RIB43A-like with coiled-coils protein 2

Overview


Name	RIB43A-like with coiled-coils protein 2
Smed ID	SMED30022421
Length (bp)	1230

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RIB43A-like with coiled-coils protein 2 (SMED30022421) t-SNE clustered cells

Violin plots show distribution of expression levels for RIB43A-like with coiled-coils protein 2 (SMED30022421) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RIB43A-like with coiled-coils protein 2 (SMED30022421) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RIB43A-like with coiled-coils protein 2 (SMED30022421) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30022421

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30022421	SMESG000037028.1	SmedASXL_010476	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neuron	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30022421	SMESG000037028.1	Contig49187	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30022421	SMESG000037028.1	Contig49187	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
head region	SMED30022421	SMESG000037028.1	dd_Smed_v6_4547_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017
epidermis	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
ciliated epithelial cell	SMED30022421	SMESG000037028.1	dd_Smed_v4_4547_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Match: RIBC2 (RIB43A domain with coiled-coils 2 [Source:HGNC Symbol;Acc:HGNC:13241])

HSP 1 Score: 248.44 bits (633), Expect = 2.913e-78
Identity = 156/375 (41.60%), Postives = 239/375 (63.73%), Query Frame = 1

Query:   40 LPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDL-FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            LP DL++   + +RR  E  R+ R+FN++ R IG DT + D Q+++++ KE  +      +AA   + DKI  ++E R+  D K L +A+N+F+Q  Q+PE RREFDL DP  LKKD PAR SD+D R  IS +QKF GEDLN   R   Q +Q + W   Q  E +NA    K A+ L+   +++ D+ A  L + E   RKA+  ++ ++N++   E + +++ + +Q+++D    I+N L  DLL+ENP Q+ S+FG HR++PDR+KGM++EQL+QI   Q++Q  EK L L++E++ +DL +D++RI  AR+ LL ER+  R++  + + L   N+ L+K+      Y+N EVYTNQPT DYF QFNT SR
Sbjct:   10 LPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEKARHETFAAEMRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEK-LRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSLAKEQHLQKKYMN-EVYTNQPTGDYFTQFNTGSR 382

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Match: RIBC1 (RIB43A domain with coiled-coils 1 [Source:HGNC Symbol;Acc:HGNC:26537])

HSP 1 Score: 166.777 bits (421), Expect = 5.520e-47
Identity = 122/379 (32.19%), Postives = 204/379 (53.83%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MY +    D KEA  IE RR +E+ R++R FN + R +GVD  +L+ Q+ +++ +E  +   +  Y  + ++ D + Q++EK + D  ++L K + EFR+  Q+ +  REF L+DP  + K  P  +S  +   G +S+Q F GEDL+   R  +Q+ Q +  LE Q  E+Q A         L +  ++ +D +A  L + EE CR A+  A++N N+A    +  ++R + Q+++      I +   SDLLTENP  +      +R++P  +KGM+ EQ   I   Q+ QR +K    + E+ L   +  Q ++ A++ L +E +         + L   N +L+ + +   +YLN  +YTNQPTA Y  QFNT SR
Sbjct:    1 MYNIKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLERQQQEQQQAKVDENYTDALSNQLRLAMDAQATHLARLEESCRAAMMCAMANANKAQAAVQAGRQRCERQREQKANLAEIQHQSTSDLLTENPQVAQHPMAPYRVLPYCWKGMTPEQQAAIRKEQEVQRSKKQAHRQAEKTLDTEWKSQTMSSAQAVLELEEQERELCAVFQRGLGSFNQQLANEQKAQQDYLNSVIYTNQPTAQYHQQFNTSSR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Match: RIBC1 (RIB43A domain with coiled-coils 1 [Source:HGNC Symbol;Acc:HGNC:26537])

HSP 1 Score: 103.219 bits (256), Expect = 1.898e-25
Identity = 56/165 (33.94%), Postives = 95/165 (57.58%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLE 519
            MY +    D KEA  IE RR +E+ R++R FN + R +GVD  +L+ Q+ +++ +E  +   +  Y  + ++ D + Q++EK + D  ++L K + EFR+  Q+ +  REF L+DP  + K  P  +S  +   G +S+Q F GEDL+   R  +Q+ Q +  LE
Sbjct:    1 MYNIKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLE 165

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Match: RIBC1 (RIB43A domain with coiled-coils 1 [Source:HGNC Symbol;Acc:HGNC:26537])

HSP 1 Score: 102.834 bits (255), Expect = 4.385e-25
Identity = 56/165 (33.94%), Postives = 95/165 (57.58%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLE 519
            MY +    D KEA  IE RR +E+ R++R FN + R +GVD  +L+ Q+ +++ +E  +   +  Y  + ++ D + Q++EK + D  ++L K + EFR+  Q+ +  REF L+DP  + K  P  +S  +   G +S+Q F GEDL+   R  +Q+ Q +  LE
Sbjct:    1 MYNIKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQKQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFRYNLE 165

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Match: RIBC1 (RIB43A domain with coiled-coils 1 [Source:HGNC Symbol;Acc:HGNC:26537])

HSP 1 Score: 48.521 bits (114), Expect = 8.573e-6
Identity = 24/68 (35.29%), Postives = 40/68 (58.82%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAA 228
            MY +    D KEA  IE RR +E+ R++R FN + R +GVD  +L+ Q+ +++ +E  +   +  Y A
Sbjct:    1 MYNIKQSTDTKEAAAIEARRNREKERQNRFFNVRNRVMGVDVQALNNQVGDRKRREAAERSKEAAYDA 68

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Fly
Match: CG7264 (gene:FBgn0036214 transcript:FBtr0076035)

HSP 1 Score: 125.946 bits (315), Expect = 3.288e-32
Identity = 100/280 (35.71%), Postives = 159/280 (56.79%), Query Frame = 1

Query:   49 DLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKEL-NKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRAC------DLLQSEEDCRKAINLALSNYNEAL-RQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKE 864
            DL EA ++++R   E+ RK RIFN+K R  G+D   LD+QI EK+ +   Q E D  +     ++ K   L ++ +L+  + + +  LN +R  +QR EQRREFDL DPN LKK +P RV+D+D   G+SS Q F GEDL    R   QR+Q + WL+ Q+ E++ A +A K+A        + +D   C      ++ +S+   R  +   +  +N  + +Q+++ +ER K ++ EDD    I N L SD+LTENP+ + S    ++ I   ++GM+ E
Sbjct:   12 DLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDRQILEKKKQRTAQMECDKKFEEQE-QLQKRLILAQEMELEKKQRVVDSDLNYYRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDLYNSDRKQRQREQQRAWLDQQVQERKRAEDARKQAD------NVLMDNVGCRDKHLQEMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDD-MAEIYNMLSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPE 283

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Fly
Match: CG7264 (gene:FBgn0036214 transcript:FBtr0332130)

HSP 1 Score: 125.946 bits (315), Expect = 3.288e-32
Identity = 100/280 (35.71%), Postives = 159/280 (56.79%), Query Frame = 1

Query:   49 DLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKEL-NKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRAC------DLLQSEEDCRKAINLALSNYNEAL-RQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKE 864
            DL EA ++++R   E+ RK RIFN+K R  G+D   LD+QI EK+ +   Q E D  +     ++ K   L ++ +L+  + + +  LN +R  +QR EQRREFDL DPN LKK +P RV+D+D   G+SS Q F GEDL    R   QR+Q + WL+ Q+ E++ A +A K+A        + +D   C      ++ +S+   R  +   +  +N  + +Q+++ +ER K ++ EDD    I N L SD+LTENP+ + S    ++ I   ++GM+ E
Sbjct:   12 DLDEAMKLQKREQYEDERKRRIFNAKQRLYGLDLEMLDRQILEKKKQRTAQMECDKKFEEQE-QLQKRLILAQEMELEKKQRVVDSDLNYYRCRYQRKEQRREFDLNDPNFLKKARPTRVADNDISLGVSSAQIFQGEDLYNSDRKQRQREQQRAWLDQQVQERKRAEDARKQAD------NVLMDNVGCRDKHLQEMAKSDHQMRNQVIQRVRQFNINMAKQKQLDREREKREKYEDD-MAEIYNMLSSDMLTENPDVAQSRTDPNKKIAFMYRGMTPE 283

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Zebrafish
Match: ribc2 (RIB43A domain with coiled-coils 2 [Source:ZFIN;Acc:ZDB-GENE-050411-27])

HSP 1 Score: 175.637 bits (444), Expect = 1.184e-50
Identity = 134/369 (36.31%), Postives = 213/369 (57.72%), Query Frame = 1

Query:   61 ANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLK-HQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQ-RIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            A  +++RRI+E+ R+ RIF+ K+R IGVD ++L QQI E+R KE+ +     +YA   +  D I  ++E+RQ  D ++LNK + +FRQ  Q+   RREFDL DP  LKK +  R+           +    GEDL  K R   Q++Q+  W   Q  E + A    K+ +  +D  ++ LD RA +L + EE  ++ + +A  ++N AL  E I   RL+ H+++E++ +T I N L  DLL ENP Q++S  G  R+  D +KGMS ++LQ     Q++Q  ++     ++RQ KDL + Q R++ AR+ LL+ER+ +R   ++ + +   N +L+  H     +L ++VYTN P   Y+ QFNT SR
Sbjct:   13 AVHLDRRRIREQKRQERIFSDKVRTIGVDIDALGQQIKERREKEQREANELKVYADDLLCSDGIACILEQRQKKDERQLNKDIVQFRQQFQQASSRREFDLNDPELLKKQEGQRI-----------LPGLVGEDLGQKNRLRKQQEQLYSWTTQQKEEVERAKLQRKQEENQYDQIRMSLDSRALELQKMEEQTKRDLLIATKDFNLALAAE-ITHRRLQEHREEEENNQTEIYNQLNGDLLMENPEQNVSVLGLSRLRRDCYKGMSPQELQTYTQYQRQQAEDRKRANMEQRQ-KDLQEHQERMSSARAALLLERQQARINKELRRAMDNSNSQLAHIHDARKKHL-QDVYTNIPDERYYSQFNTSSR 367

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Zebrafish
Match: ribc1 (RIB43A domain with coiled-coils 1 [Source:ZFIN;Acc:ZDB-GENE-081031-7])

HSP 1 Score: 127.872 bits (320), Expect = 8.019e-33
Identity = 127/390 (32.56%), Postives = 218/390 (55.90%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLK-ELNKALNEFRQLHQRPEQRREFDL-YDPNGLKKDKPARV-SDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSM----SAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIER---EISRQKN-QIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYK+DLPVD      +E+RR  E  RKSRIFN++ R IGVD  +L +Q  +K+ +++++ + D  Y    + +D++  + +K++ D+++ EL + L +FR +HQR E  R+ D+ YD    +K  P    S  D   G +S+Q F GE +    +   Q +  ++ L  Q  E++  +   K+ + L     +E D RA  L   EE+C++   +ALS+YN+A  +ER+ +E+ +  + E +    +   + SDLLTE P  +     S+  + R++ DR+KGMS +Q+  I   ++ Q  EK    E+E++ +  +D     Q+R     ER   E+ R++  Q+DK     N +L+++ Q    +L+K++YTN+P+  YF QF+T SR
Sbjct:    1 MYKVDLPVDESVRQAVERRRAAEAERKSRIFNTRTRVIGVDLRALHKQQGDKQERKEMEKQRDVSYDLLRLSLDEMA-MHQKKEEDEVRGELARDLVQFRAIHQRAEDSRDADINYD----RKGAPTTCESVPDSALGPASMQVFLGEGIKEDEKKRSQMELNEKNLRAQKEEREQRVREEKKRELLTSRVLVEKDLRAVQLNALEEECKREAQVALSHYNQAQAEERMEREQQERMRREGEELAELRYMVTSDLLTERPEAAARTTESSPNAPRVLTDRWKGMSPQQISDIHRKREEQCFEKERLREREKRRELAWDYHLTEQSRQQERDERKDMELQRERRIQLDKY----NQQLAREQQAHQQFLDKQLYTNRPSVQYFTQFSTSSR 381

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Zebrafish
Match: ribc2 (RIB43A domain with coiled-coils 2 [Source:ZFIN;Acc:ZDB-GENE-050411-27])

HSP 1 Score: 94.7449 bits (234), Expect = 5.213e-22
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 1

Query:   61 ANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNA 546
            A  +++RRI+E+ R+ RIF+ K+R IGVD ++L QQI E+R KE+ +     +YA   +  D I  ++E+RQ  D ++LNK + +FRQ  Q+   RREFDL DP  LKK +  R+           +    GEDL  K R   Q++Q+  W   Q  E + A
Sbjct:   13 AVHLDRRRIREQKRQERIFSDKVRTIGVDIDALGQQIKERREKEQREANELKVYADDLLCSDGIACILEQRQKKDERQLNKDIVQFRQQFQQASSRREFDLNDPELLKKQEGQRI-----------LPGLVGEDLGQKNRLRKQQEQLYSWTTQQKEEVERA 163

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Xenopus
Match: ribc1 (RIB43A domain with coiled-coils 1 [Source:NCBI gene;Acc:100216275])

HSP 1 Score: 314.309 bits (804), Expect = 4.860e-104
Identity = 185/379 (48.81%), Postives = 250/379 (65.96%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYK+DL  D K+   IE+RR +E+ R+SRIFN+K R IGVD   LD+Q+ E + +E  +   +  Y A  +  DKI Q++E+RQ      L K + EFR  HQ+P  RREFDLYDP  LKKD+PARV D+DPRCG +S+QK  GEDLN K R  +Q D  K+WL  Q+ E+Q      K A  L+D K++ELD+RA  L   EE+CRKAI+LA  NYNEAL  E    +RL+ QQ++DD    I N L  D+LTE+P  + S++G HR+IPDR+KGMS EQLQ I +TQ++QR EK    E+E+QL+  +D+QR   AR+ + +E++      ++ K+L   N +LSK+ +  + YL KEVYTN PTA +F QFNT SR
Sbjct:    1 MYKVDLLPDPKQIAAIERRRNQEQQRQSRIFNAKCRTIGVDVQKLDKQVQELKLRESTEKASNEAYDAERLLNDKIAQMLEQRQEQLAHSLEKDVQEFRDQHQQPHTRREFDLYDPEALKKDQPARVGDEDPRCGPASLQKLAGEDLNEKERKKMQMDLTKKWLSEQIEERQRIQHQAKYADNLYDRKRVELDERALHLSTMEEECRKAISLATKNYNEALGLEASEGKRLRKQQEQDDNFAEIYNHLTGDILTEDPAAASSSYGPHRVIPDRWKGMSPEQLQAIRETQEQQRQEKHRLKEQEKQLEAEWDQQRFLAARAAMTLEQQEQEMNKELRKRLDLYNQQLSKEQKAHLEYLEKEVYTNNPTAHFFTQFNTTSR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Xenopus
Match: RIBC2 (RIB43A domain with coiled-coils 2 [Source:NCBI gene;Acc:100151719])

HSP 1 Score: 271.552 bits (693), Expect = 2.163e-87
Identity = 158/379 (41.69%), Postives = 245/379 (64.64%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MY+LDLP D +EA+ +E++R  E  R +RIF+S  R +GVD  +LD QI +K+ +E+++N+    YAA   + D+I   +++R   D+++LNKA++EFR   Q+ E RRE+DL DP  LKK+ P RVSD DPRC +S +Q+  GEDL    R  +Q++Q++ W   Q  E+  ALE  +     +D  ++ELDQ+A +L Q E   R+A+  A  ++N A  +E   +++L+ +Q+E+D    ISN +  DLL+E+P Q+ SAFG HR++PDR+KGMS  QL+ I + QQ+Q  E+M   E+ER  +    +QR+  AR+ +L+ER+  R++ ++ K     N++L++  +    YL+KEV+TN PT  YF QFNT SR
Sbjct:    1 MYRLDLPADRREASLLERKRTAELQRHNRIFSSHTRTVGVDKPALDTQIQDKKLQEEIENKRKEAYAAQMKQNDQIASALDERMQRDVRDLNKAIDEFRLTFQKKEDRREYDLSDPEALKKELPPRVSDGDPRCTVSGVQRLLGEDLTVDSRRQMQQEQLREWSLQQQEEQARALEEQRLRDGNYDKMRVELDQKAAELQQLELQTRRAVCAATKDFNRAQAEETTERKKLERKQEEEDNSVEISNLINGDLLSEDPAQAASAFGPHRVVPDRWKGMSSAQLEAINNVQQQQIQERMRLREEERVREAELYRQRVQAARAMVLLERQQKREEKELRKAQDHMNLQLAQAQRAQKTYLDKEVFTNNPTDRYFEQFNTSSR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Xenopus
Match: RIBC2 (RIB43A domain with coiled-coils 2 [Source:NCBI gene;Acc:100151719])

HSP 1 Score: 236.498 bits (602), Expect = 4.438e-74
Identity = 141/348 (40.52%), Postives = 225/348 (64.66%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSK 1068
            MY+LDLP D +EA+ +E++R  E  R +RIF+S  R +GVD  +LD QI +K+ +E+++N+    YAA   + D+I   +++R   D+++LNKA++EFR   Q+ E RRE+DL DP  LKK+ P RVSD DPRC +S +Q+  GEDL    R  +Q++Q++ W   Q  E+  ALE  +     +D  ++ELDQ+A +L Q E   R+A+  A  ++N A  +E   +++L+ +Q+E+D    ISN +  DLL+E+P Q+ SAFG HR++PDR+KGMS  QL+ I + QQ+Q  E+M   E+ER  +    +QR+  AR+ +L+ER+  R++ ++ K     N++L++
Sbjct:    1 MYRLDLPADRREASLLERKRTAELQRHNRIFSSHTRTVGVDKPALDTQIQDKKLQEEIENKRKEAYAAQMKQNDQIASALDERMQRDVRDLNKAIDEFRLTFQKKEDRREYDLSDPEALKKELPPRVSDGDPRCTVSGVQRLLGEDLTVDSRRQMQQEQLREWSLQQQEEQARALEEQRLRDGNYDKMRVELDQKAAELQQLELQTRRAVCAATKDFNRAQAEETTERKKLERKQEEEDNSVEISNLINGDLLSEDPAQAASAFGPHRVVPDRWKGMSSAQLEAINNVQQQQIQERMRLREEERVREAELYRQRVQAARAMVLLERQQKREEKELRKAQDHMNLQLAQ 348

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Mouse
Match: Ribc2 (RIB43A domain with coiled-coils 2 [Source:MGI Symbol;Acc:MGI:1914997])

HSP 1 Score: 206.838 bits (525), Expect = 1.894e-62
Identity = 142/378 (37.57%), Postives = 223/378 (58.99%), Query Frame = 1

Query:   40 LPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKE----VYTNQPTADYFMQFNTCSR 1161
            +  DL++   + ++R  +  R+ RIF+++ R IG DT + D Q+ +++ KE         +AA     DK+  +   R+    K+L +A+N+F+Q  Q+PE RREFDL DP  L+K+ PAR+SD+D R  IS +QKF GEDLN + R   Q++Q + W   Q  E++ A      A+ LH   +++ D+ A +L++ E   RK +  A+  +N+    E   ++R + QQ+++D  T I+N L  DLL+ENP    S+FGSHR++ DR+KGM++EQL++I  TQ+RQ  EK+   E+ERQ    +D +RI +A + LL ER+  R   +  + L   N+ L++       YL K+      ++QPT DYF QFNT SR
Sbjct:    5 MSKDLQQEANLAKKRYIDLCRQGRIFDARNRIIGGDTQAWDFQVRDQKIKEITDKARHEAFAAEMKHNDKVMCMAHDREQRHRKQLCRAINDFQQNFQKPETRREFDLSDPLALQKELPARISDNDMRNTISGMQKFMGEDLNFQERRRFQKEQSREWFLQQHGEREKARADHLLAEHLHTQTRLKFDETARELMKLEGSTRKEVCAAVKAFNKNQVVELTERKRQEKQQEQEDNMTEITNLLHGDLLSENPRPVASSFGSHRVVLDRWKGMNREQLEEIWFTQKRQIQEKLRLQEEERQHSMDWDLRRIRKAHASLLHERQQQRLLREQRRALDCSNLNLARQ-----QYLQKKQMNTASSSQPTEDYFSQFNTRSR 377

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Mouse
Match: Ribc1 (RIB43A domain with coiled-coils 1 [Source:MGI Symbol;Acc:MGI:1913861])

HSP 1 Score: 169.474 bits (428), Expect = 3.672e-48
Identity = 135/380 (35.53%), Postives = 215/380 (56.58%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFR-QLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDL  D +E   IE RR +E+ R+SR FN + R +GVD  +L+ Q+ E++ +E ++   D  Y       D + Q++EK + +    L+K + +FR Q  Q+ +   EFD +DP+  ++ +     + D   G +S+Q F GEDL       +Q++QM+  LE Q+ E+Q A E   RA  L D  ++  D RA +L + EE CR A+  A++N N+A   ++ +++R + Q+ ++   T +   + SDLLTENP  +  A   HR++P  +KGMS EQ   I  TQ+ QR EK  + + E+ ++  + +Q    A + L +E +      +  + L   N +L+K+ Q   NYLN  +YTNQPTA Y++QFNT SR
Sbjct:    1 MYKLDLVSDPRELAAIEARRNREKERQSRFFNVRNRVMGVDVEALNYQVEERKFREAIERNKDIAYGTKHAHYDLVAQMLEKEEAERAYRLSKRVQDFREQRQQQYKNGHEFDFWDPDQFQEFRVP-YYEKDAYFGPASMQYFFGEDLERASHVRMQQEQMRYNLEKQLQEQQAAREEEARAALLSDQLRLAADTRAAELARLEESCRAAMRTAMANANKAQAAKQALQQRREQQRQQEANLTEVKKQVTSDLLTENPQVAQRANAPHRVLPYCWKGMSAEQRAAIRKTQETQRQEKKEQRQAEKLVEAEWGRQNKRLAEAALELEEQERELCAEFRRGLGSFNRELAKEQQAQQNYLNSVIYTNQPTAHYYLQFNTSSR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Mouse
Match: Ribc2 (RIB43A domain with coiled-coils 2 [Source:MGI Symbol;Acc:MGI:1914997])

HSP 1 Score: 125.561 bits (314), Expect = 3.964e-33
Identity = 75/215 (34.88%), Postives = 124/215 (57.67%), Query Frame = 1

Query:   34 LDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYN 678
            + +  DL++   + ++R  +  R+ RIF+++ R IG DT + D Q+ +++ KE         +AA     DK+  +   R+    K+L +A+N+F+Q  Q+PE RREFDL DP  L+K+ PAR+SD+D R  IS +QKF GEDLN + R   Q++Q + W   Q  E++ A      A+ LH   +++ D+ A +L++ E   RK +  A+  +N
Sbjct:    3 VAMSKDLQQEANLAKKRYIDLCRQGRIFDARNRIIGGDTQAWDFQVRDQKIKEITDKARHEAFAAEMKHNDKVMCMAHDREQRHRKQLCRAINDFQQNFQKPETRREFDLSDPLALQKELPARISDNDMRNTISGMQKFMGEDLNFQERRRFQKEQSREWFLQQHGEREKARADHLLAEHLHTQTRLKFDETARELMKLEGSTRKEVCAAVKAFN 217

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BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Match: sp|Q9H4K1|RIBC2_HUMAN (RIB43A-like with coiled-coils protein 2 OS=Homo sapiens OX=9606 GN=RIBC2 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 1.399e-77
Identity = 156/375 (41.60%), Postives = 239/375 (63.73%), Query Frame = 1

Query:   40 LPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDL-FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            LP DL++   + +RR  E  R+ R+FN++ R IG DT + D Q+++++ KE  +      +AA   + DKI  ++E R+  D K L +A+N+F+Q  Q+PE RREFDL DP  LKKD PAR SD+D R  IS +QKF GEDLN   R   Q +Q + W   Q  E +NA    K A+ L+   +++ D+ A  L + E   RKA+  ++ ++N++   E + +++ + +Q+++D    I+N L  DLL+ENP Q+ S+FG HR++PDR+KGM++EQL+QI   Q++Q  EK L L++E++ +DL +D++RI  AR+ LL ER+  R++  + + L   N+ L+K+      Y+N EVYTNQPT DYF QFNT SR
Sbjct:   10 LPRDLRQDANLAKRRHAELCRQKRVFNARNRIIGGDTEAWDVQVHDQKIKEATEKARHETFAAEMRQNDKIMCILENRKKRDRKNLCRAINDFQQSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQEQLEQIRLVQKQQIQEK-LRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRALDSSNLSLAKEQHLQKKYMN-EVYTNQPTGDYFTQFNTGSR 382

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BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Match: sp|Q32LJ7|RIBC2_BOVIN (RIB43A-like with coiled-coils protein 2 OS=Bos taurus OX=9913 GN=RIBC2 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 1.102e-65
Identity = 155/373 (41.55%), Postives = 221/373 (59.25%), Query Frame = 1

Query:   43 PVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            P DLKE   + +RR  E  R+ RIFN++ R IG DT + D Q+ ++  K   +   D  +AA   + DKI  L E R+  D K L KA+N+F+Q  QRPE RREFDL DP  LKKD+PAR SD D R  IS +QKF GEDLN   R   Q +Q + W   Q  E+    E  K A+ L+   +++ D+ A  L   E   RKA+   +  +N+    E   K+  + +Q+++D    ISN L  DLL+ENP Q+ S+FG HR++PDR+KGMS+EQL++I   Q++Q  EK+   E+ERQ    +D++RI +AR+ LL E++  R +  + + L   N+ L+++ Q +     KE+ TN  T DYF QFNT SR
Sbjct:    6 PKDLKEDFVLAKRRHAELVRQKRIFNARNRIIGGDTTAWDAQVCDQNIKAATEKARDEAFAAEMRQNDKIACLSENRERRDRKNLCKAINDFQQSFQRPETRREFDLSDPLALKKDRPARQSDYDARNTISGMQKFMGEDLNFHLRKKFQEEQNREWSLQQQKEQMIGRENQKCAEDLYLKTRLQFDETAKHLQNLETATRKAVCATVKEFNKNQALESAEKKIQERKQEQEDNLAEISNMLRGDLLSENPQQAASSFGPHRVVPDRWKGMSQEQLEEIRLVQRQQVQEKLRLQEEERQRDMDWDRRRIQKARATLLFEQQQQRLQRGLRRALDCSNLSLARE-QLLQKKHMKELCTNHATEDYFTQFNTGSR 377

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BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Match: sp|Q6AXN9|RIBC2_RAT (RIB43A-like with coiled-coils protein 2 OS=Rattus norvegicus OX=10116 GN=Ribc2 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 4.063e-64
Identity = 145/378 (38.36%), Postives = 222/378 (58.73%), Query Frame = 1

Query:   40 LPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNK----EVYTNQPTADYFMQFNTCSR 1161
            +P DL++   + ++R  +  R+ +IF+++ R IG DT + D Q+  ++ KE  +   D  +AA     DK+  +M  R+L   K+L +A+N+F+Q  Q+PE RREFDL DP  LKK+ PARVSD+D R  IS +QKF GEDLN + R  +Q++Q + W   Q  E + A    K A+ LH   +++ D+ A DL + E   RKA+  A+  +N+    E   ++R   QQ+++D  + I+N L  DLL+ENP Q+ S FG   ++ DR+KGM++EQL++I  T ++Q  EK+   E+ERQ    +D +R  +A + LL ER+  R   +  + L   N+ L+K       YL K       ++QPT DYF QFNT SR
Sbjct:    5 IPKDLQQEASLAKKRYMDLCRQGQIFDARNRIIGGDTQAWDVQVRNQKIKEVTEKARDETFAAEMRHNDKVMCIMHDRELRHRKQLCRAINDFQQRFQKPETRREFDLSDPLALKKELPARVSDNDMRNTISGMQKFMGEDLNFQERKRIQKEQNREWSLQQHGEWERAQAEHKLAEHLHTQTELKFDEAARDLQRLEITTRKAVCAAVKEFNKKQVVELAERKRQVKQQEQEDNMSEITNLLHGDLLSENPQQAASNFGPRHVMLDRWKGMNREQLEEIWSTWKQQIHEKLRLQEEERQHNMDWDLRRTRKAHASLLQERQQQRLLREQRRALDCSNLSLAKQQ-----YLQKRQLDAAPSSQPTEDYFSQFNTRSR 377

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Match: sp|Q9D4Q1|RIBC2_MOUSE (RIB43A-like with coiled-coils protein 2 OS=Mus musculus OX=10090 GN=Ribc2 PE=2 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.325e-61
Identity = 142/378 (37.57%), Postives = 223/378 (58.99%), Query Frame = 1

Query:   40 LPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKE----VYTNQPTADYFMQFNTCSR 1161
            +  DL++   + ++R  +  R+ RIF+++ R IG DT + D Q+ +++ KE         +AA     DK+  +   R+    K+L +A+N+F+Q  Q+PE RREFDL DP  L+K+ PAR+SD+D R  IS +QKF GEDLN + R   Q++Q + W   Q  E++ A      A+ LH   +++ D+ A +L++ E   RK +  A+  +N+    E   ++R + QQ+++D  T I+N L  DLL+ENP    S+FGSHR++ DR+KGM++EQL++I  TQ+RQ  EK+   E+ERQ    +D +RI +A + LL ER+  R   +  + L   N+ L++       YL K+      ++QPT DYF QFNT SR
Sbjct:    5 MSKDLQQEANLAKKRYIDLCRQGRIFDARNRIIGGDTQAWDFQVRDQKIKEITDKARHEAFAAEMKHNDKVMCMAHDREQRHRKQLCRAINDFQQNFQKPETRREFDLSDPLALQKELPARISDNDMRNTISGMQKFMGEDLNFQERRRFQKEQSREWFLQQHGEREKARADHLLAEHLHTQTRLKFDETARELMKLEGSTRKEVCAAVKAFNKNQVVELTERKRQEKQQEQEDNMTEITNLLHGDLLSENPRPVASSFGSHRVVLDRWKGMNREQLEEIWFTQKRQIQEKLRLQEEERQHSMDWDLRRIRKAHASLLHERQQQRLLREQRRALDCSNLNLARQ-----QYLQKKQMNTASSSQPTEDYFSQFNTRSR 377

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Match: sp|Q0VC09|RIBC1_BOVIN (RIB43A-like with coiled-coils protein 1 OS=Bos taurus OX=9913 GN=RIBC1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.723e-52
Identity = 128/379 (33.77%), Postives = 207/379 (54.62%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MY++DLP D KE   IE RR +E  ++SR FN + R +GVD  +L+ Q+ E++ +E  +   +  Y    +R D + Q++EK Q +  + L K +  FR+  Q+   R E D ++ N L ++ PA + D+ P  G +S+Q F GEDL       +Q++Q +  LE Q+ E+Q A      A  L+D  ++ +D RA  L + EE CR A+  A ++ N+A   +   ++  +HQ+ ++     + N + SDLLTENP  + +    HR++P  +KGM+ EQ   I   Q+ Q  EK  + + E+ L   ++ Q I  A++   +E +      +  + L   N +L+ +     NYLN  +YTNQPTA Y +QFNT SR
Sbjct:    1 MYQVDLPPDPKEVAAIEARRNQEREQQSRFFNVRTRVMGVDVEALNNQVEERKLQEATERSKEAAYGTNQVRYDLVAQMLEKEQAERTRRLAKKVQNFREQRQKLRNRCELDFWNSNQLWREFPAYLGDNAPYYGQASLQCFSGEDLERATYLRMQQEQFQYSLERQLQEQQQARVDENCADMLNDQLRLAMDMRAAQLAKLEESCRIAMMAATASANKAQAVKLAEQQGQEHQRQQEANLVEVQNQITSDLLTENPQVAQNPVAPHRVLPYCWKGMTPEQRATIRKVQETQHHEKEAQRQAEQALDAKWESQAINLAQAAKELEEQERELCAEFRRGLGSFNQQLAMEQNAQQNYLNSIIYTNQPTAQYHLQFNTSSR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Match: A0A504YEC3 (RIB43A domain with coiled coils 1 OS=Fasciola gigantica OX=46835 GN=FGIG_09494 PE=4 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 1.248e-139
Identity = 216/380 (56.84%), Postives = 286/380 (75.26%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKD-LFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLP+D KEA  I+ RR +E++R+SRIFN+++RQIGVD  +L QQ  E+R KE L+ E +  YA+ AIR DKI  +++ RQ  D +E+N+ALN FR LHQ+PE RREFDLYDP  LKKD+PARVSDDDPRCG+SS+QKFDGEDLN + R   QR+QM+ W E Q+ E++ A E  K A+RL+ LK+ ELDQRAC+L ++EEDCR+AIN+A+  +N+ALR E+  +   K +Q++DD  T I NA+  D+LTENP Q++SA G +R++PDRFKGMSKEQL +I   QQ Q  EK   L  E +L+D  +D+QR+  A+ GLL+EREI R   +I K+LA+EN+KL++D +   +YL+ EVYTNQPTADYF QFNT SR
Sbjct:    1 MYKLDLPIDHKEAAIIDARRKREQARQSRIFNARVRQIGVDEEALKQQAEERRKKELLEKERELAYASDAIRNDKIVCILQARQERDQREINQALNTFRSLHQQPESRREFDLYDPEALKKDRPARVSDDDPRCGVSSLQKFDGEDLNQQARCQYQREQMQNWFERQIEERRRAEEVQKEAERLNALKRRELDQRACELAKAEEDCRRAINMAVQRFNDALRVEQEQRRLQKAKQEQDDNMTEICNAIYGDMLTENPAQAISALGPNRVVPDRFKGMSKEQLAEIHREQQEQMREKE-RLRAEEKLRDEEWDQQRVKSAKLGLLLEREIERSSKEISKRLADENLKLAEDQKAFRDYLDHEVYTNQPTADYFTQFNTTSR 379

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Match: A0A2C9JD92 (Uncharacterized protein OS=Biomphalaria glabrata OX=6526 GN=106054123 PE=4 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 2.239e-132
Identity = 209/383 (54.57%), Postives = 288/383 (75.20%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDL----FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLPVD K+A  IE+RR  EE RK+RIFN+K+RQIG+D  ++DQQI +++  E  + +    +AA A+R D+I  L+EKRQ  D++ LN+ALNEFR LHQ+P QRRE+DLYDP+GLKKDKPARV DDDPRCG++SIQKFDGEDLN K R  +Q +Q ++W E QM E++ A    + A RL++LKQ ELD+RA  L Q+EE+CRKAI++A ++YN+AL+ E+  +ERLK QQ++DD  T I+N +  D+LTENP  + SAFG HR+IPDR+KGMS +QL++I   Q R    +M E E+ RQ ++L    +D+Q  A AR+ LLIE+E+ R++ +I+K  A+EN +L+++ +  I++LNKEVYTN PT+ YFMQFNT +R
Sbjct:    1 MYKLDLPVDYKQAAAIERRRAMEEERKTRIFNAKVRQIGIDKQAIDQQIFDRKQMEDYERKRHEAFAADALRNDRIAVLLEKRQEQDIRALNEALNEFRALHQQPNQRREWDLYDPDGLKKDKPARVHDDDPRCGVASIQKFDGEDLNSKARKKLQNEQSRKWHEAQMRERERARRNQEEADRLYELKQRELDERAIQLQQAEEECRKAIDMATASYNDALKNEQRERERLKRQQEQDDNMTEIANHVFGDILTENPAVAQSAFGPHRVIPDRWKGMSPQQLEEIRKEQAR----QMAEAERLRQEEELRNREYDRQASANARAALLIEKELERKRKEIEKAQADENRRLAQEQKAHIDFLNKEVYTNSPTSAYFMQFNTSTR 379

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BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Match: A0A4Z2D3L5 (RIB43A-like with coiled-coils protein OS=Schistosoma japonicum OX=6182 GN=EWB00_004928 PE=4 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 3.269e-131
Identity = 209/379 (55.15%), Postives = 279/379 (73.61%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            M+++DLP+D KEA  IE RR +E+ R++RIF+++ RQIG+D  +L  QINEKRS+E +  + D  YAA A+R DKI  L EKRQ DD KEL + LNEFR LHQ+PE RREFDLYDPN LK D PARV DDDPRCG++S+QKFDGEDLN K R + QR+Q++ W + Q+ E+  A  A K A RL+DLK+ ELDQRAC+L ++EE CR+AIN+AL  YN+ L++E   +  LK +Q  DD  T I NA+  D L+ENP Q+MSA G +RIIPDR+KGM+ EQ+++I ++Q+ Q  E+  EL +E+Q  + +D QR+  AR GLLIEREI R   +I +++AE N++L+ + +   +YLNKE+YTNQPT DYF QFNT SR
Sbjct:    1 MFRIDLPIDTKEAAAIETRRRREQERQARIFDARTRQIGIDEEALKHQINEKRSQELIDKQRDFAYAADAVRNDKIACLFEKRQQDDEKELARNLNEFRFLHQQPESRREFDLYDPNALKSDLPARVCDDDPRCGVASLQKFDGEDLNLKARMSYQREQLQNWFDRQIEERNRAERAKKEADRLYDLKRRELDQRACELQKAEEQCRRAINVALQRYNKLLKEENDRRALLKAKQANDDSMTEICNAIYGDFLSENPAQAMSALGINRIIPDRYKGMTPEQIEEIRNSQKEQIKERQRELAREKQEDEEWDNQRLKSARLGLLIEREIERSTREIRRKIAETNLQLANEQKAFQDYLNKELYTNQPTGDYFNQFNTTSR 379

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Match: A0A3S1AWD9 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_018271 PE=4 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 1.553e-130
Identity = 206/383 (53.79%), Postives = 279/383 (72.85%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDL----FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLPVD KEA+ IE+RR +E+ RK+RIFN+K RQIGVD  +++QQ+ +K+  E+ + +    +AA A+R D+I  +++ RQ  D + LN+ALNEFR LHQ+P  RRE+DLYDP+ LKKDKPARV DDDPRCGISSIQKFDGEDLN K R   Q +Q + W E QM E+  A  + + A RL++LKQ ELDQRA DL ++EEDCR+AIN+A ++YN+AL  E+  + RLK QQD DD+ T I+N +  D+LTENP  + SAFG HR+I DR+KGMS EQ+++I + Q R    +M E E+ RQ ++L     ++Q  A AR+ LLIERE+ R++  I K  A+EN +L+ + +  +++LNKEVYTN P+A YFMQFNT +R
Sbjct:    1 MYKLDLPVDYKEASAIERRRAQEDERKTRIFNAKTRQIGVDRQAIEQQVFDKKQMEEYERKRHEAFAADALRNDRIASMLQARQERDQRSLNQALNEFRSLHQQPSSRREWDLYDPDYLKKDKPARVHDDDPRCGISSIQKFDGEDLNSKARKKFQNEQARSWHEQQMRERDQAKRSQEAADRLYELKQRELDQRAIDLQKAEEDCRRAINMATADYNKALNNEQSERMRLKEQQDLDDKMTEIANNIFGDILTENPAVAQSAFGPHRVITDRWKGMSPEQIEEIRNQQAR----QMAENERLRQEEELRNREHERQASANARAALLIERELERKRRDIQKAQADENRRLAAEQKAHLDFLNKEVYTNPPSAAYFMQFNTSTR 379

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Match: A0A4E0RID9 (RIB43A domain with coiled coils 1 OS=Fasciola hepatica OX=6192 GN=D915_002130 PE=4 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 2.044e-130
Identity = 209/380 (55.00%), Postives = 276/380 (72.63%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKD-LFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLP+D KEA  I+ RR +E++R+SRIFN+++RQIGVD  +L  Q  E++ KE L+ E +  YA               RQ  D +E+N+ALN FR LHQ+PE RREFDLYDP  LKKD+PARVSDDDPRCG+SS+QKFDGEDLN + R   QR+QM+ W E Q+ E++ A EA K A+RL+ LK+ ELDQRAC+L ++EEDCR+AIN+A+  +N+ALR E+  +   K +Q++DD  T I NA+  D+LTENP Q++SA G +R++PDRFKGMSKEQL +I   QQ Q  EK   L  E +L+D  +D+QR+  A+ GLL+EREI R   +I K+LA+EN+KL++D +   +YL+ EVYTNQPTADYF QFNT SR
Sbjct:    1 MYKLDLPIDHKEAAIIDARRKREQARQSRIFNARVRQIGVDEEALKLQTEERQKKELLEKERELAYA---------------RQERDQREINQALNTFRCLHQQPESRREFDLYDPEALKKDRPARVSDDDPRCGVSSLQKFDGEDLNQQARCQYQREQMQNWFERQIEERRRAEEAQKEAERLNALKRRELDQRACELAKAEEDCRRAINMAVQRFNDALRVEQEQRRLQKAKQEQDDNMTEICNAIYGDMLTENPAQAISALGPNRVVPDRFKGMSKEQLAEIHREQQEQMREKE-RLRAEEKLRDEEWDQQRVKSAKLGLLLEREIERSSKEISKRLADENLKLAEDQKAFKDYLDHEVYTNQPTADYFTQFNTTSR 364

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Cavefish
Match: ribc2 (RIB43A domain with coiled-coils 2 [Source:NCBI gene;Acc:103029086])

HSP 1 Score: 139.813 bits (351), Expect = 2.976e-37
Identity = 128/380 (33.68%), Postives = 201/380 (52.89%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDL-FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            M  + LP D   A  ++QR+ +E  RK R+FN+K+R IGVD  +L+ Q+ E+R KE+ +      YA   IR D+   ++E RQ  D + L +A+ +FR   Q P  RREFDL D   LKK             G+  +    GEDL  + R   Q +Q++ W   Q  E +   E  K+    +D  ++ LD RA +L + EE+ ++A  +A+ N+N AL  ER  +   + +++E++ +  I N L  +LL E+  QS    G  R+  D +KGM+ +         Q+Q+ E    +  E+Q +DL  D++R+A AR+ LL+ER+ +R   ++ + L   N  L++       +L KEV+ N P   YF QFNT SR
Sbjct:    1 MNPVQLPSDRLSAAHLDQRQTRELLRKERVFNAKLRTIGVDKEALELQVKERRDKEQAEARALKEYADKLIRSDQTACVLEHRQKKDERLLEEAIVQFRSRFQHPSSRREFDLNDSEFLKKQD-----------GVRILPGLAGEDLASRDRAQRQSEQLRDWSIQQQQELEQTEEQQKQEDLQYDQSRVALDSRAVELQKMEEEHKRANTIAIKNFNLALAAERSEQRERQRREEEENNQVEILNQLQGELLNESIEQSSRVPGRPRLRRDCYKGMTPQ-QLLHYSNYQKQQAEDRRRVRLEQQEEDLQQDRERLASARAALLLERQQARISKELRRSLDNTNALLAQAQHAQRKHLEKEVFINVPNERYFSQFNTSSR 368

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Cavefish
Match: ribc1 (RIB43A domain with coiled-coils 1 [Source:NCBI gene;Acc:103021611])

HSP 1 Score: 129.798 bits (325), Expect = 1.480e-33
Identity = 125/385 (32.47%), Postives = 211/385 (54.81%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSM----SAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKML--ELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            M+KLD+PVD +    +E+RR  E +R  RIF+++ R IGVD   L+QQ+ E+R++E+++ + D       + +D +     K +    +EL + L ++R L QRPE  R+ D+   N   +  P+     +   G +S+Q F GE +  + +   Q +  +R    Q  E+    +  K    L D++ ++ +     L   EE+C++A  +AL +YN+A   ER  +ER +  + E +    + + + SDLLTE+P  +      +  + R++PDR+KGMS +QL  I   ++ QR EK    +LEK R+L   +  Q++ +AR  +  ER +   + +   QL + N +L+++ Q    YLNK++YTN+PTA YF QFNT SR
Sbjct:    1 MFKLDMPVDSRVVQAVERRRAAEAARHERIFSTRSRVIGVDMIVLEQQVAERRNREEVEKQQDLELDTLRVSIDHMVLEQVKEEEQRRRELAQELQQYRALCQRPEDSRDADI---NYKHQGAPSVYLPSEESLGPASMQVFQGEGIGEEEKKRFQMELNERTFRAQREERDRQEKEKKHKDMLRDMELMQRNLIDVQLDALEEECKRAARMALKSYNQAQVDERRERERQEKLRQEGEGMKEVWHMVTSDLLTESPEAAAREGERSAEAPRVLPDRWKGMSPKQLSAIYRQREEQRAEKEAQRQLEKHRELA--WGLQQLEEAREQVEEERRLREMERERRLQLDKYNQQLAQEQQIHQQYLNKQIYTNRPTARYFSQFNTSSR 380

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000000123.1 (pep scaffold:Pmarinus_7.0:GL480403:15296:26482:1 gene:ENSPMAG00000000109.1 transcript:ENSPMAT00000000123.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 79.7221 bits (195), Expect = 5.086e-18
Identity = 47/145 (32.41%), Postives = 83/145 (57.24%), Query Frame = 1

Query:  112 IFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNA 546
            IFN K+R IGVD + L++Q+ ++R +E+ +   +  +A AAIR D+I  L+++RQ ++ + L+++L ++    Q    R +     P G+       V+D+     +S ++ F GEDL    R  +Q++Q +RWL  Q  EK+ A
Sbjct:   26 IFNPKVRTIGVDLDGLNEQVEQRRFREQQEKTREEAFADAAIRHDRIAILLDERQREESRALDRSLAQYWARCQSASDRSQ----PPAGVVGGDSDVVADEGA---VSGLRSFAGEDLEAGERRGLQKEQQRRWLLEQQEEKRRA 163

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Nematostella
Match: EDO49672 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFW4])

HSP 1 Score: 365.54 bits (937), Expect = 8.746e-125
Identity = 201/382 (52.62%), Postives = 270/382 (70.68%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLS---KDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLPVD+KE   IE+RR +E  R+SRIFN+++R IG+D  +L+ Q+ +++ +E  +    + +AA   R D IC LM++RQ  D++ELNK +N FRQ HQRPE  RE++L DP+ LKKDKPARVSDDDPRCGISS+QKF GEDLN K R  +Q +QM+ W++ Q NEK         A  L+DLK  ELDQRAC+L Q+E DCR+AIN A  ++N AL +ER  KE L+ QQ+ DD  T ISN +  D+LTENP+ + SAFG HR+I DR+KGMS  QL +I   QQ+Q  EK    ++E + +  + +  + QA++G+L+ERE+ R++ Q++K  A+EN++LS   K HQE   Y+NKEVYTN PTA YFMQFNT SR
Sbjct:    1 MYKLDLPVDMKETAAIERRRNRELQRQSRIFNARVRTIGIDLQALETQVADRKRQEVEEQRRHNAFAADMKRNDMICALMQQRQEHDIRELNKEVNTFRQEHQRPEDTREWELNDPDCLKKDKPARVSDDDPRCGISSLQKFVGEDLNSKSRRKLQEEQMREWVKQQSNEKNQDKANQSYADYLYDLKARELDQRACELAQAESDCRRAINQATKDFNLALMKERQAKEDLEKQQELDDNMTEISNHVFGDMLTENPDVAQSAFGGHRVITDRWKGMSPAQLAEIRYIQQQQLKEKERLKQEEEEREKEYQRLLLTQAKAGILMERELERKRKQLEKDQAQENLRLSAEQKSHQE---YVNKEVYTNPPTAAYFMQFNTTSR 379

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Nematostella
Match: EDO27826 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T868])

HSP 1 Score: 161.77 bits (408), Expect = 1.037e-48
Identity = 79/140 (56.43%), Postives = 106/140 (75.71%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQ 444
            MYKLDLPVD+KE   IE+RR +E  R+SRIFN+++R IG+D  +L+ Q+ +++ +E  +    + +AA   R D IC LM++RQ  D++ELNK +N FRQ HQRPE  RE++L DP+ LKKDKPARVSDDDPRCGISS+Q
Sbjct:    1 MYKLDLPVDMKETAAIERRRNRELQRQSRIFNARVRTIGIDLQALETQVADRKRQEVEEQRRHNAFAADMKRNDMICALMQQRQEHDIRELNKEVNTFRQEHQRPEDTREWELNDPDCLKKDKPARVSDDDPRCGISSLQ 140

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BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Medaka
Match: ribc1 (RIB43A domain with coiled-coils 1 [Source:NCBI gene;Acc:101166625])

HSP 1 Score: 112.079 bits (279), Expect = 3.977e-27
Identity = 107/385 (27.79%), Postives = 191/385 (49.61%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDP---NGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHR---IIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            M+K D   D      +E RR  E +RK+RIFN+++R +G+D ++L+QQ+ EK  +E L+    +         D+     +  + +  + L K L  +    QR       D  +    NGLK      ++  + + G +S+Q+F GED N K     Q    +R L+ QM+E     E       L   + +  +Q        EE+ RKA  +AL ++N+A   ER    + +H+++E +    + + + SD+LTE  +      G  +   I+PDR+KG+  EQL+     +++Q  +K  + +  +     ++ +++  +R     ER  + +  ++  Q+ + N++L+++      YLNK++YTN+PT DYF QFNT SR
Sbjct:    1 MFKGDARQDQSLTKAVEGRRSAEAARKARIFNTRLRVMGLDLDALNQQVKEKLQQENLEKLQSNALETLKKSQDEALLQQDNNEKEKRRALQKDLTHYWATQQR------LDTQNAGLQNGLKG--AFDITTPEAKLGPASMQRFQGEDANWKQMRREQIRMTERALKGQMDENIRRQERENHKDMLEKQELLHQNQEQLHKAAMEEERRKAARIALHSFNQAQAAERAESLKEQHRREETENLAEMWHTMTSDMLTECADAGERDVGGGKPPQILPDRWKGIRPEQLRSFQRDREQQCQQKQRQCDAGKIQDAAWNLEQLTLSRKAEEEERRKAEKMRELRIQMDQYNMQLAREQSAHQEYLNKKLYTNKPTKDYFYQFNTSSR 377

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Medaka
Match: ribc2 (RIB43A-like with coiled-coils protein 2 [Source:NCBI gene;Acc:101155347])

HSP 1 Score: 103.99 bits (258), Expect = 2.648e-24
Identity = 97/364 (26.65%), Postives = 170/364 (46.70%), Query Frame = 1

Query:  112 IFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDED-DRKTHISNALMSDLLTENPNQSMS---AFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR*KQILLTTKN 1191
            +F+ K+R +GVDT  LD Q+ EK+ +E    +    + A  +   K   +++ RQ      L KAL  FR  +Q+P+ RREFDL DP+  KK         D +  +  +    GED     R   Q++Q++ WL  Q  E   +    +  ++ H+  + E   RA + L  + + RK   +A  NYN A+ +E   K R K Q D D D++T              P +++     F  ++I                       + +K +E+EK +Q  +  ++ R+  AR+ LL+ER  +R   Q+ +QL   N +L++ H++       ++   Q    +F++FNTCSR  ++++  ++
Sbjct:   29 VFDDKLRTMGVDTEVLDAQVQEKKRQEGKAKQEQAAFDADVLHQSKAAAVLQNRQTKQKLALQKALETFRSQNQQPQTRREFDLNDPDSWKK-----TDQSDAQMILPGLV---GEDPTKSSREQRQKEQLREWLIQQQAELDASRSQQEEEEQRHNRSREETLNRAGEHLHLQAERRKEAAVATQNYNLAMIEE---KHRRKQQNDPDYDQETAAVPGFSPSADVRPPPETVQQVIQFQKYQI-----------------------QEKKRIEMEK-KQEDERHERVRLDSARAALLMERRQARLGKQLRQQLDSANGQLAQTHKQ----QKPDIERGQIDESFFLKFNTCSRSVELIILARS 353

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Medaka
Match: ribc2 (RIB43A-like with coiled-coils protein 2 [Source:NCBI gene;Acc:101155347])

HSP 1 Score: 69.3218 bits (168), Expect = 1.137e-12
Identity = 99/354 (27.97%), Postives = 159/354 (44.92%), Query Frame = 1

Query:  112 IFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKT--HISNALMSDLLTENPNQS--MSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            +F+ K+R +GV   +  +  + +   E+   +  H   AAA+        ++ RQ      L KAL  FR  +Q+P+ RREFDL DP+  KK   +      P  G+       GED     R   Q++Q++ WL     ++Q  L+A  R QR H+ K +         LQ+E   RK   +A  NYN A+  ++         QD     T  ++ N   S  L  N  +S  M+      +I  R + + K  L  I   +        +E+EK +Q  +  ++ R+  AR+ LL+ER  +R   Q+ +QL   N +L++ H        K+    Q    +F++FNTCSR
Sbjct:   30 VFDDKLRTMGVSFPASGRTRHLRLLYEQSYADVLHQSKAAAV--------LQNRQTKQKLALQKALETFRSQNQQPQTRREFDLNDPDSWKKTDQSDAQMILP--GLV------GEDPTKSSREQRQKEQLREWL----IQQQAELDAS-RKQR-HNRKHLH--------LQAER--RKEAAVATQNYNLAMVNKKC--------QDFVQVSTCFYLVNFCFSIRLKRNIGESSKMTLI----MIRKRLRCLKKGDLLLISVQR--------IEMEK-KQEDERHERVRLDSARAALLMERRQARLGKQLRQQLDSANGQLAQTH--------KQQSRGQIDESFFLKFNTCSR 322

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Planmine SMEST
Match: SMESG000037028.1 (SMESG000037028.1)

HSP 1 Score: 734.947 bits (1896), Expect = 0.000e+0
Identity = 377/379 (99.47%), Postives = 379/379 (100.00%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTN+LDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQ+EDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEQLQQILDTQQRQRMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR
Sbjct:    1 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNALDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQEEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEQLQQILDTQQRQRMEKMLELEKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDHQEIINYLNKEVYTNQPTADYFMQFNTCSR 379

[Close]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Planmine SMEST
Match: SMESG000071493.1 (SMESG000071493.1)

HSP 1 Score: 390.578 bits (1002), Expect = 2.732e-134
Identity = 219/387 (56.59%), Postives = 288/387 (74.42%), Query Frame = 1

Query:   25 MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQINEKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQLHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGKGRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLLQSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMSDLLTENPNQSMSAFGSHRIIPDRFKGMSKEXXXXXXXXXXXXXMEKMLELEKERQL-KDL----FDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKD---HQEIINYLNKEVYTNQPTADYFMQFNTCSR 1161
            MYKLDLPVD KEA  I  RR +EE R+SRIFNSKIRQIG+D  +L QQ+ +K+ +E ++   +  YAA A+R D I  L+ +RQLDD++ELNK LNEFR LHQ+PE RRE+DLYDP+ LKKDKPARV DDDPRCG++S+QKFDGEDLN K RN  Q+ Q+  W E QM +K+ A +A + A RL+DLK+ E+D+RAC+L  +EE CR+A+N+A S YN AL +E   + RLK+QQ+ DD  T I+NAL SDLLTENP Q++SAFG  RI+PDRFKGM+ EQL++I   Q     E  ++  K RQ+ +DL    +D+QR+AQA++ L++E+E  R+  ++ K +A+EN+ LSK+   HQE   +LN+EVYTNQPTA YFMQFNT SR
Sbjct:    1 MYKLDLPVDQKEAAIINNRRSREEQRQSRIFNSKIRQIGIDKQALAQQVKDKKERECIERNVELAYAADAMRNDSIATLLGRRQLDDIRELNKILNEFRSLHQQPETRREWDLYDPDALKKDKPARVCDDDPRCGLASMQKFDGEDLNNKARNKYQKGQVNDWNERQMADKERAEQAQREADRLYDLKRREMDERACNLAAAEEACRRAMNIANSQYNLALAREMNERARLKNQQENDDTLTAIANALYSDLLTENPAQAISAFGPGRIVPDRFKGMTPEQLKEIFKEQ-----EDQIKDNKRRQMEEDLRNKEWDRQRLAQAKAALVLEKEEERKMLELSKHVADENLCLSKEQKLHQE---FLNREVYTNQPTAAYFMQFNTTSR 379

The following BLAST results are available for this feature:

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Celegans
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Fly
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Zebrafish
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Xenopus
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Mouse
BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Cavefish
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Sea Lamprey
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Yeast
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Nematostella
BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Medaka
BLAST of RIB43A-like with coiled-coils protein 2 vs. Planmine SMEST

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RIBC2	2.913e-78	41.60	RIB43A domain with coiled-coils 2 [Source:HGNC Sym...	[more]
RIBC1	5.520e-47	32.19	RIB43A domain with coiled-coils 1 [Source:HGNC Sym...	[more]
RIBC1	1.898e-25	33.94	RIB43A domain with coiled-coils 1 [Source:HGNC Sym...	[more]
RIBC1	4.385e-25	33.94	RIB43A domain with coiled-coils 1 [Source:HGNC Sym...	[more]
RIBC1	8.573e-6	35.29	RIB43A domain with coiled-coils 1 [Source:HGNC Sym...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
CG7264	3.288e-32	35.71	gene:FBgn0036214 transcript:FBtr0076035	[more]
CG7264	3.288e-32	35.71	gene:FBgn0036214 transcript:FBtr0332130	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ribc2	1.184e-50	36.31	RIB43A domain with coiled-coils 2 [Source:ZFIN;Acc...	[more]
ribc1	8.019e-33	32.56	RIB43A domain with coiled-coils 1 [Source:ZFIN;Acc...	[more]
ribc2	5.213e-22	38.27	RIB43A domain with coiled-coils 2 [Source:ZFIN;Acc...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ribc1	4.860e-104	48.81	RIB43A domain with coiled-coils 1 [Source:NCBI gen...	[more]
RIBC2	2.163e-87	41.69	RIB43A domain with coiled-coils 2 [Source:NCBI gen...	[more]
RIBC2	4.438e-74	40.52	RIB43A domain with coiled-coils 2 [Source:NCBI gen...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Ribc2	1.894e-62	37.57	RIB43A domain with coiled-coils 2 [Source:MGI Symb...	[more]
Ribc1	3.672e-48	35.53	RIB43A domain with coiled-coils 1 [Source:MGI Symb...	[more]
Ribc2	3.964e-33	34.88	RIB43A domain with coiled-coils 2 [Source:MGI Symb...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9H4K1\|RIBC2_HUMAN	1.399e-77	41.60	RIB43A-like with coiled-coils protein 2 OS=Homo sa...	[more]
sp\|Q32LJ7\|RIBC2_BOVIN	1.102e-65	41.55	RIB43A-like with coiled-coils protein 2 OS=Bos tau...	[more]
sp\|Q6AXN9\|RIBC2_RAT	4.063e-64	38.36	RIB43A-like with coiled-coils protein 2 OS=Rattus ...	[more]
sp\|Q9D4Q1\|RIBC2_MOUSE	1.325e-61	37.57	RIB43A-like with coiled-coils protein 2 OS=Mus mus...	[more]
sp\|Q0VC09\|RIBC1_BOVIN	9.723e-52	33.77	RIB43A-like with coiled-coils protein 1 OS=Bos tau...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A504YEC3	1.248e-139	56.84	RIB43A domain with coiled coils 1 OS=Fasciola giga...	[more]
A0A2C9JD92	2.239e-132	54.57	Uncharacterized protein OS=Biomphalaria glabrata O...	[more]
A0A4Z2D3L5	3.269e-131	55.15	RIB43A-like with coiled-coils protein OS=Schistoso...	[more]
A0A3S1AWD9	1.553e-130	53.79	Uncharacterized protein OS=Elysia chlorotica OX=18...	[more]
A0A4E0RID9	2.044e-130	55.00	RIB43A domain with coiled coils 1 OS=Fasciola hepa...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
ribc2	2.976e-37	33.68	RIB43A domain with coiled-coils 2 [Source:NCBI gen...	[more]
ribc1	1.480e-33	32.47	RIB43A domain with coiled-coils 1 [Source:NCBI gen...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000000123.1	5.086e-18	32.41	pep scaffold:Pmarinus_7.0:GL480403:15296:26482:1 g...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO49672	8.746e-125	52.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO27826	1.037e-48	56.43	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
ribc1	3.977e-27	27.79	RIB43A domain with coiled-coils 1 [Source:NCBI gen...	[more]
ribc2	2.648e-24	26.65	RIB43A-like with coiled-coils protein 2 [Source:NC...	[more]
ribc2	1.137e-12	27.97	RIB43A-like with coiled-coils protein 2 [Source:NC...	[more]

BLAST of RIB43A-like with coiled-coils protein 2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000037028.1	0.000e+0	99.47	SMESG000037028.1	[more]
SMESG000071493.1	2.732e-134	56.59	SMESG000071493.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30022421 ID=SMED30022421|Name=RIB43A-like with coiled-coils protein 2|organism=Schmidtea mediterranea sexual|type=transcript|length=1230bp
CTCTTACACTTTCAAATTTTTTAAATGTATAAACTTGATTTACCGGTTGA
TTTGAAAGAAGCAAATCAAATCGAGCAAAGAAGAATTAAAGAAGAAAGTA
GGAAAAGCAGAATTTTCAATAGCAAAATTAGACAAATTGGAGTCGATACT
AATTCTCTTGATCAACAAATTAACGAAAAACGATCCAAAGAAAAATTGCA
AAATGAATTTGACCATTTATACGCTGCTGCTGCAATTAGAATGGATAAAA
TTTGCCAATTGATGGAAAAACGCCAACTAGATGATCTTAAAGAACTCAAT
AAAGCCTTGAATGAGTTTAGACAGTTACATCAAAGACCTGAACAGAGAAG
AGAATTTGATTTGTACGATCCAAACGGTTTGAAGAAAGATAAACCCGCAA
GAGTTTCCGATGACGATCCTCGATGTGGAATTTCAAGCATTCAAAAATTT
GACGGTGAAGATTTGAATGGCAAAGGCCGAAATGCTGTTCAGAGAGATCA
AATGAAGAGATGGTTGGAACTACAAATGAACGAGAAGCAAAATGCACTTG
AAGCTGGAAAGAGAGCACAAAGACTTCATGATTTAAAACAAATTGAGCTC
GATCAAAGAGCCTGTGATTTGTTACAGTCGGAAGAAGATTGCAGGAAAGC
CATTAATCTGGCTTTAAGTAATTACAATGAAGCTTTGCGACAAGAAAGAA
TTGTGAAAGAAAGACTTAAGCATCAACAAGATGAAGACGACAGAAAAACT
CACATAAGCAATGCCTTAATGAGTGATTTGTTAACTGAAAACCCGAACCA
ATCAATGTCGGCATTCGGTAGCCATAGAATCATACCAGACAGATTCAAAG
GAATGTCCAAAGAACAATTGCAACAAATACTCGACACTCAACAGCGTCAA
AGAATGGAAAAAATGCTGGAGCTTGAAAAAGAAAGACAACTTAAAGATTT
GTTTGACAAGCAAAGAATCGCTCAAGCGAGATCGGGATTGTTGATTGAAA
GAGAGATTTCAAGACAAAAAAATCAAATCGACAAACAACTGGCCGAAGAA
AACATCAAATTGTCGAAGGATCATCAAGAAATAATCAACTATTTAAACAA
AGAAGTTTACACCAATCAACCGACTGCCGATTATTTTATGCAATTCAATA
CTTGCAGTCGATAAAAACAAATTCTTTTGACAACAAAAAATCTTTAAGAG
TGAATATTTAAAAAAATAATAAAATTTTAT

protein sequence of SMED30022421-orf-1

>SMED30022421-orf-1 ID=SMED30022421-orf-1|Name=SMED30022421-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=380bp
MYKLDLPVDLKEANQIEQRRIKEESRKSRIFNSKIRQIGVDTNSLDQQIN
EKRSKEKLQNEFDHLYAAAAIRMDKICQLMEKRQLDDLKELNKALNEFRQ
LHQRPEQRREFDLYDPNGLKKDKPARVSDDDPRCGISSIQKFDGEDLNGK
GRNAVQRDQMKRWLELQMNEKQNALEAGKRAQRLHDLKQIELDQRACDLL
QSEEDCRKAINLALSNYNEALRQERIVKERLKHQQDEDDRKTHISNALMS
DLLTENPNQSMSAFGSHRIIPDRFKGMSKEQLQQILDTQQRQRMEKMLEL
EKERQLKDLFDKQRIAQARSGLLIEREISRQKNQIDKQLAEENIKLSKDH
QEIINYLNKEVYTNQPTADYFMQFNTCSR*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0000106	ciliated epithelial cell
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR008805	RIB43A

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **cellular component**
Term	Definition
GO:0005634	nucleus

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..101
None	No IPR available	COILS	Coil	Coil	coord: 214..237
None	No IPR available	COILS	Coil	Coil	coord: 279..299
IPR008805	RIB43A	PFAM	PF05914	RIB43A	coord: 4..379 e-value: 1.4E-130 score: 435.4
IPR008805	RIB43A	PANTHER	PTHR14517	RIB43A-RELATED	coord: 1..379

Main menu

RIB43A-like with coiled-coils protein 2

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Owlery

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