RNA-binding protein 26

Overview
NameRNA-binding protein 26
Smed IDSMED30022791
Length (bp)2779
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding protein 26 (SMED30022791) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein 26 (SMED30022791) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein 26 (SMED30022791) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein 26 (SMED30022791) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022791

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30022791SMESG000027877.1 SmedASXL_014673SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30022791SMESG000027877.1 SmedASXL_014673SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
protonephridiaSMED30022791SMESG000027877.1 dd_Smed_v4_5418_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30022791SMESG000027877.1 dd_Smed_v4_5418_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Human
Match: RBM27 (RNA binding motif protein 27 [Source:HGNC Symbol;Acc:HGNC:29243])

HSP 1 Score: 88.1965 bits (217), Expect = 4.565e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPLLEPVKPEP 88

HSP 2 Score: 62.7734 bits (151), Expect = 3.119e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            L +  IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  602 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 669
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Human
Match: AC091959.3 (novel readthrough transcript)

HSP 1 Score: 88.1965 bits (217), Expect = 5.099e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPLLEPVKPEP 88

HSP 2 Score: 62.3882 bits (150), Expect = 3.723e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            L +  IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  547 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 614
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Human
Match: RBM26 (RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327])

HSP 1 Score: 85.5001 bits (210), Expect = 2.815e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 6.771e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+ 
Sbjct:  534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIKV 601
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Human
Match: RBM26 (RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327])

HSP 1 Score: 85.5001 bits (210), Expect = 2.834e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 6.822e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 600
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Human
Match: RBM26 (RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327])

HSP 1 Score: 85.5001 bits (210), Expect = 3.003e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 6.710e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 600
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Celegans
Match: rbm-26 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A2K5ATS7])

HSP 1 Score: 82.0333 bits (201), Expect = 1.136e-15
Identity = 71/266 (26.69%), Postives = 104/266 (39.10%), Query Frame = 2 
Query:  701 CPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVEN-SQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSAIXXXXXXXXXXXXXXXXXXQGSARCLL-LTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            C DF E+G C++G+ C + HG+D V  D N + S   +P    N               F++  P +N L   N           + N      + Y    P I G  +   +        YVP  V + SQ   +  +       +  G  +    I    G  R     AI R                     C L +  IP E N  A+L +HF TFG V  +QV + G+   ALV +A+   A  A++SP P+L+NRFI+ 
Sbjct:  212 CKDFEERGYCIRGDQCPYYHGRDPVVVDENALGSMVPLPATAPN---------------FSLPPPGYNPL---NPPPPGVVVAAGEYNPEAPALNNYSIPPPPIPGQWQQPHVAAQ-----YVPQSVSSYSQPPPAAAQGVVTQPGSFRGAPRGRGNIRGRGGFARGGFTGAINRD-------------------NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKV 435

HSP 2 Score: 73.9442 bits (180), Expect = 3.552e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKK-DKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M I+N D    WL +EL+ +++ADP  L+KYV+AL+KK DK    L+    +QL+VFL++ T  F+D VFE L  K Y+
Sbjct:    1 MHIDNEDALFDWLSDELSPITDADPNALAKYVLALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYM 79
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Celegans
Match: rbm-26 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A2K5ATS7])

HSP 1 Score: 82.0333 bits (201), Expect = 1.136e-15
Identity = 71/266 (26.69%), Postives = 104/266 (39.10%), Query Frame = 2 
Query:  701 CPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVEN-SQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSAIXXXXXXXXXXXXXXXXXXQGSARCLL-LTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            C DF E+G C++G+ C + HG+D V  D N + S   +P    N               F++  P +N L   N           + N      + Y    P I G  +   +        YVP  V + SQ   +  +       +  G  +    I    G  R     AI R                     C L +  IP E N  A+L +HF TFG V  +QV + G+   ALV +A+   A  A++SP P+L+NRFI+ 
Sbjct:  212 CKDFEERGYCIRGDQCPYYHGRDPVVVDENALGSMVPLPATAPN---------------FSLPPPGYNPL---NPPPPGVVVAAGEYNPEAPALNNYSIPPPPIPGQWQQPHVAAQ-----YVPQSVSSYSQPPPAAAQGVVTQPGSFRGAPRGRGNIRGRGGFARGGFTGAINRD-------------------NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKV 435

HSP 2 Score: 73.9442 bits (180), Expect = 3.427e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKK-DKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M I+N D    WL +EL+ +++ADP  L+KYV+AL+KK DK    L+    +QL+VFL++ T  F+D VFE L  K Y+
Sbjct:    1 MHIDNEDALFDWLSDELSPITDADPNALAKYVLALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYM 79
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Celegans
Match: rbm-26 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A2K5ATS7])

HSP 1 Score: 80.1073 bits (196), Expect = 4.742e-15
Identity = 72/266 (27.07%), Postives = 103/266 (38.72%), Query Frame = 2 
Query:  701 CPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVEN-SQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSAIXXXXXXXXXXXXXXXXXXQGSARCLL-LTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            C DF E+G C++G+ C + HG+D V  D N + S   +P    N               F+ S P     PL N           + N      + Y    P I G  +   +        YVP  V + SQ   +  +       +  G  +    I    G  R     AI R                     C L +  IP E N  A+L +HF TFG V  +QV + G+   ALV +A+   A  A++SP P+L+NRFI+ 
Sbjct:  212 CKDFEERGYCIRGDQCPYYHGRDPVVVDENALGSMVPLPATAPN---------------FSCSLPPPGYNPL-NPPPPGVVVAAGEYNPEAPALNNYSIPPPPIPGQWQQPHVAAQ-----YVPQSVSSYSQPPPAAAQGVVTQPGSFRGAPRGRGNIRGRGGFARGGFTGAINRD-------------------NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKV 437

HSP 2 Score: 73.9442 bits (180), Expect = 3.524e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKK-DKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M I+N D    WL +EL+ +++ADP  L+KYV+AL+KK DK    L+    +QL+VFL++ T  F+D VFE L  K Y+
Sbjct:    1 MHIDNEDALFDWLSDELSPITDADPNALAKYVLALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYM 79
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Celegans
Match: rbm-26 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:A0A2K5ATS7])

HSP 1 Score: 73.9442 bits (180), Expect = 3.128e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKK-DKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M I+N D    WL +EL+ +++ADP  L+KYV+AL+KK DK    L+    +QL+VFL++ T  F+D VFE L  K Y+
Sbjct:    1 MHIDNEDALFDWLSDELSPITDADPNALAKYVLALVKKPDKGHDELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYM 79

HSP 2 Score: 66.6254 bits (161), Expect = 5.657e-11
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L +  IP E N  A+L +HF TFG V  +QV + G+   ALV +A+   A  A++SP P+L+NRFI+ 
Sbjct:  303 TLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKV 371
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Fly
Match: swm (gene:FBgn0002044 transcript:FBtr0331326)

HSP 1 Score: 62.3882 bits (150), Expect = 2.137e-9
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKL 343
            M++EN D    WL   L  L +AD   L++YVIALLKKDKS+  L++I ++QL VFLSE+T +F++ +F+ +  ++Y+       T P   LI   +    +L
Sbjct:    1 MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFVERLFDAIASEEYL-------TVPAAPLITASSASTAEL 96

HSP 2 Score: 60.8474 bits (146), Expect = 5.586e-9
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L L  +P   N  A L  HF  FGK+  +QV ++GD   A+V F+T   A  A+RS   +L+NRFI+ 
Sbjct:  563 SLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPEAAIVTFSTHAEANVAYRSTEAVLNNRFIKV 631
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Fly
Match: swm (gene:FBgn0002044 transcript:FBtr0331325)

HSP 1 Score: 62.3882 bits (150), Expect = 2.137e-9
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKL 343
            M++EN D    WL   L  L +AD   L++YVIALLKKDKS+  L++I ++QL VFLSE+T +F++ +F+ +  ++Y+       T P   LI   +    +L
Sbjct:    1 MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFVERLFDAIASEEYL-------TVPAAPLITASSASTAEL 96

HSP 2 Score: 60.8474 bits (146), Expect = 5.586e-9
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L L  +P   N  A L  HF  FGK+  +QV ++GD   A+V F+T   A  A+RS   +L+NRFI+ 
Sbjct:  563 SLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPEAAIVTFSTHAEANVAYRSTEAVLNNRFIKV 631
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Fly
Match: swm (gene:FBgn0002044 transcript:FBtr0081244)

HSP 1 Score: 62.003 bits (149), Expect = 2.211e-9
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKL 343
            M++EN D    WL   L  L +AD   L++YVIALLKKDKS+  L++I ++QL VFLSE+T +F++ +F+ +  ++Y+       T P   LI   +    +L
Sbjct:    1 MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFVERLFDAIASEEYL-------TVPAAPLITASSASTAEL 96

HSP 2 Score: 60.8474 bits (146), Expect = 5.584e-9
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L L  +P   N  A L  HF  FGK+  +QV ++GD   A+V F+T   A  A+RS   +L+NRFI+ 
Sbjct:  562 SLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPEAAIVTFSTHAEANVAYRSTEAVLNNRFIKV 630
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Fly
Match: swm (gene:FBgn0002044 transcript:FBtr0081245)

HSP 1 Score: 62.003 bits (149), Expect = 2.211e-9
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKL 343
            M++EN D    WL   L  L +AD   L++YVIALLKKDKS+  L++I ++QL VFLSE+T +F++ +F+ +  ++Y+       T P   LI   +    +L
Sbjct:    1 MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFVERLFDAIASEEYL-------TVPAAPLITASSASTAEL 96

HSP 2 Score: 60.8474 bits (146), Expect = 5.584e-9
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L L  +P   N  A L  HF  FGK+  +QV ++GD   A+V F+T   A  A+RS   +L+NRFI+ 
Sbjct:  562 SLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPEAAIVTFSTHAEANVAYRSTEAVLNNRFIKV 630
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Zebrafish
Match: rbm27 (RNA binding motif protein 27 [Source:ZFIN;Acc:ZDB-GENE-110411-31])

HSP 1 Score: 91.2781 bits (225), Expect = 3.079e-18
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFK 286
            M+I+NVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  LR +C DQL VFL ++T  F+D +FECL  K Y+     K
Sbjct:    1 MIIDNVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELRALCADQLDVFLQKETTGFVDKLFECLTTKNYLGPPAVK 84

HSP 2 Score: 55.4546 bits (132), Expect = 2.992e-7
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  IP E N+  +L +HF  FG +  +QV F GD   AL+++  ++ A  A  S   +L+NRFIR
Sbjct:  562 LEVRRIPRELNNITKLNEHFSKFGTIVNIQVVFGGDPEAALIQYTANDEARRAISSTEAVLNNRFIR 628
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Zebrafish
Match: rbm26 (RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50])

HSP 1 Score: 89.7373 bits (221), Expect = 1.048e-17
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            M+IEN++   +WL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F+D +FE +  K Y+ + E
Sbjct:    1 MIIENLEALKTWLSKTLEPICDADPSALAKYVVALVKKDKSEKELKALCIDQLDVFLQKETQTFVDKLFEAVNAKSYLPQPE 82

HSP 2 Score: 63.929 bits (154), Expect = 9.152e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  IP E N+ ++L QHF  FG +  +QV +  D   AL++FAT E A  A +S   +L+NRFIR
Sbjct:  540 LAIGQIPPELNNISKLNQHFSKFGTIVNLQVAYNNDPEGALIQFATPEEARRAIQSTEAVLNNRFIR 606
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Zebrafish
Match: rbm26 (RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50])

HSP 1 Score: 89.7373 bits (221), Expect = 1.048e-17
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            M+IEN++   +WL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F+D +FE +  K Y+ + E
Sbjct:    1 MIIENLEALKTWLSKTLEPICDADPSALAKYVVALVKKDKSEKELKALCIDQLDVFLQKETQTFVDKLFEAVNAKSYLPQPE 82

HSP 2 Score: 63.929 bits (154), Expect = 9.152e-10
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  IP E N+ ++L QHF  FG +  +QV +  D   AL++FAT E A  A +S   +L+NRFIR
Sbjct:  540 LAIGQIPPELNNISKLNQHFSKFGTIVNLQVAYNNDPEGALIQFATPEEARRAIQSTEAVLNNRFIR 606
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Match: c1qtnf12 (C1q and TNF related 12 [Source:Xenbase;Acc:XB-GENE-5726440])

HSP 1 Score: 90.1225 bits (222), Expect = 9.908e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            MLIENVD F +WL   L  + +ADP  L+ YVIAL+KKDKSE  L+ IC DQL VFL ++T  F+D +F+ L  K Y+
Sbjct:    1 MLIENVDAFKTWLAKLLEPICDADPMALANYVIALVKKDKSEKELKAICADQLDVFLQKETNGFVDKMFDSLHTKVYL 78

HSP 2 Score: 60.8474 bits (146), Expect = 1.031e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            IP + N+  +L +HF  FG +  +QV FQGD   AL+++ T++ A  A  S   +L+NRFIR
Sbjct:  549 IPQDLNNITKLNEHFSKFGTIVNIQVAFQGDPEGALIQYLTNDEARRAISSTEAVLNNRFIR 610
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Match: c1qtnf12 (C1q and TNF related 12 [Source:Xenbase;Acc:XB-GENE-5726440])

HSP 1 Score: 90.1225 bits (222), Expect = 1.052e-17
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            MLIENVD F +WL   L  + +ADP  L+ YVIAL+KKDKSE  L+ IC DQL VFL ++T  F+D +F+ L  K Y+
Sbjct:    1 MLIENVDAFKTWLAKLLEPICDADPMALANYVIALVKKDKSEKELKAICADQLDVFLQKETNGFVDKMFDSLHTKVYL 78

HSP 2 Score: 60.8474 bits (146), Expect = 9.502e-9
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            IP + N+  +L +HF  FG +  +QV FQGD   AL+++ T++ A  A  S   +L+NRFIR
Sbjct:  549 IPQDLNNITKLNEHFSKFGTIVNIQVAFQGDPEGALIQYLTNDEARRAISSTEAVLNNRFIR 610
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:407926])

HSP 1 Score: 79.7221 bits (195), Expect = 1.523e-14
Identity = 33/80 (41.25%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISK 274
            M+IE+ +    WL   L  + +ADP  L+KYV+AL+KKDK++  L+ +C+DQL VFL ++T+ F+D +F+ +  K Y+ +
Sbjct:    1 MIIEDFEALKHWLSKTLEPICDADPSALAKYVLALVKKDKTDRELKALCIDQLDVFLQKETQGFVDKLFDAINTKNYLPQ 80

HSP 2 Score: 60.4622 bits (145), Expect = 1.421e-8
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  IP E N+ ++L +HF  FG +  +QV + GD   AL++FAT   A  A  S   +L+NRFI+
Sbjct:  582 LELRRIPPELNNISKLNEHFSKFGTIVNLQVAYGGDPEGALIQFATHGEAKKAISSTEAVLNNRFIK 648
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:407926])

HSP 1 Score: 79.337 bits (194), Expect = 1.953e-14
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTS 295
            +M+IE+ +    WL   L  + +ADP  L+KYV+AL+KKDK++  L+ +C+DQL VFL ++T+ F+D +F+ +  K Y+ + +   T+
Sbjct:   40 EMIIEDFEALKHWLSKTLEPICDADPSALAKYVLALVKKDKTDRELKALCIDQLDVFLQKETQGFVDKLFDAINTKNYLPQPDSTSTA 127

HSP 2 Score: 60.077 bits (144), Expect = 1.710e-8
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  IP E N+ ++L +HF  FG +  +QV + GD   AL++FAT   A  A  S   +L+NRFI+
Sbjct:  547 LELRRIPPELNNISKLNEHFSKFGTIVNLQVAYGGDPEGALIQFATHGEAKKAISSTEAVLNNRFIK 613
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:407926])

HSP 1 Score: 78.9518 bits (193), Expect = 2.012e-14
Identity = 33/80 (41.25%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISK 274
            M+IE+ +    WL   L  + +ADP  L+KYV+AL+KKDK++  L+ +C+DQL VFL ++T+ F+D +F+ +  K Y+ +
Sbjct:    1 MIIEDFEALKHWLSKTLEPICDADPSALAKYVLALVKKDKTDRELKALCIDQLDVFLQKETQGFVDKLFDAINTKNYLPQ 80
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Match: Rbm27 (RNA binding motif protein 27 [Source:MGI Symbol;Acc:MGI:2147194])

HSP 1 Score: 88.9669 bits (219), Expect = 2.081e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEP 88

HSP 2 Score: 62.3882 bits (150), Expect = 2.859e-9
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  607 IPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 669
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Match: Rbm27 (RNA binding motif protein 27 [Source:MGI Symbol;Acc:MGI:2147194])

HSP 1 Score: 88.5817 bits (218), Expect = 2.199e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEP 88

HSP 2 Score: 62.7734 bits (151), Expect = 2.253e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            L +  IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  547 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 614
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Match: Rbm27 (RNA binding motif protein 27 [Source:MGI Symbol;Acc:MGI:2147194])

HSP 1 Score: 87.4261 bits (215), Expect = 5.525e-17
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEP 88
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Match: Rbm26 (RNA binding motif protein 26 [Source:MGI Symbol;Acc:MGI:1921463])

HSP 1 Score: 85.8853 bits (211), Expect = 1.700e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 4.610e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 600
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Match: Rbm26 (RNA binding motif protein 26 [Source:MGI Symbol;Acc:MGI:1921463])

HSP 1 Score: 85.8853 bits (211), Expect = 1.785e-16
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 4.689e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 605
[Close]
BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Match: sp|Q5SFM8|RBM27_MOUSE (RNA-binding protein 27 OS=Mus musculus OX=10090 GN=Rbm27 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.455e-16
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEP 88

HSP 2 Score: 62.3882 bits (150), Expect = 2.000e-8
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  607 IPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 669
[Close]
BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Match: sp|Q9P2N5|RBM27_HUMAN (RNA-binding protein 27 OS=Homo sapiens OX=9606 GN=RBM27 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.192e-16
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSP 298
            MLIE+VD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+  C DQL VFL ++T  F+D +FE L  K Y+  LE  +  P
Sbjct:    1 MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPLLEPVKPEP 88

HSP 2 Score: 62.7734 bits (151), Expect = 1.498e-8
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            L +  IP E N+  +L +HF  FG +  +QV F+GD   AL+++ T+E A  A  S   +L+NRFIR 
Sbjct:  602 LEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRV 669
[Close]
BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Match: sp|Q6NZN0|RBM26_MOUSE (RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.240e-15
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 3.200e-8
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  539 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 605
[Close]
BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Match: sp|Q5T8P6|RBM26_HUMAN (RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.442e-15
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLE 280
            KM+IEN +   SWL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL ++T+ F++ +F+ +  K Y+   E
Sbjct:    4 KMIIENFEALKSWLSKTLEPICDADPSALAKYVLALVKKDKSEKELKALCIDQLDVFLQKETQIFVEKLFDAVNTKSYLPPPE 86

HSP 2 Score: 61.6178 bits (148), Expect = 3.222e-8
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  +P E N+ ++L +HF  FG +  +QV + GD   AL++FAT E A  A  S   +L+NRFI+
Sbjct:  534 LELRKVPPELNNISKLNEHFSRFGTLVNLQVAYNGDPEGALIQFATYEEAKKAISSTEAVLNNRFIK 600
[Close]
BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Match: sp|Q2T9I5|RBM26_XENLA (RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.009e-14
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTS 295
            M+IE+ +    WL   L  + +ADP  L+KYV+AL+KKDKS+  L  +C+DQL VFL ++T+ F+D +F+ +  K Y+ + +   T+
Sbjct:    1 MIIEDFEALKHWLSKTLEPICDADPSALAKYVLALVKKDKSDRELNALCIDQLDVFLQKETQGFVDKLFDAINTKSYLPQPDSTSTA 87

HSP 2 Score: 62.7734 bits (151), Expect = 1.576e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L L  IP E N+ ++L +HF  FG +  +QV ++GD   AL++FAT   A  A  S   +L+NRFIR
Sbjct:  583 LELRRIPPELNNISKLNEHFSKFGTIVNLQVAYKGDPEGALIQFATHGEAKKAISSTEAVLNNRFIR 649
[Close]
BLAST of RNA-binding protein 26 vs. TrEMBL
Match: A0A0V1J2D8 (RNA-binding protein 26 OS=Trichinella pseudospiralis OX=6337 GN=Rbm26 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.274e-18
Identity = 90/287 (31.36%), Postives = 136/287 (47.39%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDE--DKRNNITRSFSKRSRDH-SSYKMHDESRKKKRYNDDIDIKDXXXXXXXXXXXXXXXXY------ERMDYSHK----------NDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSN 838
            M ++  +   +WL+N L+ L +ADP  L+KYV+ALLKKDK+E+ L+  C+DQL VFL ++TKKF+D++F  LK K YI                  T+K ++   +K          +P+ R + P    K S DE    R   + S S+ +R + SS K   +S ++ +   D     +   SS     R K ++      E+   +HK          ND  + I    EK+    K  C D+ EKG C+ G+ C +DHG D V  +   + S   M   T  SN
Sbjct:    1 MFVDQPEQLKNWLINTLSPLCDADPAALAKYVMALLKKDKTEADLKHFCLDQLDVFLQKETKKFVDELFLALKSKVYI-----------------VTDKESQPSSTKE---------VPKKRSLEPSRNEKPSADEHLKSRRVDSHSGSRPARRYASSPKARSKSTERSKGKGDTTSVTQNKASSSTVRDRVKAHWSPSSNKEQRKSTHKDLNEAAGNAENDSVQSIRSEKEKR---KKARCRDYDEKGYCMLGDNCVYDHGPDPVVVEDVALSSMIPMKDGTGRSN 258

HSP 2 Score: 67.781 bits (164), Expect = 1.245e-7
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 2 
Query: 1283 RCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            R L +  IP   N  A+L +HF  FG +T ++V ++GD   AL+ + T   A AA++S  PIL+NRFIR
Sbjct:  399 RTLEVRRIPQPLNTIAKLNEHFSQFGHITNIEVCYEGDPQAALITYMTRPQALAAYKSTDPILNNRFIR 467
[Close]
BLAST of RNA-binding protein 26 vs. TrEMBL
Match: A0A0V1J2B6 (RNA-binding protein 26 OS=Trichinella pseudospiralis OX=6337 GN=Rbm26 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.350e-18
Identity = 90/287 (31.36%), Postives = 136/287 (47.39%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDED--KRNNITRSFSKRSRDH-SSYKMHDESRKKKRYNDDIDIKDXXXXXXXXXXXXXXXXY------ERMDYSHK----------NDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSN 838
            M ++  +   +WL+N L+ L +ADP  L+KYV+ALLKKDK+E+ L+  C+DQL VFL ++TKKF+D++F  LK K YI                  T+K ++   +K          +P+ R + P    K S DE    R   + S S+ +R + SS K   +S ++ +   D     +   SS     R K ++      E+   +HK          ND  + I    EK+    K  C D+ EKG C+ G+ C +DHG D V  +   + S   M   T  SN
Sbjct:    1 MFVDQPEQLKNWLINTLSPLCDADPAALAKYVMALLKKDKTEADLKHFCLDQLDVFLQKETKKFVDELFLALKSKVYI-----------------VTDKESQPSSTKE---------VPKKRSLEPSRNEKPSADEHLKSRRVDSHSGSRPARRYASSPKARSKSTERSKGKGDTTSVTQNKASSSTVRDRVKAHWSPSSNKEQRKSTHKDLNEAAGNAENDSVQSIRSEKEKR---KKARCRDYDEKGYCMLGDNCVYDHGPDPVVVEDVALSSMIPMKDGTGRSN 258

HSP 2 Score: 67.781 bits (164), Expect = 1.249e-7
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 2 
Query: 1283 RCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            R L +  IP   N  A+L +HF  FG +T ++V ++GD   AL+ + T   A AA++S  PIL+NRFIR
Sbjct:  399 RTLEVRRIPQPLNTIAKLNEHFSQFGHITNIEVCYEGDPQAALITYMTRPQALAAYKSTDPILNNRFIR 467
[Close]
BLAST of RNA-binding protein 26 vs. TrEMBL
Match: A0A0V1N000 (RNA-binding protein 26 OS=Trichinella papuae OX=268474 GN=swp-1 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.383e-18
Identity = 90/289 (31.14%), Postives = 132/289 (45.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKK-----KRYNDDIDIKDXXXXXXXXXXXXXX-----XXYERMDYSHK----------NDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSN 838
            KM ++  +   +WL+N L+ L +ADP  L+KYV+ALLKKDK+E+ L+  C+DQL VFL ++TKKF+D++F  LK K YI                  T+K ++   +K          +P+ R + P    K S DE  ++    S S  SR    Y    ++R K     K  ND   +   +  SS  +             E+   +HK          ND  + I    EK+    K  C D+ EKG C+ G+ C +DHG D V  +   + S   M   T  SN
Sbjct:  676 KMFVDQPEQLKNWLINTLSPLCDADPAALAKYVMALLKKDKTEADLKHFCLDQLDVFLQKETKKFVDELFLALKSKVYI-----------------VTDKESQPSSTKE---------VPKKRSLEPSRNEKPSADEHLKSRRVDSHSA-SRPVRRYASSPKARSKSSERSKGKNDTTSVTQNKASSSTVRDRVKAHWSPSNNKEQRKSTHKDSNEAAGNAENDSVQSIRSEKEKRK---KARCRDYDEKGYCMLGDNCVYDHGPDPVVVEDVALSSMIPMKDGTGRSN 934

HSP 2 Score: 65.855 bits (159), Expect = 4.763e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 2 
Query: 1283 RCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            R L +  IP   N   +L +HF  FG +T ++V ++GD   AL+ + T   A AA++S  PIL+NRFIR 
Sbjct: 1075 RTLEVRRIPQPLNTITKLNEHFSQFGHITNIEVCYEGDPQAALITYMTRPQALAAYKSTDPILNNRFIRV 1144
[Close]
BLAST of RNA-binding protein 26 vs. TrEMBL
Match: A0A0V1N022 (RNA-binding protein 26 OS=Trichinella papuae OX=268474 GN=swp-1 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.566e-18
Identity = 90/289 (31.14%), Postives = 132/289 (45.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKK-----KRYNDDIDIKDXXXXXXXXXXXXXX-----XXYERMDYSHK----------NDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSN 838
            KM ++  +   +WL+N L+ L +ADP  L+KYV+ALLKKDK+E+ L+  C+DQL VFL ++TKKF+D++F  LK K YI                  T+K ++   +K          +P+ R + P    K S DE  ++    S S  SR    Y    ++R K     K  ND   +   +  SS  +             E+   +HK          ND  + I    EK+    K  C D+ EKG C+ G+ C +DHG D V  +   + S   M   T  SN
Sbjct:  690 KMFVDQPEQLKNWLINTLSPLCDADPAALAKYVMALLKKDKTEADLKHFCLDQLDVFLQKETKKFVDELFLALKSKVYI-----------------VTDKESQPSSTK---------EVPKKRSLEPSRNEKPSADEHLKSRRVDSHSA-SRPVRRYASSPKARSKSSERSKGKNDTTSVTQNKASSSTVRDRVKAHWSPSNNKEQRKSTHKDSNEAAGNAENDSVQSIRSEKEKRK---KARCRDYDEKGYCMLGDNCVYDHGPDPVVVEDVALSSMIPMKDGTGRSN 948

HSP 2 Score: 65.4698 bits (158), Expect = 6.455e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 2 
Query: 1283 RCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            R L +  IP   N   +L +HF  FG +T ++V ++GD   AL+ + T   A AA++S  PIL+NRFIR 
Sbjct: 1089 RTLEVRRIPQPLNTITKLNEHFSQFGHITNIEVCYEGDPQAALITYMTRPQALAAYKSTDPILNNRFIRV 1158
[Close]
BLAST of RNA-binding protein 26 vs. TrEMBL
Match: A0A0V1N073 (RNA-binding protein 26 OS=Trichinella papuae OX=268474 GN=swp-1 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.959e-18
Identity = 90/289 (31.14%), Postives = 132/289 (45.67%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKK-----KRYNDDIDIKDXXXXXXXXXXXXXX-----XXYERMDYSHK----------NDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSN 838
            KM ++  +   +WL+N L+ L +ADP  L+KYV+ALLKKDK+E+ L+  C+DQL VFL ++TKKF+D++F  LK K YI                  T+K ++   +K          +P+ R + P    K S DE  ++    S S  SR    Y    ++R K     K  ND   +   +  SS  +             E+   +HK          ND  + I    EK+    K  C D+ EKG C+ G+ C +DHG D V  +   + S   M   T  SN
Sbjct:  690 KMFVDQPEQLKNWLINTLSPLCDADPAALAKYVMALLKKDKTEADLKHFCLDQLDVFLQKETKKFVDELFLALKSKVYI-----------------VTDKESQPSSTK---------EVPKKRSLEPSRNEKPSADEHLKSRRVDSHSA-SRPVRRYASSPKARSKSSERSKGKNDTTSVTQNKASSSTVRDRVKAHWSPSNNKEQRKSTHKDSNEAAGNAENDSVQSIRSEKEKRK---KARCRDYDEKGYCMLGDNCVYDHGPDPVVVEDVALSSMIPMKDGTGRSN 948

HSP 2 Score: 65.855 bits (159), Expect = 4.937e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 2 
Query: 1283 RCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            R L +  IP   N   +L +HF  FG +T ++V ++GD   AL+ + T   A AA++S  PIL+NRFIR 
Sbjct: 1089 RTLEVRRIPQPLNTITKLNEHFSQFGHITNIEVCYEGDPQAALITYMTRPQALAAYKSTDPILNNRFIRV 1158
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Cavefish
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:103044505])

HSP 1 Score: 95.1301 bits (235), Expect = 1.740e-19
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 2 
Query:   32 KMLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVD 307
            KM+IEN+D   +WL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL + T+ F+D +FE +  K Y+ + E   ++P  D
Sbjct:    4 KMIIENLDALKTWLSKTLEPICDADPSALAKYVVALVKKDKSEKELKALCIDQLDVFLQKDTQTFVDKLFEAVNAKSYLPQPEQPSSAPRTD 95

HSP 2 Score: 58.151 bits (139), Expect = 3.924e-8
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  IP E N+ ++L +HF  FG +  +QV +  D   AL++FA+ E A  A +S   +L+NRFI+
Sbjct:  538 LAIRQIPPELNNISKLNEHFCKFGTIVNLQVAYNNDPEGALIQFASPEEAKRAIQSTEAVLNNRFIK 604
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Cavefish
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:103044505])

HSP 1 Score: 93.9745 bits (232), Expect = 4.244e-19
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVD 307
            M+IEN+D   +WL   L  + +ADP  L+KYV+AL+KKDKSE  L+ +C+DQL VFL + T+ F+D +FE +  K Y+ + E   ++P  D
Sbjct:    1 MIIENLDALKTWLSKTLEPICDADPSALAKYVVALVKKDKSEKELKALCIDQLDVFLQKDTQTFVDKLFEAVNAKSYLPQPEQPSSAPRTD 91

HSP 2 Score: 57.7658 bits (138), Expect = 5.051e-8
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  IP E N+ ++L +HF  FG +  +QV +  D   AL++FA+ E A  A +S   +L+NRFI+
Sbjct:  563 LAIRQIPPELNNISKLNEHFCKFGTIVNLQVAYNNDPEGALIQFASPEEAKRAIQSTEAVLNNRFIK 629
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Cavefish
Match: rbm27 (RNA binding motif protein 27 [Source:NCBI gene;Acc:103036865])

HSP 1 Score: 90.8929 bits (224), Expect = 3.467e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYIS 271
            M+I+NVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  LR +C DQL VFL ++T  F+D +FECL  K Y+ 
Sbjct:    1 MIIDNVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKDLRALCADQLDVFLQKETTGFVDKLFECLTTKNYLG 79

HSP 2 Score: 55.8398 bits (133), Expect = 2.304e-7
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            IP + N+  +L +HF  FG +  +QV F GD   AL+++  +E A  A  S   +L+NRFIR
Sbjct:  551 IPRDLNNITKLNEHFSKFGTIVNIQVVFGGDPEAALIQYTANEEARRAISSTEAVLNNRFIR 612
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Cavefish
Match: rbm27 (RNA binding motif protein 27 [Source:NCBI gene;Acc:103036865])

HSP 1 Score: 90.8929 bits (224), Expect = 3.602e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYIS 271
            M+I+NVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  LR +C DQL VFL ++T  F+D +FECL  K Y+ 
Sbjct:    1 MIIDNVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKDLRALCADQLDVFLQKETTGFVDKLFECLTTKNYLG 79

HSP 2 Score: 55.4546 bits (132), Expect = 2.473e-7
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 2 
Query: 1304 IPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
            IP + N+  +L +HF  FG +  +QV F GD   AL+++  +E A  A  S   +L+NRFIR 
Sbjct:  551 IPRDLNNITKLNEHFSKFGTIVNIQVVFGGDPEAALIQYTANEEARRAISSTEAVLNNRFIRV 613
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Sea Lamprey
Match: RBM27 (RNA binding motif protein 27 [Source:HGNC Symbol;Acc:HGNC:29243])

HSP 1 Score: 54.6842 bits (130), Expect = 8.764e-8
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIR 1489
            L +  +P E N+  +L  HF  FG +  +QV F GD   ALV+F+  + A  A  S   +L+NRFIR
Sbjct:  481 LEIRKVPKELNNITKLNDHFCKFGTIVNIQVAFGGDPEGALVQFSNHDQARRAISSTEAVLNNRFIR 547
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Nematostella
Match: EDO41777 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S3I5])

HSP 1 Score: 87.8113 bits (216), Expect = 1.103e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M I+NV+   +WL + L  + EADP  L+KYV+AL+KKDK+   L ++C DQL VFLS++T KF++ +FE LK   YI
Sbjct:    1 MQIQNVEALKTWLTSRLEPICEADPAALAKYVVALVKKDKTSEELMEVCKDQLEVFLSDETNKFVEVLFEALKDDSYI 78

HSP 2 Score: 54.299 bits (129), Expect = 2.566e-7
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRT 1492
             L +  IP + N+  +L ++F+ FG +  +QV    D   ALV+F+ S  A  A+R P  +L NRFIR 
Sbjct:  499 TLEIKKIPRDQNNITKLNEYFKRFGNIVNIQVNAFNDPEAALVQFSNSLEARNAYRCPDAVLGNRFIRV 567
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Match: rbm27 (RNA binding motif protein 27 [Source:NCBI gene;Acc:101155133])

HSP 1 Score: 91.2781 bits (225), Expect = 3.050e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYIS 271
            M+IENVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+ +C DQL VFL ++T  F+D +FECL  K Y+ 
Sbjct:    1 MIIENVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKALCADQLDVFLQKETVGFVDKLFECLTTKIYLG 79

HSP 2 Score: 55.0694 bits (131), Expect = 3.377e-7
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFI 1486
            L +  IP E N+  +L +HF  FG +  +QV + GD   AL+++  +E A  A  S   +LDNRFI
Sbjct:  558 LEVRRIPPELNNITKLNEHFSKFGTIVNIQVVYGGDPRAALIQYTKNEEARRAISSIEAVLDNRFI 623
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Match: rbm27 (RNA binding motif protein 27 [Source:NCBI gene;Acc:101155133])

HSP 1 Score: 91.2781 bits (225), Expect = 3.097e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYIS 271
            M+IENVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+ +C DQL VFL ++T  F+D +FECL  K Y+ 
Sbjct:    1 MIIENVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKALCADQLDVFLQKETVGFVDKLFECLTTKIYLG 79

HSP 2 Score: 55.0694 bits (131), Expect = 3.645e-7
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFI 1486
            L +  IP E N+  +L +HF  FG +  +QV + GD   AL+++  +E A  A  S   +LDNRFI
Sbjct:  558 LEVRRIPPELNNITKLNEHFSKFGTIVNIQVVYGGDPRAALIQYTKNEEARRAISSIEAVLDNRFI 623
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Match: rbm27 (RNA binding motif protein 27 [Source:NCBI gene;Acc:101155133])

HSP 1 Score: 90.8929 bits (224), Expect = 3.401e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYIS 271
            M+IENVD   SWL   L  + +ADP  L+ YV+AL+KKDK E  L+ +C DQL VFL ++T  F+D +FECL  K Y+ 
Sbjct:    1 MIIENVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKALCADQLDVFLQKETVGFVDKLFECLTTKIYLG 79

HSP 2 Score: 55.4546 bits (132), Expect = 2.653e-7
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFI 1486
            L +  IP E N+  +L +HF  FG +  +QV + GD   AL+++  +E A  A  S   +LDNRFI
Sbjct:  558 LEVRRIPPELNNITKLNEHFSKFGTIVNIQVVYGGDPRAALIQYTKNEEARRAISSIEAVLDNRFI 623
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:101156877])

HSP 1 Score: 90.5077 bits (223), Expect = 5.228e-18
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            M+IEN+D F +WL   L  + +ADP  L+KYV AL+KKDKSE  L+ +C+DQL VFL ++T+ F+D +FE + ++ Y+
Sbjct:    1 MIIENLDAFKTWLSETLEPICDADPSALAKYVAALVKKDKSEKELKALCIDQLDVFLQKETQPFVDKLFEAVNNRSYL 78

HSP 2 Score: 64.3142 bits (155), Expect = 5.667e-10
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLF 1501
            LL+  IP E N+ ++L +HF  FG +  +QV +Q D   AL++FA  E A  A +S   +L+NRFI+   F
Sbjct:  543 LLVRQIPPELNNISKLNEHFSKFGTIVNLQVAYQNDPEGALIQFAFPEEAERAMQSTEAVLNNRFIKVHWF 613
[Close]
BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Match: rbm26 (RNA binding motif protein 26 [Source:NCBI gene;Acc:101156877])

HSP 1 Score: 69.707 bits (169), Expect = 1.070e-11
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:   98 EADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYI 268
            +ADP  L+KYV AL+KKDKSE  L+ +C+DQL VFL ++T+ F+D +FE + ++ Y+
Sbjct:   38 DADPSALAKYVAALVKKDKSEKELKALCIDQLDVFLQKETQPFVDKLFEAVNNRSYL 94

HSP 2 Score: 63.929 bits (154), Expect = 7.169e-10
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 2 
Query: 1289 LLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLF 1501
            LL+  IP E N+ ++L +HF  FG +  +QV +Q D   AL++FA  E A  A +S   +L+NRFI+   F
Sbjct:  559 LLVRQIPPELNNISKLNEHFSKFGTIVNLQVAYQNDPEGALIQFAFPEEAERAMQSTEAVLNNRFIKVHWF 629
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BLAST of RNA-binding protein 26 vs. Planmine SMEST
Match: SMESG000027877.1 (SMESG000027877.1)

HSP 1 Score: 1636.31 bits (4236), Expect = 0.000e+0
Identity = 871/872 (99.89%), Postives = 871/872 (99.89%), Query Frame = 2 
Query:   35 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVXXXXXXIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKKKRYNDDIDIKDXXXXXXXXXXXXXXXXYERMDYSHKNDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVENSQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSAIXXXXXXXXXXXXXXXXXXQGSARCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLFVRPLDSNNLTLCKDATSDDESRKKRTVVVPCNGGDNDADCVYPSDDSSCGPWGRQRQVSDSDKKGTVVVEESKKIDSRENKWPIASDLKLDRRPNEIEIKVISKQSDEMKHKTTADSNRDHRDKKLQILNPREEMKNGIDKLEESLQSCKNRLRNLLDEQKKPDCDQELIKRQLLESYNYFKHLREMLESIKKKNAFYPDXXXXXXXXXXIKNAQNDLVDMNKEDESYKKQLKTITDLKRELVKLQTISKQVTKRPNKLPSIVETKLDNRPKXXXXXXXXXXXXXDDIRNIFKIYQIEKIEFSDNDVLFFSVKFKTRKEADKVFKDMFKILKEKSISLSFDKPIPICDPLDFQTRSVIAETHRGTPSRRDECASSDEDEAKMN 2650
            MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVSSSEEEIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKKKRYNDDIDIKDRRYHSSRHKSHRTKKYYERMDYSHKNDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVENSQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQS IRRGVGRYNNNNDNRYNRRQGSARCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLFVRPLDSNNLTLCKDATSDDESRKKRTVVVPCNGGDNDADCVYPSDDSSCGPWGRQRQVSDSDKKGTVVVEESKKIDSRENKWPIASDLKLDRRPNEIEIKVISKQSDEMKHKTTADSNRDHRDKKLQILNPREEMKNGIDKLEESLQSCKNRLRNLLDEQKKPDCDQELIKRQLLESYNYFKHLREMLESIKKKNAFYPDLSEEEKLKLKIKNAQNDLVDMNKEDESYKKQLKTITDLKRELVKLQTISKQVTKRPNKLPSIVETKLDNRPKTLYVTGLTTNTTVDDIRNIFKIYQIEKIEFSDNDVLFFSVKFKTRKEADKVFKDMFKILKEKSISLSFDKPIPICDPLDFQTRSVIAETHRGTPSRRDECASSDEDEAKMN
Sbjct:    1 MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICVDQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKNTKLDKSKFKVSSSEEEIIPELRKISPINKIKSSDDEDKRNNITRSFSKRSRDHSSYKMHDESRKKKRYNDDIDIKDRRYHSSRHKSHRTKKYYERMDYSHKNDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSDINCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENNRYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVENSQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSGIRRGVGRYNNNNDNRYNRRQGSARCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLFVRPLDSNNLTLCKDATSDDESRKKRTVVVPCNGGDNDADCVYPSDDSSCGPWGRQRQVSDSDKKGTVVVEESKKIDSRENKWPIASDLKLDRRPNEIEIKVISKQSDEMKHKTTADSNRDHRDKKLQILNPREEMKNGIDKLEESLQSCKNRLRNLLDEQKKPDCDQELIKRQLLESYNYFKHLREMLESIKKKNAFYPDLSEEEKLKLKIKNAQNDLVDMNKEDESYKKQLKTITDLKRELVKLQTISKQVTKRPNKLPSIVETKLDNRPKTLYVTGLTTNTTVDDIRNIFKIYQIEKIEFSDNDVLFFSVKFKTRKEADKVFKDMFKILKEKSISLSFDKPIPICDPLDFQTRSVIAETHRGTPSRRDECASSDEDEAKMN 872
[Close]
BLAST of RNA-binding protein 26 vs. Planmine SMEST
Match: SMESG000014357.1 (SMESG000014357.1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.947e-9
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 2 
Query: 1286 CLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVGFQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLF 1501
            CL++++IP   N    + +HFR FG +  ++V + GD   ALVEF   +   AA RS   ++ NRFI+T  +
Sbjct:  293 CLIVSNIPPSMNRIGIVNKHFRKFGLLRNIEVKYGGDPKRALVEFRLLKDMLAANRSVEAVMGNRFIKTRAY 364
The following BLAST results are available for this feature:
BLAST of RNA-binding protein 26 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM274.565e-1747.73RNA binding motif protein 27 [Source:HGNC Symbol;A... [more]
AC091959.35.099e-1747.73novel readthrough transcript[more]
RBM262.815e-1645.78RNA binding motif protein 26 [Source:HGNC Symbol;A... [more]
RBM262.834e-1645.78RNA binding motif protein 26 [Source:HGNC Symbol;A... [more]
RBM263.003e-1645.78RNA binding motif protein 26 [Source:HGNC Symbol;A... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rbm-261.136e-1526.69RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-261.136e-1526.69RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-264.742e-1527.07RNA Binding Motif protein homolog [Source:UniProt... [more]
rbm-263.128e-1345.57RNA Binding Motif protein homolog [Source:UniProt... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
swm2.137e-938.83gene:FBgn0002044 transcript:FBtr0331326[more]
swm2.137e-938.83gene:FBgn0002044 transcript:FBtr0331325[more]
swm2.211e-938.83gene:FBgn0002044 transcript:FBtr0081244[more]
swm2.211e-938.83gene:FBgn0002044 transcript:FBtr0081245[more]
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BLAST of RNA-binding protein 26 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
rbm273.079e-1848.81RNA binding motif protein 27 [Source:ZFIN;Acc:ZDB-... [more]
rbm261.048e-1746.34RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-... [more]
rbm261.048e-1746.34RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
c1qtnf129.908e-1853.85C1q and TNF related 12 [Source:Xenbase;Acc:XB-GENE... [more]
c1qtnf121.052e-1753.85C1q and TNF related 12 [Source:Xenbase;Acc:XB-GENE... [more]
rbm261.523e-1441.25RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
rbm261.953e-1438.64RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
rbm262.012e-1441.25RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbm272.081e-1747.73RNA binding motif protein 27 [Source:MGI Symbol;Ac... [more]
Rbm272.199e-1747.73RNA binding motif protein 27 [Source:MGI Symbol;Ac... [more]
Rbm275.525e-1747.73RNA binding motif protein 27 [Source:MGI Symbol;Ac... [more]
Rbm261.700e-1645.78RNA binding motif protein 26 [Source:MGI Symbol;Ac... [more]
Rbm261.785e-1645.78RNA binding motif protein 26 [Source:MGI Symbol;Ac... [more]
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BLAST of RNA-binding protein 26 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5SFM8|RBM27_MOUSE1.455e-1647.73RNA-binding protein 27 OS=Mus musculus OX=10090 GN... [more]
sp|Q9P2N5|RBM27_HUMAN2.192e-1647.73RNA-binding protein 27 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q6NZN0|RBM26_MOUSE1.240e-1545.78RNA-binding protein 26 OS=Mus musculus OX=10090 GN... [more]
sp|Q5T8P6|RBM26_HUMAN1.442e-1545.78RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q2T9I5|RBM26_XENLA8.009e-1440.23RNA-binding protein 26 OS=Xenopus laevis OX=8355 G... [more]
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BLAST of RNA-binding protein 26 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0V1J2D81.274e-1831.36RNA-binding protein 26 OS=Trichinella pseudospiral... [more]
A0A0V1J2B61.350e-1831.36RNA-binding protein 26 OS=Trichinella pseudospiral... [more]
A0A0V1N0002.383e-1831.14RNA-binding protein 26 OS=Trichinella papuae OX=26... [more]
A0A0V1N0222.566e-1831.14RNA-binding protein 26 OS=Trichinella papuae OX=26... [more]
A0A0V1N0732.959e-1831.14RNA-binding protein 26 OS=Trichinella papuae OX=26... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
rbm261.740e-1945.65RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
rbm264.244e-1945.05RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
rbm273.467e-1850.63RNA binding motif protein 27 [Source:NCBI gene;Acc... [more]
rbm273.602e-1850.63RNA binding motif protein 27 [Source:NCBI gene;Acc... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RBM278.764e-840.30RNA binding motif protein 27 [Source:HGNC Symbol;A... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA-binding protein 26 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO417771.103e-1750.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding protein 26 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm273.050e-1850.63RNA binding motif protein 27 [Source:NCBI gene;Acc... [more]
rbm273.097e-1850.63RNA binding motif protein 27 [Source:NCBI gene;Acc... [more]
rbm273.401e-1850.63RNA binding motif protein 27 [Source:NCBI gene;Acc... [more]
rbm265.228e-1848.72RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
rbm261.070e-1150.88RNA binding motif protein 26 [Source:NCBI gene;Acc... [more]
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BLAST of RNA-binding protein 26 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000027877.10.000e+099.89SMESG000027877.1[more]
SMESG000014357.18.947e-937.50SMESG000014357.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022791 ID=SMED30022791|Name=RNA-binding protein 26|organism=Schmidtea mediterranea sexual|type=transcript|length=2779bp
GTGAATCTTTTAAGTTCGTAATTAAAAATATAAAATGTTGATAGAAAATG
TAGATGATTTTGCGTCATGGCTTGTTAATGAGCTTACTGGGCTATCCGAA
GCCGATCCTGAACCACTATCAAAGTATGTCATTGCCTTACTTAAAAAAGA
TAAATCAGAAAGTAGTCTTCGTAAAATATGTGTTGATCAGCTACACGTTT
TTTTAAGCGAAAAAACTAAAAAGTTCATTGACGATGTATTTGAGTGTTTA
AAACATAAAAAATATATCAGTAAATTAGAATTTAAACGAACTTCGCCCGA
AGTTGATTTAATAATGAAATATACAGAAAAAAATACAAAATTAGATAAAA
GTAAATTTAAAGTTAGTTCCAGTGAAGAGGAAATAATTCCAGAATTACGT
AAAATTTCTCCAATAAATAAAATTAAAAGCTCAGATGATGAAGATAAACG
AAACAATATTACTCGCTCTTTTTCGAAACGTAGTCGAGATCATTCAAGTT
ATAAAATGCACGATGAAAGTAGAAAGAAAAAACGCTATAATGATGACATT
GATATAAAAGATCGTCGATATCATTCTAGTCGCCACAAAAGTCATAGGAC
AAAGAAATACTACGAAAGAATGGATTATTCGCATAAAAACGATGATTCAA
AATTAATTGATTATTCGAATGAAAAAAAGTTATGGGGTATTAAAACTTCT
TGTCCAGATTTCGTTGAAAAAGGAGTGTGTTTGAAAGGTGAATTATGTGA
ATTTGACCACGGAAAAGATATTGTGAGATCTGACATTAATTGTATTTATT
CTGGGGCTTCTATGCCGCCAAATACGATAAATTCCAATTGGCAAGGTATT
CCTTTTAACCAAGGTTGGGTTGATAAATTCAATATTTCCAAACCTTCTCA
TAACATTTTACCATTGAAAAATGTTGAAAACAATCGATATTCGGCAAATA
TTCAAGACAAAAACTCTAATAAAAGCATAAGTGATATATATGATCCAAGT
CACCCTGAAATCGATGGGGGTATTGAGATTGATAAAATCAAAGTTCATGA
TTCTGCACCGGTCTATGTGCCATCACAGGTTGAGAATAGTCAAAAAGAAA
GCAGTTGTTGGAAAGATAGCGATGATAATCGAGAGACCAATAACGGAGGC
TCTAAACTAACAACTGTGATAGGTAGCGGACAAGGAAGGCAAAGATTCCA
TCGCCAATCGGCAATTCGACGCGGTGTTGGTCGTTACAACAATAACAATG
ACAATCGCTATAATCGGCGCCAGGGTTCGGCTCGATGCTTGCTACTGACT
CACATCCCGACTGAATGCAATGATGAAGCACAATTGCGTCAACATTTCCG
AACGTTCGGAAAAGTAACTGGCGTTCAAGTCGGATTTCAAGGCGATCAAC
ACCACGCACTTGTAGAATTCGCTACCAGTGAGCATGCTTATGCCGCATTC
CGATCACCGTTGCCAATATTAGATAACAGATTTATTCGAACCAGTTTATT
TGTTCGTCCATTAGATTCAAACAATCTTACGTTGTGCAAAGACGCCACAA
GTGATGATGAAAGTCGAAAGAAGCGCACAGTTGTTGTCCCATGCAATGGG
GGAGATAATGATGCGGATTGTGTGTATCCAAGTGACGATTCCTCTTGTGG
GCCGTGGGGTCGACAAAGACAAGTAAGTGATAGTGATAAAAAAGGTACAG
TAGTGGTGGAAGAGAGTAAAAAAATCGATTCAAGAGAAAATAAATGGCCA
ATTGCTAGTGATTTAAAATTGGATAGAAGACCAAATGAAATAGAAATAAA
AGTGATTAGCAAACAGAGTGATGAAATGAAACACAAGACAACTGCTGATA
GTAACAGAGATCATCGGGATAAAAAATTGCAAATACTCAATCCACGGGAA
GAAATGAAGAATGGCATTGACAAATTAGAGGAATCGCTGCAATCTTGTAA
AAATCGGCTGAGAAATCTGTTGGACGAACAGAAGAAACCCGATTGTGATC
AAGAACTTATCAAGAGACAATTGCTTGAATCATACAATTACTTTAAACAT
TTGAGGGAGATGTTGGAGTCTATTAAGAAGAAAAATGCATTTTATCCGGA
TTTAAGTGAAGAAGAAAAACTCAAACTTAAAATAAAAAACGCTCAGAACG
ACTTAGTTGACATGAATAAAGAGGACGAATCGTATAAAAAGCAATTGAAA
ACTATAACTGACCTGAAAAGAGAACTAGTAAAACTGCAAACCATATCTAA
ACAAGTTACTAAGCGTCCTAACAAGTTACCGTCTATCGTCGAAACGAAAT
TAGACAATCGTCCAAAGACACTTTATGTTACTGGCTTAACTACCAATACT
ACAGTGGATGATATTCGCAATATTTTCAAAATTTATCAAATAGAAAAAAT
TGAATTCTCAGATAATGATGTTTTGTTTTTCTCTGTAAAATTTAAAACTC
GCAAAGAAGCCGATAAAGTTTTTAAAGATATGTTTAAAATATTGAAAGAG
AAATCAATTTCACTAAGTTTCGACAAACCAATTCCAATATGTGATCCTTT
GGACTTTCAGACTCGATCAGTTATAGCGGAAACACATCGAGGTACACCTA
GCAGAAGGGATGAGTGCGCAAGCTCAGATGAAGATGAAGCAAAAATGAAT
TAATATTTCTTATATATAAATATTTCGAGTTTTACCGCATATTTCACTTA
GTTTGAATTATTTTCAATCTGTTAATAATTGAAGTTGAAGATTTGTATAT
ATATTTAACTGATGATTAAATGTAGGATG
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protein sequence of SMED30022791-orf-1

>SMED30022791-orf-1 ID=SMED30022791-orf-1|Name=SMED30022791-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=873bp
MLIENVDDFASWLVNELTGLSEADPEPLSKYVIALLKKDKSESSLRKICV
DQLHVFLSEKTKKFIDDVFECLKHKKYISKLEFKRTSPEVDLIMKYTEKN
TKLDKSKFKVSSSEEEIIPELRKISPINKIKSSDDEDKRNNITRSFSKRS
RDHSSYKMHDESRKKKRYNDDIDIKDRRYHSSRHKSHRTKKYYERMDYSH
KNDDSKLIDYSNEKKLWGIKTSCPDFVEKGVCLKGELCEFDHGKDIVRSD
INCIYSGASMPPNTINSNWQGIPFNQGWVDKFNISKPSHNILPLKNVENN
RYSANIQDKNSNKSISDIYDPSHPEIDGGIEIDKIKVHDSAPVYVPSQVE
NSQKESSCWKDSDDNRETNNGGSKLTTVIGSGQGRQRFHRQSAIRRGVGR
YNNNNDNRYNRRQGSARCLLLTHIPTECNDEAQLRQHFRTFGKVTGVQVG
FQGDQHHALVEFATSEHAYAAFRSPLPILDNRFIRTSLFVRPLDSNNLTL
CKDATSDDESRKKRTVVVPCNGGDNDADCVYPSDDSSCGPWGRQRQVSDS
DKKGTVVVEESKKIDSRENKWPIASDLKLDRRPNEIEIKVISKQSDEMKH
KTTADSNRDHRDKKLQILNPREEMKNGIDKLEESLQSCKNRLRNLLDEQK
KPDCDQELIKRQLLESYNYFKHLREMLESIKKKNAFYPDLSEEEKLKLKI
KNAQNDLVDMNKEDESYKKQLKTITDLKRELVKLQTISKQVTKRPNKLPS
IVETKLDNRPKTLYVTGLTTNTTVDDIRNIFKIYQIEKIEFSDNDVLFFS
VKFKTRKEADKVFKDMFKILKEKSISLSFDKPIPICDPLDFQTRSVIAET
HRGTPSRRDECASSDEDEAKMN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR002483PWI_dom
IPR000571Znf_CCCH
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: biological process
TermDefinition
GO:0006397mRNA processing
GO:0006396RNA processing
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 621..648
NoneNo IPR availableCOILSCoilCoilcoord: 693..720
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 848..872
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 851..872
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..179
NoneNo IPR availablePANTHERPTHR14398RNA RECOGNITION RRM/RNP DOMAINcoord: 1..858
NoneNo IPR availableCDDcd12257RRM1_RBM26_likecoord: 417..485
e-value: 7.7612E-23
score: 90.6837
NoneNo IPR availableCDDcd00590RRM_SFcoord: 763..828
e-value: 2.09042E-5
score: 41.1365
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 418..487
e-value: 0.0033
score: 26.6
coord: 762..828
e-value: 0.0053
score: 26.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 424..473
e-value: 1.1E-4
score: 21.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 761..832
score: 9.149
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 417..495
score: 9.03
IPR002483PWI domainPFAMPF01480PWIcoord: 8..72
e-value: 3.9E-5
score: 23.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 757..831
e-value: 9.4E-6
score: 27.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 399..492
e-value: 1.2E-7
score: 33.3
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 217..245
score: 10.305
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 417..815