN NF KRS LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR FRKML LP SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV FE++D +NL KY++LK +IQ KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI SARRW++HKTG L +P++ Sbjct: 4061 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVES--------------------------------------IIHTTNRDPTI------------------WFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6157 HSP 2 Score: 3014.94 bits (7815), Expect = 0.000e+0 Identity = 1584/2159 (73.37%), Postives = 1785/2159 (82.68%), Query Frame = 3 Query: 327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIIS--IVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743 TL + NN +KN FKS +RTL+++EK LF++FP + IK KE+ K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS K K I +KT +++S II S NN+ K+ AS IK+FL LS KL+ETATISN K R LPDYL+KS IK+ DG+F M+D+LS SD++ TL SS+LSRSQ++DL+ FP++ EL F+E+ + + + NL+NNLK FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M D TL SL QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + + TL ++IE WA SL++ IP SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI +NSFL +ID++YPQKA Q L LSNNIN IK E+ + + KAKRFL+FVIRDKKK+L SKYSYRI CRKICT NM HI I+++LL L S++ D+SDS T+ N E + P + + VDI + VE+ + +H + +R +ETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ I H + IVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGNK KINKGIL+ FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN NF KRS LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR FRKML LP SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV FE++D +NL KY++LK +IQ KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI SARRW++HKTG L +P++ Sbjct: 1756 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKQRA---------------LPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVE------INPGTQSGSI---------------VDI-----SVVETGSTEHARVKRRL-----------------------EETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3830 HSP 3 Score: 788.875 bits (2036), Expect = 0.000e+0 Identity = 376/628 (59.87%), Postives = 482/628 (76.75%), Query Frame = 3 Query: 4824 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 6707 +LL+ + VS F ++Q+LY++TS+FY C +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+ PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA IGFEYRPEKC Y+Q P V+ + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL VT PRLGIK PTL + +W+NGK+S HSG+KTRF R+R +I +F+R H I + F I S+ ITT++ GT I+ LR+T SK+LH AL DSYL KWE SN++ S+I+L P++NK IFR DL++F W FIHRARTNTLS AKP+ GE RLCRRC SE+ET+ HVLQ+CK++ LA+ RH+ CL I + + + P L+VVVDH C+LVP S ERVDLIIT+ KK I LVDMKCP DSV+ F+ +D +NLEKY LK +IQ KPD+KV+L TCI+G+LGS +KT +LLLK+G+ + + GL+KECAISNI SA+ Y Sbjct: 901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527 HSP 4 Score: 575.859 bits (1483), Expect = 3.227e-166 Identity = 363/903 (40.20%), Postives = 540/903 (59.80%), Query Frame = 3 Query: 1719 KAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTL--LTFLNKITXXXXXXXXXXXTVEN-----GIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVD-IDGIQPTSVES--TNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPK-------FMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPD----RVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 4364 K+KRF+YF++RD KKYL +++ R+ + C K CT M+ I+ I+ L + K E+D +EN IV EE L +C ++ ++ N N+ + +D I ++P S ES TN H P T + R + ++ + + + STI NK L RDP IWF+D+DID YLE HI + I CFIV IL +N E++ IP + A+++ CPLNI+ +HWILFVYCK S +SYFIDPIL+ R+ +NK AL++ +ALN+ FNLK A++++PH+N YQ N++DCGP+ CAYA++IS +FPD FID IR++VH+ Q+ + GG K F + I + + T L Q C+SS++ +Y++ +VLS ELT+N++AQN +FI +NVTF+QF GIDHI+ ++P ++W LFI+S+ L +S+IF+F+ R + +RLI IG +T+YLN+F + NR V F++ H+I H++ S D+ FAS FI+L E L++ + + + L +K + EI LN IN KI ++I +YF+ LKL+ +++LLN+T+C AI DDCT+++ FLN E ++KA VIFAII+PPK E+LL+IDY T+E+Y ++P T Q C KINE++E+ GR + G +DIRGSGL+SK+LICAFI+NYA D L N+NL EIG ++SL+PI+ S + K+ LNL+QRK KI++LL +S V+EII I+ P + K +PYLG N K N A F+T+MK+TV +ILN+ V I P FQ+I++NF W+ + FSK S +L L +++E++ L+ Sbjct: 17 KSKRFIYFLLRDSKKYLIRNQTF-RLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENIDITKPIVIEEIHCMKCNSILEKC--ILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSP--ITENIINPPTKR----TGQRNTVKKQPSKPKSTI----CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIV---GNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1) HSP 1 Score: 2053.1 bits (5318), Expect = 0.000e+0 Identity = 1113/1946 (57.19%), Postives = 1408/1946 (72.35%), Query Frame = 3 Query: 873 DGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAE--NIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGG---LPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSA 6695 DG+F M+D+L+ +++ E+ + ++LSRSQ+K+L+ FP+I EL F E +I+++PE LINL+N K+ + FP++ISFVGGKF+K +K+ S+ Q E +SDIMFNLGL +L +SE DN L SLLCQPKS EKLVDI+F+LNYL LKG +T+GTY +YV NY++NCLL++SI++ + L +NIE WA LIE IPS+S++SSSCKE+LL+L+QWKLS EIDRIHNII P+TI E+N+FL ID+ Y K+ Q LT L IN+I+++ DL KAKR LYF+IRDKK++L+K ++Y I CRKICT M+ F+ K+ E + + V+N I + P NENLN ++ ++ + PT P +V ETDADSTI IN E RD IWFTDDDID YLE+HI + FA + CFIVEIL +N +++FP+P+ +FKAQIILCPLNI+++HWILFVYCK + SYF+DPIL+ RH +NK+ AL++TMALN LF+LKAA+TFHPH+N +YQ+N+YDCGPYICAYAM+IS WQ+FP++FI+ IRK VH+ Q + Q KVSGGG LP F K + +A L +NSC+ SL+ E+F + TVLSPELT+N++A N FIRENVTFRQFT + ++I+++PN+ +W L+IFS V SYI NF R++ ERL++IGE+MT+YLNKF IS KV FI HN H S S+D FASAFI +E F +S T+ +E LKS K++ NEIC NLN IN IN+EI KYF NL L SNF+ LN MCTAI+DDCTR+L FLNY+++IKAQVIFAI+APPK REIL IIDY TDEYY++NPTTL G ++Y S C+I RNKINEI+E+P RV+N+G+ P+DIRGSGLVSK+L C+++ NYANDLPL+ LNLR+IG +SS LPI SE KK+ + I + K + NL++RK KID+LL V + V+EI+D+I+ Q + +KPYLGN + +INK LI NF +DMK+TVN I+N++DV +RP ++ I++NF K P W+ +F F RS L L+ +N EV+ ELKKADNTSPG+DGI+YRD+++LDPEGKLLT L+NKIIS K IPDSWK+FKTLL PKP K DKYD VSSWRPIALLSVIYK+FASCLA+RLT WI+ N LLHIGQKGGS+HDGCVEHNSILS+ALEHS+YS N LAIAWLDIKDAFGSVPH YMWSLLRF+G+ F+ RS C PFMIG+S VKILAYADDIALV+ S +LQ++T+IAV A+EIGFEYRPEKCGY++LP ++ ++ I INDI+IKRL S+EFY+YLGVPVG +TDQ+PY+IL+KVVSDT+ +ADSDLLGWQKLKAYKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENGGANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI PTLQE DW+NGK+ ++ I + H I+I F +T + SL+IT+ GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IAS+I+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++ F +D +NL+KY++LK +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SA Sbjct: 199 DGDFLMLDLLNSFEIE-GELGQKITELSRSQIKELFNSFPEIQELFFIEKKSIDENPEKLINLINKFKIEETFPQQISFVGGKFVKIDKLNDSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTCLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYHIPFNCRKICTLKMSD-----------FITKLIQSNELFEEREAVVDNNI---------DVSP-------------NENLNILI---VEPVNPT----------------------------PDTVIV------ETDADSTI----INYFFPE--RDSKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSACKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIASEIKKVKSLENNIINENHKESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTHKPYLGNIERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDMVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPGKGDKYDSVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGLMRNFSI----------------------------------------------------RSKCEPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEP--------------KLGI---LKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKIQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSA 1998 HSP 2 Score: 504.212 bits (1297), Expect = 1.664e-144 Identity = 232/331 (70.09%), Postives = 279/331 (84.29%), Query Frame = 3 Query: 5736 RLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTL 6728 RLGI PTLQE DW+NGK+ P HSGKKTRFQR RIAI+FF + H I+I F +T + SL+IT+ GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IAS+I+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++ F +D +NL+KY++LK +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SARRW+YHKTG L Sbjct: 2052 RLGIINPTLQETFDWINGKEPKPWHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWHYHKTGIL 2382
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1) HSP 1 Score: 1312.75 bits (3396), Expect = 0.000e+0 Identity = 713/1316 (54.18%), Postives = 880/1316 (66.87%), Query Frame = 3 Query: 2169 SKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGG---LPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISD---KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIF 6098 S S IS+ETDADSTI + RDP IWFTDDDID YLE+HI + FA + CFIVEIL +N +++FP+P+ +FKAQIILCPLNI+++HWILFVYCK + SYF+DPI + H +NK+ AL++TMALN LF+LKAA+TFHPH+N +YQ+N+YDCGP+ICAYAM+IS WQ+FP++FI+ IRK VH+ Q S Q KVSGGG LP F K + +A L +NSC+ SL+ E F + TVLSPELT+N +A N FIRENVTFRQFT + ++I+++PN+ +W L + + ERL++IGE+MT+Y NKF IS KV FI HN H S S+D FASAFI +E F +S T+ +E LKS K++ NEIC NLN IN IN+EI KYF NL L SNF+ LN MCTAI+DDCTR+L FLNY+++IKAQVIFAI+APPK REIL IIDY TDE Y++NPTTL G ++Y S C+I RNKINEI+E+P RV+N+G+ P DIRGSGLVSK+L C+++ +N ++ LP++ LNL Q + L VS + ++ + + ++N N K +KI++ +LI F ++ V+ I + I + PT + P+ N + + +S++I N F +D +K NT II+D IPDSWK+FKTLL KP K DKYD VSSWRPIALLSVIYK+F SCLA+RLT I+ N LLHIGQKG S+HDGCVEHNSILS+ALEHS+Y N LAIAWLDIKDAFGSVPH YMWSLLRF+GV E F +I+ + S+ STFYSCG I TPNI I QGVKQGCPISMILF+LAINPVLEA+SRS C PFMIG+S VKILAYADDIALV+ S +LQ++T+IAVA A+EIGFEYR EKCGY++L L S + +KVVSDT+ +ADSDLLGWQKLK YKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENG ANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI PTLQE DW+N K+ P HS KKTRFQR RIAI+FF + H I I F +T + SL+IT+ GT ILT DLR+TTSKVLHMALCDSYL KWE G TSN IAS+I+LSP INKAI+ Sbjct: 69 SISVSISEETDADSTINYYFFPE------RDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPIFRKWHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPHICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEGFSNKNYITVLSPELTLNFIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCL-----------------QSLNERLVSIGESMTDYPNKFFISTAKVNFIVNHNQIHFSFRSEDPHFFASAFIEFLEKFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDECYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPYDIRGSGLVSKILFCSYM------------------SNYANDLPLVG--------------------LNLRQIDSVVSSFLPIVSEIKN-------VKSLENNIINENHKESENLKERKNKIDQ-LLIKVFKMNVDEIVDVIFDQISIKTVPTHK----------PYLDNKERVESQINKSNLIKN---FNSD-----MKTTVNT----------------------------IINDVDVDVIPDSWKSFKTLLIQKPSKGDKYDSVSSWRPIALLSVIYKLFTSCLANRLTFCINKNNLLHIGQKGDSRHDGCVEHNSILSSALEHSKYGKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTIIERMDSDKSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAISRSKCEPFMIGESTVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRSEKCGYIEL------------------LLSKQ---------------------KKVVSDTRKIADSDLLGWQKLKTYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGMANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINVKELKPRHSCKKTRFQRARIAIAFFKKEHDIYIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGRTSNFIASAIKLSPKINKAIY 1230
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000079542.1 (SMESG000079542.1) HSP 1 Score: 1076.23 bits (2782), Expect = 0.000e+0 Identity = 591/1162 (50.86%), Postives = 778/1162 (66.95%), Query Frame = 3 Query: 3249 SDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSN--LNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTL 6728 SDD + AS FI+ +E I V+ + E L +++ K +E+ +NLN NCKI E++ +F NL L+ NF+ LN TM TAIL+DCT++L +FLN E+L+KA+++FAIIAPPK R+IL+IIDY +DEYY++NP++L Y KINEIKETP +G+ P+DIRGSGLVS++LICAFIK+YA DL L N+NLR+IG I SLLP + + ++ D K K+N L L+QR L I+E L + + VNE+ + I + + K K ++F +MK+TV KIL N +++ RPT + + NF + P +++ + NF +S L L P + EV+ ELK+ADNTSPGIDGI+Y D+ + D EGKLLTLLYNKII++ T+PD WK+FKTL+TPKPDK DKY+ +SSWRPIALLSV+YK+FAS L+ RLT W++ N LLHIGQKGGS HDGCVEHNS+LS+ LEHS+YS + P+ IA+LDIKDAFGSVPH+YMW +LR IGV E F +++LY+ TS++Y+CG I TPNIPI QGVKQGCP+SMILF++AINPVL+AV+ S +PF +G+S +++LAYADDIAL+A + +LQ I +IA A EIGFEYRP+KC Y+QLPNV+ + T+Q+PYEIL KVVSD K LADSDL GWQKLKAYK F+HSRL FPFRTR+ K ALS +N+ N T++LR+ RKM+ LP +SE+ YFY+S ENGGA+C DLLDEYHTQTI++ FRL T+ C+F ++IN DSLKFVTGPRLG P+LQ+ +W+N D I HSGKK RF R R AI FF +TH I ISF + + + L +TTA+ GT+ILT R+ SKVLH+AL DSY KW++ SNII E RLCRRC+++++T+ HVLQ+CKVHL LA RH++CL+ I + L P+LIVVVDHTC+LV NSKERVDLIIT+ KK I +VD+KCP DS+ TFE ++K NL KY++LKK+IQ AKP F VD+ TCIIG++GS+ +LL K+G+ ++ A W+YH TG L Sbjct: 3 SDDPIHHASTFILFLEEFISGNVVNRDKVIEKLVNMQSKMCDEVVVNLNLKNCKITEKLLTNFFINLNLSENFIFLNNTMTTAILNDCTQYLNEFLNIENLMKAKIVFAIIAPPKARQILMIIDYTSDEYYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSGLVSRILICAFIKHYALDLSLENINLRDIGNVIKSLLPTVQD----IIKDSIKNLSDNKTNVKLKLDQRILLINENLLTLQNANVNEMRNKISKVPHPKTKFK---------------------SSFNQNMKTTVYKILVNDEINERPTIKDHIGNFSHQDPLIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAIHDAEGKLLTLLYNKIITENTMPDVWKSFKTLMTPKPDKGDKYNLISSWRPIALLSVVYKIFASILSRRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMILFAIAINPVLQAVTLSKVKPFKVGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPKKCAYIQLPNVET--------------------------ISEHTNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTRDFKISALS-----ANVCNN-TTKLRSHLRKMMSLPNNSEISYFYNSVENGGASCTDLLDEYHTQTISYFFRLFTANCEFTKRINIDSLKFVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKPRFFRPRTAIQFFEKTHNITISFEVLDDKPILRLTTALKGTIILTEFDRRLVSKVLHLALYDSYFTKWKN---SNII---------------------------------------------ENRLCRRCHNQDKTLPHVLQNCKVHLTLALNRHNDCLQQIVHHL-KSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKCPFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVDIFTCIIGSMGSY-----DLLGKMGVPFEKV---------------ALSWHYHVTGVL 1038 The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022861 ID=SMED30022861|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=7160bpback to top protein sequence of SMED30022861-orf-1 >SMED30022861-orf-1 ID=SMED30022861-orf-1|Name=SMED30022861-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1398bp MALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDback to top protein sequence of SMED30022861-orf-2 >SMED30022861-orf-2 ID=SMED30022861-orf-2|Name=SMED30022861-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=715bp NLKITIKNNTNKVKFNFPEIERDDLSLIESGDLNKISNDDFESQIVNKISback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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