Semaphorin-like protein

Overview
NameSemaphorin-like protein
Smed IDSMED30022678
Length (bp)3065
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Semaphorin-like protein (SMED30022678) t-SNE clustered cells

Violin plots show distribution of expression levels for Semaphorin-like protein (SMED30022678) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Semaphorin-like protein (SMED30022678) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Semaphorin-like protein (SMED30022678) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022678

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30022678h1SMcG0022518 Contig37321newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30022678h1SMcG0022518 Contig37321uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
protonephridiaSMED30022678h1SMcG0022518 dd_Smed_v4_13490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30022678h1SMcG0022518 dd_Smed_v4_13490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022678h1SMcG0022518 dd_Smed_v4_13490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30022678h1SMcG0022518 dd_Smed_v4_13490_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30022678h1SMcG0022518 dd_Smed_v4_13490_0_1dd_Smed_v4PMID:30962434
Cote et al., 2019		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Semaphorin-like protein vs. TrEMBL
Match: A0A0K0LJ47 (Semaphorin-like protein (Fragment) OS=Schmidtea mediterranea OX=79327 GN=semal PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.824e-79
Identity = 134/291 (46.05%), Postives = 185/291 (63.57%), Query Frame = 1 
Query: 1924 RQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINLQIQCSS-YHKCIDCASDPICMWDISAVSCVDYYKDKFQDSLFIQDVLDRGFQCATAIKPKRQAIQSSDI---LLLNCSNIGFWRDDIKWTMNGEEITMGSVRDVHMFLDQKMILISNYSVNIHGNEIACHGIRTDYDKLFSGIEYSW--AKMSSEMMLDSYE 2778
            R++ SPLMIV I+S  G LYRVVLCDFD+ M     D  + +WYNWCIFR TDQPYLYR Y PME ++ G+S Q+RASSLL+++K+VT ++   FP NRDPQ  +VKD LR+GN +HV+T  NI ++N++I C+  Y  CIDCASDP CMW+     C+ Y + + Q    +QDVLDRGF+CA  IK   + + +      L + C+N  +WR +I+W +N E++         +  DQK + I    VN     + CHG++ D+DKLF+G EY W   +  S  +L  YE
Sbjct:    5 RKQFSPLMIVNIISTHGHLYRVVLCDFDNGMRNHGEDKSSGQWYNWCIFRFTDQPYLYRQYTPMESRKRGQSVQFRASSLLLDKKIVTSEDESRFPINRDPQFHVVKDVLRKGNHLHVITTNNIRTVNMEINCAKDYATCIDCASDPDCMWNNGNKKCIKYNEAESQKESIVQDVLDRGFKCAQFIKTTNENVDTRTSKLPLTIYCNNSEYWRGEIQWKIN-EKLVGNDPDQFIIHTDQKYLTI--LHVNNSIKSVKCHGVKEDHDKLFNGAEYDWITKRDYSTQLLSVYE 292
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BLAST of Semaphorin-like protein vs. Ensembl Cavefish
Match: sema4gb (semaphorin-4G [Source:NCBI gene;Acc:103025551])

HSP 1 Score: 51.2174 bits (121), Expect = 5.478e-6
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 1 
Query: 2254 RQGNTVHVVTGANIYSINLQIQCSSYHKCIDC--ASDPICMWDISAVSCVDYYKDKFQDSLFIQDVL--DRGFQCATA---IKPKRQAIQSSDILLLNC---SNIGFWRDDIKWTMNGEEI 2586
            R+  +V+V   + +  + L   C+ Y  C DC  A DP+C WD      +  Y DK   S   QDV   +RG    TA   +  + +++ + D +LL C   SN+   R    WT+NGE++
Sbjct:  484 RKQGSVYVSAASGVVQVPLSA-CARYTSCYDCVFARDPLCGWDGRQCVEISSYPDK---SNITQDVQMGNRGCDDMTADGLVSHRTRSVMAGDDVLLQCELHSNLAAPR----WTLNGEQL 596
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BLAST of Semaphorin-like protein vs. Planmine SMEST
Match: SMESG000009925.1 (SMESG000009925.1)

HSP 1 Score: 1173.69 bits (3035), Expect = 0.000e+0
Identity = 560/580 (96.55%), Postives = 566/580 (97.59%), Query Frame = 1 
Query:  598 MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINLQI-QCSSYH 2334
            MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQ  +V + T   I  +++ +  CS Y 
Sbjct:    1 MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQAFSVDINTLKFIKFVDVNVMSCSRYE 580

HSP 2 Score: 213.386 bits (542), Expect = 4.070e-57
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1 
Query: 1234 ADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGK--RNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFN 1809
             DV+FDP R+I+  TK  + + GCT + H QIPL+G+FN  GL+ T V+P GALCQLQIN N+F E+GS +  Y   N   V+NAY++IM  SST+ SNFYSRT HR+NG++  P+WNQGV IG   R   F      VGKC  P  Y  +    FL+ Q+FSN AWPNELPNRL+S+SS  CQYSA E+  F+
Sbjct:  643 TDVIFDPDRKIRFSTKSGDSSLGCTGKMHEQIPLVGIFNREGLSGTNVEPSGALCQLQINENIFVEMGSQREQYRVQNYNGVENAYEDIMRFSSTSYSNFYSRTIHRTNGYTLHPYWNQGVSIGGSYRERPFAE----VGKCQTPSFYKNLNAEKFLKIQNFSNLAWPNELPNRLSSISSSFCQYSAAEVLIFH 832

HSP 3 Score: 170.244 bits (430), Expect = 4.687e-43
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:  538 RAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNF 819
            +AFSV  N L F+KFVDVNVMSC+RYEDEPM TY+D LNN YVASGWGLYRP KKDPDVPDNNSTMLYADW+LYRNLFTLPS+MAWVLS+DV F
Sbjct:  554 QAFSVDINTLKFIKFVDVNVMSCSRYEDEPMVTYRDKLNNLYVASGWGLYRPDKKDPDVPDNNSTMLYADWKLYRNLFTLPSAMAWVLSTDVIF 647
[Close]
BLAST of Semaphorin-like protein vs. Planmine SMEST
Match: SMESG000016292.1 (SMESG000016292.1)

HSP 1 Score: 1007.28 bits (2603), Expect = 0.000e+0
Identity = 476/879 (54.15%), Postives = 630/879 (71.67%), Query Frame = 1 
Query:  124 FSMIKELNGVIYVGGKNTLSAYKSDGKNLNLIMTKTYSWPVSIMNGSGIELGSVFLRWPSNLKNISTSLIFDACLNWKQENQNQSERSEYLDYHHSHYHTPSGDWITMNFVCMNSFIKSVEESTDETLTVCGTFGSFPRAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRA-MSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGK--RNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINLQIQCSS-YHKCIDCASDPICMWDISAVSCVDYYKDKFQDSLFIQDVLDRGFQCATAIKPKRQAIQSSD---ILLLNCSNIGFWRDDIKWTMNGEEITMGSVRDVHMFLDQKMILISNYSVNIHGNEIACHGIRTDYDKLFSGIEYSW 2739
            +S++KE++GV+YVGG+N+LS+Y+S  + L  ++ +TY +P  I NGS I      L +PS + N  TSL FD CLNWKQ + N S R+   DY H +YHTPSGDW TM+F+CMNSFIK +E+  + TL VCGTFGSFPRAFSV K++L F+KF+DVN+MSCARY DEPM +Y+D L+N Y+ SGWGLY+P K +PDVP+NNSTM+Y+DWRL+RNLFTLPS+MAWVLSSDV+FINVVKET+ HLYFFGHEINNQYGLNNQEDR+AWQSFM+RICK D GFK VP +   ++   + + Y +      D+T+S  HD A  +  W+  T+HLPTKHF +  K+NFGCYIG+RPR+ISDN++WG+TNV+Y+N L DV+FDP + IK +TK  N  FGC+ E H QIPLIG+FN+PG+  T +   GALCQLQINSN+F+E+GS K PYH  N+L   +AY+E+M L+S +VSNFYSRT HR++G +  P+WNQGVLIG       + +  D +GKC N   +  +T + FL+  +FSNT WPNELPNRL+S+ S +CQ+SA ELYSFNAT L+PG EF+ +F++ DN TNY+M++L     E    R+  SPLM V I+S  G LYRVVLCDFD+ M     D  + +WYNWCIFR TDQPYLYR Y PME ++ G+S Q+RASSLL+++K+VT ++   FP NRDPQ  +VKD LR+GN +HV+T  NI ++N++I C+  Y  CIDCASDP CMW+     C+ Y + + Q    +QDVLDRGF+CA  IK   + + +      L + C+N  +WR +I+W +N E++         +  DQK + I    VN     + CHG++ D+DKLF+G EY W
Sbjct:   13 YSVVKEIDGVVYVGGRNSLSSYQSINEKLLPLVNETYKFPPEIFNGSDIGFEFKILEFPSEITNNPTSLAFDTCLNWKQNHLNDSYRNSAFDYQHRNYHTPSGDWETMDFICMNSFIKGIEKLDNTTLWVCGTFGSFPRAFSVWKDSLKFIKFIDVNLMSCARYTDEPMVSYRDQLDNLYIGSGWGLYKPDKSNPDVPNNNSTMMYSDWRLFRNLFTLPSAMAWVLSSDVHFINVVKETEKHLYFFGHEINNQYGLNNQEDRNAWQSFMVRICKNDVGFKSVPMKEAWLMRHMSGHFYNIGSIGEFDYTLSPTHDEAGHNPDWFHNTVHLPTKHFTSSQKINFGCYIGKRPRSISDNYFWGQTNVLYLNMLVDVIFDPNKTIKFKTKNNNKYFGCSKEPHEQIPLIGLFNSPGIRGTAMSSTGALCQLQINSNIFNEIGSKKKPYHLTNILKANDAYEELMLLNSVSVSNFYSRTLHRTSGLTIYPYWNQGVLIGDNVHRKYYKNVFDNIGKCQNSSFFKTLTKDKFLKIMNFSNTGWPNELPNRLSSIPSAVCQFSAAELYSFNATVLIPGVEFRNVFLVADNITNYYMHELEIATTENPGHRKIFSPLMTVIIISTHGHLYRVVLCDFDNGMRNHGEDKSSGQWYNWCIFRFTDQPYLYRQYTPMESRKRGQSVQFRASSLLLDKKIVTSEDESRFPINRDPQFHVVKDVLRKGNHLHVITTNNIRTVNMEINCAKDYATCIDCASDPDCMWNNGNKKCIKYNEAESQKESIVQDVLDRGFKCAKFIKAANENVDTRTNKLPLTIYCNNSEYWRGEIQWKIN-EKLVGNDPDQFIIHTDQKYLTI--LHVNNSIKSVKCHGVKEDHDKLFNGAEYDW 888
[Close]
BLAST of Semaphorin-like protein vs. Planmine SMEST
Match: SMESG000016292.1 (SMESG000016292.1)

HSP 1 Score: 1006.9 bits (2602), Expect = 0.000e+0
Identity = 476/879 (54.15%), Postives = 630/879 (71.67%), Query Frame = 1 
Query:  124 FSMIKELNGVIYVGGKNTLSAYKSDGKNLNLIMTKTYSWPVSIMNGSGIELGSVFLRWPSNLKNISTSLIFDACLNWKQENQNQSERSEYLDYHHSHYHTPSGDWITMNFVCMNSFIKSVEESTDETLTVCGTFGSFPRAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRA-MSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGK--RNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINLQIQCSS-YHKCIDCASDPICMWDISAVSCVDYYKDKFQDSLFIQDVLDRGFQCATAIKPKRQAIQSSD---ILLLNCSNIGFWRDDIKWTMNGEEITMGSVRDVHMFLDQKMILISNYSVNIHGNEIACHGIRTDYDKLFSGIEYSW 2739
            +S++KE++GV+YVGG+N+LS+Y+S  + L  ++ +TY +P  I NGS I      L +PS + N  TSL FD CLNWKQ + N S R+   DY H +YHTPSGDW TM+F+CMNSFIK +E+  + TL VCGTFGSFPRAFSV K++L F+KF+DVN+MSCARY DEPM +Y+D L+N Y+ SGWGLY+P K +PDVP+NNSTM+Y+DWRL+RNLFTLPS+MAWVLSSDV+FINVVKET+ HLYFFGHEINNQYGLNNQEDR+AWQSFM+RICK D GFK VP +   ++   + + Y +      D+T+S  HD A  +  W+  T+HLPTKHF +  K+NFGCYIG+RPR+ISDN++WG+TNV+Y+N L DV+FDP + IK +TK  N  FGC+ E H QIPLIG+FN+PG+  T +   GALCQLQINSN+F+E+GS K PYH  N+L   +AY+E+M L+S +VSNFYSRT HR++G +  P+WNQGVLIG       + +  D +GKC N   +  +T + FL+  +FSNT WPNELPNRL+S+ S +CQ+SA ELYSFNAT L+PG EF+ +F++ DN TNY+M++L     E    R+  SPLM V I+S  G LYRVVLCDFD+ M     D  + +WYNWCIFR TDQPYLYR Y PME ++ G+S Q+RASSLL+++K+VT ++   FP NRDPQ  +VKD LR+GN +HV+T  NI ++N++I C+  Y  CIDCASDP CMW+     C+ Y + + Q    +QDVLDRGF+CA  IK   + + +      L + C+N  +WR +I+W +N E++         +  DQK + I    VN     + CHG++ D+DKLF+G EY W
Sbjct:   19 YSVVKEIDGVVYVGGRNSLSSYQSINEKLLPLVNETYKFPPEIFNGSDIGFEFKILEFPSEITNNPTSLAFDTCLNWKQNHLNDSYRNSAFDYQHRNYHTPSGDWETMDFICMNSFIKGIEKLDNTTLWVCGTFGSFPRAFSVWKDSLKFIKFIDVNLMSCARYTDEPMVSYRDQLDNLYIGSGWGLYKPDKSNPDVPNNNSTMMYSDWRLFRNLFTLPSAMAWVLSSDVHFINVVKETEKHLYFFGHEINNQYGLNNQEDRNAWQSFMVRICKNDVGFKSVPMKEAWLMRHMSGHFYNIGSIGEFDYTLSPTHDEAGHNPDWFHNTVHLPTKHFTSSQKINFGCYIGKRPRSISDNYFWGQTNVLYLNMLVDVIFDPNKTIKFKTKNNNKYFGCSKEPHEQIPLIGLFNSPGIRGTAMSSTGALCQLQINSNIFNEIGSKKKPYHLTNILKANDAYEELMLLNSVSVSNFYSRTLHRTSGLTIYPYWNQGVLIGDNVHRKYYKNVFDNIGKCQNSSFFKTLTKDKFLKIMNFSNTGWPNELPNRLSSIPSAVCQFSAAELYSFNATVLIPGVEFRNVFLVADNITNYYMHELEIATTENPGHRKIFSPLMTVIIISTHGHLYRVVLCDFDNGMRNHGEDKSSGQWYNWCIFRFTDQPYLYRQYTPMESRKRGQSVQFRASSLLLDKKIVTSEDESRFPINRDPQFHVVKDVLRKGNHLHVITTNNIRTVNMEINCAKDYATCIDCASDPDCMWNNGNKKCIKYNEAESQKESIVQDVLDRGFKCAKFIKAANENVDTRTNKLPLTIYCNNSEYWRGEIQWKIN-EKLVGNDPDQFIIHTDQKYLTI--LHVNNSIKSVKCHGVKEDHDKLFNGAEYDW 894
[Close]
BLAST of Semaphorin-like protein vs. Planmine SMEST
Match: SMESG000016292.1 (SMESG000016292.1)

HSP 1 Score: 996.497 bits (2575), Expect = 0.000e+0
Identity = 476/905 (52.60%), Postives = 629/905 (69.50%), Query Frame = 1 
Query:  124 FSMIKELNGVIYVGGKNTLSAYKSDGKNLNLIMTKTYSWPVSIMNGSGIELGSVFLRWPSNLKNISTSLIFDACLNWKQENQNQSERSEYLDYHHSHYHTPSGDWITMNFVCMNSFIKSVEESTDETLTVCGTFGSFPRAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRA-MSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGK--RNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINLQIQCSS-YHKCIDCASDPICMWDISAVSCVDYYKDKFQDSLFIQDVLDRGFQCATAIKPKRQAIQSSD---ILLLNCSNIGFWRDDIKWTMNG--------------------------EEITMGSVRDVHMFLDQKMILISNYSVNIHGNEIACHGIRTDYDKLFSGIEYSW 2739
            +S++KE++GV+YVGG+N+LS+Y+S  + L  ++ +TY +P  I NGS I      L +PS + N  TSL FD CLNWKQ + N S R+   DY H +YHTPSGDW TM+F+CMNSFIK +E+  + TL VCGTFGSFPRAFSV K++L F+KF+DVN+MSCARY DEPM +Y+D L+N Y+ SGWGLY+P K +PDVP+NNSTM+Y+DWRL+RNLFTLPS+MAWVLSSDV+FINVVKET+ HLYFFGHEINNQYGLNNQEDR+AWQSFM+RICK D GFK VP +   ++   + + Y +      D+T+S  HD A  +  W+  T+HLPTKHF +  K+NFGCYIG+RPR+ISDN++WG+TNV+Y+N L DV+FDP + IK +TK  N  FGC+ E H QIPLIG+FN+PG+  T +   GALCQLQINSN+F+E+GS K PYH  N+L   +AY+E+M L+S +VSNFYSRT HR++G +  P+WNQGVLIG       + +  D +GKC N   +  +T + FL+  +FSNT WPNELPNRL+S+ S +CQ+SA ELYSFNAT L+PG EF+ +F++ DN TNY+M++L     E    R+  SPLM V I+S  G LYRVVLCDFD+ M     D  + +WYNWCIFR TDQPYLYR Y PME ++ G+S Q+RASSLL+++K+VT ++   FP NRDPQ  +VKD LR+GN +HV+T  NI ++N++I C+  Y  CIDCASDP CMW+     C+ Y + + Q    +QDVLDRGF+CA  IK   + + +      L + C+N  +WR +I+W +N                            E+         +  DQK + I    VN     + CHG++ D+DKLF+G EY W
Sbjct:   13 YSVVKEIDGVVYVGGRNSLSSYQSINEKLLPLVNETYKFPPEIFNGSDIGFEFKILEFPSEITNNPTSLAFDTCLNWKQNHLNDSYRNSAFDYQHRNYHTPSGDWETMDFICMNSFIKGIEKLDNTTLWVCGTFGSFPRAFSVWKDSLKFIKFIDVNLMSCARYTDEPMVSYRDQLDNLYIGSGWGLYKPDKSNPDVPNNNSTMMYSDWRLFRNLFTLPSAMAWVLSSDVHFINVVKETEKHLYFFGHEINNQYGLNNQEDRNAWQSFMVRICKNDVGFKSVPMKEAWLMRHMSGHFYNIGSIGEFDYTLSPTHDEAGHNPDWFHNTVHLPTKHFTSSQKINFGCYIGKRPRSISDNYFWGQTNVLYLNMLVDVIFDPNKTIKFKTKNNNKYFGCSKEPHEQIPLIGLFNSPGIRGTAMSSTGALCQLQINSNIFNEIGSKKKPYHLTNILKANDAYEELMLLNSVSVSNFYSRTLHRTSGLTIYPYWNQGVLIGDNVHRKYYKNVFDNIGKCQNSSFFKTLTKDKFLKIMNFSNTGWPNELPNRLSSIPSAVCQFSAAELYSFNATVLIPGVEFRNVFLVADNITNYYMHELEIATTENPGHRKIFSPLMTVIIISTHGHLYRVVLCDFDNGMRNHGEDKSSGQWYNWCIFRFTDQPYLYRQYTPMESRKRGQSVQFRASSLLLDKKIVTSEDESRFPINRDPQFHVVKDVLRKGNHLHVITTNNIRTVNMEINCAKDYATCIDCASDPDCMWNNGNKKCIKYNEAESQKESIVQDVLDRGFKCAKFIKAANENVDTRTNKLPLTIYCNNSEYWRGEIQWKINEIVQFYDFIFLVEIYFFPILLISFHNVAELVGNDPDQFIIHTDQKYLTI--LHVNNSIKSVKCHGVKEDHDKLFNGAEYDW 915
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BLAST of Semaphorin-like protein vs. Planmine SMEST
Match: SMESG000009925.1 (SMESG000009925.1)

HSP 1 Score: 957.592 bits (2474), Expect = 0.000e+0
Identity = 478/571 (83.71%), Postives = 490/571 (85.81%), Query Frame = 1 
Query:  598 MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCDFDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYRASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYSINL 2310
            MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHM+                         ++   LYR         ME++++                 + Y YR                 ASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQ    HV+  A++ S +L
Sbjct:    1 MSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTDQGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIFILQDNYTNYHMH-------------------------TDQPYLYRNY-----EPMEKKEY----------------GESYQYR-----------------ASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQN---HVLALASVVSDSL 505

HSP 2 Score: 305.064 bits (780), Expect = 1.859e-88
Identity = 143/259 (55.21%), Postives = 182/259 (70.27%), Query Frame = 1 
Query: 1042 DFTISLLHDRA-MSESWYSTTMHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFDPQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQLQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYHRSNGFSFDPFWNQGVLIGK--RNSSFISWLDTVGKCYNPLQYDQITINDFLRFQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFN 1809
            DF +SL H+    +  WY  T HLP  HF+ P+K+NFGCYIGRRPR ISDNH+WG+TNV+Y+N+LADV+FDP R+I+  TK  + + GCT + H QIPL+G+FN  GL+ T V+P GALCQLQIN N+F E+GS +  Y   N   V+NAY++IM  SST+ SNFYSRT HR+NG++  P+WNQGV IG   R   F      VGKC  P  Y  +    FL+ Q+FSN AWPNELPNRL+S+SS  CQYSA E+  F+
Sbjct:  651 DFMVSLTHEYIDFNSDWYDGTAHLPKTHFVTPIKVNFGCYIGRRPRGISDNHHWGDTNVIYMNQLADVIFDPDRKIRFSTKSGDSSLGCTGKMHEQIPLVGIFNREGLSGTNVEPSGALCQLQINENIFVEMGSQREQYRVQNYNGVENAYEDIMRFSSTSYSNFYSRTIHRTNGYTLHPYWNQGVSIGGSYRERPFAE----VGKCQTPSFYKNLNAEKFLKIQNFSNLAWPNELPNRLSSISSSFCQYSAAEVLIFH 905

HSP 3 Score: 166.007 bits (419), Expect = 1.306e-41
Identity = 79/109 (72.48%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:  520 TFGSFPRAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDALNNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVLSSDVNF-INVVKETD 843
            T+     AFSV  N L F+KFVDVNVMSC+RYEDEPM TY+D LNN YVASGWGLYRP KKDPDVPDNNSTMLYADW+LYRNLFTLPS+MAWVLS+ +   IN+  + D
Sbjct:  543 TYRPMLNAFSVDINTLKFIKFVDVNVMSCSRYEDEPMVTYRDKLNNLYVASGWGLYRPDKKDPDVPDNNSTMLYADWKLYRNLFTLPSAMAWVLSTRILLRINISVQED 651
The following BLAST results are available for this feature:
BLAST of Semaphorin-like protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K0LJ472.824e-7946.05Semaphorin-like protein (Fragment) OS=Schmidtea me... [more]
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BLAST of Semaphorin-like protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
sema4gb5.478e-631.40semaphorin-4G [Source:NCBI gene;Acc:103025551][more]
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BLAST of Semaphorin-like protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Semaphorin-like protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000009925.14.070e-5796.55SMESG000009925.1[more]
SMESG000016292.10.000e+054.15SMESG000016292.1[more]
SMESG000016292.10.000e+054.15SMESG000016292.1[more]
SMESG000016292.10.000e+052.60SMESG000016292.1[more]
SMESG000009925.11.859e-8883.71SMESG000009925.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022678 ID=SMED30022678|Name=Semaphorin-like protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3065bp
GAGATTTATTTTCGTTTATTTGTTTATATTTCAACTCGAGTCATTTAAAC
AATGAATATTTTTTCTTTTCGGCTGTTTTTGTTTTTGTTGGCATTCGACT
TTGTGGTTGATTCAGTTTGGGGATTCTCGATGATCAAGGAATTAAATGGC
GTGATATACGTCGGCGGAAAAAACACTTTATCGGCTTACAAAAGTGACGG
CAAAAATTTGAACCTCATCATGACGAAGACATATTCATGGCCTGTTTCTA
TAATGAACGGATCAGGCATTGAACTTGGGTCAGTATTCCTAAGGTGGCCG
TCGAATTTAAAAAATATTAGCACTTCACTAATTTTTGATGCCTGTTTGAA
TTGGAAGCAGGAAAATCAAAATCAATCTGAGAGATCAGAATATTTAGATT
ATCATCATTCCCATTATCATACCCCAAGCGGAGACTGGATCACTATGAAT
TTTGTCTGCATGAACAGTTTCATCAAATCTGTGGAAGAATCGACTGACGA
AACTCTAACGGTATGTGGAACCTTCGGATCTTTTCCAAGAGCTTTCTCGG
TAGGAAAAAACAATTTAACGTTCCTAAAGTTTGTGGACGTCAATGTGATG
AGCTGCGCAAGATATGAGGATGAGCCAATGGCAACGTACAAAGATGCTTT
AAACAATTCGTATGTAGCTTCAGGTTGGGGTCTTTATCGACCGGCCAAGA
AGGATCCAGATGTTCCAGATAATAATTCAACTATGCTTTATGCTGACTGG
AGATTGTATAGGAACTTATTTACTCTGCCTTCCTCCATGGCTTGGGTTTT
ATCAAGCGATGTCAATTTCATAAATGTGGTCAAGGAAACTGATACACATT
TGTACTTTTTCGGCCATGAAATAAATAACCAATATGGTCTAAACAATCAG
GAAGACAGACACGCTTGGCAGAGTTTCATGTTGAGGATCTGCAAAACTGA
CCAAGGGTTCAAATATGTACCGAATGAAATTGGGACGATTCTCACTTCCA
ACACAAATTACAAATATTACGTTTATAGAGAAAGTGGCAGTGACTTTACA
ATTTCCCTTTTACACGACCGCGCAATGAGCGAGTCTTGGTATAGCACTAC
AATGCACCTCCCGACAAAGCACTTCCTGAATCCTCTGAAAATGAATTTCG
GCTGCTACATCGGAAGGAGACCTCGAGCTATTAGCGATAACCATTATTGG
GGTGAAACGAATGTTGTTTATATAAATAAATTAGCTGATGTTGTTTTCGA
TCCGCAAAGAAGGATCAAGGTTCAAACAAAACCTGAAAACGACACGTTTG
GATGTACAAACGAGACTCATTCTCAAATACCCTTAATCGGTGTTTTCAAT
GCTCCTGGACTAACTGAGACACAGGTGAAACCTGTCGGAGCTCTCTGCCA
GTTACAAATAAACTCAAACATGTTTCATGAAGTCGGTTCCAGTAAAAGTC
CTTATCATCAATACAATCTGCTCAATGTCCAAAATGCTTATCAAGAAATA
ATGGCGTTGAGTTCGACAACAGTTTCCAACTTTTACAGTAGAACTTATCA
TCGGTCAAATGGTTTCAGTTTTGATCCATTCTGGAATCAAGGAGTTTTGA
TAGGAAAACGCAATTCATCCTTCATTAGTTGGTTGGATACGGTTGGGAAA
TGCTACAATCCTTTGCAGTATGACCAAATCACAATAAATGATTTTCTACG
TTTTCAGGATTTTTCCAACACTGCTTGGCCTAATGAATTGCCAAACAGAC
TCACTTCAATGAGTTCGGTCATTTGTCAGTATTCTGCGGTTGAGCTCTAC
AGCTTCAATGCAACCTTTCTAGTTCCAGGAGAAGAATTCAAAAAGATTTT
CATTTTACAAGATAATTATACAAACTATCACATGAATAAACTCTTAAATG
AAGATGACGAGCAGCGAGTTATGAGACAGGAAAGTTCGCCTCTAATGATA
GTAGCTATACTCTCAAATTCTGGAATCTTGTATCGTGTGGTTTTGTGTGA
TTTTGACAGCGCGATGGAAAGACGCCAGCATGACGGAATAAATGCCGAAT
GGTATAACTGGTGTATATTTAGGCATACTGATCAGCCCTATCTCTATCGC
AACTATGAACCGATGGAGAAAAAAGAATACGGTGAATCATATCAATATAG
GGCTAGCTCTTTATTAATGGAACAAAAGGTGGTTACAAAGAAAGAATCAC
TTTATTTCCCAAATAACAGAGATCCTCAACTAGATATAGTTAAAGATGCT
TTAAGACAAGGAAATACTGTACATGTTGTAACGGGTGCTAATATTTATTC
AATTAATTTGCAAATCCAGTGCTCCTCATACCACAAATGCATTGACTGTG
CTAGTGACCCGATTTGTATGTGGGACATTTCCGCTGTCAGTTGCGTGGAT
TACTACAAAGATAAATTTCAAGATTCTTTATTTATACAAGACGTACTTGA
CAGAGGATTTCAATGCGCCACAGCCATAAAGCCGAAAAGACAGGCCATCC
AATCGTCTGACATACTGTTGCTCAACTGTTCCAACATAGGGTTTTGGAGA
GATGACATTAAATGGACTATGAATGGAGAAGAAATTACCATGGGCAGCGT
TAGAGATGTCCATATGTTTCTAGATCAAAAGATGATACTCATTTCAAATT
ATTCTGTTAATATACACGGAAATGAGATTGCTTGCCACGGAATTCGAACT
GACTATGATAAATTATTCAGTGGAATAGAATATTCGTGGGCAAAGATGTC
ATCAGAAATGATGCTGGATAGTTATGAAATAATACCAAAAATAAAAAATG
ATTCAAAGATCCCTTGGCAGGGAGTCAGCATTTTCTTCATCATCCTATCA
ATTGGCATGTGTATTGGAATTATACTTCAATTCTTTAAATTAAAAATCAT
TAATCAAGTTTCTCAATTGAAATCAGATGTAAATGGAATGCAGAATAAAA
GTCCATCTCCAAATGACTCTGATTTGAAGATGTTCCCAAATTAACCGGAA
GTTTTGAAATGAATTCGAAAAATCTAAATCATTTCATTATATATTTTTGA
CAACATTTTTTTACA
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protein sequence of SMED30022678-orf-1

>SMED30022678-orf-1 ID=SMED30022678-orf-1|Name=SMED30022678-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=981bp
MNIFSFRLFLFLLAFDFVVDSVWGFSMIKELNGVIYVGGKNTLSAYKSDG
KNLNLIMTKTYSWPVSIMNGSGIELGSVFLRWPSNLKNISTSLIFDACLN
WKQENQNQSERSEYLDYHHSHYHTPSGDWITMNFVCMNSFIKSVEESTDE
TLTVCGTFGSFPRAFSVGKNNLTFLKFVDVNVMSCARYEDEPMATYKDAL
NNSYVASGWGLYRPAKKDPDVPDNNSTMLYADWRLYRNLFTLPSSMAWVL
SSDVNFINVVKETDTHLYFFGHEINNQYGLNNQEDRHAWQSFMLRICKTD
QGFKYVPNEIGTILTSNTNYKYYVYRESGSDFTISLLHDRAMSESWYSTT
MHLPTKHFLNPLKMNFGCYIGRRPRAISDNHYWGETNVVYINKLADVVFD
PQRRIKVQTKPENDTFGCTNETHSQIPLIGVFNAPGLTETQVKPVGALCQ
LQINSNMFHEVGSSKSPYHQYNLLNVQNAYQEIMALSSTTVSNFYSRTYH
RSNGFSFDPFWNQGVLIGKRNSSFISWLDTVGKCYNPLQYDQITINDFLR
FQDFSNTAWPNELPNRLTSMSSVICQYSAVELYSFNATFLVPGEEFKKIF
ILQDNYTNYHMNKLLNEDDEQRVMRQESSPLMIVAILSNSGILYRVVLCD
FDSAMERRQHDGINAEWYNWCIFRHTDQPYLYRNYEPMEKKEYGESYQYR
ASSLLMEQKVVTKKESLYFPNNRDPQLDIVKDALRQGNTVHVVTGANIYS
INLQIQCSSYHKCIDCASDPICMWDISAVSCVDYYKDKFQDSLFIQDVLD
RGFQCATAIKPKRQAIQSSDILLLNCSNIGFWRDDIKWTMNGEEITMGSV
RDVHMFLDQKMILISNYSVNIHGNEIACHGIRTDYDKLFSGIEYSWAKMS
SEMMLDSYEIIPKIKNDSKIPWQGVSIFFIILSIGMCIGIILQFFKLKII
NQVSQLKSDVNGMQNKSPSPNDSDLKMFPN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001627Semap_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.1680.10coord: 594..647
e-value: 3.3E-6
score: 29.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 798..817
NoneNo IPR availableTMHMMTMhelixcoord: 757..779