Expressed conserved protein

Overview
NameExpressed conserved protein
Smed IDSMED30022691
Length (bp)1129
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Expressed conserved protein (SMED30022691) t-SNE clustered cells

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30022691) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Expressed conserved protein (SMED30022691) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Expressed conserved protein (SMED30022691) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30022691

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30022691h1SMcG0008056 Contig51794uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30022691h1SMcG0008056 Contig51794newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30022691h1SMcG0008056 dd_Smed_v4_9325_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30022691h1SMcG0008056 dd_Smed_v4_9325_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30022691h1SMcG0008056 dd_Smed_v6_9325_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30022691h1SMcG0008056 Contig51794uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30022691h1SMcG0008056 Contig51794newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A4E0S481 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_000294 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.817e-39
Identity = 91/278 (32.73%), Postives = 151/278 (54.32%), Query Frame = 3
Query:  189 VKTEKKQAHILKQSIHIA---YHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHLLTSCYLKKWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGI-FSRKEI-----------------DVNAQEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQ 959
            V++++  A   K+    A   YH G    F+G+V  ++GV  +++F + ++D R+   F  V + VGLF   A +         L   LEL DS+W  A+ ++++GIL  I +  IH++ SC L+  RKW  +L+E+  L +AVI ILI LSLAESEIE+IHD  D  L  +L  N L+ +  + +A     + +G+   + EI                  ++  ++ L LSPPQ+S+ L IA+EF  L +FL  L++F+R+ +  E+ +  + + +
Sbjct:    2 VRSDRYAAKTKKRPRRCALATYHTGSVILFIGIVVSIVGVCTNRLFHVYVYDHRKPARFLHVHIPVGLFSQAAEVTWLSLAQEKLTHNLELDDSQWIGARALAVVGILAAICAFVIHIVISC-LQLHRKWSTVLMEVCSLLLAVIAILISLSLAESEIEVIHDQGDNALTRLLVSNRLL-LDNDMKALQAMGQDSGVDLPQTEIALSEEATAVDTSSSAPSTISGGDFALFLSPPQTSFALLIAAEFLILLAFLAVLIYFVRVCEKAEEARKQMRRAE 277          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A068WNW8 (Expressed conserved protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000190500 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.019e-35
Identity = 92/263 (34.98%), Postives = 139/263 (52.85%), Query Frame = 3
Query:  198 EKKQAHILKQSIHIA---YHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNN--VNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHL-LTSCYLKKWRK-WWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIF-SRKEIDVNA-QEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQ 959
            E +  H  K+    A   YH       +G+V  L GVS  ++F+I I+D R  P FH + + VGLF     +     N  V +L  P  L +  W  AK  S+IGI+  + ++ IH+ L  CY  +  K W  + +E+    I VI +L+ LSLAESEIE +H+  D  L  ML  N L+ I  E   S   +    +  +   +  N+  E+NLVLS P+ S+Y  IA++F +L +FL TLV+F+R+S+  E+ +  L K +
Sbjct:   55 EPRLRHQRKRPRRCAIGCYHASAVILLIGVVVALAGVSSSRLFDIFIYDNRHPPLFHHISIHVGLFDVRGEITGNEANPVVEALAYPPVLDEPSWLTAKAASVIGIIFGLLALIIHVALLCCYRGREDKPWGTVAVEVLFRLITVIGLLVGLSLAESEIEGVHNHGDETLIRMLQANRLLGISAEVDKSAVPSNTDEVHHAPSPLSSNSIAEFNLVLSDPRQSFYFLIAADFISLLAFLMTLVYFVRLSERKEEFRKQLQKAK 317          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A0R3U6M7 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS2442 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.772e-35
Identity = 95/269 (35.32%), Postives = 138/269 (51.30%), Query Frame = 3
Query:  186 SVKTEKKQAHILKQSIHIA---YHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLE----LSDSRWHAAKIMSIIGILTVISSIPIH--LLTSCYLKKWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIFSRKEIDVNAQ--EYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQ 959
             V  E K  H  K+    A   YH       +GLV  L G+S   +F I ++D R  P FH + V VGLF     +    N  + L  PLE    L + RW  AK  +II +L  + ++ IH  LL     ++ + W  +  EL    I VI +L+CLSLAESEIE +H+  D  L  ML  N L+     A+  T  N+  G         +A+  E+NLVLS P+ S+Y+ IA++F  L +FL  LV+F+R+S+ +E+ +  L K +
Sbjct:    7 GVNDEPKLRHQRKRPKRFAVGCYHTSAMLLIIGLVVALAGISSSYLFGIFVYDNRHPPLFHHISVHVGLFDIKGDITG--NGSDGLVVPLEYPPILEELRWLIAKASAIIALLFGVLALSIHAFLLCCSRNREDKPWGTVATELFSCLITVIGLLVCLSLAESEIEGVHNHGDETLVRMLQANKLLAFS--AQVDTLANQSGGEQDAPPPRPSAEVAEFNLVLSEPRRSFYVLIAADFVCLLAFLAMLVYFVRLSEREEQLRKQLQKAK 271          
BLAST of Expressed conserved protein vs. TrEMBL
Match: W6U8Q9 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_08300 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.862e-35
Identity = 93/265 (35.09%), Postives = 140/265 (52.83%), Query Frame = 3
Query:  198 EKKQAHILKQSIHIA---YHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNN--VNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHL-LTSCYLKKWRK-WWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIF-SRKEIDVNA-QEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQHD 965
            E +  H  K+    A   YH       +G+V  L GVS  ++F+I I+D R  P FH + + VGLF     +     N  V +L  P  L +  W  AK  S+IGI+  + ++ IH+ L  CY  +  K W  + +E+    I VI +L+ LSLAESEIE +H+  D  L  ML  N L+ I  E   S   +    +  +   +  N+  E+NLVLS P+ S+Y  IA++F +L +FL TLV+F+R+S+  E+ +  L K + D
Sbjct:   19 EPRLRHQRKRPRRCAIGCYHASAVILLIGVVVALAGVSSSRLFDIFIYDNRHPPLFHHISIHVGLFDVRGEITGNEANPVVEALAYPPVLDEPSWLTAKAASVIGIIFGLLALIIHVALLCCYRGREDKPWGTVAVEVLFRLITVIGLLVGLSLAESEIEGVHNHGDETLIRMLQANRLLGISAEVDKSAVPSNTDEVHHAPSPLSSNSIAEFNLVLSDPRQSFYFLIAADFISLLAFLMTLVYFVRLSERKEEFRKQLQKAKCD 283          
BLAST of Expressed conserved protein vs. TrEMBL
Match: A0A087W0E2 (Expressed conserved protein OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000190500 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.360e-35
Identity = 101/319 (31.66%), Postives = 160/319 (50.16%), Query Frame = 3
Query:   51 IRQRKTSEISIQ----SILRSTGFNF---PYKIY*LKYNLS*YINKSQI*IMSVKTEKKQAHILKQSIHIA---YHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNN--VNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHLLTSCYLK--KWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIF-SRKEIDVNA-QEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQ 959
            ++ R  S I +Q    ++L S G ++   P     L+      +NK+    +    E +  H  K+    A   YH       +G+V  L  VS  ++FEI I+D R  P FH + + VGLF     +     N  V +L  P  L +  W  AK  S+IGI+  + ++ IH+   CY +  + + W  + +E+    I VI +L+ LSLAESEIE +H+  D  L  ML  N L+ I  E   S   +    +  +   +  N+  E+NLVLS P+ S+Y  IA++F +L +FL TLV+F+R+S+  E+ +  L K +
Sbjct:    2 VKSRPKSYIKVQFTALALLTSPGESYLAIPRPDRSLRMAKDGRVNKNASGAVG-NGEPRLRHQRKRPRRCAIGCYHASAVILLIGVVVALASVSSSRLFEIFIYDNRHPPLFHHISIHVGLFDVRGEITGSEANPVVEALAYPPVLDEPSWLTAKAASVIGIIFGLLALIIHVALLCYYRGREDKPWGTVAVEVLFRLITVIGLLVGLSLAESEIEGVHNHGDETLIRMLQANRLLGICAEVDKSAVPSNTGEVHHAPSPLSSNSIAEFNLVLSDPRQSFYFLIAADFISLLAFLMTLVYFVRLSERKEEFRKQLQKAK 319          
BLAST of Expressed conserved protein vs. Planmine SMEST
Match: SMESG000024365.1 (SMESG000024365.1)

HSP 1 Score: 534.258 bits (1375), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 3
Query:  183 MSVKTEKKQAHILKQSIHIAYHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHLLTSCYLKKWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIFSRKEIDVNAQEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQHDRA 971
            MSVKTEKKQAHILKQSIHIAYHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHLLTSCYLKKWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIFSRKEIDVNAQEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQHDRA
Sbjct:    1 MSVKTEKKQAHILKQSIHIAYHVGCCAAFLGLVFLLIGVSLHQVFEILIFDQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLELSDSRWHAAKIMSIIGILTVISSIPIHLLTSCYLKKWRKWWIILLELSLLFIAVICILICLSLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIFSRKEIDVNAQEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEKGKGLLHKGQHDRA 263          
The following BLAST results are available for this feature:
BLAST of Expressed conserved protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4E0S4813.817e-3932.73Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A068WNW84.019e-3534.98Expressed conserved protein OS=Echinococcus granul... [more]
A0A0R3U6M77.772e-3535.32Uncharacterized protein OS=Mesocestoides corti OX=... [more]
W6U8Q98.862e-3535.09Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A087W0E29.360e-3531.66Expressed conserved protein OS=Echinococcus multil... [more]
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BLAST of Expressed conserved protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Expressed conserved protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000024365.10.000e+0100.00SMESG000024365.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022691 ID=SMED30022691|Name=Expressed conserved protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1129bp
CTCCTAACGATTTGAGGATTTATATGATTGAACATGAGCAAGCATGCACA
ATTAGGCAGAGAAAAACTTCTGAAATTTCCATCCAATCAATTTTAAGGTC
AACCGGTTTTAATTTTCCCTACAAAATTTATTGATTGAAATACAATTTGA
GCTGATATATAAATAAATCACAAATTTAAATCATGTCTGTTAAAACTGAG
AAGAAACAAGCTCATATTCTCAAACAGTCAATTCATATTGCGTATCATGT
TGGATGTTGCGCTGCATTTCTAGGACTAGTATTCTTATTAATTGGAGTTT
CTTTACACCAAGTATTTGAGATTCTGATTTTCGACCAGAGACAATCTCCA
ACATTTCATCAAGTAAAAGTGAAAGTAGGGCTATTTGGAAATACAGCTTT
ATTGATCGATCAATTGAACAATGTTAATAGCTTAAGAAAGCCTCTTGAAT
TATCAGATTCCCGATGGCACGCAGCAAAAATTATGTCCATAATTGGGATT
TTAACTGTCATATCCTCTATTCCAATACACTTACTGACAAGCTGCTACCT
AAAGAAATGGAGAAAGTGGTGGATTATTTTATTGGAACTATCATTGTTAT
TTATTGCAGTAATTTGTATTCTGATCTGTTTGTCACTGGCCGAGAGCGAG
ATAGAATTAATTCATGATTCCGACGACTATGATTTGAAATTGATGTTACA
CAGAAATGGATTGATGATCATTCAAAAAGAAGCGAGAGCGAGCACTTTTA
CAAATAAATTAACCGGAATTTTTAGTCGCAAGGAAATTGACGTTAATGCA
CAGGAATATAATCTTGTTTTATCTCCACCTCAAAGCAGCTATTATTTATT
TATTGCATCAGAATTTTTTACTCTATTTAGTTTTCTTTGTACTCTAGTTT
TTTTTATTCGAATAAGTGATTTGGATGAAAAAGGTAAGGGGTTACTTCAC
AAAGGCCAACATGACAGAGCATAACCATTCTTGTTAATCTGACTTATATT
TGTTTGTTATTATTTATTTATTTTTATAGATTTTATCTATTTATATTAAC
AATAGTGTTTATGTTTATAAAAATGATTACTGTAAATTTTATTTGATAAT
AACTATATTTATTTATAGCTCTATTATAA
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protein sequence of SMED30022691-orf-1

>SMED30022691-orf-1 ID=SMED30022691-orf-1|Name=SMED30022691-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=264bp
MSVKTEKKQAHILKQSIHIAYHVGCCAAFLGLVFLLIGVSLHQVFEILIF
DQRQSPTFHQVKVKVGLFGNTALLIDQLNNVNSLRKPLELSDSRWHAAKI
MSIIGILTVISSIPIHLLTSCYLKKWRKWWIILLELSLLFIAVICILICL
SLAESEIELIHDSDDYDLKLMLHRNGLMIIQKEARASTFTNKLTGIFSRK
EIDVNAQEYNLVLSPPQSSYYLFIASEFFTLFSFLCTLVFFIRISDLDEK
GKGLLHKGQHDRA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002089reproductive organ
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 220..242
NoneNo IPR availableTMHMMTMhelixcoord: 19..41
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 100..122