Triadin-like isoform X4

Overview
NameTriadin-like isoform X4
Smed IDSMED30022531
Length (bp)849
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Triadin-like isoform X4 (SMED30022531) t-SNE clustered cells

Violin plots show distribution of expression levels for Triadin-like isoform X4 (SMED30022531) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Triadin-like isoform X4 (SMED30022531) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Triadin-like isoform X4 (SMED30022531) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30022531

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30022531h1SMcG0016186 SmedASXL_001394SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
pharynxSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30022531h1SMcG0016186 dd_Smed_v6_5981_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
reproductive organSMED30022531h1SMcG0016186 Contig640GPL15192PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30022531h1SMcG0022251 Contig640GPL15192PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
epidermisSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
ciliated epithelial cellSMED30022531h1SMcG0016186 dd_Smed_v4_5981_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: V3YYL0 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236810 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.565e-48
Identity = 88/200 (44.00%), Postives = 137/200 (68.50%), Query Frame = 3
Query:  207 KKEFIPDVYNDLHPYTEIS--EFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTP----RENMENKKTPK--QKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 782
            +K+  P ++NDL PY + S   ++++   + ++ +  R TA+ L DPW +L+ D+ +    + ++ P    R   + KK  K  +++     EGST LPKY V  LE  DLA K+LY+ DVPMLR+ L   +S N+T+KI+ +Y +TKQDFYRM LDKL+E+HP+NR++++STY+AYLQN PGSKKAI EC+K++++++K
Sbjct:   73 QKKHTPFIFNDLKPYYDTSSQRYLIETPEELQHCYSSRTTAIGLIDPWKNLEMDKSV----LPVLEPKAVNRGETQKKKEKKIDERAKKTKHEGSTRLPKYPVVTLETSDLATKKLYYSDVPMLREELKQKYSANATKKIEEDYEKTKQDFYRMDLDKLNEVHPVNREHMRSTYFAYLQNTPGSKKAINECVKSIDKTEK 268          
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A2T7PFQ4 (Uncharacterized protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_07688 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.020e-39
Identity = 76/199 (38.19%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  207 KKEFIPDVYNDLHPY--TEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENM--ENKKTPKQ--------KSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNL 767
            +K+  P ++N L PY  T    F++   +    G   R TA  LCDPWVDL  D+++    +  ++P+     E+KK+ K         K+  + KE    +P + +  LE  DLA ++LY+ DVPMLRK L   +S  + +K++ +Y RT+QDFYR+ LDK+D++ P +R ++ STY AYLQN PGS++A+ EC+++L
Sbjct:  107 RKKNTPFIFNSLAPYYDTHTPRFLINLRDGHFMGHTSRRTAQGLCDPWVDLCMDKDV----LPAISPQHTTIHEHKKSSKHHGHKQHEHKNKQERKEDDERMPLFPIVTLETKDLATRQLYYSDVPMLRKELKTKYSSQAQQKVEADYKRTRQDFYRLDLDKIDQVPPGSRQHMTSTYLAYLQNTPGSRRAVNECVRSL 301          
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A1S3J3E8 (uncharacterized protein LOC106169858 OS=Lingula unguis OX=7574 GN=LOC106169858 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.339e-36
Identity = 75/201 (37.31%), Postives = 119/201 (59.20%), Query Frame = 3
Query:  210 KEFIPDVYNDLHPY--TEISEFILKKNNDKE---NGFLLRNTAVDLCDPWVDLKYDQ---------EIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770
            KE  P ++N L PY  T  + +++    D +     +  R TA+ LCDPW  L  DQ         EI++  +  ++     E+K  PK       KEGST LPK+    ++  D+  ++L + DV  LR+ + D ++ ++ ++++ EY RTKQDF+RM LDK++EIHP +R  ++S Y+AYLQN PG+KKA++ECIK ++
Sbjct:   56 KEHSPFIFNTLGPYCGTSAASYLINGPEDTKLVSRSYATRATAIGLCDPWTALAMDQKPSPRVEPPEIKS--LDELSASRKKEDKDRPK-------KEGSTRLPKFPAVEVDAKDMRDRKLLYSDVATLRQEIKDKYTTSAQKRVNEEYNRTKQDFFRMELDKMEEIHPNSRPIMRSAYFAYLQNTPGAKKAVKECIKEMD 247          
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A3S1BVW3 (Uncharacterized protein (Fragment) OS=Elysia chlorotica OX=188477 GN=EGW08_016076 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.782e-36
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  420 KKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESK 779
            KK    +SS   K GST LPK+ V NLE  DLA K+L++ DVP LR  L   +S ++  K+  +Y RT+QDFYRM LDKLD++HP+NR ++ S Y+AYLQN PGSKKAI EC++ L   K
Sbjct:    8 KKAAGSQSSPARKGGSTRLPKFPVVNLETRDLATKQLFYSDVPALRHELKTKYSSSAKTKVAEDYERTQQDFYRMELDKLDQVHPINRKHMTSAYFAYLQNTPGSKKAINECVRGLRSGK 127          
BLAST of Triadin-like isoform X4 vs. TrEMBL
Match: A0A2C9L4Q3 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106079368 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.819e-36
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  285 NDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQ-----KSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNL 767
            ++K  GF  R+TA  L DPWVDL+   E+      +++PR+   N +T K+     K  N+ +  +T  P   V  ++  +L  K LY+ DVP LR+ L   +S N+  KI  +YTRT+Q+FYRM LD+LD++HP+NR ++   Y+AYLQN PGSKKA+ EC+  L
Sbjct:    3 DEKIQGFSSRSTAQTLIDPWVDLRMSTELPP----IISPRQATLNAETSKKEGRAKKPPNREETAATRFP---VIRMDLKELETKPLYYSDVPTLREHLKTKYSANAQAKIKEDYTRTQQEFYRMELDRLDQVHPVNRKHMTGVYFAYLQNTPGSKKAVTECVGKL 161          
BLAST of Triadin-like isoform X4 vs. Ensembl Nematostella
Match: EDO32611 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUJ2])

HSP 1 Score: 55.4546 bits (132), Expect = 5.796e-9
Identity = 49/200 (24.50%), Postives = 90/200 (45.00%), Query Frame = 3
Query:  210 KEFIPDVYNDLHPY--TEISEFILK--KNNDKE---NGFLLRNTAVDLCDPWVDLKYDQ---EIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKY---YVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770
            +EF PD++N L PY  T I  +I+   +N D +    G+  R  A+ + DP +  K D     ++  +I    P    + +   +  S      GST LP      V           ++ F ++   R  + +     + ++   +Y RT +D+ RM L +L ++   +R ++K   ++YL  + GS KA++   K L+
Sbjct:   93 REFTPDIFNSLSPYYNTYIVNYIVHELENPDPQVPRTGWGHRAMALGVIDPEISWKMDNFPGPVQPSRI----PGTLFKARNWSRNLSGKDGDLGSTRLPPLPMPSVPKFHQATFQPNKMTFNELGQFRSEMKNMTQKLAEKRSKEDYDRTVKDWQRMNLSELKDLPAHSRYHVKKAIFSYLATSQGSAKALKPLTKELQ 288          
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000069834.1 (SMESG000069834.1)

HSP 1 Score: 454.521 bits (1168), Expect = 8.317e-164
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 3
Query:   63 MSKSSSRNKAGHGKSEKNNSXXXXXXXXXXXXXXXXHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 782
            MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK
Sbjct:    1 MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKKEFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK 240          
BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Match: SMESG000025109.1 (SMESG000025109.1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.995e-15
Identity = 58/206 (28.16%), Postives = 101/206 (49.03%), Query Frame = 3
Query:  210 KEFIPDVYNDLHPY--TEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYDQEIRTDKIIL----------------VTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPDLAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLDEIHPM-NRDNLKSTYYAYLQNNPGSKKAIRECIKNLE 770
            KE +P ++NDL PY  T + E    +     +G + R TA+DLC+PW      +    DKIIL                ++ R    +K   K K S++S  G       Y+  +++P    K   + +   LR     N     + +I+ +Y +TK D YR+ L++++    + ++  ++S  +AYLQN+PGS++A+ E I N++
Sbjct: 1377 KEHVPFIFNDLQPYGDTNMYEKFRHQKPKSASGAVTRMTAMDLCEPW------ESYEMDKIILPPIRVSSSYLSSRSPQLSKRSARPDKSATKNKISHRSDLG-------YIEPIKEP---SKSFIYSERKTLRYKNQSNPRPLPSSRIEDDYNKTKTDLYRLSLNRINSNKSIRSKSAIRSALFAYLQNSPGSRRALYEVIHNID 1566          
The following BLAST results are available for this feature:
BLAST of Triadin-like isoform X4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V3YYL01.565e-4844.00Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A2T7PFQ45.020e-3938.19Uncharacterized protein OS=Pomacea canaliculata OX... [more]
A0A1S3J3E81.339e-3637.31uncharacterized protein LOC106169858 OS=Lingula un... [more]
A0A3S1BVW32.782e-3653.33Uncharacterized protein (Fragment) OS=Elysia chlor... [more]
A0A2C9L4Q32.819e-3642.17Uncharacterized protein OS=Biomphalaria glabrata O... [more]
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BLAST of Triadin-like isoform X4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO326115.796e-924.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Triadin-like isoform X4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Triadin-like isoform X4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000069834.18.317e-164100.00SMESG000069834.1[more]
SMESG000025109.12.995e-1528.16SMESG000025109.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022531 ID=SMED30022531|Name=Triadin-like isoform X4|organism=Schmidtea mediterranea sexual|type=transcript|length=849bp
GTTGCTGCTTTTGCTGACATTTATTGTTTTTCATTTTTGCTTTTCATTTC
ACAATTTCAATAATGAGCAAATCCTCCTCGAGAAACAAAGCTGGCCACGG
GAAATCAGAGAAAAACAATTCTGAAGATGTCATTAAAAAGGAAGTAGATG
TAGTTAAAGAGAAATTAGAACATTTGACAGAAAAAGTGAAGAAAAACCAA
TATGAAAAAAAAGAATTTATTCCCGATGTTTACAATGATCTACATCCATA
TACAGAAATATCAGAGTTTATACTAAAAAAAAACAATGATAAAGAAAATG
GGTTTTTATTACGAAACACGGCCGTAGATCTCTGTGACCCTTGGGTGGAT
TTAAAATACGATCAAGAAATTAGAACAGACAAAATAATTCTTGTTACACC
GAGGGAAAACATGGAAAATAAAAAAACACCAAAACAAAAGTCATCAAACC
AATCAAAAGAAGGAAGTACTCACCTCCCAAAATATTACGTTTCGAATCTC
GAAGATCCAGATTTGGCAAAGAAAGAACTGTATTTTATCGATGTACCAAT
GTTGAGAAAAACTCTTCACGATAACTTTTCGATAAACTCGACGGAGAAAA
TAGATTTTGAATATACTCGCACAAAGCAAGATTTCTATCGAATGGGTCTA
GATAAACTGGACGAAATACATCCCATGAACCGGGACAATCTCAAGTCAAC
GTATTATGCGTACCTGCAAAATAATCCAGGGTCCAAAAAAGCCATTAGAG
AATGTATAAAGAATCTGGAAGAATCCAAGAAATAAGACAAGTATTGAAAT
GAGAAAATTCAATCAAATTGACTTTTATTTATTATTAATAAAAATTTTT
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protein sequence of SMED30022531-orf-1

>SMED30022531-orf-1 ID=SMED30022531-orf-1|Name=SMED30022531-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=241bp
MSKSSSRNKAGHGKSEKNNSEDVIKKEVDVVKEKLEHLTEKVKKNQYEKK
EFIPDVYNDLHPYTEISEFILKKNNDKENGFLLRNTAVDLCDPWVDLKYD
QEIRTDKIILVTPRENMENKKTPKQKSSNQSKEGSTHLPKYYVSNLEDPD
LAKKELYFIDVPMLRKTLHDNFSINSTEKIDFEYTRTKQDFYRMGLDKLD
EIHPMNRDNLKSTYYAYLQNNPGSKKAIRECIKNLEESKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000106ciliated epithelial cell
PLANA:0000418head
PLANA:0002032epidermal cell
PLANA:0002089reproductive organ
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..23