Triadin-like isoform X4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022531 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 11
Homology
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: V3YYL0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236810 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.565e-48 Identity = 88/200 (44.00%), Postives = 137/200 (68.50%), Query Frame = 3 Query: 207 KKEFIPDVYNDLHPYTEIS--EFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTP----RENMENKKTPK--QKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 782 +K+ P ++NDL PY + S ++++ + ++ + R TA+ L DPW +L+ D+ + + ++ P R + KK K +++ EGST LPKY V LE DLA K+LY+ DVPMLR+ L +S N+T+KI+ +Y +TKQDFYRM LDKL+E+HP+NR++++STY+AYLQN PGSKKAI EC+K++++++K Sbjct: 73 QKKHTPFIFNDLKPYYDTSSQRYLIETPEELQHCYSSRTTAIGLIDPWKNLEMDKSV----LPVLEPKAVNRGETQKKKEKKIDERAKKTKHEGSTRLPKYPVVTLETSDLATKKLYYSDVPMLREELKQKYSANATKKIEEDYEKTKQDFYRMDLDKLNEVHPVNREHMRSTYFAYLQNTPGSKKAINECVKSIDKTEK 268
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A2T7PFQ4 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_07688 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.020e-39 Identity = 76/199 (38.19%), Postives = 120/199 (60.30%), Query Frame = 3 Query: 207 KKEFIPDVYNDLHPY--TEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENM--ENKKTPKQ--------KSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNL 767 +K+ P ++N L PY T F++ + G R TA LCDPWVDL D+++ + ++P+ E+KK+ K K+ + KE +P + + LE DLA ++LY+ DVPMLRK L +S + +K++ +Y RT+QDFYR+ LDK+D++ P +R ++ STY AYLQN PGS++A+ EC+++L Sbjct: 107 RKKNTPFIFNSLAPYYDTHTPRFLINLRDGHFMGHTSRRTAQGLCDPWVDLCMDKDV----LPAISPQHTTIHEHKKSSKHHGHKQHEHKNKQERKEDDERMPLFPIVTLETKDLATRQLYYSDVPMLRKELKTKYSSQAQQKVEADYKRTRQDFYRLDLDKIDQVPPGSRQHMTSTYLAYLQNTPGSRRAVNECVRSL 301
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A1S3J3E8 (uncharacterized protein LOC106169858 OS=Lingula unguis OX=7574 GN=LOC106169858 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.339e-36 Identity = 75/201 (37.31%), Postives = 119/201 (59.20%), Query Frame = 3 Query: 210 KEFIPDVYNDLHPY--TEISEFILKKNNDKE---NGFLLRNTAVDLCDPWVDLKYDQ---------EIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770 KE P ++N L PY T + +++ D + + R TA+ LCDPW L DQ EI++ + ++ E+K PK KEGST LPK+ ++ D+ ++L + DV LR+ + D ++ ++ ++++ EY RTKQDF+RM LDK++EIHP +R ++S Y+AYLQN PG+KKA++ECIK ++ Sbjct: 56 KEHSPFIFNTLGPYCGTSAASYLINGPEDTKLVSRSYATRATAIGLCDPWTALAMDQKPSPRVEPPEIKS--LDELSASRKKEDKDRPK-------KEGSTRLPKFPAVEVDAKDMRDRKLLYSDVATLRQEIKDKYTTSAQKRVNEEYNRTKQDFFRMELDKMEEIHPNSRPIMRSAYFAYLQNTPGAKKAVKECIKEMD 247
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A3S1BVW3 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_016076 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.782e-36 Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 3 Query: 420 KKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESK 779 KK +SS K GST LPK+ V NLE DLA K+L++ DVP LR L +S ++ K+ +Y RT+QDFYRM LDKLD++HP+NR ++ S Y+AYLQN PGSKKAI EC++ L K Sbjct: 8 KKAAGSQSSPARKGGSTRLPKFPVVNLETRDLATKQLFYSDVPALRHELKTKYSSSAKTKVAEDYERTQQDFYRMELDKLDQVHPINRKHMTSAYFAYLQNTPGSKKAINECVRGLRSGK 127
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A2C9L4Q3 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106079368 PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.819e-36 Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = 3 Query: 285 NDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQ-----KSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNL 767 ++K GF R+TA L DPWVDL+ E+ +++PR+ N +T K+ K N+ + +T P V ++ +L K LY+ DVP LR+ L +S N+ KI +YTRT+Q+FYRM LD+LD++HP+NR ++ Y+AYLQN PGSKKA+ EC+ L Sbjct: 3 DEKIQGFSSRSTAQTLIDPWVDLRMSTELPP----IISPRQATLNAETSKKEGRAKKPPNREETAATRFP---VIRMDLKELETKPLYYSDVPTLREHLKTKYSANAQAKIKEDYTRTQQEFYRMELDRLDQVHPVNRKHMTGVYFAYLQNTPGSKKAVTECVGKL 161
BLAST of Triadin-like isoform X4 vs. Ensembl Nematostella
Match: EDO32611 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUJ2]) HSP 1 Score: 55.4546 bits (132), Expect = 5.796e-9 Identity = 49/200 (24.50%), Postives = 90/200 (45.00%), Query Frame = 3 Query: 210 KEFIPDVYNDLHPY--TEISEFILK--KNNDKE---NGFLLRNTAVDLCDPWVDLKYDQ---EIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKY---YVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770 +EF PD++N L PY T I +I+ +N D + G+ R A+ + DP + K D ++ +I P + + + S GST LP V ++ F ++ R + + + ++ +Y RT +D+ RM L +L ++ +R ++K ++YL + GS KA++ K L+ Sbjct: 93 REFTPDIFNSLSPYYNTYIVNYIVHELENPDPQVPRTGWGHRAMALGVIDPEISWKMDNFPGPVQPSRI----PGTLFKARNWSRNLSGKDGDLGSTRLPPLPMPSVPKFHQATFQPNKMTFNELGQFRSEMKNMTQKLAEKRSKEDYDRTVKDWQRMNLSELKDLPAHSRYHVKKAIFSYLATSQGSAKALKPLTKELQ 288
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000069834.1 (SMESG000069834.1) HSP 1 Score: 454.521 bits (1168), Expect = 8.317e-164 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 3 Query: 63 MSKSSSRNKAGHGKSEKNNSXXXXXXXXXXXXXXXXHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 782 MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK Sbjct: 1 MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 240
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000025109.1 (SMESG000025109.1) HSP 1 Score: 76.2554 bits (186), Expect = 2.995e-15 Identity = 58/206 (28.16%), Postives = 101/206 (49.03%), Query Frame = 3 Query: 210 KEFIPDVYNDLHPY--TEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIIL----------------VTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPM-NRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770 KE +P ++NDL PY T + E + +G + R TA+DLC+PW + DKIIL ++ R +K K K S++S G Y+ +++P K + + LR N + +I+ +Y +TK D YR+ L++++ + ++ ++S +AYLQN+PGS++A+ E I N++ Sbjct: 1377 KEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPW------ESYEMDKIILPPIRVSSSYLSSRSPQLSKRSARPDKSATKNKISHRSDLG-------YIEPIKEP---SKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYRLSLNRINSNKSIRSKSAIRSALFAYLQNSPGSRRALYEVIHNID 1566 The following BLAST results are available for this feature:
BLAST of Triadin-like isoform X4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Triadin-like isoform X4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Triadin-like isoform X4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Triadin-like isoform X4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022531 ID=SMED30022531|Name=Triadin-like isoform X4|organism=Schmidtea mediterranea sexual|type=transcript|length=849bpback to top protein sequence of SMED30022531-orf-1 >SMED30022531-orf-1 ID=SMED30022531-orf-1|Name=SMED30022531-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=241bp MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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