SMED30022579
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022579 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Alignments
SMED30022579 aligns in the following genomic locations:
Homology
BLAST of SMED30022579 vs. TrEMBL
Match: A0A0R3TL61 (Uncharacterized protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS7954 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.228e-15 Identity = 88/362 (24.31%), Postives = 161/362 (44.48%), Query Frame = 1 Query: 247 RKKIQIPRIKLIE---PEITKDHKIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLKIIDFNFSPNIDK----------DFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISIFXXXXXXXXXX-XXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYL----KSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNLKDGL 1278 R+ +P + +E P++ ++ W L + F + Y+ + CI + +D+T +CSL+S D+ +++ + NI Q P F + I ++ F G+S+ S I ++ F CY++ I +V+ S S + L E PS PP+ + V +S S+ I W +P WNG++TG VY+ +++K E+ + D+T V+S + + + ++++ NC G S KS P+ +SE +N S N+ I+L + W+I L V ++++WL+L F V C + +T + P+G + L Sbjct: 648 RQSTGVPGVIKLERMLPQVISSTSARVIWSLENPVDA---IPAVRGFSVRYKEAPLTACISARL----HDAT-------FCSLRSGDSIKMRLHTYQQKLNIASLKATQGVSLVPHQEPEMFVDVPINQAHDF-GSSW---STTITHLKPFRCYSLLIQPNTVYPRQSSNESALFLTQEDVPSSPPQIIGVKKMSNHSVEISWTVPPTDSWNGLLTGFVVYVLNAAQNDKRELKFSYGDTT--GVVSGLKTGEIYHLQMAAVNCRGSSSKSIPINF-SVSEGGIINESSPADGNNGGIHL--QPWVIGIL-VGALVIWLLLMFFGVLFCLRQ----------RTQTKQRYLPPVGGGFSEDL 975
BLAST of SMED30022579 vs. TrEMBL
Match: A0A183AAP3 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS4028 PE=4 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.314e-14 Identity = 74/342 (21.64%), Postives = 152/342 (44.44%), Query Frame = 1 Query: 238 RNKRKKIQIPRIKLIEPEITKDHKIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKC---IVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLKIIDFNFS--------PNIDKDFQVPIDFQKINITKSSHFP--GNSYAQVSWLIPNVTFFNCYNISIFXX------XXXXXXXXXXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITG--SNVYLKSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDS-LVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFR 1197 R + K++QI I+ ++ D ++ ++W + ET F + + V +L+C I+E+ + + + YCSL D+E L + + + D + + I N+ + +H G + Q + + N+ F CY I I + S K +L E PS PP V V+W+++ +I+W+ P WNG++TG +Y + + ++ + S + + + ++L++I+ C G S+P+ L + +N+ + LV + ++ + L + W + T+ + SI+ W ++ L + C K ++ Sbjct: 618 RERIKQLQIDHIQF---QVLTDSQLHIQWTVT---ETATLLNFINGFTVRAQEVGLLRCVGSILEQNSESIHHDRTFSSRQTYCSLHYRDSEGLAGMVYRLEGLQRLYTESSTDANHPIMISTDISNLPRPTHSNEIGAHFYQGT--LRNLRPFQCYEIRISAYIVHNSYGKLEGHSSAPKFVLTSERAPSAPPSAVSVAWVAKTRAHIRWNAPLVNSWNGLLTGYVVQIYGELTQEPQIINVSHSILSIDVDLLPRPEAYLVQIAAVTCSGVGVPSSPIRLVPTTYTTYVNASTDLVPKGNKTVELLAQPWFVGTM-IGSIVAWCIIIALVAFFCFRKRYK 950
BLAST of SMED30022579 vs. TrEMBL
Match: A0A2H1CX77 (Immunoglobulin I-set domain protein OS=Fasciola hepatica OX=6192 GN=D915_000146 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.582e-13 Identity = 83/372 (22.31%), Postives = 157/372 (42.20%), Query Frame = 1 Query: 217 FKSGK*ARNKRKKIQIPRIKLIEPEITKDHKIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLKII--DFNFSPNIDKDFQVPIDFQKINITKSSHFP---------GNSYAQVSWLIPNVTFFNCYNISI--------FXXXXXXXXXXXXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNK--VISQVNSKLSWLIRISIKNCVGESGKSTPVVLH---------------------RISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSK---SFR 1197 F S K + ++I R+ L P +K ++++ W +++ T YT +Y R +++++C+ + + ++YCSL+ + T + + + + + + ++ + ++FP G+ + S LI ++ F CY +S+ F K+ V+++ M E+ PS PPE V W + + W P WNG++ G +YL + FN S K VI + ++LI+++ C G +S P+ L ++E Q+ S S E+ L +K W I+T+ ++S+L+W L L + CC + SFR Sbjct: 740 FVSDKELLQGMRNVEISRVHL-HPISSK--RMRVSWTVHERPHVIQAITGYTIYY---RKINLMQCVPSSLQTVDERAVSTELGDSYCSLRPVSDRTPRDLYQELQSMQRMRQQLATALTEPRLQMDVKANFPLDTSDTEPKGSVTYEGSGLIRDLDPFQCYEVSVKPHSTDSLFGKTEGRESVTHTAMTF--ESFPSLPPERVVAKWTGIHDLTLSWSQPPVSHWNGLLRGYTIYLYDELARDHQTFNVSASEKTTVIKGLTGSNAYLIQLAACTCKGVGLRSKPLRLDPGFHGQLGRGVGWGFDPNTGLPVTESAQIESTS---EDGTSGRLIQKPWFISTM-ISSLLLWFALIGL-ITFCCRRQPYSFR 1098
BLAST of SMED30022579 vs. TrEMBL
Match: A0A0R3SPT7 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7009 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-12 Identity = 77/285 (27.02%), Postives = 133/285 (46.67%), Query Frame = 1 Query: 370 TQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDT--ETLKIIDFNFSPNIDKD--------FQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISIFXXXXXXXXXX-XXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYL----KSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLC 1179 T F + Y+ V + KCI +DST +CSL+S D+ L I + +D Q P F + I ++ F G+S+ S I ++ F CY++ + +V+ + S + L E PS PP+ + V +S S+ I W +P WNG++TG VY+ + +K E+ + D+T V+S + + + ++++ NC G S KS P+ + +S N+ I L + W+I +VV +++WL++ F V C Sbjct: 687 TGFSVRYKEVPLTKCISAYL----HDST-------FCSLRSGDSIKTRLNIYQQKLNTASLRDTQGVSLVPHQEPEMFADVPIDQAHDF-GSSW---STTITHLKPFRCYSLLVQPNTVYPRRSNNESSLFLTQEDAPSAPPQIIGVKKMSNHSVEISWTVPPTDSWNGLLTGFVVYVFNAAQDDKRELKFSYGDTT--GVVSGLKTGEIYHLQMTAVNCRGSSSKSIPINFSVSEGGIISDSSPSTDANNGYIQL--QPWIIG-IVVGVLVIWLLVMFFGVIFC 951
BLAST of SMED30022579 vs. TrEMBL
Match: A0A504YZE7 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_01703 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.903e-12 Identity = 80/361 (22.16%), Postives = 153/361 (42.38%), Query Frame = 1 Query: 250 KKIQIPRIKLIEPEITKDHKIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLKII--DFNFSPNIDKDFQVPIDFQKINITKSSHFP---------GNSYAQVSWLIPNVTFFNCYNISI--------FXXXXXXXXXXXXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNK--VISQVNSKLSWLIRISIKNCVGESGKSTPVVLH---------------------RISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSK---SFR 1197 + ++I R+ L P +K ++++ W +++ T YT +Y R +++++C+ + + ++YCSL+ T + + + + + + ++ + ++FP G+ + S LI ++ F CY +S+ F K+ V+++ M E+ PS PPE V W + + W P WNG++ G +YL + FN S K VI + ++LI+++ C G +S P+ L ++E Q+ S S E+ L +K W I+T+ ++S+L+W L L + CC + SFR Sbjct: 751 RNVEISRVHL-HPISSK--RMRVSWTVHERPHVIQAITGYTIYY---RKINLMQCVPTSLQKVDERAVSTELGDSYCSLRPASDRTPRDLYQELQSMQKMRQQSTTALTEPRLQMDVKANFPLDTSDTEPKGSVTYEGSGLIRDLDPFQCYEVSVKPHSTDSLFGKTEGRESVTHTAMTF--ESFPSLPPERVVAKWTGIHDLTLSWSQPPVSHWNGLLRGYTIYLYDELARDHQTFNVSASEKTTVIKGLTGSNAYLIQLAAGTCKGVGLRSKPLRLDPGFHGQLGRGVGWGFDPNTGLPVTESAQIESTS---EDGTSGRLIQKPWFISTM-ISSLLLWFALIGL-ITFCCRRQPYSFR 1098
BLAST of SMED30022579 vs. Planmine SMEST
Match: SMESG000001429.1 (SMESG000001429.1) HSP 1 Score: 1107.43 bits (2863), Expect = 0.000e+0 Identity = 609/616 (98.86%), Postives = 611/616 (99.19%), Query Frame = 1 Query: 259 QIPRIKLIEPEITKDHKIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLKIIDFNFSPNIDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISIFXXXXXXXXXXXXXMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNLKDGLISXXXXXXXXXXXXXXXXXEKMFNINHLGLSPASSNLFCNPYASTQIFEPLSDNRIGDPTNDYVHSNRTEQEKMNLYYLSSPIFDSAAMSDIGHNSVNFFVPNNQEYPDQKNIQNPTNSNNNHLIPFSLYRTPDETTNSQSNLHFENKSSPRKEQFVELSVLKNNGMISNLLISTAPXXXXXXXXXXXXXXXXXXXXXXXXXXLTNEHVPRMKKPNAQPKPNKRRHDPGDFFDQSTEMTHLLSQHPENRSPFASKDSNHVYDIPYSDTVSIIDKDN 2106 Q +IKLIEPEITKDHKIQLRWYLNKEEETGFKS LYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVP LNNYCSLKSMDTETLKIIDFNFSPNIDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISIFSKSVHNSVVSNSKMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNLKDGLISNPNNDKDNTFNDNDNDNEKMFNINHLGLSPASSNLFCNPYASTQIFEPLSDNRIGDPTNDYVHSNRTEQEKMNLYYLSSPIFDSAAMSDIGHNSVNFFVPNNQEYPDQKNIQNPTNSNNNHLIPFSLYRTPDETTNSQSNLHFENKSSPRKEQFVELSVLKNNGMISNLLISTAPFSDQFTTSSKSKSTNNSSNSDSSHHQLTNEHVPRMKKPNAQPKP+KRRHDPGDFFDQSTEMTHLLSQHPENRSPF SKDSNHVYDIPYSDTVSIIDKDN Sbjct: 645 QFTKIKLIEPEITKDHKIQLRWYLNKEEETGFKSILYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPALNNYCSLKSMDTETLKIIDFNFSPNIDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISIFSKSVHNSVVSNSKMILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNLKDGLISNPNNDKDNTFNDNDNDNEKMFNINHLGLSPASSNLFCNPYASTQIFEPLSDNRIGDPTNDYVHSNRTEQEKMNLYYLSSPIFDSAAMSDIGHNSVNFFVPNNQEYPDQKNIQNPTNSNNNHLIPFSLYRTPDETTNSQSNLHFENKSSPRKEQFVELSVLKNNGMISNLLISTAPFSDQFTTSSKSKSTNNSSNSDSSHHQLTNEHVPRMKKPNAQPKPSKRRHDPGDFFDQSTEMTHLLSQHPENRSPFTSKDSNHVYDIPYSDTVSIIDKDN 1260
BLAST of SMED30022579 vs. Planmine SMEST
Match: SMESG000066973.1 (SMESG000066973.1) HSP 1 Score: 89.3521 bits (220), Expect = 7.068e-18 Identity = 103/419 (24.58%), Postives = 180/419 (42.96%), Query Frame = 1 Query: 307 KIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLK--II--DF-NFSPN-----------IDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISI---FXXXXXXXXXXXXXMILVPETRPSQPPENVQVSW-LSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVL---KFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNL-----KDGLISXXXXXXXXXXXXXXXXXEKMFNINHLGLSPASSNLFCNPYASTQIFEPLSDNR-IGDPTNDYVHS 1476 K++L W + + + G + F + Y V + +C+ + G+ YCS + + ++ I+ DF N SP +D F++P D I KS ++ + F+CY ++ + S S S+ L+ E PSQPP+N++ W + ++ I + LP WNG ++G V++ +N S +L KFND+ + I ++ + S+ + +S+ NC GE +S RI V ++ ++ W I +VV +++ W++L L VYLCC + I F K E P+ K+L K + S N+ + ++ + N NH+ +S C PYAS I + + ++ IG T Y S Sbjct: 624 KVKLEWQIVRGDSKG--GIIIEGFKIRYTMVPLSRCLDDGNQGHMKR-------KRYCSFQGRSLDDIRNWILQSDFWNVSPASNVQSNLTSGVVDFKFRLPED---ATIVKS-------------IVTGLNPFSCYEFTVEAYYENPSVTSRDSQSQNTLLFEEIPSQPPQNIRPFWSKNRNTLIIHYILPPNHTWNGFLSGIYVHIFANDSRSLLGSMKFNDTFKKIEIPNLDDRKSYSLHLSVFNCRGEGVRS-----QRI----------YVPARTEPPPYEQQAWFIPVIVVGTLIFWILLCCLVVYLCCIRFQLITKSPKFKSKDCEINLEPLMKDLPNRINKSCVKSQEANNYYKSGSEALYSATSIINPNHMNTGSVTSGT-CTPYASASIVDSIDNSSDIGTFTKFYTGS 1001
BLAST of SMED30022579 vs. Planmine SMEST
Match: SMESG000066973.1 (SMESG000066973.1) HSP 1 Score: 88.9669 bits (219), Expect = 7.698e-18 Identity = 103/419 (24.58%), Postives = 180/419 (42.96%), Query Frame = 1 Query: 307 KIQLRWYLNKEEETGFKSTLYTQFYLNYRSVSILKCIVEKFNGNPYDSTVVPVLNNYCSLKSMDTETLK--II--DF-NFSPN-----------IDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIPNVTFFNCYNISI---FXXXXXXXXXXXXXMILVPETRPSQPPENVQVSW-LSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVL---KFNDSTQNKVISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQKINLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFRIPGHKFFHVKTSESIETPIGKNL-----KDGLISXXXXXXXXXXXXXXXXXEKMFNINHLGLSPASSNLFCNPYASTQIFEPLSDNR-IGDPTNDYVHS 1476 K++L W + + + G + F + Y V + +C+ + G+ YCS + + ++ I+ DF N SP +D F++P D I KS ++ + F+CY ++ + S S S+ L+ E PSQPP+N++ W + ++ I + LP WNG ++G V++ +N S +L KFND+ + I ++ + S+ + +S+ NC GE +S RI V ++ ++ W I +VV +++ W++L L VYLCC + I F K E P+ K+L K + S N+ + ++ + N NH+ +S C PYAS I + + ++ IG T Y S Sbjct: 652 KVKLEWQIVRGDSKG--GIIIEGFKIRYTMVPLSRCLDDGNQGHMKR-------KRYCSFQGRSLDDIRNWILQSDFWNVSPASNVQSNLTSGVVDFKFRLPED---ATIVKS-------------IVTGLNPFSCYEFTVEAYYENPSVTSRDSQSQNTLLFEEIPSQPPQNIRPFWSKNRNTLIIHYILPPNHTWNGFLSGIYVHIFANDSRSLLGSMKFNDTFKKIEIPNLDDRKSYSLHLSVFNCRGEGVRS-----QRI----------YVPARTEPPPYEQQAWFIPVIVVGTLIFWILLCCLVVYLCCIRFQLITKSPKFKSKDCEINLEPLMKDLPNRINKSCVKSQEANNYYKSGSEALYSATSIINPNHMNTGSVTSGT-CTPYASASIVDSIDNSSDIGTFTKFYTGS 1029
BLAST of SMED30022579 vs. Planmine SMEST
Match: SMESG000018027.1 (SMESG000018027.1) HSP 1 Score: 53.1434 bits (126), Expect = 8.071e-7 Identity = 37/165 (22.42%), Postives = 75/165 (45.45%), Query Frame = 1 Query: 727 ILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNKV--ISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQK------INLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFR 1197 IL ++ P++ P ++ WLS S+ I W + NGI+ G ++++ N + S ++ V + + + +++ I+ C GE +S ++L S + ++ + L Q ++ K+ W I+ +VV L W M+ + +C S R Sbjct: 86 ILTYDSVPTKSPTDLTARWLSNTSVEISWKPAPMRHINGILKGYSLHIIGNDTNSTRSIEVSPKSTVVRVQDLLINMPYIVHIAASTCQGEGIRSAGLMLTASSSLITMSPNYLERRLGQNFAKPIIASVTKQPWFISIMVVGGCL-WFMICAFILVVCRSMYLR 249
BLAST of SMED30022579 vs. Planmine SMEST
Match: SMESG000018027.1 (SMESG000018027.1) HSP 1 Score: 53.1434 bits (126), Expect = 8.306e-7 Identity = 37/165 (22.42%), Postives = 75/165 (45.45%), Query Frame = 1 Query: 727 ILVPETRPSQPPENVQVSWLSEESMNIKWDLPDRQFWNGIITGSNVYLKSNKSEIVLKFNDSTQNKV--ISQVNSKLSWLIRISIKNCVGESGKSTPVVLHRISEDLQLNSDSLVIENSQK------INLFKKTWMIATLVVTSILVWLMLSFLTVYLCCSKSFR 1197 IL ++ P++ P ++ WLS S+ I W + NGI+ G ++++ N + S ++ V + + + +++ I+ C GE +S ++L S + ++ + L Q ++ K+ W I+ +VV L W M+ + +C S R Sbjct: 86 ILTYDSVPTKSPTDLTARWLSNTSVEISWKPAPMRHINGILKGYSLHIIGNDTNSTRSIEVSPKSTVVRVQDLLINMPYIVHIAASTCQGEGIRSAGLMLTASSSLITMSPNYLERRLGQNFAKPIIASVTKQPWFISIMVVGGCL-WFMICAFILVVCRSMYLR 249 The following BLAST results are available for this feature:
BLAST of SMED30022579 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30022579 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30022579 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30022579 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30022579 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30022579 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022579 ID=SMED30022579|Name=SMED30022579|organism=Schmidtea mediterranea sexual|type=transcript|length=2327bpback to top protein sequence of SMED30022579-orf-1 >SMED30022579-orf-1 ID=SMED30022579-orf-1|Name=SMED30022579-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=539bp MDTETLKIIDFNFSPNIDKDFQVPIDFQKINITKSSHFPGNSYAQVSWLIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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