SMED30022498
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022498 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Alignments
SMED30022498 aligns in the following genomic locations:
Homology
BLAST of SMED30022498 vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 119.783 bits (299), Expect = 2.798e-31 Identity = 55/146 (37.67%), Postives = 90/146 (61.64%), Query Frame = -1 Query: 160 FIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 597 +IE+G + + DG + PQ +IC V AN ++K +KL+RH ++ H +P EFF RK ELK++ I L+ S+ A +A+ K YTI +TL+K C++++C ++ G+ K+ +PLSNDTI RRI +++N++E Sbjct: 741 YIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDME 886 HSP 2 Score: 34.6538 bits (78), Expect = 2.798e-31 Identity = 17/46 (36.96%), Postives = 31/46 (67.39%), Query Frame = -3 Query: 17 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLL 154 +I++++ Y+++Q+DE I+N ILL+YVR+E DI+E+ Sbjct: 889 LIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEH--DDDIKEEFF 932
BLAST of SMED30022498 vs. Ensembl Human
Match: ZMYM6 (zinc finger MYM-type containing 6 [Source:HGNC Symbol;Acc:HGNC:13050]) HSP 1 Score: 98.9821 bits (245), Expect = 3.114e-31 Identity = 50/130 (38.46%), Postives = 79/130 (60.77%), Query Frame = -1 Query: 160 PQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 549 PQ VIC + ++ ++K L H T H + KPV+FF +K E++ + SS KK + +E L+K S+ AF A KK ++I + L+KP + ++CS++ G K+ +IPLSN TI RI ++S +IE Sbjct: 766 PQCVICGEILSSENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAFQTAASKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNVTIQHRIDELSADIE 895 HSP 2 Score: 55.0694 bits (131), Expect = 3.114e-31 Identity = 22/51 (43.14%), Postives = 42/51 (82.35%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +IQK++++ ++A+Q+DES+ ISN +LL Y+R+ DY +D++E+LL C+++ Sbjct: 898 LIQKVRESKWFALQIDESSEISNITLLLCYIRFIDYDCRDVKEELLFCIEM 948
BLAST of SMED30022498 vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 119.398 bits (298), Expect = 3.197e-31 Identity = 55/146 (37.67%), Postives = 90/146 (61.64%), Query Frame = -1 Query: 160 FIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 597 +IE+G + + DG + PQ +IC V AN ++K +KL+RH ++ H +P EFF RK ELK++ I L+ S+ A +A+ K YTI +TL+K C++++C ++ G+ K+ +PLSNDTI RRI +++N++E Sbjct: 590 YIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDME 735 HSP 2 Score: 34.6538 bits (78), Expect = 3.197e-31 Identity = 17/46 (36.96%), Postives = 31/46 (67.39%), Query Frame = -3 Query: 17 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLL 154 +I++++ Y+++Q+DE I+N ILL+YVR+E DI+E+ Sbjct: 738 LIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEH--DDDIKEEFF 781
BLAST of SMED30022498 vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 100.523 bits (249), Expect = 1.460e-26 Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENK-LLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 E ++ +G G+ D P Q V+C+ + +NSSL +KL+RH T H YK K + FF + D + + K V+ +N+ + S+ ++HIA +A+TIG+ L+KPC +D+ +F +++ KI+++ LSN T+ RRI D++ +IE Sbjct: 112 ESYLSFGFTYF--GNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTVARRIKDLAADIE 260 HSP 2 Score: 38.1206 bits (87), Expect = 1.460e-26 Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = -3 Query: 11 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCC 124 +++Q+DES +S A+LL++VRY +K IEE LL C Sbjct: 273 FSLQLDESADVSGLAVLLVFVRYR--FNKSIEEDLLLC 308
BLAST of SMED30022498 vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 100.523 bits (249), Expect = 1.460e-26 Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENK-LLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 E ++ +G G+ D P Q V+C+ + +NSSL +KL+RH T H YK K + FF + D + + K V+ +N+ + S+ ++HIA +A+TIG+ L+KPC +D+ +F +++ KI+++ LSN T+ RRI D++ +IE Sbjct: 112 ESYLSFGFTYF--GNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTVARRIKDLAADIE 260 HSP 2 Score: 38.1206 bits (87), Expect = 1.460e-26 Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = -3 Query: 11 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCC 124 +++Q+DES +S A+LL++VRY +K IEE LL C Sbjct: 273 FSLQLDESADVSGLAVLLVFVRYR--FNKSIEEDLLLC 308
BLAST of SMED30022498 vs. Ensembl Zebrafish
Match: AL928808.1 (pep chromosome:GRCz11:20:17257101:17259573:-1 gene:ENSDARG00000101333.2 transcript:ENSDART00000166397.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL928808.1) HSP 1 Score: 46.595 bits (109), Expect = 2.449e-8 Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = -1 Query: 157 PQYVICESVSANSSLKANKLQRHFHTNHGPYKGK-PVEFFLRK------RDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMED----ICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIEA 549 P +IC++ + S KA+ L+RHF + H + P LRK + + + + F+KF + S+ A++IAR KK Y G+ +K C+ D +C + + + + + LS T+ +RI DI N +E Sbjct: 37 PFCLICQT--SLSHFKASNLERHFTSLHSAVAREFPKGSELRKHKVKTLKGQAEKQTQLFRKFSKHSETVTLASYQLAWNIARAKKPYLEGE-FVKKCLSDAVAILCPE--NENLKRSVKDLQLSRHTVEQRISDIDNSVET 173 HSP 2 Score: 29.6462 bits (65), Expect = 2.449e-8 Identity = 17/50 (34.00%), Postives = 30/50 (60.00%), Query Frame = -3 Query: 17 SNIIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKD--IEEKLL 160 ++++ LQK Y++I +DES + + I+VR + S+D I E+LL Sbjct: 173 THLLSDLQKCQYFSIALDESCDVQDKPQFAIFVR---FVSEDCTIREELL 219
BLAST of SMED30022498 vs. Ensembl Xenopus
Match: spag1 (sperm associated antigen 1 [Source:Xenbase;Acc:XB-GENE-853609]) HSP 1 Score: 43.8986 bits (102), Expect = 1.749e-7 Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = -1 Query: 163 DLPQYVICESVSANSSLKANKLQRHFHTNHGP----YKGKPVEFFLRK-RDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAK-INSIPLSNDTIGRRIIDISNEI 555 D PQ ++C SS K ++RH+ T HG Y G+ ++ + +L +++ F + + +K S A IA+ K ++ G TL+K C + ++ FG E AK + SI LS+ T+ R I I+ + Sbjct: 42 DKPQCLVC--AQTISSCKEYNVKRHYTTLHGAKYAKYTGEARLTIIKDLKSKLCKQKNIFSAVTTTQKAAVKASFLVAEEIAKRKYPFSSG-TLVKTCALKM-AEAFGNETMAKTVESISLSHQTVARHICTINQHL 174 HSP 2 Score: 30.0314 bits (66), Expect = 1.749e-7 Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = -3 Query: 50 LQKTLYYAIQMDESTHISNNAILLIYVRYED 142 L+ Y++I +DEST I++ L+I+VR D Sbjct: 182 LRSAPYFSIALDESTDITDTCQLVIFVRSVD 212
BLAST of SMED30022498 vs. Ensembl Xenopus
Match: ENSXETT00000016563.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:4:37379994:37381838:-1 gene:ENSXETG00000009412.1 transcript:ENSXETT00000016563.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 43.8986 bits (102), Expect = 1.862e-7 Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = -1 Query: 163 DLPQYVICESVSANSSLKANKLQRHFHTNHGP----YKGKPVEFFLRK-RDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAK-INSIPLSNDTIGRRIIDISNEI 555 D PQ ++C SS K ++RH+ T HG Y G+ ++ + +L +++ F + + +K S A IA+ K ++ G TL+K C + ++ FG E AK + SI LS+ T+ R I I+ + Sbjct: 42 DKPQCLVC--AQTISSCKEYNVKRHYTTLHGAKYAKYTGEARLTIIKDLKSKLCKQKNIFSAVTTTQKAAVKASFLVAEEIAKRKYPFSSG-TLVKTCALKM-AEAFGNETMAKTVESISLSHQTVARHICTINQHL 174 HSP 2 Score: 30.0314 bits (66), Expect = 1.862e-7 Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = -3 Query: 50 LQKTLYYAIQMDESTHISNNAILLIYVRYED 142 L+ Y++I +DEST I++ L+I+VR D Sbjct: 182 LRSAPYFSIALDESTDITDTCQLVIFVRSVD 212
BLAST of SMED30022498 vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 94.7449 bits (234), Expect = 1.231e-27 Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = -1 Query: 160 AKKAKLETNYDYCDKEKFIEYGCIV--IKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 648 AK+ +++ + Y ++I +G I+ + PQ VIC V + S+ L H H + KPV+FF K E++ + SS KK + +E L+K S+ AF IA K ++I + L+KP + ++CS++ G K+ +IPLSN TIG RI +S++IE Sbjct: 657 AKRRRVDFSQTY--NAEYIRFGFIICSGSEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIPLSNSTIGCRIKKLSDDIE 819 HSP 2 Score: 47.3654 bits (111), Expect = 1.231e-27 Identity = 19/51 (37.25%), Postives = 38/51 (74.51%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 ++QK++++ ++A+Q+DES+ + +LL YVR+ DY D++E+LL C ++ Sbjct: 822 LLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEM 872
BLAST of SMED30022498 vs. Ensembl Mouse
Match: Zmym6 (zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]) HSP 1 Score: 94.7449 bits (234), Expect = 1.263e-27 Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = -1 Query: 160 AKKAKLETNYDYCDKEKFIEYGCIV--IKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 648 AK+ +++ + Y ++I +G I+ + PQ VIC V + S+ L H H + KPV+FF K E++ + SS KK + +E L+K S+ AF IA K ++I + L+KP + ++CS++ G K+ +IPLSN TIG RI +S++IE Sbjct: 565 AKRRRVDFSQTY--NAEYIRFGFIICSGSEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMKTIPLSNSTIGCRIKKLSDDIE 727 HSP 2 Score: 46.9802 bits (110), Expect = 1.263e-27 Identity = 19/51 (37.25%), Postives = 38/51 (74.51%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 ++QK++++ ++A+Q+DES+ + +LL YVR+ DY D++E+LL C ++ Sbjct: 730 LLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDVKEELLFCTEM 780
BLAST of SMED30022498 vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 92.4337 bits (228), Expect = 5.182e-24 Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = -1 Query: 163 EKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDEL-KAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEI 603 E F++YG I+ PQ VIC V + S+K NKL+RHF + H + GK +F K D L KA+ + K ++ S+ A IAR K +T + LL P +D + G EF K++++ LSNDT+ RRI D+S +I Sbjct: 171 EGFLQYGFTSTITVGIERPQCVICGVVLSAESMKPNKLKRHFESKHSSFAGKDTNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMKPHTFAEHLLFPVAKDRVRVMIGDEFVTKLSAVSLSNDTVRRRIHDMSADI 318 HSP 2 Score: 37.3502 bits (85), Expect = 5.182e-24 Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = -3 Query: 2 AIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 121 +IQ+DEST ++N L++YVRY + D +++ LCC L Sbjct: 335 SIQLDESTDVANCLQLMVYVRYIN--DGDFKDEFLCCKPL 372
BLAST of SMED30022498 vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.159e-30 Identity = 55/146 (37.67%), Postives = 90/146 (61.64%), Query Frame = -1 Query: 160 FIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 597 +IE+G + + DG + PQ +IC V AN ++K +KL+RH ++ H +P EFF RK ELK++ I L+ S+ A +A+ K YTI +TL+K C++++C ++ G+ K+ +PLSNDTI RRI +++N++E Sbjct: 741 YIEFGFVAVIDGEVLKPQCIICGDVLANEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIAETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDME 886 HSP 2 Score: 34.6538 bits (78), Expect = 1.159e-30 Identity = 17/46 (36.96%), Postives = 31/46 (67.39%), Query Frame = -3 Query: 17 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLL 154 +I++++ Y+++Q+DE I+N ILL+YVR+E DI+E+ Sbjct: 889 LIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEH--DDDIKEEFF 932
BLAST of SMED30022498 vs. UniProt/SwissProt
Match: sp|O95789|ZMYM6_HUMAN (Zinc finger MYM-type protein 6 OS=Homo sapiens OX=9606 GN=ZMYM6 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.290e-30 Identity = 50/130 (38.46%), Postives = 79/130 (60.77%), Query Frame = -1 Query: 160 PQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 549 PQ VIC + ++ ++K L H T H + KPV+FF +K E++ + SS KK + +E L+K S+ AF A KK ++I + L+KP + ++CS++ G K+ +IPLSN TI RI ++S +IE Sbjct: 766 PQCVICGEILSSENMKPANLSHHLKTKHSELENKPVDFFEQKSLEMECQNSSLKKCLLVEKSLVKASYLIAFQTAASKKPFSIAEELIKPYLVEMCSEVLGSSAGDKMKTIPLSNVTIQHRIDELSADIE 895 HSP 2 Score: 55.0694 bits (131), Expect = 1.290e-30 Identity = 22/51 (43.14%), Postives = 42/51 (82.35%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +IQK++++ ++A+Q+DES+ ISN +LL Y+R+ DY +D++E+LL C+++ Sbjct: 898 LIQKVRESKWFALQIDESSEISNITLLLCYIRFIDYDCRDVKEELLFCIEM 948
BLAST of SMED30022498 vs. UniProt/SwissProt
Match: sp|Q49AG3|ZBED5_HUMAN (Zinc finger BED domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ZBED5 PE=2 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 6.052e-26 Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENK-LLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 E ++ +G G+ D P Q V+C+ + +NSSL +KL+RH T H YK K + FF + D + + K V+ +N+ + S+ ++HIA +A+TIG+ L+KPC +D+ +F +++ KI+++ LSN T+ RRI D++ +IE Sbjct: 112 ESYLSFGFTYF--GNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTVARRIKDLAADIE 260 HSP 2 Score: 38.1206 bits (87), Expect = 6.052e-26 Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = -3 Query: 11 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCC 124 +++Q+DES +S A+LL++VRY +K IEE LL C Sbjct: 273 FSLQLDESADVSGLAVLLVFVRYR--FNKSIEEDLLLC 308
BLAST of SMED30022498 vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.735e-26 Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENK-LLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 E ++ +G G+ D P Q V+C+ + +NSSL +KL+RH T H YK K + FF + D + + K V+ +N+ + S+ ++HIA +A+TIG+ L+KPC +D+ +F +++ KI+++ LSN T+ RRI D++ +IE Sbjct: 113 ESYLSFGFTYF--GNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTVARRIKDLAADIE 261 HSP 2 Score: 37.7354 bits (86), Expect = 6.735e-26 Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = -3 Query: 11 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCC 124 +++Q+DES +S A+LL++VRY +K IEE LL C Sbjct: 274 FSLQLDESADVSGLAVLLVFVRYR--FNKSIEEDLLLC 309
BLAST of SMED30022498 vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.313e-26 Identity = 53/151 (35.10%), Postives = 91/151 (60.26%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENK-LLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 E ++ +G G+ D P Q V+C+ + +NSSL +KL+RH T H YK K + FF + D + + K V+ +N+ + S+ ++HIA +A+TIG+ L+KPC +D+ +F +++ KI+++ LSN T+ RRI D++ +IE Sbjct: 113 ESYLSFGFTYF--GNRDAPHAQCVLCKKILSNSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAKDVVMRMFDEQYSKKIDAVQLSNSTVARRIKDLAADIE 261 HSP 2 Score: 37.7354 bits (86), Expect = 7.313e-26 Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = -3 Query: 2 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 124 +++Q+DES +S A+LL++VRY +K IEE LL C L Sbjct: 274 FSLQLDESADVSGLAVLLVFVRYR--FNKSIEEDLLLCESL 312
BLAST of SMED30022498 vs. TrEMBL
Match: J9LZ91 (DUF4371 domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2) HSP 1 Score: 178.333 bits (451), Expect = 1.232e-55 Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = -1 Query: 160 KKAKLETNYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 645 KK K+ NY Y +K+I YG I + +DLPQ VIC +V AN+SLK NKL RH TNH Y+ K +FFLRKRDELK + + K + +++ LKCS AA HIAR KK Y IG+ L+KPCM DICS++FG E +KI +IP+S+DTI +RI+ I+N+IE Sbjct: 42 KKVKISMNYTYKYIDKYIGYGLTYINENGVDLPQGVICGNVLANASLKPNKLLRHLETNHNEYRNKTTDFFLRKRDELKINKKNIKSYTTVDKVYLKCSFIAAMHIARTKKPYNIGEKLIKPCMVDICSELFGNEHVSKIKNIPMSDDTIHKRILCIANDIE 203 HSP 2 Score: 67.3958 bits (163), Expect = 1.232e-55 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +++K+ K+L+YAIQ+DEST ISN+AILLIYVRY D DI+E+ LC LKL Sbjct: 206 LVEKINKSLFYAIQLDESTDISNSAILLIYVRYIDDTFNDIKEEFLCTLKL 256
BLAST of SMED30022498 vs. TrEMBL
Match: X1WPB8 (DUF4371 domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.181e-54 Identity = 85/162 (52.47%), Postives = 112/162 (69.14%), Query Frame = -1 Query: 160 KKAKLETNYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 645 KK K+ NY Y +K+I YG I + +DL Q VIC +V AN+SLK NKL RH TNH Y+ K +FFLRKRDELK + + K + +++ LKCS AA HIAR KK Y IG+ L+KPCM DICS++FG E +KI +IP+S+DTI +RI+ I+N+IE Sbjct: 42 KKVKISMNYTYKYIDKYIGYGFTYINENGVDLSQGVICGNVLANASLKPNKLLRHLETNHNEYRNKTTDFFLRKRDELKINKKNIKSYTTVDKVYLKCSFIAAMHIARTKKPYNIGEKLIKPCMVDICSELFGNEHVSKIKNIPMSDDTIHKRILCIANDIE 203 HSP 2 Score: 67.0106 bits (162), Expect = 2.181e-54 Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +++K+ K+L+YAIQ+DEST ISN+AILLIYVRY D DI+E+ LC LKL Sbjct: 206 LVEKINKSLFYAIQLDESTDISNSAILLIYVRYIDDTFNDIKEEFLCTLKL 256
BLAST of SMED30022498 vs. TrEMBL
Match: A0A2S2QIN0 (SCAN domain-containing protein 3 (Fragment) OS=Sipha flava OX=143950 GN=SCAND3_1 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.295e-47 Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = -1 Query: 160 KKAKLET---NYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 645 KK KL + NYD E++IEYG +++ +IDLPQ +IC V AN+SLK NKL RH TNH YK + +FFLRK E K + K F + + K LKCS+ AA HIA+ KKAYTI + LLKPCM DI +++FG E+ KINSIP+SNDTI RRI ++ +IE Sbjct: 41 KKVKLTSKILNYD----ERYIEYGLTYLRENNIDLPQCIICSMVLANASLKPNKLLRHLETNHVHYKNRNKDFFLRKLHEFKESKKIIKSFPTEDKKYLKCSYLAAMHIAKSKKAYTICEKLLKPCMIDIFTELFGSEYATKINSIPMSNDTISRRINVMAVDIE 201
BLAST of SMED30022498 vs. TrEMBL
Match: A0A2S2R2G6 (SCAN domain-containing protein 3 OS=Sipha flava OX=143950 GN=SCAND3_13 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.116e-45 Identity = 75/150 (50.00%), Postives = 101/150 (67.33%), Query Frame = -1 Query: 160 KEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKL-LKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 606 K+ ++EYG + + D+PQ VIC AN+SLK NKL RH T+H YK +FFLRK +ELK + + ++E+K+ LKCS+ AA HIA+ KK Y+IG+ LLKPCM DIC+++F E KI IP+SNDTI RRI +SN+IE Sbjct: 53 KDSYVEYGFTYLNENGKDVPQCVICGMTLANASLKPNKLIRHMETSHAQYKNNTRDFFLRKFEELKKNKKMINTY-TVEDKIYLKCSYLAALHIAKSKKPYSIGEKLLKPCMIDICTELFSNEHVTKIKKIPMSNDTISRRINTMSNDIE 201 HSP 2 Score: 63.1586 bits (152), Expect = 2.116e-45 Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = -3 Query: 2 QKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 148 +K++K+++YAIQ+DEST I+N AILL+YVRY D DI+E+ CCL L Sbjct: 206 EKIKKSIFYAIQLDESTDINNEAILLMYVRYVDTDLNDIQEEFFCCLNL 254
BLAST of SMED30022498 vs. TrEMBL
Match: A0A2S2QDE8 (Zinc finger MYM-type protein 6 OS=Sipha flava OX=143950 GN=ZMYM6_0 PE=4 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.615e-37 Identity = 68/164 (41.46%), Postives = 98/164 (59.76%), Query Frame = -1 Query: 160 KKAKLETNYDYCDKEKFIEYGCIVIKDGHIDLP--QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 645 KK NY+ + +I+YG I D+P Q V+C + +N ++K KL RH + H + KP++FF+RK EL A++ ++ L+K S+ AF IA+CKK Y IG+TL+KPC+ D+ S+ G K+N +PLSNDTI RRIIDIS +IE Sbjct: 40 KKGTFVRNYN----DDYIKYGFICFSSDSNDIPKPQCVLCSVILSNEAMKPAKLIRHLESKHKEFNNKPIDFFIRKGKELTAQKKVMSATSKVDYSLVKASYLVAFRIAKCKKPYNIGETLIKPCLLDVTSEFLGPSATKKMNDLPLSNDTISRRIIDISVDIE 199 HSP 2 Score: 52.373 bits (124), Expect = 1.615e-37 Identity = 23/51 (45.10%), Postives = 38/51 (74.51%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +I K++ + +++IQ+DEST +S AILL YVR+ D+ + ++ E LLCC +L Sbjct: 202 VIDKIKLSKWFSIQLDESTDVSQKAILLCYVRFIDFQTSEMCEDLLCCCEL 252
BLAST of SMED30022498 vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.5001 bits (210), Expect = 4.700e-24 Identity = 48/142 (33.80%), Postives = 84/142 (59.15%), Query Frame = -1 Query: 133 LPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIEN--KLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIEAI*FKNYRK 552 LP V+C V AN +LK KL+RH T H Y KPVEFF K E ++++ + + S + K ++ S+ A IA+ K +TIG++L+ P +++ S + G++ ++N I LS++T+ RRI ++++++ K R+ Sbjct: 61 LPLCVVCSEVLANEALKTTKLRRHLETKHSEYASKPVEFFENKLKEYQSRKKTLELACSGTDHAKAVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRE 202 HSP 2 Score: 43.8986 bits (102), Expect = 4.700e-24 Identity = 22/51 (43.14%), Postives = 38/51 (74.51%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +I++++++ +YAIQ+DEST I+N + LL +VRYE +++I E +L C L Sbjct: 196 LIKRVRESRFYAIQLDESTDIANLSNLLAFVRYEH--NREIFEDILFCKPL 244
BLAST of SMED30022498 vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.5001 bits (210), Expect = 9.524e-24 Identity = 48/142 (33.80%), Postives = 84/142 (59.15%), Query Frame = -1 Query: 133 LPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIEN--KLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIEAI*FKNYRK 552 LP V+C V AN +LK KL+RH T H Y KPVEFF K E ++++ + + S + K ++ S+ A IA+ K +TIG++L+ P +++ S + G++ ++N I LS++T+ RRI ++++++ K R+ Sbjct: 104 LPLCVVCSEVLANEALKPTKLRRHLETKHSEYASKPVEFFENKLKEYQSRKKTLELACSGTDNAKAVEASYRVAQLIAKAGKPHTIGESLILPAAKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRE 245 HSP 2 Score: 43.1282 bits (100), Expect = 9.524e-24 Identity = 22/51 (43.14%), Postives = 38/51 (74.51%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 +I++++++ +YAIQ+DEST I+N + LL +VRYE +++I E +L C L Sbjct: 239 LIKRVRESRFYAIQLDESTDIANLSNLLAFVRYEH--NREIFEDILFCKPL 287
BLAST of SMED30022498 vs. Ensembl Cavefish
Match: ENSAMXT00000057314.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:4224188:4227217:-1 gene:ENSAMXG00000029268.1 transcript:ENSAMXT00000057314.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.0258 bits (188), Expect = 2.000e-18 Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = -1 Query: 160 KEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLK----------CSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 606 +E FIEYG I D + + C AN SLK L+RH T H GKP EFFLRK++ L A + +I++ LL+ S + IA+ KK +TIG+TL+KP + + G + K +PLSN+T+ RI ++ +E Sbjct: 9 QESFIEYGFIEAMDK--VRAECIFCRDKLANESLKPCNLKRHQTTKHPETVGKPKEFFLRKKELLVANRPQ-----NIKDSLLRAGSDHRQATIASFECSLLIAKDKKPHTIGETLIKPACIKMAERMCGPQVANKFKIVPLSNNTVKDRIDRMAGNVE 160 HSP 2 Score: 33.4982 bits (75), Expect = 2.000e-18 Identity = 14/35 (40.00%), Postives = 27/35 (77.14%), Query Frame = -3 Query: 56 SNIIQKLQKTLYYAIQMDESTHISNNAILLIYVRY 160 + +++KL KT ++IQ+DE+T ++ AIL++Y +Y Sbjct: 161 NTLVEKL-KTSPFSIQLDETTTVAEEAILIVYAQY 194
BLAST of SMED30022498 vs. Ensembl Cavefish
Match: ENSAMXT00000051860.1 (pep primary_assembly:Astyanax_mexicanus-2.0:11:8744824:8748459:-1 gene:ENSAMXG00000029953.1 transcript:ENSAMXT00000051860.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 74.7146 bits (182), Expect = 3.004e-17 Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = -1 Query: 184 PQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRI 549 P ++C ++ A SLK +KL RH H KPVEFF RK EL+ ++ +K + K LK + IA+ K +T+G+ L+ C ++ S + GK ++ IP+SNDT+ RI Sbjct: 74 PTVLVCGNMLAKVSLKLSKLLRHLQAKHSTLWSKPVEFFERKLQELRGQKLVLQK-ATANQKALKAAFVILHWIAKTGKPHTLGEPFLQ-CAKETVSIMCGKCTADRLALIPVSNDTVANRI 193 HSP 2 Score: 31.9574 bits (71), Expect = 3.004e-17 Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = -3 Query: 65 TLYYAIQMDESTHISNNAILLIY 133 ++Y+A+Q+DEST +S A LL+Y Sbjct: 201 SVYFALQLDESTDVSGEAQLLVY 223
BLAST of SMED30022498 vs. Ensembl Cavefish
Match: ENSAMXT00000047230.1 (pep primary_assembly:Astyanax_mexicanus-2.0:11:8744824:8751336:-1 gene:ENSAMXG00000029953.1 transcript:ENSAMXT00000047230.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 73.1738 bits (178), Expect = 1.839e-16 Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = -1 Query: 184 PQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRI 549 P ++C ++ A SLK +KL RH H KPVEFF RK EL+ ++ +K + K LK + IA+ K +T+G+ L+ C ++ S + GK ++ IP+SNDT+ RI Sbjct: 192 PTVLVCGNMLAKVSLKLSKLLRHLQAKHSTLWSKPVEFFERKLQELRGQKLVLQK-ATANQKALKAAFVILHWIAKTGKPHTLGEPFLQ-CAKETVSIMCGKCTADRLALIPVSNDTVANRI 311 HSP 2 Score: 30.8018 bits (68), Expect = 1.839e-16 Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = -3 Query: 65 TLYYAIQMDESTHISNNAILLIY 133 ++Y+A+Q+DEST +S A LL+Y Sbjct: 319 SVYFALQLDESTDVSGEAQLLVY 341
BLAST of SMED30022498 vs. Ensembl Medaka
Match: ENSORLT00000032459.1 (pep primary_assembly:ASM223467v1:8:14240678:14247355:1 gene:ENSORLG00000024991.1 transcript:ENSORLT00000032459.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.4413 bits (241), Expect = 6.648e-28 Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = -1 Query: 133 QYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIEAI*FKNYRK 546 Q V C +N +LK +KL+RH T H GKPV++F RK D L+ ++ S LK S+ A +A+ KKA+TI + L+ P D+C ++ G+ K+ +IPLSND + RI DI+++IE + RK Sbjct: 36 QCVECGLTLSNEALKPSKLKRHLETKHPKLIGKPVDYFKRKDDGLQMQRRSIVSLTGDAKCALKASYLVARRVAQSKKAFTIAEELVLPAAVDMCREMIGEAAAKKLKTIPLSNDIVSHRIADIASDIEQQLLERIRK 173 HSP 2 Score: 45.0542 bits (105), Expect = 6.648e-28 Identity = 18/51 (35.29%), Postives = 40/51 (78.43%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 ++++++K+ ++++Q+DEST ++N A+LL++VRY +S ++E +L C +L Sbjct: 167 LLERIRKSPFFSLQLDESTDVTNAALLLVFVRYRWDSS--LQEDILFCGEL 215
BLAST of SMED30022498 vs. Ensembl Medaka
Match: ENSORLT00000035512.1 (pep primary_assembly:ASM223467v1:11:22712371:22714941:1 gene:ENSORLG00000026495.1 transcript:ENSORLT00000035512.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 109.768 bits (273), Expect = 2.006e-27 Identity = 61/160 (38.12%), Postives = 90/160 (56.25%), Query Frame = -1 Query: 163 KAKLETNYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEI 642 KAK+ YD E ++ G V G + P ++C + A S+K NKL+RH T H + KP+EFF RKR E + S F S+ + L S+ A+ IA+CKK +TI + L+ P D+ S + AK+ ++PLSNDT+ RRI DI+N++ Sbjct: 26 KAKMR-KYD----EAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHLKTLHPNHADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELILPAALDMVSVMLDDASAAKLKTVPLSNDTVARRINDIANDL 180
BLAST of SMED30022498 vs. Ensembl Medaka
Match: ENSORLT00000040389.1 (pep primary_assembly:ASM223467v1:19:265767:268275:-1 gene:ENSORLG00000025045.1 transcript:ENSORLT00000040389.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 109.768 bits (273), Expect = 2.025e-27 Identity = 56/147 (38.10%), Postives = 84/147 (57.14%), Query Frame = -1 Query: 163 EKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEI 603 E ++ G V G + P ++C + A S+K NKL+RH T H + KP+EFF RKR E + S F S+ + L S+ A+ IA+CKK +TI + L+ P D+ S + AK+ ++PLSNDT+ RRI DI+N++ Sbjct: 34 EAYVALGFTVTTVGDEERPVCLLCLKMLAADSMKPNKLRRHLKTLHPNHADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELILPAALDMVSVMLDDASAAKLKTVPLSNDTVARRINDIANDL 180
BLAST of SMED30022498 vs. Ensembl Medaka
Match: ENSORLT00000028620.1 (pep primary_assembly:ASM223467v1:3:35179252:35181570:1 gene:ENSORLG00000028714.1 transcript:ENSORLT00000028620.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 92.4337 bits (228), Expect = 4.586e-26 Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = -1 Query: 160 GSTAKKAKLETNYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 657 S + KAK Y+ FI++G + Q V C +N +LK +KL+RH T + GKPV++F RK D L+ ++ S LK S+ A +A KKA+TI + L+ P D+C ++ G+ K+ +IPLSND + RI D++++IE Sbjct: 49 ASPSSKAKFIRKYN----PDFIKFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETKYPKLIGKPVDYFKRKDDGLQMQRRSIVSLTGDAKCALKASYLVARRVALNKKAFTIAEELVLPAAVDMCREMIGEAAAKKLKTIPLSNDIVSHRIADMASDIE 210 HSP 2 Score: 43.8986 bits (102), Expect = 4.586e-26 Identity = 18/51 (35.29%), Postives = 39/51 (76.47%), Query Frame = -3 Query: 2 IIQKLQKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 154 ++ +++K+ ++++Q+DEST ++N A+LL++VRY +S ++E +L C +L Sbjct: 213 LLGRIRKSPFFSLQLDESTDVTNAALLLVFVRYRWDSS--LQEDILFCGEL 261
BLAST of SMED30022498 vs. Ensembl Medaka
Match: ENSORLT00000030788.1 (pep primary_assembly:ASM223467v1:17:2264135:2274164:1 gene:ENSORLG00000023031.1 transcript:ENSORLT00000030788.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 88.9669 bits (219), Expect = 3.388e-22 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = -1 Query: 184 DLPQYV--ICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRI 555 D PQ + C AN+S+K LQRH T HG + GK EFF RK E K+ Q++ +K + K+L+ S+ + +A+ KK +TI + LL P + + KE ++PLSNDT+ RRI Sbjct: 21 DPPQALCFFCGEKLANASMKPAHLQRHLTTKHGCHVGKAPEFFRRKLSEFKSSQATMRKVSTTSVKVLEASYAVSLLVAKAKKPFTIAEDLLLPAAVVLAETMLDKESADTFKTVPLSNDTVCRRI 146 HSP 2 Score: 34.2686 bits (77), Expect = 3.388e-22 Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = -3 Query: 11 YAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCC 124 +++Q+DEST +S +A L+ +VRY D + DI E +L C Sbjct: 158 FSLQLDESTDVSGHAQLVAFVRYID--TDDICEHILFC 193
BLAST of SMED30022498 vs. Planmine SMEST
Match: SMESG000030287.1 (SMESG000030287.1) HSP 1 Score: 174.096 bits (440), Expect = 1.153e-51 Identity = 87/148 (58.78%), Postives = 108/148 (72.97%), Query Frame = -1 Query: 160 EKFIEYGCIVIKDGHIDLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIE 603 +K+I YG D ID PQ VIC +V AN+SLK +KL RH TNH YK KP +FFLR+R ELKA + +F K+VS + K KCS+ AA HIA+ KKAYTIG+ LLKPCM+D +++FG E+ KIN IPLSNDTI RRI DISN++E Sbjct: 78 DKYINYGFTCKNDNGIDFPQCVICGNVLANASLKPSKLLRHLETNHSEYKDKPKDFFLRERTELKADKLNFTKYVSSDKKYSKCSYLAAMHIAKSKKAYTIGEMLLKPCMKDKYNELFGPEYATKINQIPLSNDTIFRRINDISNDME 225
BLAST of SMED30022498 vs. Planmine SMEST
Match: SMESG000030106.1 (SMESG000030106.1) HSP 1 Score: 100.138 bits (248), Expect = 1.540e-26 Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = -1 Query: 193 DLPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFK-KFVSIENKL-LKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIG 555 D PQ V+C V ANS + KL+RH T H Y+ KP +F RK +ELK++++ + + EN+L LK S ++HIA+ KK +TIG+ L+ P M + C +F +F ++I +IPLSND + Sbjct: 35 DCPQCVVCSEVLANSDMAPVKLKRHLETKHLQYQSKPKDFIKRKENELKSQKTVMQYTLLGTENELALKTSFLISYHIAKSKKNFTIGENLIMPGMVEACQIMFSDKFASQIKTIPLSNDAVA 157
BLAST of SMED30022498 vs. Planmine SMEST
Match: SMESG000015406.1 (SMESG000015406.1) HSP 1 Score: 92.0485 bits (227), Expect = 1.142e-24 Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = -1 Query: 157 GHID---LPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIENKLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISNEIEA 564 G ID +PQ V+C + NS++ K++RH T H +K K V+FF+ K DE+ K + + S+ ++ IA +A+TIG+TL+KPC DI IF ++ +I +PLSNDT+ R+I D+++ I++ Sbjct: 133 GFIDANNVPQCVLCSKMFPNSAMVPAKMRRHLETIHPEFKHKQVDFFILKSDEINEKAT-------------EASYIVSYRIALAGEAHTIGETLIKPCAVDIAKCIFDEKSAKEITDVPLSNDTVARQIKDLASNIKS 258 HSP 2 Score: 38.891 bits (89), Expect = 1.142e-24 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = -3 Query: 2 SNIIQKL---QKTLYYAIQMDESTHISNNAILLIYVRYEDYASKDIEEKLLCCLKL 160 SNI KL K +++QMDEST I+ AILL++VRY+ + EE LL C L Sbjct: 254 SNIKSKLIFRLKNSNFSLQMDESTDIAGLAILLVFVRYQ--HTNLFEEDLLLCEPL 307
BLAST of SMED30022498 vs. Planmine SMEST
Match: SMESG000079121.1 (SMESG000079121.1) HSP 1 Score: 98.2117 bits (243), Expect = 1.699e-23 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = -1 Query: 169 GHID---LPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIEN-KLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISN 564 G ID +PQ V+C NS++ K+ H T H +K K V+FF+RKRDEL QS N K + S+ ++ IA +A+TIG+TL+KPC DI IF ++ +I +PLSNDTI RRI D+++ Sbjct: 67 GFIDANNVPQCVLCSKSFPNSAMVPAKVCHHLETIHPEFKHKQVDFFIRKRDELLKSQSLIVSIFKTRNEKATEASYIVSYRIALAGEAHTIGETLIKPCAVDIAKCIFDEKSAKEITDVPLSNDTIARRIKDLAD 202
BLAST of SMED30022498 vs. Planmine SMEST
Match: SMESG000079121.1 (SMESG000079121.1) HSP 1 Score: 98.2117 bits (243), Expect = 1.750e-23 Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = -1 Query: 169 GHID---LPQYVICESVSANSSLKANKLQRHFHTNHGPYKGKPVEFFLRKRDELKAKQSSFKKFVSIEN-KLLKCSHTAAFHIARCKKAYTIGKTLLKPCMEDICSDIFGKEFEAKINSIPLSNDTIGRRIIDISN 564 G ID +PQ V+C NS++ K+ H T H +K K V+FF+RKRDEL QS N K + S+ ++ IA +A+TIG+TL+KPC DI IF ++ +I +PLSNDTI RRI D+++ Sbjct: 67 GFIDANNVPQCVLCSKSFPNSAMVPAKVCHHLETIHPEFKHKQVDFFIRKRDELLKSQSLIVSIFKTRNEKATEASYIVSYRIALAGEAHTIGETLIKPCAVDIAKCIFDEKSAKEITDVPLSNDTIARRIKDLAD 202 The following BLAST results are available for this feature:
BLAST of SMED30022498 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30022498 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30022498 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30022498 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30022498 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of SMED30022498 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of SMED30022498 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30022498 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30022498 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30022498 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30022498 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30022498 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30022498 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30022498 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022498 ID=SMED30022498|Name=SMED30022498|organism=Schmidtea mediterranea sexual|type=transcript|length=663bpback to top protein sequence of SMED30022498-orf-1 >SMED30022498-orf-1 ID=SMED30022498-orf-1|Name=SMED30022498-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=171bp ASGSTAKKAKLETNYDYCDKEKFIEYGCIVIKDGHIDLPQYVICESVSANback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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