GRB2 associated binding protein-1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022438 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of GRB2 associated binding protein-1 vs. TrEMBL
Match: I1ZIF9 (GRB2 associated binding protein-1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.902e-17 Identity = 56/144 (38.89%), Postives = 77/144 (53.47%), Query Frame = 3 Query: 81 RKNSQKIKPQSKICYPLNTNHYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAI 512 R ++ K K YPL+ YEI K+GYL+KSPPL F K+++RYFI++ N+I+FDYF +H P G+IDL Q T I V IE N + IET NGS R YYLT + + +++W+ I Sbjct: 6 RSSTTKQKLSVDRIYPLDPADYEIHKQGYLIKSPPLKKVRRSSLPIFQAKYRKRYFIIH-TNNTNNKIYFDYFCKHEDLKYPKGSIDLNQITKISHPVHIEDQNRLLIETD----NGS-NRREYYLTSVNN-DEDEMQSWIYHI 142
BLAST of GRB2 associated binding protein-1 vs. TrEMBL
Match: A0A4E0RYK4 (PH domain-containing protein OS=Fasciola hepatica OX=6192 GN=D915_005329 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 2.606e-6 Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFL--------------KKWKRRYFILYRAK-EYENEIFFDYFKRHHLTHIP-TGTIDLMQCTNIKMNVKIEK-SNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIV 515 +++ EG L KSPP N D FL K+W++R+ +LY+ + + E++FDY+K +TH G +DL C I NV+I K SN +I+T + + R+YY Q + W+ ++V Sbjct: 14 QVLMEGLLTKSPP-NQDNGSHSGNFLRDLHCMGFTPPFMRKRWRQRHCVLYKVRGGKKTEVYFDYYK--DVTHTKLKGRVDLRNCECIVDNVEIGKWSNVFSIQTMHKD-----RSRVYYFAAET---QELMAKWVNSLV 142
BLAST of GRB2 associated binding protein-1 vs. TrEMBL
Match: A0A5K4F2S9 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.923e-6 Identity = 42/120 (35.00%), Postives = 61/120 (50.83%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRA-KEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWL 503 ++I GYL+KS + ++ WKRRYFILY+ + + EIFFDY+K +T G +DL C I NV I + A +I T FNG+ RIYY + + + W+ Sbjct: 12 DVIICGYLMKSRRI----ELLRKLLWNDWKRRYFILYKVHSQNKTEIFFDYYKDETVTKFK-GRVDLEHCECIVENVNIGQPCAFSISTL---FNGN--KRIYYFIA---ANNKIMSDWV 118
BLAST of GRB2 associated binding protein-1 vs. Ensembl Medaka
Match: gab1 (GRB2 associated binding protein 1 [Source:NCBI gene;Acc:101173122]) HSP 1 Score: 46.595 bits (109), Expect = 8.861e-6 Identity = 30/104 (28.85%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYL 458 E++ EG+L KSPP E +++ WK+R+F+L + + +Y+K H T P IDL C + + K + +E ++ F+ DR++YL Sbjct: 5 EVVCEGWLRKSPP----EKKLRR---YAWKKRWFVLRSGRLTGDPDVLEYYKNDH-TKKPIRVIDLNLCEQVDAGLTFSKKD---LEHSFI-FDIKTIDRVFYL 96
BLAST of GRB2 associated binding protein-1 vs. Ensembl Medaka
Match: gab1 (GRB2 associated binding protein 1 [Source:NCBI gene;Acc:101173122]) HSP 1 Score: 46.595 bits (109), Expect = 8.982e-6 Identity = 30/104 (28.85%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYL 458 E++ EG+L KSPP E +++ WK+R+F+L + + +Y+K H T P IDL C + + K + +E ++ F+ DR++YL Sbjct: 5 EVVCEGWLRKSPP----EKKLRR---YAWKKRWFVLRSGRLTGDPDVLEYYKNDH-TKKPIRVIDLNLCEQVDAGLTFSKKD---LEHSFI-FDIKTIDRVFYL 96
BLAST of GRB2 associated binding protein-1 vs. Ensembl Medaka
Match: gab1 (GRB2 associated binding protein 1 [Source:NCBI gene;Acc:101173122]) HSP 1 Score: 46.595 bits (109), Expect = 9.089e-6 Identity = 30/104 (28.85%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYL 458 E++ EG+L KSPP E +++ WK+R+F+L + + +Y+K H T P IDL C + + K + +E ++ F+ DR++YL Sbjct: 5 EVVCEGWLRKSPP----EKKLRR---YAWKKRWFVLRSGRLTGDPDVLEYYKNDH-TKKPIRVIDLNLCEQVDAGLTFSKKD---LEHSFI-FDIKTIDRVFYL 96
BLAST of GRB2 associated binding protein-1 vs. Ensembl Medaka
Match: gab1 (GRB2 associated binding protein 1 [Source:NCBI gene;Acc:101173122]) HSP 1 Score: 46.2098 bits (108), Expect = 9.907e-6 Identity = 30/104 (28.85%), Postives = 52/104 (50.00%), Query Frame = 3 Query: 147 EIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYL 458 E++ EG+L KSPP E +++ WK+R+F+L + + +Y+K H T P IDL C + + K + +E ++ F+ DR++YL Sbjct: 5 EVVCEGWLRKSPP----EKKLRR---YAWKKRWFVLRSGRLTGDPDVLEYYKNDH-TKKPIRVIDLNLCEQVDAGLTFSKKD---LEHSFI-FDIKTIDRVFYL 96
BLAST of GRB2 associated binding protein-1 vs. Planmine SMEST
Match: SMESG000035904.1 (SMESG000035904.1) HSP 1 Score: 345.125 bits (884), Expect = 4.713e-123 Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 3 Query: 45 MTEINIKGEQYVRKNSQKIKPQSKICYPLNTNHYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIVNALNMYKIK 542 MTEINIKGEQYVRKNSQKIKPQSKICYPLNT+HYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIVNALNMYKIK Sbjct: 1 MTEINIKGEQYVRKNSQKIKPQSKICYPLNTDHYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIVNALNMYKIK 166
BLAST of GRB2 associated binding protein-1 vs. Planmine SMEST
Match: SMESG000074673.1 (SMESG000074673.1) HSP 1 Score: 85.5001 bits (210), Expect = 4.836e-21 Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 120 CYPLNTNHYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPTGTIDLMQCTNIKMNVKIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWL 503 YPL+ YEI K+GYL+KSPPL N F K+++RYFI++ ++I+FDYF +H P G+IDL Q T I V IE N + IET+ NGS R YYLT + + +++W+ Sbjct: 19 IYPLDPADYEIHKQGYLIKSPPLKNGRRSNYFVFQSKYRKRYFIIH-TNNTNSKIYFDYFCKHEDLKYPKGSIDLNQITKISYPVHIEGKNRLLIETE----NGS-NRREYYLTSVNN-DEDEMQSWI 139
BLAST of GRB2 associated binding protein-1 vs. Planmine SMEST
Match: SMESG000042332.1 (SMESG000042332.1) HSP 1 Score: 51.6026 bits (122), Expect = 1.024e-7 Identity = 40/148 (27.03%), Postives = 72/148 (48.65%), Query Frame = 3 Query: 138 NHYEIIKEGYLLKSPPLNN--------------DEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPT-GTIDLMQCTNIKMNV--KIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIVNALNM 530 N+ +II EG L KSPPL + D + + F K+W++RYF+L++ + +++ YFK L + G+I+L ++ +V K+ K+N +I+T N +R YYL+ ++ W+ +V L + Sbjct: 9 NNIQIIYEGILKKSPPLKSKSLFSMIAKFSCATDNEKTSIIFQKRWRKRYFVLFKNIDKPHDVHLLYFKSKPLPDSKSLGSINLENFRSLAFDVGKKLNKTNVFSIQTTDDKGN----NRDYYLS---ANSFEIMKTWVDKLVACLGL 149
BLAST of GRB2 associated binding protein-1 vs. Planmine SMEST
Match: SMESG000042332.1 (SMESG000042332.1) HSP 1 Score: 50.8322 bits (120), Expect = 2.008e-7 Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 3 Query: 138 NHYEIIKEGYLLKSPPLNNDEAEIKMGFLKKWKRRYFILYRAKEYENEIFFDYFKRHHLTHIPT-GTIDLMQCTNIKMNV--KIEKSNAMAIETKYVNFNGSLADRIYYLTPTDQCHQRTLEAWLTAIVNALNM 530 N+ +II EG L KSPPL + K+W++RYF+L++ + +++ YFK L + G+I+L ++ +V K+ K+N +I+T N +R YYL+ ++ W+ +V L + Sbjct: 9 NNIQIIYEGILKKSPPLK--SKSLFSMIAKRWRKRYFVLFKNIDKPHDVHLLYFKSKPLPDSKSLGSINLENFRSLAFDVGKKLNKTNVFSIQTTDDKGN----NRDYYLS---ANSFEIMKTWVDKLVACLGL 133 The following BLAST results are available for this feature:
BLAST of GRB2 associated binding protein-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 3
BLAST of GRB2 associated binding protein-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of GRB2 associated binding protein-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of GRB2 associated binding protein-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022438 ID=SMED30022438|Name=GRB2 associated binding protein-1|organism=Schmidtea mediterranea sexual|type=transcript|length=621bpback to top protein sequence of SMED30022438-orf-1 >SMED30022438-orf-1 ID=SMED30022438-orf-1|Name=SMED30022438-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=167bp MTEINIKGEQYVRKNSQKIKPQSKICYPLNTNHYEIIKEGYLLKSPPLNNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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