G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30022441
Length (bp)1468
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30022441) t-SNE clustered cells

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30022441) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30022441) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30022441) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022441

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30022441SMESG000044466.1 dd_Smed_v4_11997_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022441SMESG000044466.1 dd_Smed_v4_11997_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30022441SMESG000044466.1 dd_Smed_v4_11997_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30022441SMESG000044466.1 dd_Smed_v4_11997_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30022441SMESG000044466.1 dd_Smed_v4_11997_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30022441SMESG000044466.1 dd_Smed_v6_11997_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Match: frpr-8 (FMRFamide Peptide Receptor family [Source:UniProtKB/TrEMBL;Acc:Q20686])

HSP 1 Score: 48.9062 bits (115), Expect = 5.954e-6
Identity = 37/149 (24.83%), Postives = 71/149 (47.65%), Query Frame = 3 
Query:  177 FYIQIP-ICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAV-----TLILRASQG--LLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFF 599
            + + IP IC++G    V+ ++VF +    SSL   ++ L++ D +      LI    QG  L G     +C       + +        P++NI +  S W  +++ ++RFLA+ +   SK++CT +    +   I + +++   P FF
Sbjct:   47 YLLAIPTICVLGAGAAVMCIVVFTRKQMRSSLNVYLAGLSVFDLILLSFSALIFSPLQGCVLQGHGDTAVC-------HFFWRSTPWTLPISNIAQCGSVWTCVAVTVDRFLAVNYPLHSKIWCTPRRATTILIAITVFSILFKAPMFF 188
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Match: SPR (gene:FBgn0029768 transcript:FBtr0344824)

HSP 1 Score: 51.2174 bits (121), Expect = 1.247e-6
Identity = 42/148 (28.38%), Postives = 71/148 (47.97%), Query Frame = 3 
Query:  201 LIGFCL----------NVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGL-----LGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFF 599
            L G+C+          N + V+V  K    +   F++  +A+ D +T+I  A  GL      G    PL        Y     IF E  +  +  TIS WLTL+LA++R++ + H   ++ +CT+   +  T++I ++A +  LP FF
Sbjct:   91 LYGYCMPFLLIITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAP-GLWYMYTFGNHYKPLHPVSMCLAYS----IFNEI-MPAMCHTISVWLTLALAVQRYIYVCHAPMARTWCTMPRVRRCTAYIALLAFLHQLPRFF 232
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Match: SPR (gene:FBgn0029768 transcript:FBtr0339781)

HSP 1 Score: 51.2174 bits (121), Expect = 1.247e-6
Identity = 42/148 (28.38%), Postives = 71/148 (47.97%), Query Frame = 3 
Query:  201 LIGFCL----------NVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGL-----LGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFF 599
            L G+C+          N + V+V  K    +   F++  +A+ D +T+I  A  GL      G    PL        Y     IF E  +  +  TIS WLTL+LA++R++ + H   ++ +CT+   +  T++I ++A +  LP FF
Sbjct:   91 LYGYCMPFLLIITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAP-GLWYMYTFGNHYKPLHPVSMCLAYS----IFNEI-MPAMCHTISVWLTLALAVQRYIYVCHAPMARTWCTMPRVRRCTAYIALLAFLHQLPRFF 232
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Match: SPR (gene:FBgn0029768 transcript:FBtr0070778)

HSP 1 Score: 51.2174 bits (121), Expect = 1.247e-6
Identity = 42/148 (28.38%), Postives = 71/148 (47.97%), Query Frame = 3 
Query:  201 LIGFCL----------NVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGL-----LGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFF 599
            L G+C+          N + V+V  K    +   F++  +A+ D +T+I  A  GL      G    PL        Y     IF E  +  +  TIS WLTL+LA++R++ + H   ++ +CT+   +  T++I ++A +  LP FF
Sbjct:   91 LYGYCMPFLLIITIISNSLIVLVLSKKSMATPTNFVLMGMAICDMLTVIFPAP-GLWYMYTFGNHYKPLHPVSMCLAYS----IFNEI-MPAMCHTISVWLTLALAVQRYIYVCHAPMARTWCTMPRVRRCTAYIALLAFLHQLPRFF 232
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Match: MsR1 (gene:FBgn0035331 transcript:FBtr0330187)

HSP 1 Score: 49.2914 bits (116), Expect = 5.690e-6
Identity = 39/171 (22.81%), Postives = 78/171 (45.61%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLC--------SSPQLRMYVYMFVIFLEFPV--TNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAI 662
            Y+ + +C++G   N +N+IV  +    S    +++ LA+AD   ++          E  P          S P+     Y +  F++F      +  TIS WLT++LA+ R++A+ +   ++V+C ++   I  +   ++ +++  P  +    I   EY +   M  K I
Sbjct:   30 YVSLVVCILGTIANTLNIIVLTRREMRSPTNAILTGLAVADLAVML----------EYIPYTIHDYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWLTVTLAVWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAI--TEYVDQLDMNGKVI 188
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Match: FMRFaR (gene:FBgn0035385 transcript:FBtr0340706)

HSP 1 Score: 48.9062 bits (115), Expect = 8.433e-6
Identity = 39/150 (26.00%), Postives = 71/150 (47.33%), Query Frame = 3 
Query:  195 ICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLG-KECWPLCSSP-QLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNND 638
            + ++G   N++++I+  +    SS+ +L++ LA  D V +I   S  L G    +P          YVY F+    FP+  I +T S ++T ++ +ER++A+ H   ++  CT    KI        +L  N+P F+    +   E   D
Sbjct:  123 VGVLGILGNIISMIILSRPQMRSSINYLLTGLARCDTVLII--TSILLFGIPSIYPYTGHFFGYYNYVYPFISPAVFPIGMIAQTASIYMTFTVTLERYVAVCHPLKARALCTYGRAKIYFIVCVCFSLAYNMPRFWEVLTVTYPEPGKD 270
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3X330 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS7715 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.237e-48
Identity = 128/347 (36.89%), Postives = 195/347 (56.20%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSS-LYFLVSSLALADAVTLILRASQGLL---GKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAI-------EKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            Y+Q  ICLIGF LN++N  VF +    S+  Y LV +L++ADA+TL LR  QGL    G        +  + +Y Y++  + E P+TN+TE +S WLT+ LA+ER++AM+H +F++ YCT +N K L   I ++++  NLPYF  + +  ++  N   +     + TN +    SQ Y V+SW R + VQ +PL+ LC+ N LL  IVY HN+K+      G N+++                 +  +KE +          +KK  AQ+KL ILLI +ILLFL G IP +F+YI+I++A     +       Y ++R  T  + L+ Y L FF+Y FLN HFR+ +
Sbjct:   34 YVQPCICLIGFILNIINSYVFQRKTFCSTPAYMLVLALSIADAITLGLRIPQGLTYYRGSSS----VTQTMAIYAYIYATYAEVPITNMTENMSAWLTVCLALERYVAMRHWNFTRQYCTRQNTKRLIVGIALVSVFFNLPYFMIHRIEFRRFTNGSMR-----VVTNPTALRRSQFYTVYSWFRMIAVQIIPLVFLCILNVLLITIVYQHNKKI------GKNTVMKGKDNRLSLCTEGSGAEEASLKETTVGDSRSTQRRQKKRNAQRKLNILLIAIILLFLFGAIPQAFSYIRIFEAFGTCKEAFHYCPTYVIYRMVTTNIALISYGLTFFLYFFLNRHFRNEL 365
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A068WK46 (G protein coupled receptor OS=Echinococcus granulosus OX=6210 GN=EgrG_000234800 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.311e-46
Identity = 130/347 (37.46%), Postives = 199/347 (57.35%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSS-LYFLVSSLALADAVTLILRASQGLL---GKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLF----VTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSK---FDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            Y+Q  ICLIGF LN++N+ VF +    S+  Y LV +L++ADA+TL LR  QGL    G        +  + +Y Y++  + E P+TN+TE +S WLT+ LA+ER++AM+H +F++ Y T +N K L   I +++++ NLPYF  + +  K+  N   +     + TN +    S  Y V+SW R  IVQ +PL+ LC+ N LL  IVY HN+K      V  +    S+  + T   +  +   ++    + ++    +KK  AQ+KL ILLI VILLFL G IP +F+YI+I++A     +   + P    YRM  T+   + L+ Y L FF+Y FLN HFR+ +
Sbjct:   42 YVQPCICLIGFILNIINIYVFQRKTFCSTPAYMLVLALSIADAITLGLRIPQGLTYYRGSSS----VTQTMAIYAYIYATYAEVPITNMTENMSAWLTVCLALERYVAMRHWNFARQYSTRQNTKRLIISIALVSVLFNLPYFMIHRIEFKRFANGSMR-----VITNATALRRSTFYTVYSWFRMTIVQIIPLVFLCILNVLLITIVYQHNKKFGKNTEVEQKSNHLSLGTEGTGADETSLKDTTVGDLQLIQRR---QKKRNAQRKLNILLIAVILLFLFGAIPQAFSYIRIFEAFGTCEEAFHYCPTYVVYRMVTTN---IALISYGLTFFLYFFLNQHFRNEL 373
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: W6UXS1 (Putative G-protein coupled receptor OS=Echinococcus granulosus OX=6210 GN=EGR_01868 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.716e-46
Identity = 130/347 (37.46%), Postives = 199/347 (57.35%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSS-LYFLVSSLALADAVTLILRASQGLL---GKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLF----VTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSK---FDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            Y+Q  ICLIGF LN++N+ VF +    S+  Y LV +L++ADA+TL LR  QGL    G        +  + +Y Y++  + E P+TN+TE +S WLT+ LA+ER++AM+H +F++ Y T +N K L   I +++++ NLPYF  + +  K+  N   +     + TN +    S  Y V+SW R  IVQ +PL+ LC+ N LL  IVY HN+K      V  +    S+  + T   +  +   ++    + ++    +KK  AQ+KL ILLI VILLFL G IP +F+YI+I++A     +   + P    YRM  T+   + L+ Y L FF+Y FLN HFR+ +
Sbjct:   34 YVQPCICLIGFILNIINIYVFQRKTFCSTPAYMLVLALSIADAITLGLRIPQGLTYYRGSSS----VTQTMAIYAYIYATYAEVPITNMTENMSAWLTVCLALERYVAMRHWNFARQYSTRQNTKRLIISIALVSVLFNLPYFMIHRIEFKRFANGSMR-----VITNATALRRSTFYTVYSWFRMTIVQIIPLVFLCILNVLLITIVYQHNKKFGKNTEVEQKSNHLSLGTEGTGADETSLKDTTVGDLQLIQRR---QKKRNAQRKLNILLIAVILLFLFGAIPQAFSYIRIFEAFGTCEEAFHYCPTYVVYRMVTTN---IALISYGLTFFLYFFLNQHFRNEL 365
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A087W1C0 (G protein coupled receptor OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000234800 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.190e-45
Identity = 129/347 (37.18%), Postives = 198/347 (57.06%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSS-LYFLVSSLALADAVTLILRASQGLL---GKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLF----VTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSK---FDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            Y+Q  ICLIGF LN++N+ VF +    S+  Y LV +L++ADA+TL LR  QGL    G        +  + +Y Y++  + E P+TN+TE +S WLT+ LA+ER++AM+H +F++ Y T +  K L   I +++++ NLPYF  + +  K+  N   +     + TN +    S  Y V+SW R  IVQ +PL+ LC+ N LL  IVY HN+K      V  +    S+  + T   +  +   ++    + ++    +KK  AQ+KL ILLI VILLFL G IP +F+YI+I++A     +   + P    YRM  T+   + L+ Y L FF+Y FLN HFR+ +
Sbjct:   42 YVQPCICLIGFILNIINIYVFQRKTFCSTPAYMLVLALSIADAITLGLRIPQGLTYYRGSSS----VTQTMAIYAYIYATYAEVPITNMTENMSAWLTVCLALERYVAMRHWNFARQYSTRQITKRLIISIALVSVLFNLPYFMIHRIEFKRFANGSMR-----VITNATALRRSTFYTVYSWFRMTIVQIIPLVFLCILNVLLITIVYQHNKKFGKNTEVEQKGNHLSLGTEGTGADETSLKDTTVGDSQLIQRR---QKKRNAQRKLNILLIAVILLFLFGAIPQAFSYIRIFEAFGTCEEAFHYCPTYVVYRMVTTN---IALISYGLTFFLYFFLNRHFRNEL 373
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3W7Y4 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS6427 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 3.000e-44
Identity = 127/350 (36.29%), Postives = 194/350 (55.43%), Query Frame = 3 
Query:  180 YIQIPICLIGFCLNVVNVIVFYKNIHHSS-LYFLVSSLALADAVTLILRASQGLL---GKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRL-ISKPSLSKHPIKEKSTAI---------EKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            Y+Q  IC +GF LN++N  VF +    S+  Y LV +L++ADA+TL LR  QGL    G        +  + +Y Y++  + E P+TN+TE +S WLT+ LA+ER++AM+H +F++ Y T +N K L   I ++++  NLPYF  + +  ++  N   +     + TN +    SQ Y V+SW R   VQ +PL+ LC+ N LL  IVY HN+K       G N+   +  ++  RL +         +  K T +         +KK  AQ+KL ILLI +ILLFL G IP +F+YI+I++A     +       Y ++R  T  + L+ Y L FF+Y FLN HFR+ +
Sbjct:   34 YVQPCICFVGFILNIINSYVFQRRTFSSTPAYMLVLALSIADAITLGLRIPQGLTYYRGSSS----VTQTMAIYAYIYATYAEVPITNMTENMSAWLTVCLALERYVAMRHWNFTRQYSTRQNTKRLIISIALVSVFFNLPYFMIHRIEFRRFANGSMR-----VITNTTALRRSQFYTVYSWFRMTTVQIIPLVFLCILNVLLITIVYQHNKKF------GKNT---EMEQKGNRLSLGAEGSGAEELSLKDTTMGDSWLTQRRQKKRNAQRKLNILLIAIILLFLFGAIPQAFSYIRIFEAFGTCKEAFHYCPTYVIYRMVTTNIALISYGLTFFLYFFLNRHFRNEL 365
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000044466.1 (SMESG000044466.1)

HSP 1 Score: 731.865 bits (1888), Expect = 0.000e+0
Identity = 391/396 (98.74%), Postives = 395/396 (99.75%), Query Frame = 3 
Query:  108 TINHMSSTEEIAAFNNSILLFLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSVCCVNNQSKVSANKNGMEFKMKHQKLQEKENTVQQVL 1295
             ++HMSSTEEIAAFNNSILLFLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNN+SQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQFLPLLLLCVFNFLLFQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKLTILLITVILLFLIGQIPHSFAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSVCCVNNQ+KVSANKNGMEFKMKHQKLQEKENTVQQVL
Sbjct:    7 ALSHMSSTEEIAAFNNSILLFLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNESQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQFLPLLLLCVFNFLLFQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKLTILLITVILLFLIGQIPHSFAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSVCCVNNQAKVSANKNGMEFKMKHQKLQEKENTVQQVL 402
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000035759.1 (SMESG000035759.1)

HSP 1 Score: 208.764 bits (530), Expect = 1.864e-62
Identity = 151/369 (40.92%), Postives = 222/369 (60.16%), Query Frame = 3 
Query:  114 NHMSSTEEIAAFNNSILLFLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRC----------GTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVS--KYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHS 1184
            N  + T E    +  ++ FL  Y Q PIC+IG  LN +N +V  +    ++ Y L+S+LA  DA TL+LR  Q  +  E  P C  P L+  +Y+FV++ E P+TNITE +S W+TL+LA+E ++ MK  + S++YCT++N K L   +  ++ ++NLP+FF     +K E N  +Q     +Y  +  F  S  Y +HSW+R  IVQ  PLLLLCVFN LLF  VY  NR  F + R             NSI   + + S    S PS     ++ + + I KK +AQ KLTILLI +I+LFLIGQIPH+FAY+ I++  S  K   +  +  ++ ++R+ TM+LTL CYSLNFF+Y+FLN+H+++S
Sbjct:    3 NFSNLTPENGTNHEPLIDFLLIYFQFPICIIGSILNFINFLVLTRIGISNATYILMSALAFTDASTLLLRTVQTYVRCETLPFCEMPNLKYKLYIFVLYAEVPITNITENLSCWITLALAVEHYIQMKFFTKSRLYCTVENSKKLIFLLTFLSTLVNLPFFFLMTTSVKYETNQRNQSIP-VVYAKKRQFMDSIFYPIHSWLRFCIVQMFPLLLLCVFNGLLFSTVYKRNRNYFNSNRQYFKTLRKWSKDLNSIKAQAIEHSSGQCSSPS---PKLETRMSLISKKQKAQYKLTILLIVIIILFLIGQIPHAFAYVGIHRFFSNCKDLTYLKDCPKHELYRSVTMILTLACYSLNFFVYIFLNSHYQNS 367
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000051347.1 (SMESG000051347.1)

HSP 1 Score: 196.823 bits (499), Expect = 1.945e-57
Identity = 131/345 (37.97%), Postives = 214/345 (62.03%), Query Frame = 3 
Query:  168 FLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKL--FVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYS---KFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSV 1187
            FL  Y+Q P+CLIGF LN++N  +F +    ++ Y L+ +++L D++TLI R S+ ++       C +P L+M +Y+F +F+E P+TNITE+ISNW  ++LA ER++AM +++ SK Y T+ N K+   F+ ++++++N P+F+   V+++ E     Q     IY++ S  +LS+ Y  H+W R  IV+ +PLL LCV NFLL  +V+ H +KL  F + R G       +TK++ ++                  ++K RAQ KLT+LLI VI+LFLIGQIP SF+Y+K+Y+ +       K+  +   Y+++ + + +L + CY  NFF+YL LN HFR+S+
Sbjct:   13 FLDVYVQAPLCLIGFILNLINFSIFAQKKFSAAPYVLLMAMSLVDSITLIFRISEAVVKCTSLSFCRNPYLQMVMYLFAVFIEVPITNITESISNWTAVALATERYIAMCYYNLSKQYSTVYNAKLFLLFVTLLSIVLNSPFFYINYVVIEWENTTSHQGMVPVIYSSFSSLALSKFYTFHTWFRPFIVKVIPLLFLCVCNFLLLALVWEHKKKLKQFQSKRSG-----YLNTKDNNKI-----------------TQRKQRAQNKLTMLLIVVIVLFLIGQIPVSFSYLKVYENLPNRCNAYKYLTDCPNYKVYSSVSHLLMITCYCTNFFVYLALNNHFRNSL 335
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000035759.1 (SMESG000035759.1)

HSP 1 Score: 182.956 bits (463), Expect = 2.476e-53
Identity = 133/314 (42.36%), Postives = 194/314 (61.78%), Query Frame = 3 
Query:  279 VSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRC----------GTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVS--KYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHS 1184
            +S+LA  DA TL+LR  Q  +  E  P C  P L+  +Y+FV++ E P+TNITE +S W+TL+LA+E ++ MK  + S++YCT++N K L   +  ++ ++NLP+FF     +K E N  +Q     +Y  +  F  S  Y +HSW+R  IVQ  PLLLLCVFN LLF  VY  NR  F + R             NSI   + + S    S PS     ++ + + I KK +AQ KLTILLI +I+LFLIGQIPH+FAY+ I++  S  K   +  +  ++ ++R+ TM+LTL CYSLNFF+Y+FLN+H+++S
Sbjct:    1 MSALAFTDASTLLLRTVQTYVRCETLPFCEMPNLKYKLYIFVLYAEVPITNITENLSCWITLALAVEHYIQMKFFTKSRLYCTVENSKKLIFLLTFLSTLVNLPFFFLMTTSVKYETNQRNQSIP-VVYAKKRQFMDSIFYPIHSWLRFCIVQMFPLLLLCVFNGLLFSTVYKRNRNYFNSNRQYFKTLRKWSKDLNSIKAQAIEHSSGQCSSPS---PKLETRMSLISKKQKAQYKLTILLIVIIILFLIGQIPHAFAYVGIHRFFSNCKDLTYLKDCPKHELYRSVTMILTLACYSLNFFVYIFLNSHYQNS 310
[Close]
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000068527.1 (SMESG000068527.1)

HSP 1 Score: 186.037 bits (471), Expect = 6.430e-53
Identity = 131/343 (38.19%), Postives = 210/343 (61.22%), Query Frame = 3 
Query:  168 FLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSLYFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEFPVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICIIALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWIRQVIVQXXXXXXXXXXXXXXXQIVYNHNRKLFVTPRCGTNSIIIDSTKESQRLISKPSLSKHPIKEKSTAIEKKLRAQKKXXXXXXXXXXXXXXGQIPHSFAYIKIYKAVSKYSKFDP--EGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNTHFRHSVC 1190
             L  ++Q PIC++GF LN++N  VF K  + ++ Y L+S+L+LADAVTL+L  ++ +   +    C  P L++  Y+F ++++ P++NITETIS+ +T++LA ER+LAM+H++F K+Y T+KN ++    I + + + N P+FFT  + +  E    ++     +Y+N +    S  Y  HSW R + +Q LPLL LC+ N LL  ++ +HN++L       T+  I    + +  ++ +  +S      +S+  E+K  AQ KLTILL  +I L+LIGQIP + AYIKIY+       F+   E   Y M+RT T ++ L  Y+LNFF+Y FLN+HFR S+C
Sbjct:   16 LLVVFLQGPICIVGFGLNIINFSVFVKRKYFAAPYVLLSALSLADAVTLLLYFTETMAKCQHLAFCKQPYLQLSAYVFALYVKNPLSNITETISSIITVALATERYLAMRHYNFRKIYFTVKNTRLFVLLISVFSTLFNTPFFFTTTIKISWENETSTKQKVPVVYSNYTSLIDSYFYSTHSWTRAIAIQMLPLLYLCICNSLLLALICHHNKRL---DSIRTSYSISTDCRSTSHMVCESPMSNQ--TNQSSIRERKQIAQTKLTILLSIIIFLYLIGQIPSALAYIKIYRKFHSCDNFEVIHECPSYDMYRTVTSIMMLASYALNFFVYFFLNSHFRKSLC 353
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
frpr-85.954e-624.83FMRFamide Peptide Receptor family [Source:UniProt... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SPR1.247e-628.38gene:FBgn0029768 transcript:FBtr0344824[more]
SPR1.247e-628.38gene:FBgn0029768 transcript:FBtr0339781[more]
SPR1.247e-628.38gene:FBgn0029768 transcript:FBtr0070778[more]
MsR15.690e-622.81gene:FBgn0035331 transcript:FBtr0330187[more]
FMRFaR8.433e-626.00gene:FBgn0035385 transcript:FBtr0340706[more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3X3305.237e-4836.89G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A068WK462.311e-4637.46G protein coupled receptor OS=Echinococcus granulo... [more]
W6UXS12.716e-4637.46Putative G-protein coupled receptor OS=Echinococcu... [more]
A0A087W1C04.190e-4537.18G protein coupled receptor OS=Echinococcus multilo... [more]
A0A0R3W7Y43.000e-4436.29G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000044466.10.000e+098.74SMESG000044466.1[more]
SMESG000035759.11.864e-6240.92SMESG000035759.1[more]
SMESG000051347.11.945e-5737.97SMESG000051347.1[more]
SMESG000035759.12.476e-5342.36SMESG000035759.1[more]
SMESG000068527.16.430e-5338.19SMESG000068527.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022441 ID=SMED30022441|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1468bp
GTGGCTTATGATTCGATTTGCGATGAAACTCAGTGGGAAAGACGCGCGAG
AAATAAATATTTTGCAATTAACATTCGTACATATTCGTCAATGGCTTTCA
TCCAATCACAATCAACCATATGAGTTCTACTGAAGAAATCGCTGCATTTA
ATAATTCAATTCTTTTATTTTTATCATTTTACATTCAAATTCCAATTTGT
TTGATTGGATTTTGTTTAAATGTAGTGAATGTGATTGTGTTCTATAAAAA
CATTCATCACAGTTCTCTTTATTTTCTCGTATCATCTTTGGCATTGGCAG
ACGCGGTCACATTAATTCTCAGAGCTTCTCAAGGATTGTTGGGAAAGGAA
TGCTGGCCATTGTGTTCGAGTCCACAGCTTCGGATGTACGTCTATATGTT
CGTTATATTTCTGGAATTTCCTGTGACAAATATTACAGAAACTATATCAA
ATTGGCTAACATTGTCTTTGGCCATTGAACGTTTCTTAGCAATGAAGCAT
CATTCTTTTTCTAAGGTTTATTGTACGCTGAAAAATTTCAAAATCCTAAC
ATCATTCATTTGCATAATTGCACTCATCATAAACCTCCCATACTTTTTTA
CTTACAATGTAATTTTAAAAAAAGAATACAACAACGATTCGCAAATGTAT
GAAAAGGCAATTTACACAAATGAAAGTCATTTTTCTCTTTCCCAGATTTA
TGAAGTCCACTCATGGATCCGGCAGGTTATCGTTCAATTTCTACCTCTTT
TACTGTTGTGTGTTTTCAATTTTCTTCTTTTCCAAATTGTTTACAATCAT
AATCGAAAGTTGTTCGTCACTCCTAGATGTGGAACAAACTCGATCATAAT
AGACAGCACCAAAGAAAGCCAGAGACTGATCTCAAAACCCTCGCTGAGTA
AGCACCCGATCAAAGAGAAATCCACAGCCATTGAAAAGAAATTGAGAGCG
CAAAAAAAACTGACAATTTTATTAATAACCGTCATTTTATTATTTCTTAT
TGGACAGATTCCGCATTCATTCGCATACATAAAAATCTACAAGGCCGTTA
GTAAATATAGCAAATTTGATCCAGAAGGGTTTGAGTACCGAATGTTTAGA
ACTTCCACAATGGTTCTCACTCTGCTCTGTTATTCTCTGAACTTTTTCAT
TTATCTTTTTCTCAATACGCATTTTCGACACTCCGTTTGTTGTGTGAATA
ATCAGTCAAAAGTTTCTGCAAACAAAAATGGAATGGAATTCAAAATGAAG
CATCAAAAGCTTCAGGAAAAAGAAAATACAGTACAACAGGTATTGTAGGG
CCGTGGAAGTTGTCAGTTATGGAGGAAATGAGGGGGGAATGTTTTGATTT
AATTGAATTAATTATGAATAATGTTTGATTGATTAGCATCGCTTTGAACA
AATGAAAAAGATTTAAAAAAGAGGCAGCTTCATATCAATACTTTGATTGT
TGTGTTATTATCATTGAG
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protein sequence of SMED30022441-orf-1

>SMED30022441-orf-1 ID=SMED30022441-orf-1|Name=SMED30022441-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=393bp
MSSTEEIAAFNNSILLFLSFYIQIPICLIGFCLNVVNVIVFYKNIHHSSL
YFLVSSLALADAVTLILRASQGLLGKECWPLCSSPQLRMYVYMFVIFLEF
PVTNITETISNWLTLSLAIERFLAMKHHSFSKVYCTLKNFKILTSFICII
ALIINLPYFFTYNVILKKEYNNDSQMYEKAIYTNESHFSLSQIYEVHSWI
RQVIVQFLPLLLLCVFNFLLFQIVYNHNRKLFVTPRCGTNSIIIDSTKES
QRLISKPSLSKHPIKEKSTAIEKKLRAQKKLTILLITVILLFLIGQIPHS
FAYIKIYKAVSKYSKFDPEGFEYRMFRTSTMVLTLLCYSLNFFIYLFLNT
HFRHSVCCVNNQSKVSANKNGMEFKMKHQKLQEKENTVQQVL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: molecular function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0008528G-protein coupled peptide receptor activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 327..353
score: 25.29
coord: 50..71
score: 22.81
coord: 103..125
score: 19.69
coord: 281..305
score: 18.34
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 35..338
e-value: 3.1E-12
score: 46.4
NoneNo IPR availablePANTHERPTHR46641FAMILY NOT NAMEDcoord: 13..381
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 21..356
e-value: 4.94709E-35
score: 128.905
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 11..357
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 199..221
NoneNo IPR availableTMHMMTMhelixcoord: 326..348
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 281..303
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 33..345
score: 16.981