Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Overview
NameRetrovirus-related Pol polyprotein from type-1 retrotransposable element R2
Smed IDSMED30022861
Length (bp)7160
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30022861) t-SNE clustered cells

Violin plots show distribution of expression levels for Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30022861) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30022861) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (SMED30022861) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30022861

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30022861SMESG000021486.1 SmedASXL_018363SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30022861SMESG000021486.1 SmedASXL_018363SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30022861SMESG000021486.1 SmedASXL_012156SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30022861SMESG000021486.1 SmedASXL_012156SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX649434.3 (pep chromosome:GRCz11:3:18270043:18274691:-1 gene:ENSDARG00000105157.2 transcript:ENSDART00000161140.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX649434.3)

HSP 1 Score: 102.449 bits (254), Expect = 5.974e-21
Identity = 104/376 (27.66%), Postives = 193/376 (51.33%), Query Frame = 3
Query: 4278 NAIF--NFSK---RSSVILNLEPFTNDEVMLELKKADN-TSPGIDGIQ---YRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSR-YSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI--GKSPVKILAYADDIALVACSVSELQK----ITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD--TDQNPYEILQKVVS 5351
            N++F  N SK    S+ +L L P + DE+   +   +N  SPGIDGI    Y+  +L    G+ L L+ N  ++  ++P S +  + ++T  P K D    + +WRP++LL   YK+ +  LA RL++ +D  +++   Q     +    ++  ++  ALE ++ +  N    +  LD + AF  V HEY+  +L+  G S  F  +I+++YSN  +        +    + +GV+QGC +S +L+S+AI P+L  + R++ + F I    + V++ AYADD+ +   +  ++++    I +    ++A++ +    EK   L + +   D  +    ++ KR     F +YLGV +G      QN   +L+K+ S
Sbjct:  460 NSVFFENLSKVDDESNAMLEL-PISQDELYTVMMSMENGKSPGIDGIPVDFYK--VLWPVIGEDLFLVLNDSLNKGSLPLSCR--RAVITLLPKKGD-LQKIGNWRPVSLLCSDYKILSRALAVRLSKVLD--QIIQPNQNYSIPNRSIFDNIFLIRDALEVAKLFGIN--CGLISLDQEKAFDRVEHEYLKKVLKVFGFSTHFIKMIEVMYSNIQSVLKINGGLSAPFDVQRGVRQGCAMSGMLYSIAIEPLLHRI-RAELKGFSIPHCNTQVQLSAYADDVIVFITNTDDVRRLECIINNFKKISSAKVNW----EKSEALLIGDWKRDPPLLPGGLKWKR----GFLKYLGVYLGESDFVQQNWNGLLEKIQS 816          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: BX547930.4 (pep chromosome:GRCz11:20:12830448:12834749:1 gene:ENSDARG00000098779.2 transcript:ENSDART00000164754.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX547930.4)

HSP 1 Score: 102.449 bits (254), Expect = 6.072e-21
Identity = 82/279 (29.39%), Postives = 143/279 (51.25%), Query Frame = 3
Query: 4329 PFTNDEVMLELKKADN-TSPGIDG--IQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRS----DCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIA 5141
            P T +E+   L+   N  +PG+DG  +++           LL +L N + S   +P S +  + +LT  P K D   +V +WRP+ALL   YK+ +  LA+RL     + +++HI Q     +   V++ S++   +E S+    K + +  LD + AF  V H+++W+     G    F  +I++LYS+  +     G +  P   I +G++QGC +S +L+S+A+ P+L  + R      C        PVK+ AYADDI ++    +++ K+ DI 
Sbjct:  470 PLTTEELFKALQSMKNGKAPGLDGLPVEFYKAYWFFLGEDLLEVLSNSL-SKGKLPVSCR--RAVLTLLPKKGD-LKEVKNWRPVALLCTDYKILSKALANRLRE--VMGQVIHIDQSYCVPNRSIVDNISLIRDVIEVSKIFGLK-VGLLTLDQEKAFDRVEHQFLWNTFEAFGFPIVFIDMIKVLYSDIGSILKINGGLSVP-FKINRGIRQGCALSGMLYSIALEPLLNKIRRELEGFKCENLF---PPVKLSAYADDIMVLFNGQNDINKLVDIV 737          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CABZ01033394.1 (pep chromosome:GRCz11:13:6032844:6038477:-1 gene:ENSDARG00000101795.2 transcript:ENSDART00000166130.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CABZ01033394.1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.332e-20
Identity = 117/478 (24.48%), Postives = 210/478 (43.93%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKKAD-NTSPGIDGIQYRDXXXXXXXXXX-XXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPV--KILAYADDIALVACSVSELQK----ITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQ--NPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREI----------KTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARK 5699
             P +  E++  LK      +PGIDG+      +           + N+ +++ ++P S +  + ++T  P K D   ++ +WRP++LL   +K+ +  LA+RL   I    ++H  Q         +++ S++   L+ S Y  N  L +  +D + AF  V H+Y+W+ L   G   GF  +I++LY +  +        +    I +G++QGC +S +L+SLAI P+L  + RS    FM+    V  ++ AYADD+ +      ++      I++    +AA + +     K   L     +  T I    +  K+       +YLGV +G  T Q  N   I++K+                KLK ++ ++H +L F  R   I          + +    P+G   + + + ++L N F   +     SE+   Y   E GG   V L+  + T  +    RLLT   D   +
Sbjct:  476 RPLSELELLTALKAMQPGKAPGIDGLPIEFYKIFWDVLGEDFLAVLNESLTEGSLPLSCR--RAVVTLLPKKGD-LQEIKNWRPVSLLCSDFKILSKTLANRLKNVI--GHIIHPDQTYCVPGRSIMDNISLVRDILDLSSY-FNLDLGLISIDQEKAFDRVEHQYLWNTLEAFGFGSGFIGMIKVLYQDIESVLKINGGLSAPFKINRGIRQGCALSGMLYSLAIEPMLRKL-RSRIEGFMLANKSVQHQLSAYADDVIVFVNGQKDVNTLVSIISEFDKLSAARVNW----GKSDALINGKWNNGTPILPGGLIWKK----GGLKYLGVYLGESTMQQKNWDGIIEKIEG--------------KLKKWR-WIHPQLSFRGRVLIINNLIASTLWHRLFCTEPPSG---LLLFLQAKLVNFFWDRMHWVPQSEL---YLPLEEGGQGLVSLVSRHATFRLQFVQRLLTGPVDLVWR 917          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: CU462878.3 (pep chromosome:GRCz11:17:8542203:8545189:1 gene:ENSDARG00000103562.2 transcript:ENSDART00000158873.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CU462878.3)

HSP 1 Score: 99.3673 bits (246), Expect = 3.565e-20
Identity = 94/344 (27.33%), Postives = 167/344 (48.55%), Query Frame = 3
Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLY-SNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRS-DCRPFMIGKSPVKILAYADDIAL-VACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL---PNVDMDTVISI--NDIRIKRLESNEFYRYLGVPVGMDT----DQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450
            +N ++    IP SW+     + PK  K+   ++ SS+RPI++L+V YK+FAS L+ RL   + ++EL+ + Q G  ++    ++       + H        + ++ LD + AF SV  +Y++ +L   G +  F   I+ LY S  +     GH+ +  I + +G +QGCP+S  LF+L I P+ +A+    + +  +I K   KI  YADD+ L +A   S + K+  +        G++   +K   L     PN++M    +   N I +K         YLG+ +  D     D N   I +++ SD        L    +++A K+ V  RL++ F++
Sbjct:  310 FNYVLRGGEIPQSWQEAVISIIPKQGKDK--NECSSYRPISVLNVDYKLFASILSKRLE--VVISELVDLDQTGFIQNRQTQDNLRRTLQIMSHITTENISAMLLS-LDAEKAFDSVGWDYLYQVLARFGFNNKFIECIKGLYLSPKAKIKINGHL-SKTIYLERGTRQGCPLSPTLFALFIEPLAQAIREEPEIKGIVIKKEEHKICMYADDVLLFLANPKSSIPKLMSLLNTINFYSGYKINIQKTQTLTYNFRPNLEMKKQYNFKWNSISLK---------YLGINLTKDLSTLFDSNYGPIYKEIKSDIAKWTLLPLDMSSRIEAIKMNVVPRLLYLFQS 638          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Match: si:dkeyp-88h4.2 (si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-105])

HSP 1 Score: 98.9821 bits (245), Expect = 3.730e-20
Identity = 75/265 (28.30%), Postives = 125/265 (47.17%), Query Frame = 3
Query: 4515 LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPV-LEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPV 5300
            L PKPDK+    D  +WRPI LL+  YK+ AS  A RL R   L+ +++  Q G    +H  C   N+ L   L   +   +    I +LD   AF +V HE++   L+  G    F  V+QMLY + ++        +P  P+++G++QGCP+S  LF   +  + ++ +  ++     I    ++I   ADD  L      ++  +  I  A +   G +    KC  + L     DT+    D +I+ +   E  +YLG+ +
Sbjct:   55 LIPKPDKDPTIID--NWRPITLLNFDYKLLASIFAKRLKR--HLHYIINETQTGFIKGRHISC---NTRLVLDLIDYKNEIDSDAIILFLDFYKAFDTVKHEFLLDSLKAFGFPLKFLNVVQMLYKDINSCVILNSCTSPRFPVLRGIRQGCPLSPFLFLFVVETLSIDILHNNNLVGINIFNREIRISQLADDTTLFLKDKDQVSPVLTIINAFSDASGLKLNLLKCEIICL----YDTL----DAKIENIPIKEEVKYLGINI 304          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 [Source:Xenbase;Acc:XB-GENE-984439])

HSP 1 Score: 103.219 bits (256), Expect = 8.966e-22
Identity = 68/210 (32.38%), Postives = 105/210 (50.00%), Query Frame = 3
Query: 4551 DVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSA------ALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS-PVKILAYADDIALVACSVSELQKITDIAVATAAE 5159
            DV +WRPIALL+   K+ A  L SRL        +L  G     +    V+  SI  A       LE  +  +++   +  LD   AF  V H+Y+W+ LR  G+ + F   + +LY    +F      +  N  +  GV+QGCP+S +L+  AI+P L AV   D   F   +  P+K++AYADD+ +V     E+  +TD A+ + +E
Sbjct:  236 DVKNWRPIALLNTDRKLLAKVLFSRL--------ILFSGTLLSREQFCTVKGRSIFGALLSIREVLETCKAQSSRRYVVG-LDQAKAFDRVDHQYLWATLRKYGIPDQFVEWLTVLYREGESFPLVNGWRGENFGVEAGVRQGCPLSPLLYVFAIDPFLRAVQALDLEGFRAPRCLPLKLVAYADDVTVVVSHPEEVNLLTD-AIESYSE 435          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000024583.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:942889:946017:1 gene:ENSXETG00000015161.1 transcript:ENSXETT00000024583.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 5.790e-19
Identity = 62/203 (30.54%), Postives = 100/203 (49.26%), Query Frame = 3
Query: 4548 DDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAW------LDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI-GKSPVKILAYADDIALVACSVSELQKITD 5135
            + + +WRPIALL+   K+ A  L SRL        +L  G    S     V+  SI  A L   R +     A  W      LD   AF +V H+Y+W++L   G+   F   I++LY    +F      Q  +  +  GV+QGCP+S +L+  A++P L  + R       + G  P++ +AYADD++++    +E++ +TD
Sbjct:  280 ERIENWRPIALLNSDRKILAKILFSRL--------ILFSGTLLSSCQFCTVKGRSIFGAILT-IREALESCKAHGWGKYLLSLDQTKAFDNVNHDYLWAVLSKYGIPGRFISWIKVLYEGAKSFPLINGWQGEDFEVGAGVRQGCPLSPLLYVFALDPFLRMLERKGLEGVCVPGGQPLRFVAYADDVSVIVSKQAEVEVVTD 473          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000002428.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:3:15907829:15913358:1 gene:ENSXETG00000006437.1 transcript:ENSXETT00000002428.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.9005 bits (237), Expect = 7.164e-19
Identity = 70/214 (32.71%), Postives = 108/214 (50.47%), Query Frame = 3
Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKG--GSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDC-RPFMIGKSPVKILAYADD 5087
            Y + IS   +P+S      +L PKP K+ +     S+RPI+LL+   K++A  LA RL R I    L++  Q G   +K          L+ +L  S        AIA LDI  AF +V   Y+W +L+ +G    F  ++Q+LY +         + T N  + +G +QGCP+S +LF+LAI P  +AV +    + + +  +  KI  YADD
Sbjct:  492 YGEAISTGILPESMYEAAIILLPKPGKDPQL--CESFRPISLLTTDVKIYAKILARRLARVI--KTLVNPDQIGFIPTKTTALNTRRLYLNLSLTPSNTGNR---AIAALDIAKAFDTVEWSYLWCVLKQLGFGPTFINMVQLLYKSPRATLRINSLCTSNFTLSRGTRQGCPLSPLLFALAIEPFAQAVRKHPLIQGYELKGTIEKIQLYADD 698          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: sulf1 (sulfatase 1 [Source:Xenbase;Acc:XB-GENE-966419])

HSP 1 Score: 94.7449 bits (234), Expect = 1.375e-18
Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 3
Query: 4341 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 5255
            DEVM     L LKK    SPG DG+      ++RD+L            +N  +++  +P S +    +L  K   + +   + +WRPIALL+V  K+ A  L +RL    +  L+   H   KG S     +     +  ALE  R        +A LD   AF  + H+Y+W LLR  G+   F   +++LY    +F         +  +  GV+QGCP+S +L+  AI+P +  +        P   GK+ +++ AYADD+ +V  S  E   +  I    +   G      KC    +    P  D+  V  +   RIK
Sbjct:  500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Match: ENSXETT00000037748.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV460430.1:277026:279596:-1 gene:ENSXETG00000014464.1 transcript:ENSXETT00000037748.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 94.3597 bits (233), Expect = 1.612e-18
Identity = 91/324 (28.09%), Postives = 142/324 (43.83%), Query Frame = 3
Query: 4341 DEVM-----LELKKADNTSPGIDGI------QYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIK 5255
            DEVM     L LKK    SPG DG+      ++RD+L            +N  +++  +P S +    +L  K   + +   + +WRPIALL+V  K+ A  L +RL    +  L+   H   KG S     +     +  ALE  R        +A LD   AF  + H+Y+W LLR  G+   F   +++LY    +F         +  +  GV+QGCP+S +L+  AI+P +  +        P   GK+ +++ AYADD+ +V  S  E   +  I    +   G      KC    +    P  D+  V  +   RIK
Sbjct:  500 DEVMTAIDSLNLKK----SPGPDGLTAEFYKEFRDVLAPCLTEI-----FNSSLAEGLLPPSMRHSALILLSKGLDQSR---IENWRPIALLNVDRKILAKVLFNRLFPLAERLLSPSQHCSVKGRSTFSAVLG----IREALERCRACEWGKYLLA-LDQSKAFDRINHKYLWLLLRRYGLPGRFINWLKVLYRRAESFPLVNGWSGASFWVSSGVRQGCPLSSLLYVFAIDPFIRRLDGDALAGVPLAPGKA-LRVAAYADDVTVVVSSGEEADAVALIVQDYSEASGSLINRNKCEAFWMGKGDPAFDLPDVFPVAQSRIK 805          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03278|PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-25
Identity = 119/447 (26.62%), Postives = 199/447 (44.52%), Query Frame = 3
Query: 4296 SKRSSVILNL-EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL-PN-------VDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQ-LRNSFRKMLLLPKHSEVCYFYSSTENGG 5606
            S+    I NL  P +NDE+  E++    T+ G DG+        +   + +  L+N I+     P  +   +T+L PK   E    D + +RP+++ SV  + F   LA+R    I  + LL   Q+     DG  E+ S+LSA ++ +R    K L IA LD+K AF SV H  +   LR   +       I  +Y N+ T       +   I   +GV+QG P+S +LF+  ++ VL  +  +    F++G   +  L +ADD+ L+A +   LQ       A   E G E  P KC  L L P+       V+     ++ +  I +L   + ++YLGV   +     P ++   +  D + +  + L   Q++    +F+  R I            L +    SN  V    + +R + R  L LP  + + YF++  + GG
Sbjct:  306 SRMQGEIKNLWRPISNDEIK-EVEACKRTAAGPDGM---TTTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPK---EPGTMDPACFRPLSIASVALRHFHRILANR----IGEHGLLDTRQRAFIVADGVAENTSLLSAMIKEARMKI-KGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPENT--GFLMGAEKIGALVFADDLVLLAETREGLQASLSRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYLGV---VYNSYGPIQVKINIAGDLQRVTAAPLKPQQRMAILGMFLIPRFIHKL--------VLGR---TSNADVRKGDKIIRKTVRGWLRLPHDTPIGYFHAPIKEGG 724          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03274|PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.096e-17
Identity = 110/452 (24.34%), Postives = 194/452 (42.92%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFA-YVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYAD--------------DIALVA----CSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDL 5624
             P   +E+   +K    ++PG DG+  + +         + L   +      +P  W   +T L PK   +   ++ S+WRPI + S + ++    LA RL   ++L    H  QKG ++ DG +  NS+L      SR    K   +  LD++ AF +V H  +   L+ +G+ EG + Y+   L  +T+T       QT  I I +GVKQG P+S  LF+  ++ +L ++  +      IG+  + +LA+AD               +A VA         L     ++++ AA  G    P    +L++ NV    ++ + D    R+++   +RYLG   G+     P   +  +    K +  + L   QKL   +  V  +L+          Y L  P+  +    +    +R + ++ L L  H+    FY+   +GG    DL
Sbjct:    4 RPIAREEIQCAIKGWKPSAPGSDGLTVQAITRTRLPRNFVQLHLLR----GHVPTPWTAMRTTLIPK---DGDLENPSNWRPITIASALQRLLHRILAKRLEAAVEL----HPAQKGYARIDGTLV-NSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIPVLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKSVSISVAASGGVCI-PRTKPFLRVDNV----LLPVTD----RMQT---FRYLGHFFGLSGAAKP--TVYNLSRWLKCVEAAPLKPEQKLSLIREHVVPKLL----------YGLQNPSVTARTLRDADKLIRTTVKRCLHLHLHTPNQCFYARVRDGGLGLTDL 419          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P16423|POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.406e-16
Identity = 82/314 (26.11%), Postives = 142/314 (45.22%), Query Frame = 3
Query: 4374 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC---GYLQLPNVDMDTVIS----INDIRIKRLESNEFYRYLGV 5294
            ++SPG DGI  +    +     L     N I+    +P S +  +T+  PK     +  D   +RPI++ SV+ +   + LA+RL   I+ +      Q+G    DGC ++ +I+   L HS +   +   IA LD+  AF S+ H  ++  LR  G  +GF   +Q  Y    T  +     +      +GVKQG P+S ILF+L ++ +L  +         +G +     A+ADD+ L A +   LQ + D  +   + +G +   +KC   G    P      + +    +    I  L+  + ++YLG+
Sbjct:  357 SSSPGPDGITPKSAREVPSGIMLRI--MNLILWCGNLPHSIRLARTVFIPKTVTAKRPQD---FRPISVPSVLVRQLNAILATRLNSSINWDPR----QRGFLPTDGCADNATIVDLVLRHS-HKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIG--AKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGI 658          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.281e-14
Identity = 85/313 (27.16%), Postives = 146/313 (46.65%), Query Frame = 3
Query: 4275 WNAIFNFSKRSSVILNLEPFTNDEVMLELK-KADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDK----TIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQK----GGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKIL--AYADDIALVACSVSELQKITDI----AVATAAEIGF 5168
            W+ +   S+R    L   P T DE+   L+    N SPG+DG+    +         L   +++++++      +P S +  + +L+  P K D    + +WRP++LLS  YK+ A  ++ RL     L E++H  Q     G +  D     N  L   L H    T   LA   LD + AF  V H+Y+   L+       F   ++ +Y++           T  +   +GV+QGCP+S  L+SLAI P L  + R      ++ +  ++++  AYADD+ LVA  + +L++  +     A A++A I +
Sbjct:  431 WDGLPVVSERRKERLE-TPITLDELSQALRLMPHNKSPGLDGL---TIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCR--RAVLSLLPKKGD-LRLIKNWRPVSLLSTDYKIVAKAISLRLKS--VLAEVIHPDQSYTVPGRTIFD-----NVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFL-CLLRKRLTGLVLKEPDMRVVLSAYADDVILVAQDLVDLERAQECQEVYAAASSARINW 728          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Match: sp|Q03279|PO21_BRACO (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Bradysia coprophila OX=38358 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.299e-14
Identity = 137/550 (24.91%), Postives = 217/550 (39.45%), Query Frame = 3
Query: 4032 NEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINK-------GILIANFMTDMKSTVNKILNNID------VSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKA---DNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSC-GHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGG 5606
              I+  +  +FPD  K K   Y  +K    H  NK        ++ + +  D+ +    +L+  D        +R  F      F       G  +A  N + R+    ++E   +   ++E+K A   +    G DG+  R    LD   K L   YN  +    +P   K  +T+ TPK +      D   +RP+++ SVI + F   LA R       +E     Q      DG   + S+L+A +  ++    K L IA LD+  AF SV H  +   +   G   G    I  +Y+N  T     G  +  +  I+ GV QG P+S  LF+LA    L A++      F I    V   AY+DD  L+A +V  LQ   D    T A+IG      K   + L     +  + I   R        +K L  ++ ++YLGV   + T   P      +  D   L    L   Q++   K FV      P   + +    LS+        +++   +R   R+ L LP    V + Y+  + GG
Sbjct:   50 GRIMSWLSDRFPDTQKPKGPIY--SKTTIYHGTNKQKRKQRYALVQSLYKKDISAAARVVLDENDKIATKIPPVRHMFDYWKDVFAT-----GGGSAATNIN-RAPPAPHMETLWDPVSLIEIKSARASNEKGAGPDGVTPRSWNALDDRYKRLL--YNIFVFYGRVPSPIKGSRTVFTPKIEGGP---DPGVFRPLSICSVILREFNKILARRFVSCYTYDER----QTAYLPIDGVCINVSMLTAIIAEAK-RLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELAS--ILAGVYQGDPLSGPLFTLAYEKALRALNNEG--RFDIADVRVNASAYSDDGLLLAMTVIGLQHNLDKFGETLAKIGLRINSRKSKTVSLVPSGREKKMKIVSNRRLLLKASELKPLTISDLWKYLGV---VYTTSGPEVAKVSMDDDLSKLTKGPLKPQQRIHLLKTFV-----IP---KHLNRLVLSRTTATGLCKMDLL--IRKYVRRWLRLPGDVPVAFLYAPVKAGG 564          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2VFZ4 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Araneus ventricosus OX=182803 GN=pol_2507 PE=4 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.795e-83
Identity = 270/864 (31.25%), Postives = 399/864 (46.18%), Query Frame = 3
Query: 4158 MTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL----PNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 6722
            +T  +    KI +N+   + P F+K+ S    +S + G        S+  S IL L PFT  EV  +LK A+NTS G D + Y     ++     L  ++N  I  + IP SWK   T+L PK    +     ++WRPIAL S IYK+F  CLA+RLT WI+  E+L   QKG +  DG +EHN +L+ ALE +R    K L +A+LDI +AFGS+PH  ++  L   GV   F  +I  +Y+ +ST        T NI I+ GVKQGCPIS ILF + I+PV+  +  S         S  +ILA+ADDI L+A S  ELQ + D        +  +  P KC    L    P    D+   IN  R+  L+  EF+++LG P+G +   N Y+ L  +    K + +S L  W ++ A K F++    FP RT +       +          I   LR S ++ L LP  +   Y Y   + G      L +E     I   F+LLTSK +  + I+ + LK     R+  K     E L+           +     F   RIA +      Q D       HE ++ I  +    V+        T +   + LC       E  C +   AS+          +F GD + FA + F   AR + LS+   +P+ K     CR C+  + ET+ HVL  CK      + RHD     +   L+ K  +I        L     +R D++      K IF++D+  P  +   +FE   K  L+KYE+L +   T    FK  +   ++GALGS+  K  + LLK+ + RS LK   + C  S++ Q +R  +  H TG
Sbjct: 1076 ITGQEGDFCKIPSNV---LHPYFEKVWS----RSDYDGG--VFVPTSEVRSPILEL-PFTVQEVAKKLKDAENTSAGPDRLTYFHWKSVEGAASFLCNVFNACIHFRKIPPSWKNSTTILLPKSGDPNL---PANWRPIALSSTIYKLFTKCLAARLTNWIEKFEVLSPCQKGFTPFDGVIEHNYVLNRALEDAR-KKRKDLCVAFLDISNAFGSLPHSAIFDGLTACGVGPAFVDIIMDIYTGSSTKVLSESGATENINILSGVKQGCPISGILFDICIDPVIREIQGS--------HSGHRILAFADDICLLAPSAIELQVMLDRINQLFESLNLKLNPAKCVSFHLSGIKPAGVRDSAFYINGTRLVSLKDGEFHKFLGKPIGFNPCPN-YKSLNDLYQAAKAVMESGLSQWMRIDALKSFIYPAFQFPMRTSQFAKKHWHE----------IDRALRKSIKQTLSLPDRASNDYLYGHRKYGSFAIPILAEECELNRIDTAFKLLTSKDEVIKAISLEHLKATVRARMQ-KSSVSDEDLEAYMSATFSDNDNAFSNEFTCARIASARLKVHWQFDEGVPKLKHE-NISINASERKKVLFALRDHFRTGRSNRLLLCPKQGKAME--CVAKSRAST--------HFLFNGDYTSFAVYRFFSSARLDLLSLRGNQPWKKNVDMSCRGCDECDLETLPHVLNHCKGRSRAWTLRHDCVCNRLVKALLPKGKIIARNQDVGPL----GKRPDIVFQ--MGKEIFIIDVTIPFENRYASFESARKAKLDKYEHLVEFYSTN--GFKASVVPILVGALGSWDPKNDKFLLKV-MSRSYLKKFQRLCC-SDVLQWSRDIFIEHVTG 1884          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2L367 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_39 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.571e-82
Identity = 235/810 (29.01%), Postives = 383/810 (47.28%), Query Frame = 3
Query: 4329 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYL----QLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQ----TTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNS-EEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 6722
            PFT  EV ++L+ A NTSPG D I Y D   +    K L  ++N  +  + IP SWKT  T+L PK    +  ++   WRPIAL S +YK+F  CLA+RL+ W +  ++L   QKG + HDG +EHN +L   L+ +R      + IAWLD+ +AFGS+PHE ++ +L   G    F  +I+ +YSN+ST        T +IPI+ GVKQGCPIS I+F + I+PV+  V   +           K+LA+ADD+ L+A S  ELQ       A+   +G    P K   L    + P    ++   I++ +I+ +E  +F+++LG PVG +   + Y+ L  +      L +S L  WQ++ A K F    L FP R  +      ++          I + +R   +  L LP+ +   Y Y+S + G        ++     I   F+LLTSK     ++    L      RL    P+  +  D++ G+        +  +F    +       + +  I +   ++   L     + G + L S  R+    +    L +   DS L + + G    +++ S   S  +      GD + F+ W F+H+ARTNTL +N  KP++K     CR C+  + ET++HVL  CK        RH++    + N L+   +   ++     + P+  +R DL+     +  ++++D+ CP  + +  F       +EKY +L    ++     K  +   ++GALGS+  K    L K  + +S L  L + C    I  S   +  H TG
Sbjct:   69 PFTVKEVKVKLQNAANTSPGPDRITYADWKTIPASVKFLVTVFNACVHFQRIPPSWKTSTTVLLPKSGDPNIPNN---WRPIALSSTMYKMFTKCLAARLSAWCERYDVLSKCQKGFTPHDGVIEHNYVLKNFLDSARRDKTD-VCIAWLDVTNAFGSIPHEAIFEMLSRSGAGLPFTELIRDIYSNSSTKILSDGGLTRDIPILSGVKQGCPISGIIFDMCIDPVIRGVQAEN--------QSHKVLAFADDLCLLANSPEELQLSLSFVNASLKRLGLALNPSKSVALYVSGRTPVGVRNSPFFIDNAQIRNIEEGDFHKFLGKPVGFNPCPD-YKYLSDLAIIATRLLESCLAPWQRIAALKTFFFPALQFPMRNAQFDKEKWAE----------IDAMIRPEIKNTLGLPERACNDYLYASRKVGAVGLPIAAEDADLHRIDTAFKLLTSKDPHVAELALAELLKTVKFRLRKPSPSDSDLGDFMTGE-------ARAAQFDNSNLWTCARRASARQGIRWEFVDNTPRL-----LFGDLTLKSANRKKLLFSLRDRLRLLRGDSLLARPDQGKVMEVVSQSAASSHFMAN----GDYTRFSEWRFVHKARTNTLPLNGNKPWDKTSNTACRGCDECDLETLAHVLNHCKGRSRGWQLRHNSISDRVKNALLF--DGCTLISENQPIGPDG-QRPDLVFR--KRNEVYIIDITCPFENRLEAFTAARNHKIEKYASLVPFFESM--GLKATIIPILVGALGSWDPKNDSFLRK-HMAKSFLHKLQRLCVSETIRWSRDIYVEHVTG 831          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A183CIN3 (Reverse transcriptase domain-containing protein OS=Globodera pallida OX=36090 PE=4 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 6.005e-82
Identity = 244/814 (29.98%), Postives = 401/814 (49.26%), Query Frame = 3
Query: 4329 PFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSW-KTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMD---TVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKT----RFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINA-KPYNKGEKRLCRRCNSEE-ETMSHVLQSCKVHLVLA-SERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKE--RVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYY-HKTG 6722
            PF+  EV   LK+  NT+PG DGI+Y      DP   +L+ ++N     K +P SW K+   LL  K D+++    VS+WRPI+L   I K+ +S LA+RL  W   N+ +   QKG    DGC EHN +L + ++ ++ +  +  ++AWLD+ +AFGS+PH+ +++ LR+ G+SE    +I+ LY+++ T     +  TP I I  GVKQGCP+S I+F+L + P++ A+ R     + +  S   +LAYADD+ALVA S +ELQ++ D+    A   G  +   KC  L L     D   T  S+ +     L   +FY +LGVP G    Q+  ++L+++ +  + +  S L  WQK  A   FV   + F  +   ++   L+           +  ++R+  +K L LP+ + V   Y+S   GG     L        + H +RL+TS+ D +  ++ D LK V   R+  + P   +  D+LNG         + T     + R+R A +  +   +I   ++   +   L +             LR    +   + L    L K + G    + +++       N  +  G+ + FA W FIHRAR + + +NA + +  G+KR CRRC+  + ET+ HVL  C  HL    + RH+  L  +       P+ I  V+ T   VP   E  R DL+  D  KK + ++D+  P  +    FER  +   +KYE L    +     F+V L+  I+G LG +      +L ++ IG+   + L+++  +S+  + +R  Y  H TG
Sbjct:  483 PFSPKEVWERLKRCSNTAPGPDGIRYAVWKKYDPGAHVLSAVFNVAQRLKHVPSSWNKSITVLLHKKGDRQE----VSNWRPISLSDTIGKLHSSVLANRLATWAIANDRISTSQKGFMPVDGCAEHNFVLQSIIQDAKRA-KRHCSVAWLDLTNAFGSIPHQTIFTALRWSGLSETSISIIRRLYASSYTQIRHSNGLTPEILIRAGVKQGCPLSPIIFNLGLEPIIRAI-RCQGVGYKLHGSQTSVLAYADDLALVAESAAELQRMLDVTSKVATWEGLSFNARKCATLDLNGKRKDALNTEFSVQNAHPPVLTIEQFYDHLGVPTGYGVAQSANKVLERMNNHVQKINTSLLAPWQKFDAVNTFVLPCIGFHLKNGVVQKTPLNA----------LDKKIRDFGKKWLNLPQRASVEPLYTSHAMGGMGLTPLNLLADISQLVHAYRLITSR-DLS-SLSMDLLKTVVYKRIR-QAPRPDQISDYLNGSMKGVFRQFESTDTPSAWTRLRQATARLSTKLRIGWKWSAVENRLLLQLNNEQLNPKTAEYCLRAAIREFYRLRL----LAKPDQGKVFAVTSAAT----ASNHFMQAGNFTRFADWRFIHRARLDCVPLNATRRFGHGDKR-CRRCHDGQLETLPHVLCHCWPHLGKGITRRHNAILDRLVKAFKPPPSTITRVNQT---VPGFNEAIRPDLLAVDEEKKTVLIIDVAMPFENRYEAFERCRQGKRQKYEALADHYRLQ--GFEVLLEAFIVGPLGGWDPHNEFVLNQLKIGQ-HYRRLMRKLMVSDAIRWSRDIYIEHITG 1262          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: Q7YXU7 (ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 2.428e-80
Identity = 241/825 (29.21%), Postives = 402/825 (48.73%), Query Frame = 3
Query: 4341 DEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTN--------KPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAV-SRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDT-VISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTRE------IKTYALSKPNGNSNISVNITSQLRNS-----FRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGK------------KTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCD----SYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRW 6704
            D++   +K A  ++ G+D I Y D+ L DP G++L  ++  I+ +   P   K  +T++ PKP K D Y D SSWRPI + S +Y++    L   L  WI LN++L   QK   K +GC +HN++L+  ++  R  TN        K L I +LD  +AFGSVP + +  + +  G+      +I+ LY +  T  +CG  +  N+ + +GVKQGCP+SM+LF++ IN ++ A+ +  D   + +G   ++ILAYADDIAL++ S  +LQ++   A      +G  + P KC  + +P+    T  I +N   IK +   + Y+YLG         +  E+LQ ++ +TK++ +S+L   QK+ AY+ F+HS+L F  R         I     +K   NSN S     +  +      F     LP      +FY + + GG      LDEY  Q+I + FRLL S+      +N+ ++K      L +K      G   +N   +I + +              +T + R+++A      T  I  +  + N    L +T ++   V+L     +   K +H +L      ++L++ +    S ++ S+     ++NK I  G +    W FIHRAR   L       +     LCR+C  ++ETMSH L +C +   L +ERHD     +   L +K    V+   T      ++ R D  IT  S  + +LV++KCP D+  +FE   +   +KY  + + ++   P  +V L T I+G LGS+  + S+ L  +G  + E+  +     + NI  S  +W
Sbjct:  284 DQIAKYIKFASKSAAGLDWITYEDIKLGDPSGEILQPIFEYIVQNNICPSEGKASRTIMIPKPGKSD-YSDPSSWRPITITSAVYRLLMKYLTWELYNWILLNQMLSRSQKSLGKFEGCHDHNAMLNMLIQDVRRQTNPSNPINKNKRLYIVFLDFTNAFGSVPLDTLMYVPQRFGLGTSALTLIKNLYLDNYTNVTCGESKIENVKLNKGVKQGCPLSMLLFNIFINIIIRAIEAMPDVHGYPLGDMDIRILAYADDIALISDSHKDLQEMVYKAEYIGRILGLLFNPSKCALMDIPHDKKRTPPILVNGEMIKCVGKADPYKYLGTFRSWFRKLDIKELLQMMMDETKLITESNLHPHQKIHAYETFIHSQLPFHLRHSRIPFSDFITNRKTNKTTNNSNDSEKSIQKAYDPESGQLFLNTFALPSGCAKDFFYITKDAGGPQLTSGLDEYLIQSIMYIFRLLGSE---DPTLNS-AIKHDLISHLNLK------GFVNINFSQAISIFNSNFTDRTDHFSHLSRTEWARLQLARKKLKSTLAIQTNVCLINGH--LVLTLSLENNVLLIDSKEKGDVKKIHASLMGFLRLAHLIRLQKHGWSKLLFSATTHHEILNKRILNGHVPYKIWYFIHRARLGLLPTKLFSVSN----LCRKCGGKKETMSHALVNCPMMQTLINERHDALEISLVQILSSKFQGTVIRQKTYV----NELRPD--ITMESDTQYYLVEVKCPFDTKMSFELRTQQTTDKYNIIIEILEDVHPGKEVRLVTFIVGTLGSWGPQNSDFLRDLGFSKDEIDQVKTRLMLQNINSSCEQW 1085          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Match: A0A4Y2WK27 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 OS=Araneus ventricosus OX=182803 GN=PO21_22 PE=4 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.130e-78
Identity = 248/849 (29.21%), Postives = 402/849 (47.35%), Query Frame = 3
Query: 4251 IKSPFRGNWNAIF-------NFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTV----ISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDL---LDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNG-----KDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLV---KWESGCTSNIIASSIRLSPMINKAIFRGDLSEFA-WNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEE-ETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCP-SDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTG 6722
            I+  FR  W+++          S+  S IL   PF+ +E+  +L+ A+N+SPG D + Y     L    K +T  +N  +  + +P SWK   T+L PK   +DK DD S+WRPIAL + +YK++   LA RL  W      L   QKG +  DG +EHN +L   LE++R    K L IAWLD+ +AFG++PH+ ++  L   G  E F  VI+ LY++ +T     +  T +IP+  GVKQGCPIS +LF+L I+ +L  +  +         S  +ILA+ADD+ L+  S  ELQ + D+ +    +IG +  P K            TV      +    I+ +   +F ++LG PVG +   + Y          K L  S L  WQKL A K F+   L F  RT + K    S+          +   +R++ +++L LP+H+   Y Y  T +G   CV L    +E     +   F+LLTS  D   ++   +L+     R+  ++ + ++  D+L+G     +D  P  +     +   R+A    +R  +I+  F      T           ++ +S  R+    + +    D  L    K + G     +A     SP+ +  I  G  + F+ + F+HRAR N L +N  P+ +G  + CRRCN  + ET+ HV+  C+ H      RHD     I     N    I+ ++    +V +   R D+++   +K  I+++D+ CP  + +  FER  +  L KY  L + +        V++   ++GALG++     + L+KI + +S LK   K C   NI  +   +  H TG
Sbjct:  206 IEDHFRAAWDSVPLQLPHLDPTSEERSPILE-RPFSINEISKKLQNAENSSPGPDRLTYHHWRSLPQGHKFITAAFNACLFFQKVPPSWKRTTTVLIPK--TKDKLDDPSNWRPIALSNTLYKIYTKVLAGRLQDWSAKYGALSPCQKGFTPFDGVLEHNFVLQTRLEYARLR-KKNLCIAWLDVSNAFGALPHDQIYKALAAAGTGEKFLNVIRDLYTDCATKILTCNTATNSIPLKSGVKQGCPISGLLFNLGIDHILRRIQGN--------ASSHRILAFADDLCLLGDSPEELQDMLDVVLDEMTKIGLKLNPSKSFSFHFSGSTPVTVPPSSFRLGGETIQPILEYQFTKFLGKPVGFNPVPD-YSTFNTFGDCAKKLLASLLSPWQKLDALKSFLFPALQFVMRTGQFKKEDWSQ----------LDDAIRHAVKEVLFLPEHAANDYIYGHTRSG---CVGLPISAEESDLNRVDSAFKLLTSSDDMISELALQNLRSSVSARVR-RDASDEDLSDFLSGSLSIDEDDRPPSNPLSNIWTVARVA----SRRQKIEWMF------TEGMPQLKFQDLILKSSSRRKILFSIRNRLRQDRALALTSKPDQGKAMECVAQ----SPISSHFIANGLYTRFSEYRFVHRARLNLLPLNGLPWKEGPNKGCRRCNKADLETLPHVINHCEAHSRAWQLRHDGVQNRIVTAAQNSRAEIISINKK--VVKSHNLRPDIVLKLDNK--IYIIDVVCPFENRLEGFERAKQEKLRKYSVLIEHLLPQA--SAVEIVPIVVGALGAWDPANEKFLMKI-MSKSYLKTFSKLCVSDNIRWARDIYVEHITG 1006          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034560.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000712.1:195631:202616:-1 gene:ENSAMXG00000042811.1 transcript:ENSAMXT00000034560.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 126.716 bits (317), Expect = 1.491e-28
Identity = 122/460 (26.52%), Postives = 214/460 (46.52%), Query Frame = 3
Query: 4374 NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKC-GYLQLPNVDMDTVISINDIR--------IKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKI------LADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINT 5708
            NT+PG D I  + L   DP G+ L  LY   +    +P ++K  +T L PK   ++  ++V +WRPI + S+I ++F+  +A RL R   +N      Q+G     GC E+  +L   + H +   ++ LA+ ++D   AF S+ HE++ S L    + +    +IQ  Y +  T       ++P+I +  GVKQG  +S ILF+LA++P+++++       + IG S V  LA+ADD+ L++ S   ++    +        G   +  KC G+L        T  ++ND          I  +E +E  +YLGV V      NP+  + K   ++++      +  + L  +QK+     F   RLI+     ++K   L+  +G           +R + +  L LP  +     YS  ++GG   + L     +      +RLL S+ +   +I T
Sbjct:  441 NTAPGPDRITRQMLSDWDPSGEKLERLYTAWMVAGVVPKAFKECRTTLIPKSTSKEALEEVGNWRPITIGSLILRLFSKIMAERLARACPINPR----QRGFISAPGCAENLKVLQGLIGHCKKERSQ-LAVVFVDFARAFDSISHEHILSALGQRQLDQHVIKLIQSAYVDCVTRIIMDGAKSPDILMKVGVKQGDSMSPILFNLAMDPLIQSLENLGS-GYKIGGSSVTTLAFADDLVLLSSSWDGMRSNIALLDEFCERTGLRVQSRKCHGFLIRRGA---TSYTVNDCSPWDLGGEPIHLIEPHEVEKYLGVKV------NPWVGITKPDLNSQLGEWVTRIGGAPLKPYQKVGLLNDFAIPRLIYLADHCDLKGVTLATLDGT----------IRRAVKGWLHLPLSTCGGLLYSRVQDGGLGILKLEALVPSIQARRLYRLLGSEDEIMNQIMT 875          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000034831.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:16211297:16215948:1 gene:ENSAMXG00000034228.1 transcript:ENSAMXT00000034831.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 103.219 bits (256), Expect = 2.244e-21
Identity = 70/236 (29.66%), Postives = 118/236 (50.00%), Query Frame = 3
Query: 4317 LNLEPFTNDEVMLELKKAD-NTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIG-QKGG-SKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEA 5015
            +++ P    EV   +K A   ++PG +G+ YR         K L  L   +     IP  W     +L PK   E     +  +RPI+LL+V  K+F S +A RL  ++  N L+    QK G +   GC+EHNS++   ++ +R +  K L + +LD+ +AFGSVPH  +W    F  V E  + +++  + +    +S G   T    +  G+  GC IS++ F++A+  ++ A
Sbjct:  367 MDVNPPRWSEVQEVVKAAKAGSAPGPNGVPYRSYKSAPDVLKFLWKLMAIVWKKGIIPKEWHRAGGVLIPK---EKDSVAIDQFRPISLLNVEGKIFFSVVARRLATYLKRNNLIDTSVQKAGIAGFSGCIEHNSMIWHQIQTAR-AEKKDLHVVFLDLANAFGSVPHALLWKAFNFFRVPEEISRLVKAYFEDIQFCFSVGECVTSWQRLEIGIMAGCTISLLAFTMAMEVIIRA 598          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000048385.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:135033:139457:1 gene:ENSAMXG00000032036.1 transcript:ENSAMXT00000048385.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 102.449 bits (254), Expect = 2.513e-21
Identity = 84/276 (30.43%), Postives = 140/276 (50.72%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKK-ADNTSPGIDGIQYRDXXXXXXXXXXXXXXY-NKIISD-KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMI---GKSPVKILAYADDIALVACSVSELQKITD 5135
            +P T +E++  +K   D  +PG DG+          E   L   Y N+ +S+ K   D +K+  TL+  K D+    +++ +WR I+LL++ YK+ A  L +RL +   L +++ I Q    K     ++  +L   + ++    +K   I  LD K AF  V  EY+W  L+  G    F  +I++LY  + T  +   I T      +GVKQGCP+S  L+ LAI+P+L  + ++D R   I    K   K+ A+ADDI +V  +  E + +T+
Sbjct:  317 QPITKEEIIEVIKGLHDGKTPGPDGLPAELYKACVNEVINLLQNYFNEGLSEGKMNEDFYKSVITLIYKKGDQ----NELDNWRQISLLNIDYKILAKILMNRLNQ--HLEKIIEIEQTCAVKGRYMWDNLGMLRELILNN---DDKDFYIVSLDQKKAFDFVSREYLWEALQHYGFPPNFIAMIKLLYKKSITQINVNGILTEPFETHRGVKQGCPLSAALYVLAISPLLNKI-KNDTRIKGIKIFDKKSFKLTAFADDITVVIKNQKEFRILTE 582          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000046127.1 (pep primary_assembly:Astyanax_mexicanus-2.0:7:16384999:16389616:1 gene:ENSAMXG00000035718.1 transcript:ENSAMXT00000046127.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 99.3673 bits (246), Expect = 9.993e-21
Identity = 66/205 (32.20%), Postives = 108/205 (52.68%), Query Frame = 3
Query: 4533 KEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWID--LNELLHIGQKGGSKHDG-CVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVK---ILAYADDIALVACSVSELQKI 5129
            K D+Y+ +++WR + L+++ YK+FA  L +RL + +D  +NE    G KG S  D  C+    I +  L  S +       I  LD K AF S+  EY+W++L      + F  +I++LY  ++         T  I I +GVKQGCP+S  L+ LAINP+L ++ + +    +   S +    + A+ADDI +   +  EL  +
Sbjct:  145 KGDEYE-LNNWRQVTLMNIEYKIFAKVLMNRLEKILDKIINEEQTCGIKGRSMWDNLCIIRELITNKHLNESGF------YILALDKKKAFDSISREYLWAVLERYNFPDVFIKMIKLLYLKSTVQVKVNGKLTEKIDICRGVKQGCPLSAALYVLAINPLLTSLKKEEKLTGVYVNSELNKYVVSAFADDITIFIKNQDELNTV 342          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Match: ENSAMXT00000033573.1 (pep primary_assembly:Astyanax_mexicanus-2.0:3:31407009:31410218:-1 gene:ENSAMXG00000030324.1 transcript:ENSAMXT00000033573.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 98.5969 bits (244), Expect = 6.326e-20
Identity = 87/298 (29.19%), Postives = 141/298 (47.32%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKKADNTS-PGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIG-QKGG-SKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCR--PFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQL 5204
            EP    EV   +KKA ++S PG  G+ Y+         + L  +   I     +   W+  + +  PK   E+   ++  +R I+LLSV  K+F S LA RLT ++  N  +    QKGG     GC+EH  +++  +  +R +    LA+ WLD+ +A+GS+PH+ + + L    V    A +I   Y   S   S G I +    +  G+  GC IS+ILF LA+N ++++ + + CR    M G     + A+ DD+ +   SV   + I              ++PEK   L L
Sbjct:  256 EPLLK-EVQDVVKKARSSSAPGPSGVPYKVYKNCPLLLERLWKILKVIWRRGKVARQWRFAEGVWIPK---EEVSKNIDQFRIISLLSVEGKIFFSILARRLTDFLSSNHYIDTSVQKGGIPGVPGCLEHTGVVTQLIREARENKGD-LAVLWLDLANAYGSIPHKLVQTTLERHHVPGQVAELIMNYYDQFSMRVSTGSITSEWHRVEVGIITGCTISVILFVLAMNMLVKS-AETQCRGPKTMTGVRQPPVRAFMDDLTITTESVPGSRWILQGLEELCGWARMRFKPEKSRSLVL 547          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000028058.1 (pep primary_assembly:ASM223467v1:18:21516917:21520645:1 gene:ENSORLG00000027382.1 transcript:ENSORLT00000028058.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 103.605 bits (257), Expect = 2.267e-21
Identity = 116/432 (26.85%), Postives = 194/432 (44.91%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKS----PVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD----TDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNS----NISVNITSQLRNSFRKMLLLPKHS 5567
            +P T DE++  LKK +N  SPG DG+               L  +Y + I  + +  + K     L PKP+K+     + +WRPI LL+V YK+ A   A RL    +L+E++   Q G  K+     +  ++   L++S +  ++ L I +LD   AF +V H ++++ L+  G  E F  + +M Y + S+        +    I + V+QGCPIS   F   I   L ++   +C P ++G S     +KI   ADD AL     +++    D+A++T        G      KC  L + NV  +    I+ I IK + +     YLG+ +  D      QN    ++K+     +    DL  + ++   K    SR+++P         +L  P+  S    N+ VN T + R  + +   L  HS
Sbjct:  455 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKDIKSRQKQNFSLRIKKMQDVMNMWLQRDLSIFGRILLTKAEGISRVVYP-------ALSLFVPDSTSKEINNLLVNFTWKNRRHYLQKEQLYAHS 859          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000036683.1 (pep primary_assembly:ASM223467v1:19:23029986:23032853:-1 gene:ENSORLG00000028041.1 transcript:ENSORLT00000036683.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 101.679 bits (252), Expect = 6.748e-21
Identity = 95/338 (28.11%), Postives = 158/338 (46.75%), Query Frame = 3
Query: 4326 EPFTNDEVMLELKKADN-TSPGIDGIQYRDXXXXXXXXX-XXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIG----KSPVKILAYADDIALVACSVSELQKITDIAVATAAEI----GFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMD 5309
            +P T DE++  LKK +N  SPG DG+               L  +Y + I  + +  + K     L PKP+K+     + +WRPI LL+V YK+ A   A RL    +L+E++   Q G  K+     +  ++   L++S +  ++ L I +LD   AF +V H ++++ L+  G  E F  + +M Y + S+        +    I + V+QGCPIS   F   I   L ++   +C P ++G    +  +KI   ADD AL     +++    D+A++T        G      KC  L + NV  +    I+ I IK + +     YLG+ +  D
Sbjct:  168 DPLTKDELLNALKKMNNGKSPGNDGLSKEFYCHFWDVINPHLMEMYKECIVQQEMTATMKQGLITLIPKPNKDPVM--IENWRPITLLNVDYKILALVYAQRLKS--NLHEIISETQSGFMKNRHISNNIRLILDLLDYSEHIDSEAL-ILFLDFYKAFDTVEHPFLYNALKLFGFGENFISIAKMFYKDISSSILLYPNTSQRFSINRSVRQGCPISPFFF--LIVAELLSLRIKNC-PNLLGLSIFQKEIKITQLADDTALFLKDRNQV----DLAISTINSFSNASGLHLNLGKCEILSIKNVKYE---KIHSIPIKDVVT-----YLGISITKD 485          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000026767.1 (pep primary_assembly:ASM223467v1:20:16240812:16243805:1 gene:ENSORLG00000027933.1 transcript:ENSORLT00000026767.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 1.055e-19
Identity = 77/339 (22.71%), Postives = 154/339 (45.43%), Query Frame = 3
Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450
            +N+I+  + +P+ W+  +++L P    +    + SS+R I L+S   K++   + +RL + +++ E     Q G   H    +    L   +E  R    K L   ++D++ A+  VP E +W  +R  GV+E +  V+Q +Y  + T   C   QT    +  G+ QG  +S  LF++ ++ + + V +         +SP  ++ +ADDI + + S  ++++  +         G +    K  Y+ L   D    + +    +K+++    ++YLG  V  D +    E+ ++V +        + +L D  +    K K YK  V   L++   T
Sbjct:  557 FNRILESEKMPEEWR--RSVLVPIFKNKGDMQNCSSYRGIKLMSHTMKLWERVVEARLRKKVEICEQ----QYGFMPHKSTTDAIFALRMLMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLMDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGTEVKKVQE---FKYLGSTVQCDGECGK-EVKRRVQAGWSGWRKVSGVLCDRRVPARLKGKVYKTVVRPALLYGLET 874          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000041539.1 (pep primary_assembly:ASM223467v1:19:17060561:17061979:-1 gene:ENSORLG00000024322.1 transcript:ENSORLT00000041539.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 95.5153 bits (236), Expect = 1.210e-19
Identity = 77/339 (22.71%), Postives = 153/339 (45.13%), Query Frame = 3
Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450
            +N+I+  + +P+ W+  +++L P    +    + S++R I L+S   K++   + +RL + +++ E     Q G        +    L   +E  R    K L   ++D++ A+  VP E +W  +R  GV+E +  V+Q +Y  + T   C   QT    +  G+ QG  +S  LF++ ++ + + V +         +SP  ++ +ADDI + + S  ++++  +         G +    K  Y+ L   D    + +    +K+++    +RYLG  V  D D    E+ ++V +        + +L D  +    K K YK  V   L++   T
Sbjct:   32 FNRILESEKMPEEWR--RSVLVPIFKNKGDTQNCSNYRGIKLMSHTMKLWERVVEARLRKKVEICE----QQYGFMPRKSTTDAIFALRMLMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLMDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGAEVKKVQE---FRYLGSTVQCDGDCGK-EVKRRVQAGWSGWRKVSGVLCDRRVSARLKGKVYKTVVRPALLYGLET 349          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Match: ENSORLT00000029550.1 (pep primary_assembly:ASM223467v1:10:12459435:12462428:-1 gene:ENSORLG00000024533.1 transcript:ENSORLT00000029550.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 96.6709 bits (239), Expect = 2.442e-19
Identity = 77/339 (22.71%), Postives = 153/339 (45.13%), Query Frame = 3
Query: 4455 YNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSD-------TKILADSDLLGWQKLKAYKIFVHSRLIFPFRT 5450
            +N+I+  + +P+ W+  +++L P    +    + S++R I L+S   K++   + +RL + +++ E     Q G        +    L   +E  R    K L   ++D++ A+  VP E +W  +R  GV+E +  V+Q +Y  + T   C   QT    +  G+ QG  +S  LF++ I+ + + V +         +SP  ++ +ADDI + + S  ++++  +         G +    K  Y+ L   D    + +    +K+++    ++YLG  V  D D    E+ ++V +        + +L D  +    K K YK  V   L++   T
Sbjct:  557 FNRILESEKMPEEWR--RSVLVPIFKNKGDMQNCSNYRGIKLMSHTMKLWERVVEARLRKKVEICEQ----QYGFMPRKSTTDAIFALRMVMEKYR-EGQKELHCVFVDLEKAYDRVPREELWYCMRSSGVAEKYVRVVQDMYERSMTVVRCAVGQTEEFKVEVGLHQGSALSPFLFAMLIDRLTDEVRQ---------ESPWTMM-FADDIVICSESREQVEEQLERWRFALERRGMKVSRSKTEYMCLNERDQGRSVRLQGTEVKKVQE---FKYLGSTVQCDGDCGK-EVKRRVQAGWSGWRKVSGVLCDRRVPARLKGKVYKTVVRPALLYGLET 874          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 3122.41 bits (8094), Expect = 0.000e+0
Identity = 1614/2157 (74.83%), Postives = 1822/2157 (84.47%), Query Frame = 3
Query:  327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743
            TL  + NN     +KN   FKS             +RTL+++EK  LF++FP   + IK KE+  K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS   K     K  I  +KT +++S II S NN+ K+  AS  IK+FL  LS KL+ETATISN K RG Q++  L  +K++  LPDYL+KS IK+ DG+F M+D+LS SD++    TL SS+LSRSQ++DL+  FP++ EL F+E+ + + +   NL+NNLK    FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M   D TL SL  QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + +   TL  ++IE WA SL++ IP  SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI  +NSFL +ID++YPQKA Q   L  LSNNIN IK E+ +  + KAKRFL+FVIRDKKK+L  SKYSYRI   CRKICT NM  HI  I+++LL  L    S++  D+SDS T+ N     E         +V+  ++ T    +  + + L+VDID ++                             +  ++SKSALIS+ETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGN K    KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D +NL KY++LK +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 4090 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVESI---------------------------IHTTISKSALISEETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6215          

HSP 2 Score: 3051.15 bits (7909), Expect = 0.000e+0
Identity = 1593/2161 (73.72%), Postives = 1797/2161 (83.16%), Query Frame = 3
Query:  327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPT--SVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIIS--IVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743
            TL  + NN     +KN   FKS             +RTL+++EK  LF++FP   + IK KE+  K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS   K     K  I  +KT +++S II S NN+ K+  AS  IK+FL  LS KL+ETATISN K R                LPDYL+KS IK+ DG+F M+D+LS SD++    TL SS+LSRSQ++DL+  FP++ EL F+E+ + + +   NL+NNLK    FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M   D TL SL  QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + +   TL  ++IE WA SL++ IP  SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI  +NSFL +ID++YPQKA Q   L  LSNNIN IK E+ +  + KAKRFL+FVIRDKKK+L  SKYSYRI   CRKICT NM  HI  I+++LL  L    S++  D+SDS T+ N     E         +V+  ++ T    +  + + L+VDID ++    +   T + H                      +SKSALISKETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ                I H +   IVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGNK     KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D +NL KY++LK +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 1756 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKQRA---------------LPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVESIIHTTSGTQQNH----------------------ISKSALISKETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3859          

HSP 3 Score: 790.801 bits (2041), Expect = 0.000e+0
Identity = 376/628 (59.87%), Postives = 482/628 (76.75%), Query Frame = 3
Query: 4824 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 6707
            +LL+ + VS  F  ++Q+LY++TS+FY C  +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+  PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA  IGFEYRPEKC Y+Q P V+  + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR   RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL  VT PRLGIK PTL +  +W+NGK+S   HSG+KTRF R+R +I +F+R H I + F I     S+ ITT++ GT I+   LR+T SK+LH AL DSYL KWE    SN++ S+I+L P++NK IFR DL++F W FIHRARTNTLS  AKP+  GE RLCRRC SE+ET+ HVLQ+CK++  LA+ RH+ CL  I + + + P L+VVVDH C+LVP S ERVDLIIT+  KK I LVDMKCP DSV+ F+ +D +NLEKY  LK +IQ  KPD+KV+L TCI+G+LGS  +KT +LLLK+G+  + + GL+KECAISNI  SA+  Y
Sbjct:  901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527          

HSP 4 Score: 577.4 bits (1487), Expect = 9.466e-167
Identity = 363/903 (40.20%), Postives = 540/903 (59.80%), Query Frame = 3
Query: 1719 KAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTL--LTFLNKITXXXXXXXXXXXTVEN-----GIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVD-IDGIQPTSVES--TNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPK-------FMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPD----RVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 4364
            K+KRF+YF++RD KKYL +++   R+ + C K CT  M+  I+ I+  L  +    K     E+D      +EN      IV EE         L +C  ++ ++  N N+ +   +D I  ++P S ES  TN  H  P   T   +     R    +  ++ +  + +   STI     NK L    RDP IWF+D+DID YLE HI +     I CFIV IL +N  E++  IP  +  A+++ CPLNI+ +HWILFVYCK S +SYFIDPIL+ R+  +NK  AL++ +ALN+ FNLK A++++PH+N  YQ N++DCGP+ CAYA++IS    +FPD FID IR++VH+ Q+        + GG   K       F + I +      +  T   L  Q  C+SS++ +Y++     +VLS ELT+N++AQN +FI +NVTF+QF GIDHI+ ++P  ++W LFI+S+ L +S+IF+F+ R + +RLI IG  +T+YLN+F + NR V F++ H+I H++  S D+  FAS FI+L E L++   +   +  + L  +K +   EI   LN IN KI ++I  +YF+ LKL+ +++LLN+T+C AI DDCT+++  FLN E ++KA VIFAII+PPK  E+LL+IDY T+E+Y ++P T       Q  C     KINE++E+ GR +  G   +DIRGSGL+SK+LICAFI+NYA D  L N+NL EIG  ++SL+PI+  S  +      K+       LNL+QRK KI++LL  +S   V+EII  I+   P     + K   +PYLG   N   K N     A F+T+MK+TV +ILN+  V I P FQ+I++NF         W+ +  FSK S  +L L   +++E++  L+
Sbjct:   17 KSKRFIYFLLRDSKKYLIRNQTF-RLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENIDITKPIVIEEIHCMKCNSILEKC--ILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSP--ITENIINPPTKR----TGQRNTVKKQPSKPKSTI----CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIV---GNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1)

HSP 1 Score: 3044.99 bits (7893), Expect = 0.000e+0
Identity = 1588/2157 (73.62%), Postives = 1792/2157 (83.08%), Query Frame = 3
Query:  327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743
            TL  + NN     +KN   FKS             +RTL+++EK  LF++FP   + IK KE+  K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS   K     K  I  +KT +++S II S NN+ K+  AS  IK+FL  LS KL+ETATISN K RG Q++  L  +K++  LPDYL+KS IK+ DG+F M+D+LS SD++    TL SS+LSRSQ++DL+  FP++ EL F+E+ + + +   NL+NNLK    FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M   D TL SL  QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + +   TL  ++IE WA SL++ IP  SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI  +NSFL +ID++YPQKA Q   L  LSNNIN IK E+ +  + KAKRFL+FVIRDKKK+L  SKYSYRI   CRKICT NM  HI  I+++LL  L    S++  D+SDS T+ N     E         +V+  ++ T    +  + + L+VDID ++                                       I   T+ D TI                  WFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGN K    KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D +NL KY++LK +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 4061 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKTEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKVRGEQINNTLNLLKKQRALPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVEINPGTQSGSIVDISVVETGSTEHARVKRRLEVDIDEVES--------------------------------------IIHTTNRDPTI------------------WFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGN-KTRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFHGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 6157          

HSP 2 Score: 3014.94 bits (7815), Expect = 0.000e+0
Identity = 1584/2159 (73.37%), Postives = 1785/2159 (82.68%), Query Frame = 3
Query:  327 TLNDISNN-----KKNVKLFKS-------------ARTLSQNEKGVLFKTFPKFIRLIKLKETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKKDHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLAETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIIS--IVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQ 6743
            TL  + NN     +KN   FKS             +RTL+++EK  LF++FP   + IK KE+  K Q +N+ L +I+P++NPL I G +KFFYRN NICVS++FS   K     K  I  +KT +++S II S NN+ K+  AS  IK+FL  LS KL+ETATISN K R                LPDYL+KS IK+ DG+F M+D+LS SD++    TL SS+LSRSQ++DL+  FP++ EL F+E+ + + +   NL+NNLK    FP++ISFVGGKFIK N+ + S+ SQ EG+SDIMFN+GLLN H+M   D TL SL  QPKSSEK++DI+F+LNYLQLKGEL++T++G+YGDYV NYV NCL +YSI + +   TL  ++IE WA SL++ IP  SYHSSSCKERLLRL+QWKLSSEIDR+HNIISP+TI  +NSFL +ID++YPQKA Q   L  LSNNIN IK E+ +  + KAKRFL+FVIRDKKK+L  SKYSYRI   CRKICT NM  HI  I+++LL  L    S++  D+SDS T+ N     E      + P  +   +               VDI     + VE+ + +H + +R                         +ETDADSTIKIIEINKPLNE+ RDPTIWFTDDDIDLYL+NHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQL CQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ                I H +   IVPNDSNWSLF+FSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTES QSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDII+RQFPDRVKSK+KPYLGNK     KINKGIL+  FMTDMK TV+K+ NN +VSIRPTFQKIV NFLIKSPF+GNWN   NF KRS   LNLE F+N E+M +LK+ADNTSPGIDGIQYRDLLLLDPEGKLLT L+NKII +K IPDSWK+FKTLLTPKP+K+ KYDDVSSWRPIALLSVIYKVFASCLASRLT WI+ N LLHIGQKGGS+HDGCVEHNSILSAALEHS+YS N PLAIAWLDIKDAFGSVPH+YMWSLLRFIGV E F  ++Q+LYS+TSTFYSCG I TPNIPI QGVKQGCPISMILF+LAINPVLEAVSRSDC PFMIG+SPVKILAYADDIAL+A SV +LQKIT+IAV TAAEIGFEYRPEKCGYLQLP V +D+ I IN+ +IK+L S EFY+YLGVPVG + DQ+PY+IL K VSDT+ LA+S+LLGWQKLKAYKIFVHSRLIFPFRTREIKT ALSK NGN+N SVNI+SQLR  FRKML LP  SEV YFY++TE GGANCVDLLDEYHTQTITH FRLLTS+CD+AR+IN DSLKFVTGPRLGIK P+LQE LDW NGK+S P HSG+KTRFQR RIA++FF +TH I +SF + +H+ SLYITTAM GT+ILTSDLR+TTSKVLHMALCDSYL KWE  C SN IAS+++LSP INKAIFR +LSEFAWNFIHRARTNTLSI AK +NKG+KRLCR C++E+ETMSH +QSCKVHL L +ERH++CLKLI + L    NLIVVVDH C+LVPNSKERVDL+ITD+S+K+IFLVDMKCP DSV  FE++D +NL KY++LK +IQ  KPDFKV+LDTC+ G+LGSFP KTSE+L+KIG+ R+ELK LLKECA+SNI  SARRW++HKTG L +P++
Sbjct: 1756 TLRKLKNNNSNIQRKNSPYFKSRNLEKTKFNYQCFSRTLNKSEKLQLFRSFPNLNKKIKTKESVEKFQNLNNELIRITPSKNPLKIDGFLKFFYRNGNICVSINFSVNNKMEPLVKKTI--LKTSIIDSNIITSYNNRLKFTGASTAIKRFLFVLSNKLSETATISNAKQRA---------------LPDYLMKSHIKYHDGDFVMLDLLSDSDLNVGNATLSSSELSRSQMRDLFKSFPELAELFFSES-DCNTDKFKNLINNLKSEHGFPEQISFVGGKFIKLNETKDSDHSQAEGESDIMFNIGLLNFHEMCLKDTTLRSLFSQPKSSEKIIDIIFHLNYLQLKGELKHTSNGSYGDYVCNYVRNCLSLYSISDIETYNTLSLDDIEKWAPSLVKMIPPLSYHSSSCKERLLRLRQWKLSSEIDRLHNIISPETIKHINSFLSEIDKVYPQKATQLKALQNLSNNINAIKSESDDETIAKAKRFLFFVIRDKKKFLLGSKYSYRIPLHCRKICTTNMTTHIFSIIQSLLLTLTVSDSEQIADRSDSITLVNTTQSVE------INPGTQSGSI---------------VDI-----SVVETGSTEHARVKRRL-----------------------EETDADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQ----------------ISHSLEKIIVPNDSNWSLFVFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLIIDYITDEYYIINPTTLCGTESSQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIVRQFPDRVKSKHKPYLGNK-TRPQKINKGILVRKFMTDMKWTVDKVFNNTNVSIRPTFQKIVLNFLIKSPFQGNWNNPLNFCKRSKQALNLELFSNFEIMFQLKRADNTSPGIDGIQYRDLLLLDPEGKLLTFLFNKIIVNKIIPDSWKSFKTLLTPKPNKDGKYDDVSSWRPIALLSVIYKVFASCLASRLTYWINTNNLLHIGQKGGSRHDGCVEHNSILSAALEHSKYSKNCPLAIAWLDIKDAFGSVPHDYMWSLLRFIGVGEDFTSILQLLYSDTSTFYSCGPILTPNIPIKQGVKQGCPISMILFALAINPVLEAVSRSDCEPFMIGESPVKILAYADDIALIAKSVEDLQKITNIAVRTAAEIGFEYRPEKCGYLQLPKVHIDSEILINNTKIKKLLSKEFYQYLGVPVGEEPDQSPYDILDKAVSDTRKLANSELLGWQKLKAYKIFVHSRLIFPFRTREIKTGALSKSNGNNNRSVNISSQLRGCFRKMLCLPNQSEVSYFYNATEKGGANCVDLLDEYHTQTITHFFRLLTSECDYARQINIDSLKFVTGPRLGIKTPSLQESLDWFNGKESKPHHSGRKTRFQRARIAVAFFEKTHNISVSFIVKDHKPSLYITTAMRGTIILTSDLRKTTSKVLHMALCDSYLSKWEKSCVSNFIASAVKLSPKINKAIFRSELSEFAWNFIHRARTNTLSIFAKHHNKGDKRLCRLCHAEDETMSHAIQSCKVHLTLGAERHNDCLKLIASNLTKNSNLIVVVDHVCSLVPNSKERVDLMITDLSRKKIFLVDMKCPCDSVNNFEQVDLLNLRKYDSLKNQIQAVKPDFKVELDTCVFGSLGSFPLKTSEILVKIGVKRTELKPLLKECALSNIAHSARRWHFHKTGILVDPEK 3830          

HSP 3 Score: 788.875 bits (2036), Expect = 0.000e+0
Identity = 376/628 (59.87%), Postives = 482/628 (76.75%), Query Frame = 3
Query: 4824 SLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWY 6707
            +LL+ + VS  F  ++Q+LY++TS+FY C  +QTP+IPI +GVKQGCPISMILF++AINPVLEA+S S+  PFMIG S V++LAYADDIAL+A + S+LQ + D+AV TA  IGFEYRPEKC Y+Q P V+  + I +N++ IK+L SNEFY+YLGVP+G + DQ+PYEI+ KV+ DTK +A S+L GWQKLKAYKIF+HSRLIFPFRTREIKT +L+ P+ NS I+VN TSQLR   RK+L LP HSE+ YFY+STENGGA C+DLLDEYH QTI + FRLLTS C +++ INT SL  VT PRLGIK PTL +  +W+NGK+S   HSG+KTRF R+R +I +F+R H I + F I     S+ ITT++ GT I+   LR+T SK+LH AL DSYL KWE    SN++ S+I+L P++NK IFR DL++F W FIHRARTNTLS  AKP+  GE RLCRRC SE+ET+ HVLQ+CK++  LA+ RH+ CL  I + + + P L+VVVDH C+LVP S ERVDLIIT+  KK I LVDMKCP DSV+ F+ +D +NLEKY  LK +IQ  KPD+KV+L TCI+G+LGS  +KT +LLLK+G+  + + GL+KECAISNI  SA+  Y
Sbjct:  901 TLLKHMNVSAEFVNILQLLYTDTSSFYQCNQMQTPDIPIKKGVKQGCPISMILFAIAINPVLEAISLSNTTPFMIGTSSVQVLAYADDIALIATNSSDLQTLFDLAVNTANMIGFEYRPEKCAYIQYPKVETVSEIIVNNVLIKKLASNEFYQYLGVPIGDNNDQSPYEIVSKVIEDTKKIAHSNLYGWQKLKAYKIFLHSRLIFPFRTREIKTSSLADPSRNSRINVNNTSQLRGHLRKILNLPNHSEISYFYNSTENGGAGCIDLLDEYHAQTIVYFFRLLTSTCGYSKTINTFSLLSVTSPRLGIKNPTLSQSFEWINGKESKLNHSGRKTRFHRLRTSIEYFSRVHNIKLLFEIFKQNPSIRITTSLTGTRIILPKLRKTLSKILHSALQDSYLSKWEMSNHSNLLVSAIKLCPLVNKLIFRSDLTDFEWKFIHRARTNTLSTFAKPHKAGEDRLCRRCKSEDETILHVLQTCKINQSLATNRHNACLIKIKDSIKD-PELLVVVDHKCSLVPTSSERVDLIITNTEKKTILLVDMKCPIDSVSNFQLVDNLNLEKYAKLKLDIQAVKPDYKVELHTCIMGSLGSIESKTEDLLLKMGVQPNRIIGLMKECAISNIAHSAKICY 1527          

HSP 4 Score: 575.859 bits (1483), Expect = 3.227e-166
Identity = 363/903 (40.20%), Postives = 540/903 (59.80%), Query Frame = 3
Query: 1719 KAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTL--LTFLNKITXXXXXXXXXXXTVEN-----GIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVD-IDGIQPTSVES--TNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGGLPK-------FMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPD----RVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK 4364
            K+KRF+YF++RD KKYL +++   R+ + C K CT  M+  I+ I+  L  +    K     E+D      +EN      IV EE         L +C  ++ ++  N N+ +   +D I  ++P S ES  TN  H  P   T   +     R    +  ++ +  + +   STI     NK L    RDP IWF+D+DID YLE HI +     I CFIV IL +N  E++  IP  +  A+++ CPLNI+ +HWILFVYCK S +SYFIDPIL+ R+  +NK  AL++ +ALN+ FNLK A++++PH+N  YQ N++DCGP+ CAYA++IS    +FPD FID IR++VH+ Q+        + GG   K       F + I +      +  T   L  Q  C+SS++ +Y++     +VLS ELT+N++AQN +FI +NVTF+QF GIDHI+ ++P  ++W LFI+S+ L +S+IF+F+ R + +RLI IG  +T+YLN+F + NR V F++ H+I H++  S D+  FAS FI+L E L++   +   +  + L  +K +   EI   LN IN KI ++I  +YF+ LKL+ +++LLN+T+C AI DDCT+++  FLN E ++KA VIFAII+PPK  E+LL+IDY T+E+Y ++P T       Q  C     KINE++E+ GR +  G   +DIRGSGL+SK+LICAFI+NYA D  L N+NL EIG  ++SL+PI+  S  +      K+       LNL+QRK KI++LL  +S   V+EII  I+   P     + K   +PYLG   N   K N     A F+T+MK+TV +ILN+  V I P FQ+I++NF         W+ +  FSK S  +L L   +++E++  L+
Sbjct:   17 KSKRFIYFLLRDSKKYLIRNQTF-RLFETCNKYCTSEMSQQISLIITKLKPIVINVKDVDLIEQDCDLDKPIENIDITKPIVIEEIHCMKCNSILEKC--ILVREGMNVNICENCLLDAISVVEPDSNESNQTNSNHDSP--ITENIINPPTKR----TGQRNTVKKQPSKPKSTI----CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHRNQMEIV---GNLIGGAKTKMDMSSFNFKKAIAKTKYSNNNPNTSNILKSQMPCVSSIICKYYENNCKVSVLSAELTLNLIAQNNSFIADNVTFKQFKGIDHILCVIPKFNDWCLFIYSIKLKHSHIFDFNYRTIDDRLIEIGVKITDYLNQFCL-NRNVKFLANHHISHSTFLSYDTQYFASHFIVLFEKLVYEIHLDCDKVYDSLSKIKTETCIEISPGLNLINGKITDKIIFEYFNKLKLSDDYILLNKTLCVAISDDCTQYMKDFLNIECMMKANVIFAIISPPKVHELLLVIDYSTEEHYYLSPVTTDLNVVSQHFCYNILIKINELRESKGRAMKTGHCRHDIRGSGLLSKILICAFIRNYALDYSLENINLHEIGKIVNSLVPIVDGSDNVKYEKREKLKAANTLKLNLKQRKEKINQLLIKLSDSDVDEIICTILTNIPRLENLQKKEFREPYLGKNHNKPKKFNNP---AEFLTNMKTTVYRILNDQSVKIEPPFQEIINNFTHPDVVPECWDNVLKFSKISDELLELTYISSEEILSNLQ 899          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1)

HSP 1 Score: 2053.1 bits (5318), Expect = 0.000e+0
Identity = 1113/1946 (57.19%), Postives = 1408/1946 (72.35%), Query Frame = 3
Query:  873 DGEFTMIDILSKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAE--NIEKSPETXXXXXXXXXXXXXFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLNLHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQXXXXXXXXXXXXXXXLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSCKERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYNILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDXXXXXXXXXXXXRIIQQCRKICTPNMAGHITDILKTLLTFLNKITXXXXXXXXXXXTVENGIVPEETILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHTKPQRTTRQTVAKTK*RCVPASVSKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGG---LPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSA 6695
            DG+F M+D+L+  +++  E+  + ++LSRSQ+K+L+  FP+I EL F E  +I+++PE LINL+N  K+ + FP++ISFVGGKF+K +K+  S+  Q E +SDIMFNLGL +L  +SE DN L SLLCQPKS EKLVDI+F+LNYL LKG    +T+GTY +YV NY++NCLL++SI++ +    L  +NIE WA  LIE IPS+S++SSSCKE+LL+L+QWKLS EIDRIHNII P+TI E+N+FL  ID+ Y  K+ Q   LT L   IN+I+++    DL KAKR LYF+IRDKK++L+K  ++Y I   CRKICT  M+            F+ K+    E  +   + V+N I          + P             NENLN ++   ++ + PT                            P +V        ETDADSTI    IN    E  RD  IWFTDDDID YLE+HI +  FA + CFIVEIL +N  +++FP+P+ +FKAQIILCPLNI+++HWILFVYCK +  SYF+DPIL+ RH  +NK+ AL++TMALN LF+LKAA+TFHPH+N +YQ+N+YDCGPYICAYAM+IS  WQ+FP++FI+ IRK VH+ Q +  Q   KVSGGG   LP F          K +   +A L  +NSC+ SL+ E+F  +   TVLSPELT+N++A N  FIRENVTFRQFT + ++I+++PN+ +W L+IFS V   SYI NF  R++ ERL++IGE+MT+YLNKF IS  KV FI  HN  H S  S+D   FASAFI  +E   F   +S T+ +E LKS K++  NEIC NLN IN  IN+EI  KYF NL L SNF+ LN  MCTAI+DDCTR+L  FLNY+++IKAQVIFAI+APPK REIL IIDY TDEYY++NPTTL G ++Y S C+I RNKINEI+E+P RV+N+G+ P+DIRGSGLVSK+L C+++ NYANDLPL+ LNLR+IG  +SS LPI SE KK+   +   I +  K + NL++RK KID+LL  V  + V+EI+D+I+ Q   +    +KPYLGN +    +INK  LI NF +DMK+TVN I+N++DV +RP ++ I++NF  K P    W+ +F F  RS   L L+  +N EV+ ELKKADNTSPG+DGI+YRD+++LDPEGKLLT L+NKIIS K IPDSWK+FKTLL PKP K DKYD VSSWRPIALLSVIYK+FASCLA+RLT WI+ N LLHIGQKGGS+HDGCVEHNSILS+ALEHS+YS N  LAIAWLDIKDAFGSVPH YMWSLLRF+G+   F+                                                     RS C PFMIG+S VKILAYADDIALV+ S  +LQ++T+IAV  A+EIGFEYRPEKCGY++LP ++ ++ I INDI+IKRL S+EFY+YLGVPVG +TDQ+PY+IL+KVVSDT+ +ADSDLLGWQKLKAYKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENGGANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI  PTLQE  DW+NGK+               ++ I    + H I+I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IAS+I+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L    NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++  F  +D +NL+KY++LK +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SA
Sbjct:  199 DGDFLMLDLLNSFEIE-GELGQKITELSRSQIKELFNSFPEIQELFFIEKKSIDENPEKLINLINKFKIEETFPQQISFVGGKFVKIDKLNDSQFPQVESESDIMFNLGLFSLFGLSEYDNILNSLLCQPKSPEKLVDIIFHLNYLNLKGNFDTSTNGTYENYVQNYIVNCLLMHSILDLETCAFLNLDNIELWAPKLIELIPSSSHYSSSCKEKLLKLKQWKLSGEIDRIHNIICPETIIEINNFLGVIDQSYTTKSDQLKFLTCLGEKINNIEIDNDVDDLVKAKRMLYFIIRDKKRFLNKDNFNYHIPFNCRKICTLKMSD-----------FITKLIQSNELFEEREAVVDNNI---------DVSP-------------NENLNILI---VEPVNPT----------------------------PDTVIV------ETDADSTI----INYFFPE--RDSKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEWFSNKNYITVLSPELTLNLIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCLYIFSPVFERSYILNFQGRVLNERLVSIGESMTDYLNKFFISTAKVNFIVNHNQTHFSFRSEDPHFFASAFIEFLERFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDEYYLLNPTTLLGNDNYLSACKILRNKINEIRESPNRVLNLGECPHDIRGSGLVSKILFCSYMSNYANDLPLVGLNLRQIGNVVSSFLPIASEIKKVKSLENNIINENHKESENLKERKNKIDQLLIKVFKMNVDEIVDVILDQISIKTVPTHKPYLGNIERVESQINKSNLIKNFNSDMKTTVNTIINDVDVDVRPKYENIITNFEHKIPLDRTWDKVFKFCNRSDKKLKLKYLSNSEVLFELKKADNTSPGVDGIKYRDMVMLDPEGKLLTFLFNKIISKKVIPDSWKSFKTLLIPKPGKGDKYDSVSSWRPIALLSVIYKLFASCLANRLTFWINKNNLLHIGQKGGSRHDGCVEHNSILSSALEHSKYSKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGLMRNFSI----------------------------------------------------RSKCEPFMIGESAVKILAYADDIALVSKSAYDLQRVTNIAVVIASEIGFEYRPEKCGYIELPLIETESQILINDIKIKRLASSEFYQYLGVPVGEETDQSPYDILKKVVSDTRKIADSDLLGWQKLKAYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGGANCVDLLDEYHTQTITHFFRLFTSNCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINGKEP--------------KLGI---LKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKIQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSA 1998          

HSP 2 Score: 504.212 bits (1297), Expect = 1.664e-144
Identity = 232/331 (70.09%), Postives = 279/331 (84.29%), Query Frame = 3
Query: 5736 RLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTL 6728
            RLGI  PTLQE  DW+NGK+  P HSGKKTRFQR RIAI+FF + H I+I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE GCTSN IAS+I+LSP INKAI+RGD+SEFAW+FIHRARTNTLSINAKP+NKG KRLCR C++E+ETMSH++QSCK+HL L SERH++CL LI++ L    NLIVVVDH C+LVP SKERVDL+ITD+ +K+IFLVDMKCP D++  F  +D +NL+KY++LK +IQ AKPDFKV+LDTCIIG+LGSFP KT ELLLKIG+ R+ LKGLLK+CA+SNI+ SARRW+YHKTG L
Sbjct: 2052 RLGIINPTLQETFDWINGKEPKPWHSGKKTRFQRARIAIAFFKKEHDINIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGCTSNFIASAIKLSPKINKAIYRGDISEFAWHFIHRARTNTLSINAKPHNKGNKRLCRLCHTEDETMSHIIQSCKIHLTLGSERHNDCLDLISSHLSKNSNLIVVVDHVCSLVPESKERVDLMITDMVRKKIFLVDMKCPCDTINNFALVDLLNLQKYDSLKMQIQDAKPDFKVELDTCIIGSLGSFPPKTPELLLKIGVDRTHLKGLLKDCALSNISHSARRWHYHKTGIL 2382          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1)

HSP 1 Score: 1312.75 bits (3396), Expect = 0.000e+0
Identity = 713/1316 (54.18%), Postives = 880/1316 (66.87%), Query Frame = 3
Query: 2169 SKSALISKETDADSTIKIIEINKPLNEAVRDPTIWFTDDDIDLYLENHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLSCQQKDQKVSGGG---LPKFMEIIKRNGVRKTSSATQAFLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQFTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENMTEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISD---KTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIF 6098
            S S  IS+ETDADSTI      +      RDP IWFTDDDID YLE+HI +  FA + CFIVEIL +N  +++FP+P+ +FKAQIILCPLNI+++HWILFVYCK +  SYF+DPI +  H  +NK+ AL++TMALN LF+LKAA+TFHPH+N +YQ+N+YDCGP+ICAYAM+IS  WQ+FP++FI+ IRK VH+ Q S  Q   KVSGGG   LP F          K +   +A L  +NSC+ SL+ E F  +   TVLSPELT+N +A N  FIRENVTFRQFT + ++I+++PN+ +W L                 + + ERL++IGE+MT+Y NKF IS  KV FI  HN  H S  S+D   FASAFI  +E   F   +S T+ +E LKS K++  NEIC NLN IN  IN+EI  KYF NL L SNF+ LN  MCTAI+DDCTR+L  FLNY+++IKAQVIFAI+APPK REIL IIDY TDE Y++NPTTL G ++Y S C+I RNKINEI+E+P RV+N+G+ P DIRGSGLVSK+L C+++                  +N ++ LP++                     LNL Q    +   L  VS +         ++   + + ++N     N K   +KI++ +LI  F  ++   V+ I + I +   PT +          P+  N   + +   +S++I N   F +D     +K   NT                            II+D     IPDSWK+FKTLL  KP K DKYD VSSWRPIALLSVIYK+F SCLA+RLT  I+ N LLHIGQKG S+HDGCVEHNSILS+ALEHS+Y  N  LAIAWLDIKDAFGSVPH YMWSLLRF+GV E F  +I+ + S+ STFYSCG I TPNI I QGVKQGCPISMILF+LAINPVLEA+SRS C PFMIG+S VKILAYADDIALV+ S  +LQ++T+IAVA A+EIGFEYR EKCGY++L                  L S +                     +KVVSDT+ +ADSDLLGWQKLK YKIF+HSRL+FPFRTREIKT AL+K N N+N++VNITSQLRN FRKM+ LP HSEVCYFY+STENG ANCVDLLDEYHTQTITH FRL TS C+FARK+N DSL FV GPRLGI  PTLQE  DW+N K+  P HS KKTRFQR RIAI+FF + H I I F +T  + SL+IT+   GT ILT DLR+TTSKVLHMALCDSYL KWE G TSN IAS+I+LSP INKAI+
Sbjct:   69 SISVSISEETDADSTINYYFFPE------RDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPIFRKWHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPHICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSGGGITTLPIFKRFQNVTRPPKVALPYKASLQNENSCVPSLIKEGFSNKNYITVLSPELTLNFIAHNNQFIRENVTFRQFTRVKYVIAVIPNNPHWCL-----------------QSLNERLVSIGESMTDYPNKFFISTAKVNFIVNHNQIHFSFRSEDPHFFASAFIEFLEKFFFGNILSFTKINETLKSFKLQITNEICKNLNLINFSINDEIITKYFKNLNLPSNFIFLNSAMCTAIMDDCTRYLNDFLNYDNIIKAQVIFAIVAPPKFREILFIIDYNTDECYLLNPTTLLGNDNYLSTCKILRNKINEIRESPNRVLNLGECPYDIRGSGLVSKILFCSYM------------------SNYANDLPLVG--------------------LNLRQIDSVVSSFLPIVSEIKN-------VKSLENNIINENHKESENLKERKNKIDQ-LLIKVFKMNVDEIVDVIFDQISIKTVPTHK----------PYLDNKERVESQINKSNLIKN---FNSD-----MKTTVNT----------------------------IINDVDVDVIPDSWKSFKTLLIQKPSKGDKYDSVSSWRPIALLSVIYKLFTSCLANRLTFCINKNNLLHIGQKGDSRHDGCVEHNSILSSALEHSKYGKNSQLAIAWLDIKDAFGSVPHAYMWSLLRFVGVDEEFVTIIERMDSDKSTFYSCGPILTPNIAIRQGVKQGCPISMILFALAINPVLEAISRSKCEPFMIGESTVKILAYADDIALVSKSAYDLQRVTNIAVAIASEIGFEYRSEKCGYIEL------------------LLSKQ---------------------KKVVSDTRKIADSDLLGWQKLKTYKIFLHSRLVFPFRTREIKTSALAKSNANNNLTVNITSQLRNCFRKMMSLPNHSEVCYFYNSTENGMANCVDLLDEYHTQTITHFFRLFTSSCEFARKVNLDSLNFVAGPRLGIINPTLQETFDWINVKELKPRHSCKKTRFQRARIAIAFFKKEHDIYIMFIVTKGQPSLFITSEKRGTFILTPDLRKTTSKVLHMALCDSYLSKWEKGRTSNFIASAIKLSPKINKAIY 1230          
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Match: SMESG000079542.1 (SMESG000079542.1)

HSP 1 Score: 1076.23 bits (2782), Expect = 0.000e+0
Identity = 591/1162 (50.86%), Postives = 778/1162 (66.95%), Query Frame = 3
Query: 3249 SDDSLLFASAFIILIESLIFSKQVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSNFMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHRXXXXXXXXXXXXXXXXNPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIPNDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESKKILMSDLTKITKIKKSN--LNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQFPDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSIRPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELKKADNTSPGIDGIQYRDXXXXXXXXXXXXXXYNKIISDKTIPDSWKTFKTLLTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHIGQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHEYMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGCPISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVSELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLESNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKIFVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKHSEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDSLKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFARTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSYLVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSINAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITNRLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSVTTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSELLLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTL 6728
            SDD +  AS FI+ +E  I    V+  +  E L +++ K  +E+ +NLN  NCKI E++   +F NL L+ NF+ LN TM TAIL+DCT++L +FLN E+L+KA+++FAIIAPPK R+IL+IIDY +DEYY++NP++L     Y         KINEIKETP     +G+ P+DIRGSGLVS++LICAFIK+YA DL L N+NLR+IG  I SLLP + +    ++ D  K     K+N  L L+QR L I+E L  + +  VNE+ + I +    + K K                     ++F  +MK+TV KIL N +++ RPT +  + NF  + P   +++ + NF  +S   L L P  + EV+ ELK+ADNTSPGIDGI+Y D+ + D EGKLLTLLYNKII++ T+PD WK+FKTL+TPKPDK DKY+ +SSWRPIALLSV+YK+FAS L+ RLT W++ N LLHIGQKGGS HDGCVEHNS+LS+ LEHS+YS + P+ IA+LDIKDAFGSVPH+YMW +LR IGV E F   +++LY+ TS++Y+CG I TPNIPI QGVKQGCP+SMILF++AINPVL+AV+ S  +PF +G+S +++LAYADDIAL+A +  +LQ I +IA   A EIGFEYRP+KC Y+QLPNV+                           +   T+Q+PYEIL KVVSD K LADSDL GWQKLKAYK F+HSRL FPFRTR+ K  ALS     +N+  N T++LR+  RKM+ LP +SE+ YFY+S ENGGA+C DLLDEYHTQTI++ FRL T+ C+F ++IN DSLKFVTGPRLG   P+LQ+  +W+N  D I  HSGKK RF R R AI FF +TH I ISF + + +  L +TTA+ GT+ILT   R+  SKVLH+AL DSY  KW++   SNII                                             E RLCRRC+++++T+ HVLQ+CKVHL LA  RH++CL+ I + L   P+LIVVVDHTC+LV NSKERVDLIIT+  KK I +VD+KCP DS+ TFE ++K NL KY++LKK+IQ AKP F VD+ TCIIG++GS+     +LL K+G+   ++               A  W+YH TG L
Sbjct:    3 SDDPIHHASTFILFLEEFISGNVVNRDKVIEKLVNMQSKMCDEVVVNLNLKNCKITEKLLTNFFINLNLSENFIFLNNTMTTAILNDCTQYLNEFLNIENLMKAKIVFAIIAPPKARQILMIIDYTSDEYYLLNPSSLLPNFPYLCTANSLLTKINEIKETPELCKLLGNCPHDIRGSGLVSRILICAFIKHYALDLSLENINLRDIGNVIKSLLPTVQD----IIKDSIKNLSDNKTNVKLKLDQRILLINENLLTLQNANVNEMRNKISKVPHPKTKFK---------------------SSFNQNMKTTVYKILVNDEINERPTIKDHIGNFSHQDPLIKSYDNVLNFGLKSQNTLLLRPIIDKEVIFELKRADNTSPGIDGIKYNDIAIHDAEGKLLTLLYNKIITENTMPDVWKSFKTLMTPKPDKGDKYNLISSWRPIALLSVVYKIFASILSRRLTSWVNRNNLLHIGQKGGSVHDGCVEHNSVLSSCLEHSKYSKDTPIIIAFLDIKDAFGSVPHDYMWKILRHIGVGEKFTNTLKLLYTETSSYYTCGPIVTPNIPIKQGVKQGCPLSMILFAIAINPVLQAVTLSKVKPFKVGESSIQVLAYADDIALIANNTHDLQNILNIAFDVAREIGFEYRPKKCAYIQLPNVET--------------------------ISEHTNQSPYEILNKVVSDAKKLADSDLCGWQKLKAYKTFLHSRLTFPFRTRDFKISALS-----ANVCNN-TTKLRSHLRKMMSLPNNSEISYFYNSVENGGASCTDLLDEYHTQTISYFFRLFTANCEFTKRINIDSLKFVTGPRLGNNNPSLQDSFNWINKADIIQKHSGKKPRFFRPRTAIQFFEKTHNITISFEVLDDKPILRLTTALKGTIILTEFDRRLVSKVLHLALYDSYFTKWKN---SNII---------------------------------------------ENRLCRRCHNQDKTLPHVLQNCKVHLTLALNRHNDCLQQIVHHL-KSPSLIVVVDHTCSLVSNSKERVDLIITNNEKKTILMVDIKCPFDSLVTFETVNKENLAKYDSLKKQIQAAKPSFTVDIFTCIIGSMGSY-----DLLGKMGVPFEKV---------------ALSWHYHVTGVL 1038          
The following BLAST results are available for this feature:
BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
BX649434.35.974e-2127.66pep chromosome:GRCz11:3:18270043:18274691:-1 gene:... [more]
BX547930.46.072e-2129.39pep chromosome:GRCz11:20:12830448:12834749:1 gene:... [more]
CABZ01033394.13.332e-2024.48pep chromosome:GRCz11:13:6032844:6038477:-1 gene:E... [more]
CU462878.33.565e-2027.33pep chromosome:GRCz11:17:8542203:8545189:1 gene:EN... [more]
si:dkeyp-88h4.23.730e-2028.30si:dkeyp-88h4.2 [Source:ZFIN;Acc:ZDB-GENE-131121-1... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
slc7a18.966e-2232.38solute carrier family 7 (cationic amino acid trans... [more]
ENSXETT00000024583.15.790e-1930.54pep primary_assembly:Xenopus_tropicalis_v9.1:2:942... [more]
ENSXETT00000002428.17.164e-1932.71pep primary_assembly:Xenopus_tropicalis_v9.1:3:159... [more]
sulf11.375e-1828.09sulfatase 1 [Source:Xenbase;Acc:XB-GENE-966419][more]
ENSXETT00000037748.11.612e-1828.09pep primary_assembly:Xenopus_tropicalis_v9.1:KV460... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q03278|PO21_NASVI4.303e-2526.62Retrovirus-related Pol polyprotein from type-1 ret... [more]
sp|Q03274|PO22_POPJA3.096e-1724.34Retrovirus-related Pol polyprotein from type-1 ret... [more]
sp|P16423|POLR_DROME1.406e-1626.11Retrovirus-related Pol polyprotein from type-2 ret... [more]
sp|P14381|YTX2_XENLA1.281e-1427.16Transposon TX1 uncharacterized 149 kDa protein OS=... [more]
sp|Q03279|PO21_BRACO9.299e-1424.91Retrovirus-related Pol polyprotein from type-1 ret... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4Y2VFZ47.795e-8331.25Retrovirus-related Pol polyprotein from type-2 ret... [more]
A0A4Y2L3671.571e-8229.01Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A183CIN36.005e-8229.98Reverse transcriptase domain-containing protein OS... [more]
Q7YXU72.428e-8029.21ORF2 (Fragment) OS=Girardia tigrina OX=6162 PE=4 S... [more]
A0A4Y2WK277.130e-7829.21Retrovirus-related Pol polyprotein from type-1 ret... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000034560.11.491e-2826.52pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000034831.12.244e-2129.66pep primary_assembly:Astyanax_mexicanus-2.0:3:1621... [more]
ENSAMXT00000048385.12.513e-2130.43pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
ENSAMXT00000046127.19.993e-2132.20pep primary_assembly:Astyanax_mexicanus-2.0:7:1638... [more]
ENSAMXT00000033573.16.326e-2029.19pep primary_assembly:Astyanax_mexicanus-2.0:3:3140... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000028058.12.267e-2126.85pep primary_assembly:ASM223467v1:18:21516917:21520... [more]
ENSORLT00000036683.16.748e-2128.11pep primary_assembly:ASM223467v1:19:23029986:23032... [more]
ENSORLT00000026767.11.055e-1922.71pep primary_assembly:ASM223467v1:20:16240812:16243... [more]
ENSORLT00000041539.11.210e-1922.71pep primary_assembly:ASM223467v1:19:17060561:17061... [more]
ENSORLT00000029550.12.442e-1922.71pep primary_assembly:ASM223467v1:10:12459435:12462... [more]
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BLAST of Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000021486.19.466e-16774.83SMESG000021486.1[more]
SMESG000021486.13.227e-16673.62SMESG000021486.1[more]
SMESG000044750.11.664e-14457.19SMESG000044750.1[more]
SMESG000078596.10.000e+054.18SMESG000078596.1[more]
SMESG000079542.10.000e+050.86SMESG000079542.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022861 ID=SMED30022861|Name=Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2|organism=Schmidtea mediterranea sexual|type=transcript|length=7160bp
CCAACTTAAAAATTACAATTAAAAATAATACAAATAAAGTAAAATTTAAT
TTTCCTGAAATTGAGAGGGATGATTTGAGTTTGATTGAGTCGGGTGACTT
GAACAAAATTTCAAATGATGATTTTGAAAGTCAAATTGTAAATAAAATTA
GTGGTAATTATTCCAAAGGATTAGATAATTCTAAACTAGAAGTTGACAGA
GGAAATAAAATTGAAAAATCTTATAAAGTTCAAAGTGAAAGAACTTTTGC
AAATAATAATAACAAAAATTTTCAATCTTTAAATAAAAATCAGAAAAACA
GTAAAAATTCAAAATTTGGAAAGAATACTCTTAACGATATTTCTAATAAT
AAGAAAAATGTTAAGCTTTTCAAATCTGCTAGAACTTTAAGCCAAAATGA
GAAAGGTGTTCTTTTTAAAACTTTTCCCAAATTCATTAGGCTTATTAAGT
TAAAAGAAACTTCGAGCAAGCACCAAGAGATAAATTCTATGCTTTCTAAG
ATAAGTCCAACTGAAAATCCATTAAACATTTCAGGTCTTGTGAAATTTTT
CTATAGAAATCACAACATTTGTGTTTCTTTGGATTTCTCGAATGCCAAGA
AGGACCATAAATCTGAGAAACCGCAAATTAATCCAGTCAAGACCTTTCTG
GTAGAGTCCGGCATTATAAAATCTAACAATAACCAGAATAAGTATGTTTC
TGCCTCCCAAATTATTAAGAAATTTTTATGTGCTCTATCACCGAAGTTAG
CTGAGACAGCTACAATATCAAATACAAAATTTAGGGGGATACAAGTACAT
AAAATACTAAAAGAAATGAAACAACGTGGTGAACTTCCCGACTACCTGAT
AAAGTCACAAATTAAATTTTCCGATGGGGAATTTACCATGATTGACATAT
TAAGTAAGTCTGACGTTGATGACAGCGAAATAACATTGAGATCATCAGAT
CTTAGTCGATCACAACTGAAAGACTTATACGGCGAATTCCCGGATATTCT
GGAACTGTGTTTTGCTGAAAACATAGAAAAATCTCCAGAAACCTTAATTA
ACTTATTAAATAATTTAAAATTAAATAAGAACTTTCCCAAAGAGATCTCA
TTTGTGGGGGGAAAATTTATTAAATTCAACAAAATTCAAAGCTCGGAGGT
CTCACAACCTGAAGGTAAGTCCGATATAATGTTTAATCTTGGGTTATTGA
ACCTTCACAAAATGTCGGAGAATGACAACACATTGATGTCTCTTTTGTGC
CAGCCAAAATCGTCTGAAAAGCTGGTTGACATAGTTTTTTACTTGAATTA
CTTGCAATTGAAGGGAGAGCTGCAATATACTACAGATGGAACCTATGGTG
ATTATGTTTACAATTATGTGCTTAATTGTCTATTAATTTATTCCATAATT
AATCGAGACAAACAGTGCACACTTCTACCAGAGAACATTGAAAGTTGGGC
AGGTAGCTTAATTGAAAAGATACCATCTACATCATACCATAGCTCCAGCT
GTAAAGAACGACTCCTTAGACTCCAACAATGGAAACTTTCTAGTGAGATT
GATAGAATACACAACATCATCTCTCCTAAAACCATAACTGAAGTAAATAG
CTTTCTTGACAAAATAGACGAGCTCTATCCACAAAAAGCTGCTCAGTATA
ACATTCTTACGAAATTGAGCAACAACATCAACGATATAAAGGTTGAGACT
CTCGAGGCTGACCTAAATAAAGCTAAAAGATTTCTCTATTTTGTTATAAG
AGACAAAAAGAAATACTTATCTAAAAGCAAGTATTCATACCGTATAATCC
AACAGTGCAGAAAGATTTGTACACCAAATATGGCTGGGCACATTACAGAC
ATACTGAAGACTCTGTTGACATTTCTGAATAAGATCACCAGCGATGAGGA
AAAAGACAAATCCGACTCTAGCACCGTAGAAAATGGCATTGTACCCGAGG
AGACAATATTAAAGAACTCACTTCAACCTCTAGTCGAATGTGATATGTTG
ATTACTCAAGATAACACCAATGAGAACTTAAATCAAATGCTGCAAGTTGA
CATTGATGGAATCCAACCAACCTCTGTAGAGTCCACAAATGAACAACATA
CAAAACCACAAAGGACGACTAGACAAACTGTTGCCAAGACTAAATGAAGG
TGCGTGCCTGCATCAGTCTCAAAATCTGCTCTAATCTCTAAGGAGACTGA
TGCAGACAGCACAATAAAAATCATCGAAATAAATAAACCTCTAAATGAAG
CAGTTCGTGATCCTACAATTTGGTTTACTGATGATGATATTGATCTTTAC
CTAGAAAATCACATCAGTAGCCTTGAGTTTGCGTCCATAAATTGTTTCAT
CGTTGAGATTTTGCGCACTAACCCTGGTGAAGATCTTTTTCCAATCCCGG
AAAAGGTTTTCAAAGCGCAAATAATTTTATGCCCTTTAAATATTGACAAA
ACTCACTGGATCTTGTTTGTATATTGTAAGAACTCCTTGACATCTTACTT
TATTGATCCAATCCTTCAATATCGGCATCGGTTTGTCAACAAAACATATG
CACTTCAAGTTACAATGGCATTGAATCAGCTTTTCAATCTTAAAGCTGCC
ATGACCTTCCACCCACATGAAAATTTCTTATACCAAGAAAATAGTTACGA
CTGTGGGCCTTACATCTGTGCTTACGCAATGATGATAAGTGGAGTTTGGC
AAAGCTTTCCTGACCATTTTATTGACATCATCAGAAAGGAGGTTCACCAA
CTTCAACTCTCCTGTCAACAGAAAGATCAAAAGGTTTCAGGAGGTGGCCT
ACCGAAATTCATGGAAATCATCAAACGGAATGGGGTCAGGAAGACTAGCA
GTGCTACCCAGGCTTTTCTCCTTAAACAGAATTCGTGTATTTCATCCCTA
TTAGATGAATACTTCAAAACGAGAACCAATACGACTGTTCTATCTCCAGA
ACTAACAATGAACATTGTCGCCCAAAACCTCACATTCATTAGAGAAAATG
TGACATTCAGACAATTCACTGGAATAGATCACATCATCAGTATTGTCCCA
AATGACTCGAATTGGAGTCTGTTTATTTTCTCTCTTGTGTTAGGGAACAG
TTACATTTTCAACTTCCATGACAGAATAGTAACGGAAAGACTAATTGCCA
TTGGAGAAAATATGACTGAATACCTCAACAAATTCATCATCTCCAATAGA
AAAGTGATCTTCATTAGCGAACACAACATCGAACACGCTTCCATCACATC
TGACGACTCACTTCTCTTTGCTTCTGCTTTCATTATATTAATCGAAAGTC
TTATTTTTAGCAAACAGGTTTCCCACACAAGAACCAGTGAGTTTCTAAAA
TCAGTTAAAATTAAACAAGCAAATGAGATCTGTTTGAATTTAAACTCAAT
AAACTGTAAAATCAACGAGGAAATAACTGCAAAATATTTTAGTAATTTAA
AACTAAATTCAAACTTTATGCTACTAAATGAGACAATGTGCACTGCTATT
CTTGATGATTGCACACGACATTTGACCAAATTTTTAAATTATGAGGATCT
CATTAAAGCACAAGTAATATTCGCCATAATTGCGCCCCCTAAACATCGAG
AAATTCTTTTGATAATAGACTATATTACTGATGAATACTACATCATCAAC
CCTACTACTCTGTGTGGAACAGAGAGTTATCAATCAGTCTGCAGAATTTT
TCGAAATAAAATCAACGAGATTAAGGAAACACCTGGGCGCGTCATAAACA
TGGGTGATATTCCCAATGACATTCGTGGATCTGGTCTTGTGAGTAAACTA
CTCATCTGCGCTTTCATTAAAAATTATGCTAATGATTTACCCCTGATTAA
CTTAAACTTGCGCGAGATAGGTACCAACATCAGCTCTTTACTTCCAATCA
TCAGTGAATCGAAAAAAATTCTAATGTCAGATTTGACTAAAATCACAAAA
ATAAAAAAGAGCAACCTGAACTTGGAACAACGTAAACTCAAGATTGACGA
ACTTCTCCACGATGTTTCTCACCTGACAGTCAATGAAATCATTGATATTA
TTATAAGGCAATTCCCTGACCGTGTAAAATCAAAAAACAAGCCGTATTTG
GGTAATAAAAAAAACACTGCGCATAAAATCAATAAAGGTATATTAATTGC
CAATTTTATGACTGACATGAAATCAACAGTCAACAAAATTCTCAATAACA
TAGATGTTAGCATCCGTCCAACATTCCAGAAAATTGTTTCAAATTTCCTA
ATAAAATCTCCTTTTCGTGGAAATTGGAATGCAATTTTCAATTTCAGCAA
ACGTTCCAGCGTAATACTTAATCTTGAACCTTTCACAAATGATGAAGTGA
TGCTTGAACTCAAGAAAGCTGACAATACAAGTCCGGGTATTGATGGAATA
CAATATCGTGATTTGTTGCTTCTTGATCCCGAGGGTAAATTACTAACCTT
ATTGTATAATAAAATCATTTCTGATAAGACCATACCAGACAGTTGGAAGA
CTTTCAAAACACTTCTAACTCCTAAACCTGATAAAGAAGATAAATATGAT
GATGTATCATCTTGGCGTCCAATTGCCTTGCTTTCTGTCATCTATAAAGT
TTTCGCTTCTTGTTTAGCAAGTCGTTTGACAAGATGGATAGACTTGAATG
AACTTTTACACATTGGCCAGAAAGGCGGCTCTAAACACGATGGATGTGTT
GAGCATAATTCGATTCTTTCTGCTGCATTAGAACACTCCAGATACAGCAC
CAACAAACCCCTTGCTATTGCTTGGCTTGATATAAAAGATGCCTTTGGCA
GTGTTCCCCACGAATACATGTGGTCTTTACTCCGATTTATTGGAGTGAGT
GAGGGATTTGCATATGTTATCCAGATGTTATACTCCAATACGAGCACTTT
CTATAGTTGTGGCCACATTCAAACTCCAAACATTCCTATCGTACAAGGAG
TCAAACAAGGATGCCCTATCTCCATGATCTTGTTTTCTTTGGCTATCAAT
CCAGTACTTGAAGCGGTATCGCGATCTGATTGTAGACCGTTTATGATTGG
AAAATCTCCAGTCAAGATTCTCGCATACGCTGATGACATCGCTCTTGTTG
CTTGCTCTGTTAGTGAACTTCAAAAGATTACTGACATAGCTGTTGCAACT
GCAGCTGAGATAGGGTTTGAATATCGCCCTGAAAAGTGTGGATATCTTCA
ACTGCCAAATGTTGACATGGACACTGTAATTTCAATCAACGACATTCGAA
TTAAAAGGCTAGAATCTAATGAATTCTATCGATATCTTGGAGTGCCTGTA
GGCATGGACACTGATCAAAATCCATATGAAATTCTCCAAAAGGTAGTTTC
TGACACGAAAATACTTGCTGATTCTGACCTACTTGGCTGGCAAAAACTAA
AGGCTTATAAGATCTTTGTTCATTCACGTTTGATCTTTCCTTTTAGAACT
CGAGAGATTAAGACTTACGCTCTTTCTAAACCAAATGGAAATAGTAATAT
TTCTGTCAATATAACCAGCCAACTTAGAAATAGCTTTAGAAAAATGCTAC
TTCTGCCAAAGCATTCTGAAGTATGCTATTTCTATAGTTCTACTGAGAAT
GGCGGAGCAAATTGTGTAGATCTTCTTGACGAATATCACACTCAGACGAT
AACACACTGTTTTCGATTACTAACATCAAAGTGTGACTTTGCTAGAAAGA
TCAACACTGATTCATTGAAATTTGTTACTGGACCTCGTCTTGGGATAAAA
GAACCGACTCTTCAAGAAGGTCTTGATTGGCTTAATGGAAAAGATTCTAT
ACCACTGCATTCTGGAAAGAAAACTCGATTTCAAAGAGTCAGAATTGCAA
TATCGTTCTTTGCAAGAACTCATCAAATTGACATATCATTCGCTATCACA
AACCATGAAACATCCCTCTACATAACCACAGCAATGCATGGAACTGTGAT
TTTGACTTCTGATCTACGTCAGACCACTTCAAAAGTCTTACATATGGCAC
TTTGTGATTCATATCTTGTTAAATGGGAAAGCGGTTGCACTTCTAACATC
ATAGCTTCATCAATCAGACTTTCGCCCATGATAAATAAAGCAATATTTCG
CGGTGATTTATCTGAATTCGCTTGGAACTTTATTCATCGAGCTCGCACAA
ACACTCTCTCAATCAATGCGAAGCCTTATAATAAAGGTGAAAAGAGACTT
TGTCGTCGGTGTAACAGTGAAGAGGAGACAATGTCACACGTACTTCAATC
GTGTAAGGTCCACCTAGTTCTTGCATCCGAGCGACACGACAACTGTCTCA
AATTAATAACAAATCGCCTAATGAATAAACCTAATCTAATCGTTGTAGTA
GATCACACCTGCGCACTTGTTCCGAATTCCAAAGAACGAGTTGACTTGAT
AATCACTGATGTGTCGAAAAAGAGAATCTTTCTTGTTGACATGAAATGTC
CGAGCGACTCTGTCACTACTTTTGAACGAATAGACAAGGTTAACTTGGAA
AAATATGAAAATTTAAAGAAAGAAATACAGACTGCCAAACCTGACTTCAA
AGTCGACCTTGACACATGTATTATTGGAGCCTTAGGATCTTTTCCTGCAA
AAACCTCTGAACTCCTTTTGAAAATAGGAATTGGTCGCTCAGAACTGAAA
GGTCTACTAAAAGAATGTGCGATAAGTAACATCACACAATCTGCACGAAG
GTGGTACTACCACAAGACTGGCACTCTGTCAGAACCTGATCAAATAAATT
TCAAATAAATATAAATAAAATGCAATAAAAAAATTCCTGTTAGCATTAGC
ATTGTCAAACTATTTGTGTATATTTATGTATTTTCTATGTATATATCTAA
AATTTTAGATGTTCCTCTTTCCCAATAAATGTTTTATATATGTATATATA
TATAGTTTTGCTAACAGGCTTTTGCACTTTGCAAAAGTTTATTTTAGAAT
CTGTATGCTGGTTATTCATTCCTCAATTCACCGCCATCAATGAAGAGCCA
ACATACAATGCCGGAGTTTGATTTCCGATGACAATATCAGAAAAGCCGAG
GACAATTCAGAAGATTGATAAATAACTTGAGTCAAAATGATCCCAAACAA
TTCTTTGATTAAAAATCTTTCTGACTCTTTTATTTATGTAAATCTTCCGA
ATGGCGTGCC
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protein sequence of SMED30022861-orf-1

>SMED30022861-orf-1 ID=SMED30022861-orf-1|Name=SMED30022861-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1398bp
MALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPD
HFIDIIRKEVHQLQLSCQQKDQKVSGGGLPKFMEIIKRNGVRKTSSATQA
FLLKQNSCISSLLDEYFKTRTNTTVLSPELTMNIVAQNLTFIRENVTFRQ
FTGIDHIISIVPNDSNWSLFIFSLVLGNSYIFNFHDRIVTERLIAIGENM
TEYLNKFIISNRKVIFISEHNIEHASITSDDSLLFASAFIILIESLIFSK
QVSHTRTSEFLKSVKIKQANEICLNLNSINCKINEEITAKYFSNLKLNSN
FMLLNETMCTAILDDCTRHLTKFLNYEDLIKAQVIFAIIAPPKHREILLI
IDYITDEYYIINPTTLCGTESYQSVCRIFRNKINEIKETPGRVINMGDIP
NDIRGSGLVSKLLICAFIKNYANDLPLINLNLREIGTNISSLLPIISESK
KILMSDLTKITKIKKSNLNLEQRKLKIDELLHDVSHLTVNEIIDIIIRQF
PDRVKSKNKPYLGNKKNTAHKINKGILIANFMTDMKSTVNKILNNIDVSI
RPTFQKIVSNFLIKSPFRGNWNAIFNFSKRSSVILNLEPFTNDEVMLELK
KADNTSPGIDGIQYRDLLLLDPEGKLLTLLYNKIISDKTIPDSWKTFKTL
LTPKPDKEDKYDDVSSWRPIALLSVIYKVFASCLASRLTRWIDLNELLHI
GQKGGSKHDGCVEHNSILSAALEHSRYSTNKPLAIAWLDIKDAFGSVPHE
YMWSLLRFIGVSEGFAYVIQMLYSNTSTFYSCGHIQTPNIPIVQGVKQGC
PISMILFSLAINPVLEAVSRSDCRPFMIGKSPVKILAYADDIALVACSVS
ELQKITDIAVATAAEIGFEYRPEKCGYLQLPNVDMDTVISINDIRIKRLE
SNEFYRYLGVPVGMDTDQNPYEILQKVVSDTKILADSDLLGWQKLKAYKI
FVHSRLIFPFRTREIKTYALSKPNGNSNISVNITSQLRNSFRKMLLLPKH
SEVCYFYSSTENGGANCVDLLDEYHTQTITHCFRLLTSKCDFARKINTDS
LKFVTGPRLGIKEPTLQEGLDWLNGKDSIPLHSGKKTRFQRVRIAISFFA
RTHQIDISFAITNHETSLYITTAMHGTVILTSDLRQTTSKVLHMALCDSY
LVKWESGCTSNIIASSIRLSPMINKAIFRGDLSEFAWNFIHRARTNTLSI
NAKPYNKGEKRLCRRCNSEEETMSHVLQSCKVHLVLASERHDNCLKLITN
RLMNKPNLIVVVDHTCALVPNSKERVDLIITDVSKKRIFLVDMKCPSDSV
TTFERIDKVNLEKYENLKKEIQTAKPDFKVDLDTCIIGALGSFPAKTSEL
LLKIGIGRSELKGLLKECAISNITQSARRWYYHKTGTLSEPDQINFK*
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protein sequence of SMED30022861-orf-2

>SMED30022861-orf-2 ID=SMED30022861-orf-2|Name=SMED30022861-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=715bp
NLKITIKNNTNKVKFNFPEIERDDLSLIESGDLNKISNDDFESQIVNKIS
GNYSKGLDNSKLEVDRGNKIEKSYKVQSERTFANNNNKNFQSLNKNQKNS
KNSKFGKNTLNDISNNKKNVKLFKSARTLSQNEKGVLFKTFPKFIRLIKL
KETSSKHQEINSMLSKISPTENPLNISGLVKFFYRNHNICVSLDFSNAKK
DHKSEKPQINPVKTFLVESGIIKSNNNQNKYVSASQIIKKFLCALSPKLA
ETATISNTKFRGIQVHKILKEMKQRGELPDYLIKSQIKFSDGEFTMIDIL
SKSDVDDSEITLRSSDLSRSQLKDLYGEFPDILELCFAENIEKSPETLIN
LLNNLKLNKNFPKEISFVGGKFIKFNKIQSSEVSQPEGKSDIMFNLGLLN
LHKMSENDNTLMSLLCQPKSSEKLVDIVFYLNYLQLKGELQYTTDGTYGD
YVYNYVLNCLLIYSIINRDKQCTLLPENIESWAGSLIEKIPSTSYHSSSC
KERLLRLQQWKLSSEIDRIHNIISPKTITEVNSFLDKIDELYPQKAAQYN
ILTKLSNNINDIKVETLEADLNKAKRFLYFVIRDKKKYLSKSKYSYRIIQ
QCRKICTPNMAGHITDILKTLLTFLNKITSDEEKDKSDSSTVENGIVPEE
TILKNSLQPLVECDMLITQDNTNENLNQMLQVDIDGIQPTSVESTNEQHT
KPQRTTRQTVAKTK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0008234cysteine-type peptidase activity
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain-like_cys_pep_sf
IPR003653Peptidase_C48_C
IPR000477RT_dom
Vocabulary: biological process
TermDefinition
GO:0006508proteolysis
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILYSSF54001Cysteine proteinasescoord: 3..55