U3 small nucleolar ribonucleoprotein protein IMP4

Overview
NameU3 small nucleolar ribonucleoprotein protein IMP4
Smed IDSMED30022640
Length (bp)1069
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of U3 small nucleolar ribonucleoprotein protein IMP4 (SMED30022640) t-SNE clustered cells

Violin plots show distribution of expression levels for U3 small nucleolar ribonucleoprotein protein IMP4 (SMED30022640) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of U3 small nucleolar ribonucleoprotein protein IMP4 (SMED30022640) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for U3 small nucleolar ribonucleoprotein protein IMP4 (SMED30022640) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022640

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30022640SMESG000020293.1 SmedASXL_019652SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30022640SMESG000020293.1 Contig52819newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30022640SMESG000020293.1 Contig52819uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 221.476 bits (563), Expect = 8.655e-70
Identity = 122/292 (41.78%), Postives = 185/292 (63.36%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +    + K+ L +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 211.075 bits (536), Expect = 1.650e-66
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 3 
Query:  282 DDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   17 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 234
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 212.616 bits (540), Expect = 1.984e-66
Identity = 115/259 (44.40%), Postives = 167/259 (64.48%), Query Frame = 3 
Query:  204 LKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   35 LRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 278
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 184.496 bits (467), Expect = 6.808e-56
Identity = 101/239 (42.26%), Postives = 152/239 (63.60%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSK 818
            + RK +E+ +    + K+ L +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K + +
Sbjct:   13 LYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Match: IMP4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856])

HSP 1 Score: 147.132 bits (370), Expect = 1.926e-42
Identity = 77/186 (41.40%), Postives = 113/186 (60.75%), Query Frame = 3 
Query:  324 LITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLF 878
            +ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K + +       + + GP+F L+L+
Sbjct:    1 MITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVE----LTEVGPRFELKLY 171
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Celegans
Match: ZK795.3 (Brix domain-containing protein ZK795.3 [Source:UniProtKB/Swiss-Prot;Acc:O62518])

HSP 1 Score: 202.986 bits (515), Expect = 5.794e-63
Identity = 111/302 (36.75%), Postives = 169/302 (55.96%), Query Frame = 3 
Query:   81 RHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESN---DVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            R + R R + I RK  E+++  L + ++ +  ++E+N   D + L+K A+ +     W     +      D EY+WAG +DPK++ITT+RDPSS L+ F+KE+  + PN+QR+NRG+  V+ +      +  TDLII  E RG P  + + H P GPT  FS+ +VV+RH           +     +  QYP L+F    S LG R   IL +LFPVPKPDS RI+ F   ED+I F++     EN  E    + + + GP+F L+ +++  G L+    +E E+  + Y NT+RKR FLS
Sbjct:    3 RRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYN-LRKDAIELAKGSDWGGQQYET-----DSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHD----------IPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTENDGE----VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFLS 284
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Celegans
Match: F44G4.1 (Brix domain-containing protein F44G4.1 [Source:UniProtKB/Swiss-Prot;Acc:P54073])

HSP 1 Score: 95.9005 bits (237), Expect = 7.451e-22
Identity = 68/222 (30.63%), Postives = 107/222 (48.20%), Query Frame = 3 
Query:  315 PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPY-MNTSRKRKFL 974
            PKV+IT          +F  EL   IPNS+   R N  ++ I  +  + + TDL+++ E R  P  +   H P GPT  F +  +      DL+   +S         + +P ++     + LG  +  +L  LFP  PK    R+V F+ Q D+I F++    +   K+ G K  + + GP+FTL+L  L +G   + K  E E+  K + M TSR+R FL
Sbjct:  177 PKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQ--DLKKFGEST--------SHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRH---HRYEFKKEGSKAALLELGPRFTLRLKWLQKGTF-DAKWGEFEWVLKRHEMETSRRRFFL 384
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Fly
Match: CG11920 (gene:FBgn0039274 transcript:FBtr0084769)

HSP 1 Score: 190.66 bits (483), Expect = 4.254e-58
Identity = 91/232 (39.22%), Postives = 142/232 (61.21%), Query Frame = 3 
Query:  282 DDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            +DEY +AG EDPK+++TT+ +PSS L+ F KEL  +IPN+Q+MNRGN  +  + + C    +TD +I+ E RG+P  L + H P+GPT  F++ DVV+RH           +     +  Q P L+F    +P+G R   IL +LFPVPK +S R++ F    D I+F++        K   K+L + + GP+F+L+L+++  G L+N K ++ E+ ++PYMNTS+KR   S
Sbjct:   70 NDEYHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRGNYQLTTLMHACRANNVTDFLIVHEHRGIPDSLVVCHLPYGPTAFFNISDVVMRHD----------IPDIGHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPVPKENSQRVMSFLNHNDSIIFRH-----HQYKYVNKELELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKRLIFS 286
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Fly
Match: CG6712 (gene:FBgn0032408 transcript:FBtr0080364)

HSP 1 Score: 96.6709 bits (239), Expect = 4.886e-22
Identity = 75/238 (31.51%), Postives = 123/238 (51.68%), Query Frame = 3 
Query:  270 LSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLF-PVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEY--AHKPYMNTSRKRKFL 974
            L ++D    +    +PKVLIT A +P +  R+F  EL  + PN+    R  ++V+ I     +E+ TD++I+ E R  P  L + H P+GPT  F L +V L    D++  +K   K +       P ++    T+ LG  +  +L  LF   P+    R V F+ Q D+I F++     E +KE GK++ + + GP+FTL+L  L  G   + KT +  +  ++K +   SR+R FL
Sbjct:  170 LQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKL--TSDIKRDHKEITKHR-------PEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRY--EFTKE-GKRVKLRELGPRFTLKLRSLQEGTF-DSKTGDYAWIISNKRHAMESRRRFFL 394
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 236.498 bits (602), Expect = 9.378e-76
Identity = 124/303 (40.92%), Postives = 191/303 (63.04%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
             R + R R + + RK QE R   + + KQ L  +++ N +  + ++K AL +   + +DD G +G+ S  DDEY+WAGVEDPK+++TT+RDPSS L+ F+KE+  + P +QRMNRGN  V+ + + C    +TDL+I+ E RG P  L + H P GPT  F++ +VV+RH + D+ T +++           YP L+F   TS LG+R+ NIL YLFPVPK DS R++ F   +D+I F++ T  K +     K + + + GP+F ++L+ +  G L+NE T++VE+ H PY  T++KRKFLS
Sbjct:    2 LRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALEVQKLLEFDDEGGEGVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMNRGNHEVKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVMRHDVPDIGTMSEA-----------YPHLIFHNFTSRLGRRVSNILKYLFPVPKEDSRRVITFANTDDYISFRHHTYKKTDH----KNVELTEVGPRFEMKLYMIKLGTLENESTADVEWRHHPYTRTAKKRKFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 100.523 bits (249), Expect = 1.832e-23
Identity = 69/222 (31.08%), Postives = 111/222 (50.00%), Query Frame = 3 
Query:  312 DPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKF 971
            +PKVLITT+  P     +F  +L  VIP++    R    ++ +  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M          K + K PT++ P ++    T+ LG  +  +   LFP  P+    ++  F+ Q D I F+      +N K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK +   S +RKF
Sbjct:  144 NPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEM----------KRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG----IQELGPRFTLKLRSLQKGTF-DSKFGEYEWVHKRHEMDSSRRKF 350
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 100.138 bits (248), Expect = 2.231e-23
Identity = 69/222 (31.08%), Postives = 111/222 (50.00%), Query Frame = 3 
Query:  312 DPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKF 971
            +PKVLITT+  P     +F  +L  VIP++    R    ++ +  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M          K + K PT++ P ++    T+ LG  +  +   LFP  P+    ++  F+ Q D I F+      +N K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK +   S +RKF
Sbjct:  147 NPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEM----------KRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG----IQELGPRFTLKLRSLQKGTF-DSKFGEYEWVHKRHEMDSSRRKF 353
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 95.5153 bits (236), Expect = 1.121e-21
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 3 
Query:  312 DPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHK 938
            +PKVLITT+  P     +F  +L  VIP++    R    ++ +  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M          K + K PT++ P ++    T+ LG  +  +   LFP  P+    ++  F+ Q D I F+      +N K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK
Sbjct:  144 NPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEM----------KRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG----IQELGPRFTLKLRSLQKGTF-DSKFGEYEWVHK 339
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:415250])

HSP 1 Score: 61.6178 bits (148), Expect = 1.309e-10
Identity = 31/94 (32.98%), Postives = 50/94 (53.19%), Query Frame = 3 
Query:  312 DPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDL 593
            +PKVLITT+  P     +F  +L  VIP++    R    ++ +  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M +
Sbjct:  135 NPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKV 228
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Match: ENSXETT00000024824.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV466346.1:290:2136:-1 gene:ENSXETG00000014885.1 transcript:ENSXETT00000024824.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 115.931 bits (289), Expect = 1.543e-30
Identity = 57/147 (38.78%), Postives = 88/147 (59.86%), Query Frame = 3 
Query:  372 KELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKE 809
            +E+  + PN+QRMNRG   V  +   C    +TDL+I+ E RG+P  L + H P GPT  F+L +VV+RH + DL T +++           +P L+F   +S LG+R+ +I+ YLFPVPK +S R++ F  Q+D+I F+    T +
Sbjct:   15 QEMRLIFPNAQRMNRGKHEVGALVQACRANDVTDLLIVHEHRGMPDGLIVCHLPFGPTAYFTLCNVVMRHDIPDLGTMSEA-----------HPHLIFHNFSSRLGQRVADIMKYLFPVPKEESKRVITFANQDDYISFRGWVHTMQ 150
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Match: ENSXETT00000024813.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV466346.1:290:2124:-1 gene:ENSXETG00000014885.1 transcript:ENSXETT00000024813.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 115.161 bits (287), Expect = 3.384e-30
Identity = 57/146 (39.04%), Postives = 87/146 (59.59%), Query Frame = 3 
Query:  375 ELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKE 809
            E+  + PN+QRMNRG   V  +   C    +TDL+I+ E RG+P  L + H P GPT  F+L +VV+RH + DL T +++           +P L+F   +S LG+R+ +I+ YLFPVPK +S R++ F  Q+D+I F+    T +
Sbjct:   18 EMRLIFPNAQRMNRGKHEVGALVQACRANDVTDLLIVHEHRGMPDGLIVCHLPFGPTAYFTLCNVVMRHDIPDLGTMSEA-----------HPHLIFHNFSSRLGQRVADIMKYLFPVPKEESKRVITFANQDDYISFRGWVHTMQ 152
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Match: ENSXETT00000037443.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV466346.1:290:2403:-1 gene:ENSXETG00000014885.1 transcript:ENSXETT00000037443.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 115.161 bits (287), Expect = 6.552e-29
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 3 
Query:  372 KELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFK 788
            +E+  + PN+QRMNRG   V  +   C    +TDL+I+ E RG+P  L + H P GPT  F+L +VV+RH + DL T +++           +P L+F   +S LG+R+ +I+ YLFPVPK +S R++ F  Q+D+I F+
Sbjct:   20 QEMRLIFPNAQRMNRGKHEVGALVQACRANDVTDLLIVHEHRGMPDGLIVCHLPFGPTAYFTLCNVVMRHDIPDLGTMSEA-----------HPHLIFHNFSSRLGQRVADIMKYLFPVPKEESKRVITFANQDDYISFR 148
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Match: ffar4 (free fatty acid receptor 4 [Source:Xenbase;Acc:XB-GENE-954927])

HSP 1 Score: 111.694 bits (278), Expect = 1.586e-27
Identity = 76/222 (34.23%), Postives = 117/222 (52.70%), Query Frame = 3 
Query:  315 PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPY-MNTSRKRKF 971
            PK+LITT+  P     +F+++L  VIPNS    R    ++ +  +C+    TDLII+ E R VP  L   H P GPT  F + +V LR +M          K K K PT++ P ++    T+ LG  +  +   L+P  P+    ++  F+ Q D+I F+      ++ K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK + M+TSR RKF
Sbjct:  116 PKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIIINEDRKVPNGLVFCHLPDGPTAHFKMSNVRLRKEM----------KRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPQFTGRQVATFHNQRDYIFFRYHRYIFKSEKKVG----IQELGPRFTLKLRSLQKGTF-DSKYGEYEWVHKRHEMDTSR-RKF 321
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Match: ffar4 (free fatty acid receptor 4 [Source:Xenbase;Acc:XB-GENE-954927])

HSP 1 Score: 111.694 bits (278), Expect = 1.791e-27
Identity = 76/222 (34.23%), Postives = 117/222 (52.70%), Query Frame = 3 
Query:  315 PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPY-MNTSRKRKF 971
            PK+LITT+  P     +F+++L  VIPNS    R    ++ +  +C+    TDLII+ E R VP  L   H P GPT  F + +V LR +M          K K K PT++ P ++    T+ LG  +  +   L+P  P+    ++  F+ Q D+I F+      ++ K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK + M+TSR RKF
Sbjct:  123 PKILITTSDRPRGRTVRFTEQLSSVIPNSDVYYRRGLALKKVIPQCISRDYTDLIIINEDRKVPNGLVFCHLPDGPTAHFKMSNVRLRKEM----------KRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPQFTGRQVATFHNQRDYIFFRYHRYIFKSEKKVG----IQELGPRFTLKLRSLQKGTF-DSKYGEYEWVHKRHEMDTSR-RKF 328
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Mouse
Match: Imp4 (IMP4, U3 small nucleolar ribonucleoprotein [Source:MGI Symbol;Acc:MGI:106572])

HSP 1 Score: 221.09 bits (562), Expect = 8.956e-70
Identity = 121/292 (41.44%), Postives = 186/292 (63.70%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +  + + K+ + +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Mouse
Match: Imp4 (IMP4, U3 small nucleolar ribonucleoprotein [Source:MGI Symbol;Acc:MGI:106572])

HSP 1 Score: 108.227 bits (269), Expect = 6.312e-28
Identity = 58/134 (43.28%), Postives = 90/134 (67.16%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVP 506
            + RK +E+ +  + + K+ + +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P
Sbjct:   12 LYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTP 145
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Mouse
Match: Rpf1 (ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535])

HSP 1 Score: 107.842 bits (268), Expect = 3.790e-26
Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 3 
Query:  315 PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPY-MNTSRKRKF 971
            PK+LITT+  P     +  ++L  VIP+S    R    ++ I  +C+    TDLI++ E R  P  L +SH P+GPT  F +  V LR +          +K + K PT++ P ++    T+ LG  +  +   LFP  P+    ++  F+ Q D+I F+      ++ K+ G    I++ GP+FTL+L  L +G   + K  E E+ HKP  M+TSR RKF
Sbjct:  142 PKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE----------IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG----IQELGPRFTLKLRSLQKGTF-DSKYGEYEWVHKPREMDTSR-RKF 347
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Mouse
Match: Rpf1 (ribosome production factor 1 homolog [Source:MGI Symbol;Acc:MGI:1917535])

HSP 1 Score: 60.077 bits (144), Expect = 1.163e-10
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 3 
Query:  513 LTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFP-VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHK 938
            L +SH P+GPT  F +  V LR +          +K + K PT++ P ++    T+ LG  +  +   LFP  P+    ++  F+ Q D+I F+      ++ K+ G    I++ GP+FTL+L  L +G   + K  E E+ HK
Sbjct:    3 LILSHLPNGPTAHFKMSSVRLRKE----------IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG----IQELGPRFTLKLRSLQKGTF-DSKYGEYEWVHK 131
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Match: sp|Q5R947|IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii OX=9601 GN=IMP4 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.691e-69
Identity = 122/292 (41.78%), Postives = 185/292 (63.36%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +    + K+ L +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Match: sp|Q96G21|IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens OX=9606 GN=IMP4 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.157e-69
Identity = 122/292 (41.78%), Postives = 185/292 (63.36%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +    + K+ L +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Match: sp|Q5PQR5|IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus OX=10116 GN=Imp4 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.265e-69
Identity = 121/292 (41.44%), Postives = 186/292 (63.70%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +  + + K+ + +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Match: sp|Q8VHZ7|IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus OX=10090 GN=Imp4 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.265e-69
Identity = 121/292 (41.44%), Postives = 186/292 (63.70%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ +  + + K+ + +++E N +  + L++ AL +  ++ +DDAG +G+ S  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T +++            P L+  G +S LGKR+ +IL YLFPVPK DS+R++ F  Q+D+I F++    K +     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+RKR FLS
Sbjct:   13 LYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAK-----------PHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Match: sp|Q0VD01|IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus OX=9913 GN=IMP4 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.032e-68
Identity = 121/292 (41.44%), Postives = 183/292 (62.67%), Query Frame = 3 
Query:  111 INRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            + RK +E+ E    + K  + +++E N +  + L++ AL +  ++ +DDAG +G+ +  DDEY+WAGVEDPKV+ITT+RDPSS L+ F+KEL  V P +QRMNRG   V  +   C    +TDL+++ E RG P  L +SH P GPT  F+L +VV+RH + DL T++++            P L+  G +S LGKR+ +IL YLFPVPK DS R++ F  Q+D+I F++    K N     + + + + GP+F L+L+ +  G L+ E T++VE+   PY NT+ KR FLS
Sbjct:   13 LYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAK-----------PHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKTNH----RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Match: A0A4S2LZ13 (Brix domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_004983 PE=4 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 2.555e-80
Identity = 136/304 (44.74%), Postives = 203/304 (66.78%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSI--ESNDV-SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             + Q R R + I R+  E R+ E  Q K+NLL++   E   +   L+ +AL +N+ + W D GADG+ + EDDEY WAG EDP+V++TT+R PSS L++F+KEL  +IPN+ ++NRGN   + +   CL +QITDL+++ E RGVP  LTISH P GPT VF+L +V  RH+M+      SG     K+P  YP  +F G  S LG R+++IL +LFPVPK DS R++ +YE++D I+F++ T      K   K+L +++HGP F ++L+K++RG L  E  ++VE+ ++PYM+T+ KR+FLSE
Sbjct:    2 LKRQARLRREFIYRRSIEARDVE-SQRKKNLLRAALREGKRLPKELENNALDLNEELDWSDEGADGVAAAEDDEYLWAGTEDPRVVVTTSRSPSSRLKEFAKELRFLIPNATKINRGNYQNKDLLEACLAKQITDLVVVNETRGVPDTLTISHLPFGPTAVFTLYNVHARHEME-AIGRGSGA----KMPQAYPHHIFHGLNSKLGMRVRSILKHLFPVPKDDSRRVITWYEEDDVILFRHHTY-----KYVDKELQVQEHGPSFDMRLYKIWRGPLHEEAAADVEWVYRPYMSTTFKRRFLSE 294
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Match: A0A1S8X4E5 (Brix domain protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_02509 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 5.344e-80
Identity = 135/304 (44.41%), Postives = 203/304 (66.78%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSI--ESNDV-SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             + Q R R + I R+  E R+ E  Q K++LL++   E   +   L+ +AL +N+ + W D G DG+ + EDDEY WAG EDP+V++TT+R PSS L++F+KEL  +IPN+ ++NRGN   + +   CL +QITDL+++ E RGVP  LTISH P GPT VF+L +V  RH+M+      SGV    K+P  YP  +F G  S LG R+++IL +LFPVPK DS R++ +YE++D I+F++ T      K   K+L +++HGP F ++L+K++RG L  E  ++VE+ ++PYM+T+ KR+FLSE
Sbjct:    1 LKRQARLRREFIYRRSIEARDVE-SQRKKDLLRTALKEGKRLPKELENNALDLNEELDWSDEGGDGVAAAEDDEYLWAGTEDPRVVVTTSRSPSSRLKEFAKELRFLIPNATKINRGNYQNKDLLEACLAKQITDLVVVNETRGVPDTLTISHLPFGPTAVFTLYNVHARHEME-AIGRGSGV----KMPQAYPHHIFHGLNSKLGMRVRSILKHLFPVPKDDSRRVITWYEEDDVILFRHHTY-----KYVDKELQVQEHGPSFDMRLYKIWRGPLHEEAAADVEWVYRPYMSTTFKRRFLSE 293
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Match: A0A504Y8K8 (U3 small nucleolar ribonucleoprotein IMP4 OS=Fasciola gigantica OX=46835 GN=FGIG_08606 PE=4 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.984e-79
Identity = 131/303 (43.23%), Postives = 200/303 (66.01%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESND--VSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             + Q R R + I R+  E R++E  + KQ L  S++        LK+ AL +N+ + W D G +G+ + EDDEY WAG EDP+V+ITT+R PSS L++F+KEL  +IPN+ ++NRGN   + + + CL +QITDL+I+ E RGVP  LT+SH P GPT VF+L +V  RH+++ E    +G     K+P  YP  +  G  + LG+R+++IL+ LFPVPK D+ R++ ++E +D I F++ T      K   K+L I++HGP F ++L+K++RG +  E  ++VE+ +KPYM+T+ KRKFLSE
Sbjct:    2 LKRQARIRREFIYRRSIEARDSESERKKQLLRVSLKEGKRLPKELKEDALALNEELDWSDEGGEGVANAEDDEYYWAGTEDPRVVITTSRSPSSRLKEFTKELRFLIPNATKINRGNYQNKDLIDACLSKQITDLVIVNETRGVPDTLTVSHLPFGPTAVFTLYNVKARHELE-EVGRGTGA----KMPQAYPHHIVHGLNTKLGQRVRSILVNLFPVPKDDTRRVITWFEDDDVICFRHHTF-----KYVEKELQIKEHGPSFDMRLYKIWRGPMHEEAAADVEWVYKPYMSTTYKRKFLSE 294
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Match: A0A4E0R393 (U3 small nucleolar ribonucleoprotein IMP4 OS=Fasciola hepatica OX=6192 GN=D915_006198 PE=4 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.984e-79
Identity = 131/303 (43.23%), Postives = 200/303 (66.01%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESND--VSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             + Q R R + I R+  E R++E  + KQ L  S++        LK+ AL +N+ + W D G +G+ + EDDEY WAG EDP+V+ITT+R PSS L++F+KEL  +IPN+ ++NRGN   + + + CL +QITDL+I+ E RGVP  LT+SH P GPT VF+L +V  RH+++ E    +G     K+P  YP  +  G  + LG+R+++IL+ LFPVPK D+ R++ ++E +D I F++ T      K   K+L I++HGP F ++L+K++RG +  E  ++VE+ +KPYM+T+ KRKFLSE
Sbjct:    2 LKRQARIRREFIYRRSIEARDSESERKKQLLRVSLKEGKRLPKELKEDALALNEELDWSDEGGEGVANAEDDEYYWAGTEDPRVVITTSRSPSSRLKEFTKELRFLIPNATKINRGNYQNKDLIDACLSKQITDLVIVNETRGVPDTLTVSHLPFGPTAVFTLYNVKARHELE-EVGRGTGA----KMPQAYPHHIVHGLNTKLGQRVRSILVNLFPVPKDDTRRVITWFEDDDVICFRHHTF-----KYVEKELQIKEHGPSFDMRLYKIWRGPMHEEAAADVEWVYKPYMSTTYKRKFLSE 294
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Match: A0A430QJV9 (U3 small nucleolar ribonucleoprotein IMP4 OS=Schistosoma bovis OX=6184 GN=DC041_0005045 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.436e-79
Identity = 135/303 (44.55%), Postives = 199/303 (65.68%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             + Q R R + I R+  E R+AE  + K+ L  ++    V    +++ AL +N+ + W D G +G+ + +DDEY WAG EDP+V+ITT+R PSS L++F+KEL  +IPN+ ++NRGN   + +   CL +QITD++I+ E RGVP  L ISH P GPT +F+L +V  RH  D+ET    G     K+P  YP  +FKG  S LG+R++ IL +LFPVPK DS R+V +YE++D I F++ T      K   KKL + +HGP F L+L+K++RG L  E T+++E+ ++PYMNT+ KR+FLSE
Sbjct:   19 LKRQARLRREFIYRRSIEVRDAENEKKKKMLKVALAEGKVLPKEIQEGALQLNEELDWSDDGGEGVANYQDDEYLWAGTEDPRVVITTSRSPSSKLKEFAKELRFLIPNAAKINRGNYLNKNLLEACLAKQITDIVIVNESRGVPDTLIISHLPFGPTAIFTLYNVRTRH--DMET---MGCGTGAKMPQTYPNHIFKGLNSKLGQRVRCILKHLFPVPKDDSKRVVTWYEEDDVICFRHHT-----YKYMDKKLELTEHGPSFDLRLYKIWRGPLHEEATADIEWVYRPYMNTTFKRRFLSE 311
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Cavefish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 220.705 bits (561), Expect = 1.039e-69
Identity = 120/298 (40.27%), Postives = 186/298 (62.42%), Query Frame = 3 
Query:   93 RFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
            R R + + RK QE+R   + + KQ L  +++ N +  + ++K AL +   + +DD G +G+ S  DDEY+WAGVEDPKV++TT+RDPSS L+ F+KE+  + P +QRMNRGN  V  + + C    +TDL+I++E RG P  L + H P GPT  F+L +VV+RH + D+ T +++           +P L+F   +S LG+R+ NIL YLFPVPK +S R++ F  ++D I F+     K   K   + + + + GP+F ++LF +  G L+NE T++VE+ H  +  T+RKRK LS
Sbjct:    5 RLRKEYLYRKAQEERLHSIEEKKQKLKSALDENRLIPTEVRKEALQLQKLLEFDDEGGEGVSSHMDDEYKWAGVEDPKVMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHEVNTLVHACKANGVTDLVIIQETRGQPDGLIVCHLPFGPTAYFTLFNVVMRHDIPDIGTMSEA-----------FPHLIFHNFSSRLGRRVSNILKYLFPVPKEESRRVITFANKDDFISFRWHHTYK---KTDHRNVELTEVGPRFEMKLFMIKLGTLENESTADVEWRHHAFTRTARKRKCLS 288
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Cavefish
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:ZFIN;Acc:ZDB-GENE-040718-474])

HSP 1 Score: 192.971 bits (489), Expect = 2.982e-59
Identity = 107/274 (39.05%), Postives = 168/274 (61.31%), Query Frame = 3 
Query:   81 RHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTL--QLFKLF 887
            R + R R + + RK QE+R   + + KQ L  +++ N +  + ++K AL +   + +DD G +G+ S  DDEY+WAGVEDPKV++TT+RDPSS L+ F+KE+  + P +QRMNRGN  V  + + C    +TDL+I++E RG P  L + H P GPT  F+L +VV+RH + D+ T +++           +P L+F   +S LG+R+ NIL YLFPVPK +S R++ F  ++D I F++ T  K + +       + + GP+F +  + F LF
Sbjct:    3 RREIRLRKEYLYRKAQEERLHSIEEKKQKLKSALDENRLIPTEVRKEALQLQKLLEFDDEGGEGVSSHMDDEYKWAGVEDPKVMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHEVNTLVHACKANGVTDLVIIQETRGQPDGLIVCHLPFGPTAYFTLFNVVMRHDIPDIGTMSEA-----------FPHLIFHNFSSRLGRRVSNILKYLFPVPKEESRRVITFANKDDFISFRHHTYKKTDHRNVE----LTEVGPRFEMKCKFFSLF 261
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Cavefish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:103031954])

HSP 1 Score: 103.219 bits (256), Expect = 1.509e-24
Identity = 86/304 (28.29%), Postives = 141/304 (46.38%), Query Frame = 3 
Query:   99 RHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVED-----------PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQ-YPRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKF 971
            RH +  +  QEKR+ +L   K+   +     D +  K+   TI +   +D+      +  ED+E  +    D           PKVLITT+  P     +F ++L  V+PN+    R    ++ I  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M          K + K PT+ +P ++    T+ LG  +  +   LFP  P+    +   F+ Q D I F+      +N K+ G    I++ GP+FT++L  L +G   + K  E E+ HK +   S +RKF
Sbjct:   71 RHLMFMKLKQEKRKLKLDLRKKRRKEREALGDKAPPKEVPKTIENQRVYDET----TVDPEDEEVAYDEGTDEFSAYFNKLTNPKVLITTSDRPRGRTVRFCEQLASVVPNAHVYYRRGLALKRIIPQCVSRDFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEM----------KRRGKEPTEHHPEVILNNFTTRLGHSIGRMFAALFPQDPQFTGRQAATFHNQRDFIFFRFHRYIFKNEKKVG----IQELGPRFTMKLRSLQKGTF-DSKYGEYEWVHKRHEMDSSRRKF 355
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Cavefish
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:103031954])

HSP 1 Score: 78.9518 bits (193), Expect = 3.697e-16
Identity = 68/249 (27.31%), Postives = 114/249 (45.78%), Query Frame = 3 
Query:   81 RHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVED-----------PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQ-YPRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFK 788
            +++QR RH +  +  QEKR+ +L   K+   +     D +  K+   TI +   +D+      +  ED+E  +    D           PKVLITT+  P     +F ++L  V+PN+    R    ++ I  +C+    T L+++ E R VP  + + H P GPT  F +  V LR +M          K + K PT+ +P ++    T+ LG  +  +   LFP  P+    +   F+ Q D I F+
Sbjct:   66 KNKQR-RHLMFMKLKQEKRKLKLDLRKKRRKEREALGDKAPPKEVPKTIENQRVYDET----TVDPEDEEVAYDEGTDEFSAYFNKLTNPKVLITTSDRPRGRTVRFCEQLASVVPNAHVYYRRGLALKRIIPQCVSRDFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEM----------KRRGKEPTEHHPEVILNNFTTRLGHSIGRMFAALFPQDPQFTGRQAATFHNQRDFIFFR 299
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Yeast
Match: IMP4 (Component of the SSU processome; SSU processome is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs [Source:SGD;Acc:S000005019])

HSP 1 Score: 175.637 bits (444), Expect = 3.516e-53
Identity = 107/308 (34.74%), Postives = 175/308 (56.82%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSI--------ESNDVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFL 974
             R Q R R + + RK QE ++++L Q +Q + Q++        E  +  +L+K         +  ++     L ++D+    +G+ DP++++TT+RDPS+ L QF+KE+  + PN+ R+NRGN  +  + + C K   TDL++L E RGVP  LTISHFPHGPT  FSL +VV+RH + +   N+S V          P L+F   T+ LGKR+  IL +LF   PK DS R++ F  + D I  +     +     T + + I + GP+F ++LF+L  G L+N K ++VE+  + ++ T+ K+ +L
Sbjct:    2 LRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKD---FRYDQSLKESEEADDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI-INAGNQSEVN---------PHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVR-----TREGVEIAEVGPRFEMRLFELRLGTLEN-KDADVEWQLRRFIRTANKKDYL 290
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Yeast
Match: RPF1 (Protein involved in assembly and export of the large ribosomal subunit; nucleolar protein; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA [Source:SGD;Acc:S000001130])

HSP 1 Score: 86.6557 bits (213), Expect = 7.194e-20
Identity = 77/303 (25.41%), Postives = 136/303 (44.88%), Query Frame = 3 
Query:   81 RHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGV---EDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRG-NTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFL 974
            RH  R +     R++ E RE  L   K+N+ Q+IE+  V        TIN            +   EDD  ++      E PK+ +TT  +   +  +F+  L  ++PN   + R     ++ I++ C+K   TD++I+ E +     LT  H P GPT  F L   V              + G  +  +  P L+     + LG+ +  +   + P  P  +  +++  + Q D+I F+      ++++  G    +++ GPQFTL+L +L RG+       E E+ HKP M+  +K+ +L
Sbjct:   30 RHTMRRKRAKEERENPELREQRL---KENVTQTIENTRVYDE-----TINKE----------VEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV----------EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG----LQELGPQFTLKLKRLQRGI-----KEETEWEHKPEMDKEKKKFYL 295
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Nematostella
Match: EDO45425 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RT92])

HSP 1 Score: 204.912 bits (520), Expect = 5.505e-64
Identity = 119/303 (39.27%), Postives = 181/303 (59.74%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
             R Q R R + + RK  E++E  + + K+ L  S+       + L+K    + +A+ +DD   + + S  DDEY WAGVEDPK++ITT+ +PSS L+QF+KE+  V PNSQR+NRGN  ++ + + C    +TDLII+ E RG P  L + H P GPT  F+L   V+RH +      K G      +   YP L+F    S LG R++NIL YLFPVPK D+ R+V F  Q D+I F++ T  K +      ++ + + GP+F ++++++  G + ++  +E E+  KPYMNTS+KRK LS+
Sbjct:    2 LRRQARLRREYLYRKSLEEQERTIYEKKKKLKLSLSEGKAIPTELRKDEAELREAIEFDDEKHEKVGSHIDDEYAWAGVEDPKIMITTSHNPSSRLKQFAKEMRLVFPNSQRLNRGNYVMKQLVDACKANDVTDLIIVHEHRGEPDGLVVCHLPFGPTAYFTLSSTVMRHDIP-----KIGT-----MSEAYPHLIFHNFKSKLGDRVRNILKYLFPVPKEDTRRVVTFANQSDYISFRHHTYKKVDG-----QIELSEVGPRFEMKVYEIKLGTV-DQIEAETEWRLKPYMNTSKKRKALSQ 288
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Nematostella
Match: EDO43977 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RX66])

HSP 1 Score: 100.523 bits (249), Expect = 1.626e-24
Identity = 70/222 (31.53%), Postives = 110/222 (49.55%), Query Frame = 3 
Query:  315 PKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHK-PYMNTSRKRKFL 974
            PKVLIT++  P     QF +EL  VIPNS+   R    ++ I  +   +  T +II+ E    P  + ++H P GPT  F L  V L  +          ++G  K+ +  P L+     + LG  +  +L  LFP  P+    + V F+ Q D + F+      +N+K  G    +++ GP+FTL+L  + RG   + K  E E+ HK   M+TSR++ FL
Sbjct:   77 PKVLITSSDRPKHPTVQFMEELCRVIPNSEVRQRKGRDLKKIIPQAQAKGYTAMIIINEDHKKPNSIVVTHIPDGPTAHFKLSSVRLPKE----------IRGHGKMTSHKPELILNNFNTRLGHSVARVLAALFPYDPQFKGRQCVTFHNQRDFVFFRRHRYIFKNAKRVG----LQELGPRFTLKLRSIQRGTF-DSKFGEYEWIHKRKEMDTSRRKFFL 283
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Medaka
Match: imp4 (IMP U3 small nucleolar ribonucleoprotein 4 [Source:NCBI gene;Acc:101167876])

HSP 1 Score: 228.409 bits (581), Expect = 1.083e-72
Identity = 123/303 (40.59%), Postives = 190/303 (62.71%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDV--SALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQM-DLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLS 977
             R Q R R + + RK QE R   + + KQNL  +++ N +  + ++K AL +   + +DD GA+G+ S  DDEY+WAGVEDPK+++TT+RDPSS L+ F+KE+  + P +QRMNRGN  +  +   C    +TDL+I+ E RG P  L + H P GPT  F+L +VV+RH + D+ T +++           YP L+F   TS LG+R+ +IL YLFPVPK DS R++ F  Q+D I F++ T  K +     + + + + GP+F ++L+ +  G L+NE T+EVE+    + +T++KR+FLS
Sbjct:    2 LRRQVRLRREYLYRKAQEDRLRTIEEKKQNLKSALDENRLLPTEVRKEALQLQKLLEYDDEGAEGVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEVKLMFPGAQRMNRGNHELPTLVRACKANNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTLYNVVMRHDVPDIGTMSEA-----------YPHLIFHNFTSRLGRRVSSILKYLFPVPKDDSRRVITFANQDDFISFRHHTYKKTDH----RNVELTEVGPRFEMKLYMIKLGTLENENTAEVEWRQHGFTHTAKKRRFLS 289
[Close]
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Medaka
Match: rpf1 (ribosome production factor 1 homolog [Source:NCBI gene;Acc:101159425])

HSP 1 Score: 95.1301 bits (235), Expect = 1.193e-21
Identity = 67/222 (30.18%), Postives = 110/222 (49.55%), Query Frame = 3 
Query:  312 DPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQY-PRLLFKGCTSPLGKRLQNILLYLFPV-PKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKF 971
            +P+VLITT+  P     +F ++L  VIPN+    R    ++ I  +C+    T L+++ E R VP  L + H P GPT  F +  V LR +          +K + K PT++ P ++    ++ LG  +  +   LFP  P     ++  F+ Q D I F+      +N K+ G    I++ GP+FTL+L  L +G   + K  E E+  K +   + +RKF
Sbjct:  149 NPQVLITTSDRPRGKTVRFCEQLASVIPNAHVYYRRGLALKKIIPQCVARNFTYLMVVNEDRLVPNGLVLCHLPDGPTAHFKVSSVRLRKE----------IKRRGKDPTEHSPEVILNNFSTRLGHTIARLFAALFPQDPNFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG----IQELGPRFTLKLRSLQKGTF-DSKYGEYEWVLKRHEMDACRRKF 355
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Planmine SMEST
Match: SMESG000020293.1 (SMESG000020293.1)

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 3 
Query:   78 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINXXXXXXXXXXXXILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 980
            FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINDAMAWDDAGADGILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE
Sbjct:    2 FRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALTINDAMAWDDAGADGILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFLSE 302
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Planmine SMEST
Match: SMESG000035174.1 (SMESG000035174.1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.858e-17
Identity = 73/240 (30.42%), Postives = 109/240 (45.42%), Query Frame = 3 
Query:  276 IEDDEYQWA--GVEDPKVLITTARDPSSNLRQFSKELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTISHFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCTSPLGKRLQNILLYLFP----VPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKETGK--KLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKF 971
            +E DE  +      +PKVLIT++   S  L  F  E   VIP ++  NR N  V+ I  +      T +II+ E   +   + I   P GPT  F L    LR     E  N     G   +  Q   L FK   + +G RL  I L LFP    +     NR + F    D I F++    +   KE+G+  K  + + GP+F+L+L  L +G+ +N  + + EY +    N S +R+F
Sbjct:   69 LEKDELSFIINNNTEPKVLITSSIKGSPRLHGFCIEFASVIPQAEYCNRKNFQVKNIVKQAKDNSFTAVIIIGENDKIIDSMKIYCLPDGPTSNFRLSHAYLRS----EHKNTKHFSGLENINPQVCLLNFK---TMMGLRLSRIFLSLFPSKNALDAHSHNRNITFKNGRDFIFFRH---HRFQIKESGQKDKASMNEVGPRFSLRLESLHKGLFEN--SPDFEYIYDRRENNSNRRQF 296
The following BLAST results are available for this feature:
BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
IMP48.655e-7041.78IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
IMP41.650e-6645.49IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
IMP41.984e-6644.40IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
IMP46.808e-5642.26IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
IMP41.926e-4241.40IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ZK795.35.794e-6336.75Brix domain-containing protein ZK795.3 [Source:Un... [more]
F44G4.17.451e-2230.63Brix domain-containing protein F44G4.1 [Source:Un... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG119204.254e-5839.22gene:FBgn0039274 transcript:FBtr0084769[more]
CG67124.886e-2231.51gene:FBgn0032408 transcript:FBtr0080364[more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
imp49.378e-7640.92IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
rpf11.832e-2331.08ribosome production factor 1 homolog [Source:NCBI ... [more]
rpf12.231e-2331.08ribosome production factor 1 homolog [Source:NCBI ... [more]
rpf11.121e-2130.81ribosome production factor 1 homolog [Source:NCBI ... [more]
rpf11.309e-1032.98ribosome production factor 1 homolog [Source:NCBI ... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSXETT00000024824.11.543e-3038.78pep primary_assembly:Xenopus_tropicalis_v9.1:KV466... [more]
ENSXETT00000024813.13.384e-3039.04pep primary_assembly:Xenopus_tropicalis_v9.1:KV466... [more]
ENSXETT00000037443.16.552e-2940.00pep primary_assembly:Xenopus_tropicalis_v9.1:KV466... [more]
ffar41.586e-2734.23free fatty acid receptor 4 [Source:Xenbase;Acc:XB-... [more]
ffar41.791e-2734.23free fatty acid receptor 4 [Source:Xenbase;Acc:XB-... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4
Match NameE-valueIdentityDescription
Imp48.956e-7041.44IMP4, U3 small nucleolar ribonucleoprotein [Source... [more]
Imp46.312e-2843.28IMP4, U3 small nucleolar ribonucleoprotein [Source... [more]
Rpf13.790e-2633.33ribosome production factor 1 homolog [Source:MGI S... [more]
Rpf11.163e-1030.56ribosome production factor 1 homolog [Source:MGI S... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5R947|IMP4_PONAB3.691e-6941.78U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
sp|Q96G21|IMP4_HUMAN4.157e-6941.78U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
sp|Q5PQR5|IMP4_RAT6.265e-6941.44U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
sp|Q8VHZ7|IMP4_MOUSE6.265e-6941.44U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
sp|Q0VD01|IMP4_BOVIN2.032e-6841.44U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4S2LZ132.555e-8044.74Brix domain-containing protein OS=Opisthorchis fel... [more]
A0A1S8X4E55.344e-8044.41Brix domain protein (Fragment) OS=Opisthorchis viv... [more]
A0A504Y8K84.984e-7943.23U3 small nucleolar ribonucleoprotein IMP4 OS=Fasci... [more]
A0A4E0R3934.984e-7943.23U3 small nucleolar ribonucleoprotein IMP4 OS=Fasci... [more]
A0A430QJV95.436e-7944.55U3 small nucleolar ribonucleoprotein IMP4 OS=Schis... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
imp41.039e-6940.27IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
imp42.982e-5939.05IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
rpf11.509e-2428.29ribosome production factor 1 homolog [Source:NCBI ... [more]
rpf13.697e-1627.31ribosome production factor 1 homolog [Source:NCBI ... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
IMP43.516e-5334.74Component of the SSU processome; SSU processome is... [more]
RPF17.194e-2025.41Protein involved in assembly and export of the lar... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO454255.505e-6439.27Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO439771.626e-2431.53Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
imp41.083e-7240.59IMP U3 small nucleolar ribonucleoprotein 4 [Source... [more]
rpf11.193e-2130.18ribosome production factor 1 homolog [Source:NCBI ... [more]
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BLAST of U3 small nucleolar ribonucleoprotein protein IMP4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000020293.10.000e+0100.00SMESG000020293.1[more]
SMESG000035174.14.858e-1730.42SMESG000035174.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022640 ID=SMED30022640|Name=U3 small nucleolar ribonucleoprotein protein IMP4|organism=Schmidtea mediterranea sexual|type=transcript|length=1069bp
GTCTAATATTTGTTTAAATATTATTTCTAAATTATATGATATTATTTTTA
TAAAATTATTGAAATAACATTATTATGTTTCGACATCAACAACGTTTTAG
ACATCAGCTTATTAATCGGAAACATCAGGAAAAAAGAGAAGCTGAATTAA
TTCAAAATAAACAAAATTTATTACAATCAATTGAATCTAATGATGTTAGT
GCCCTTAAAAAGTCAGCTCTTACTATTAATGACGCTATGGCTTGGGATGA
CGCAGGTGCCGATGGAATACTATCAATTGAAGATGACGAATACCAATGGG
CTGGTGTTGAAGATCCAAAAGTTCTTATTACCACAGCCAGAGATCCTAGC
TCGAACCTTAGACAATTTTCAAAGGAACTTCATCATGTCATTCCTAATTC
CCAAAGAATGAACAGAGGAAATACCACCGTTGAAATTATAACTAACAAAT
GCCTAAAAGAACAAATAACGGATTTAATAATTTTAGAAGAAGTTCGTGGA
GTGCCGAAAAAATTAACAATTAGCCATTTTCCACATGGTCCGACCGTAGT
GTTTTCACTTGTTGATGTTGTTTTAAGACATCAAATGGATCTTGAAACAT
CCAATAAAAGTGGAGTTAAAGGTAAAAGAAAATTGCCCACTCAGTATCCT
CGTTTATTATTCAAAGGATGCACATCACCATTAGGAAAAAGATTGCAAAA
TATTCTTTTGTATCTGTTTCCAGTACCAAAACCTGATTCAAACCGTATCG
TTTGTTTTTATGAACAGGAAGATCACATTGTCTTCAAAAACTGCACATGT
ACTAAGGAAAATTCAAAGGAAACCGGGAAAAAGTTAATCATTGAGGATCA
TGGGCCACAATTTACTTTGCAATTGTTCAAATTATTCCGAGGAGTTTTGC
AGAATGAAAAGACTTCTGAAGTTGAATATGCCCACAAGCCCTACATGAAC
ACCTCGAGAAAACGCAAATTTTTGTCTGAATAATGAATATTGTCTTTTTC
TTATTGATTTTTTATTTTTATTCAAGTGCTTGCTGGGCAATTTTTGTTTG
TTAATTGTCGATACAACAT
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protein sequence of SMED30022640-orf-1

>SMED30022640-orf-1 ID=SMED30022640-orf-1|Name=SMED30022640-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=303bp
MFRHQQRFRHQLINRKHQEKREAELIQNKQNLLQSIESNDVSALKKSALT
INDAMAWDDAGADGILSIEDDEYQWAGVEDPKVLITTARDPSSNLRQFSK
ELHHVIPNSQRMNRGNTTVEIITNKCLKEQITDLIILEEVRGVPKKLTIS
HFPHGPTVVFSLVDVVLRHQMDLETSNKSGVKGKRKLPTQYPRLLFKGCT
SPLGKRLQNILLYLFPVPKPDSNRIVCFYEQEDHIVFKNCTCTKENSKET
GKKLIIEDHGPQFTLQLFKLFRGVLQNEKTSEVEYAHKPYMNTSRKRKFL
SE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0001650fibrillar center
GO:0005634nucleus
GO:0005730nucleolus
GO:0030684preribosome
GO:0034457Mpp10 complex
GO:0019013viral nucleocapsid
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: biological process
TermDefinition
GO:0006364rRNA processing
GO:0042254ribosome biogenesis
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
IPR004154Anticodon-bd
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableGENE3DG3DSA:3.40.50.10480coord: 81..257
e-value: 1.5E-23
score: 85.3
NoneNo IPR availablePANTHERPTHR22734U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4coord: 1..299
NoneNo IPR availablePANTHERPTHR22734:SF2U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4coord: 1..299
NoneNo IPR availableSUPERFAMILYSSF52954Class II aaRS ABD-relatedcoord: 80..273
IPR007109Brix domainSMARTSM00879Brix_2coord: 84..270
e-value: 2.0E-32
score: 123.7
IPR007109Brix domainPFAMPF04427Brixcoord: 89..269
e-value: 3.1E-19
score: 69.9
IPR007109Brix domainPROSITEPS50833BRIXcoord: 81..276
score: 34.816