SpoU_sub_bind domain-containing protein

Overview
NameSpoU_sub_bind domain-containing protein
Smed IDSMED30022351
Length (bp)964
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SpoU_sub_bind domain-containing protein (SMED30022351) t-SNE clustered cells

Violin plots show distribution of expression levels for SpoU_sub_bind domain-containing protein (SMED30022351) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SpoU_sub_bind domain-containing protein (SMED30022351) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SpoU_sub_bind domain-containing protein (SMED30022351) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022351

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30022351 SmedASXL_010031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30022351 SmedASXL_010031SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Celegans
Match: Y45F3A.9 (pep chromosome:WBcel235:III:10592754:10595166:-1 gene:WBGene00012864.1 transcript:Y45F3A.9.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y45F3A.9)

HSP 1 Score: 48.9062 bits (115), Expect = 2.207e-6
Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPF 399
            E +FG HSV  A++S KR F+ +F+K  + N  DS  +    EI S      +    +T + L++L  F+ H GI ++ S L F
Sbjct:   43 EALFGLHSVLEAIRSGKRDFHSVFLKKAVENRADS--DARIKEILSRIDELGIQKTLLTDDQLDRLTEFQLHNGICMDASALQF 124
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Match: sp|O94631|MRM1_SCHPO (rRNA methyltransferase 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrm1 PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 1.439e-9
Identity = 35/113 (30.97%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLN-SVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKI--QVTELLNGEQGTIVIVDDIN 477
            E++FG HSVK AL ++KR    ++V+N       ++ ++ F E   + KL   +PI  +    LN++   R H G+VLE S L  P +  +     E  N + G     +D+N
Sbjct:   32 EFVFGTHSVKNALATRKRECRALYVQN-------ADIHSEFEEF--LNKLQYKIPIKSVNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHNDLN 135

HSP 2 Score: 36.5798 bits (83), Expect = 1.439e-9
Identity = 35/143 (24.48%), Postives = 62/143 (43.36%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLENILSLCDVKLCISPSTLYETCGSDLSQSISVGIIL 913
            +G         G  G+++ +       PVVSK S+G+LE+  +  + N +  LR        +IG    L  +  + +T        +N+ K    +LV+ +E+    NIL+ C   + I     Y      L+ S++ GI+L
Sbjct:  161 MGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEPK----ILVLGSEKGLRTNILTQCSHYVSIPGGDKYVDS---LNVSVAAGILL 296
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Match: sp|Q82XD1|RLMB_NITEU (23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) OX=228410 GN=rlmB PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.918e-8
Identity = 33/107 (30.84%), Postives = 50/107 (46.73%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQL 805
            LG C      FGV  V+VP+ +       V K++SG+++ +P F + N  +TLR LKE    I+G T    P  L++ T+     + +     G   L    E C L
Sbjct:  110 LGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVG-TAADAPDTLDSVTLTRPLAWVLGAEDGGMRRL--TREACDL 213

HSP 2 Score: 32.3426 bits (72), Expect = 3.918e-8
Identity = 19/83 (22.89%), Postives = 38/83 (45.78%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNK-NTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRL 393
            +YIFGFH++   L+        I++        D+N+ +    ++ S+A+  S  +     + L K+     HQG+    ++L
Sbjct:    5 QYIFGFHAITSRLRQHPDSIKEIYL--------DTNRHDQRARDLMSLAETTSTRLILCEQDRLCKMTGTTRHQGVAAHVTKL 79
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Match: sp|Q87L11|RLMB_VIBPA (23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=rlmB PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 1.677e-7
Identity = 21/65 (32.31%), Postives = 35/65 (53.85%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIG 679
            LG C       GV  +IVP+ +       VSK++ G+ E++P+ R+ N  +T+R L+E     +G
Sbjct:  110 LGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVG 174

HSP 2 Score: 31.9574 bits (71), Expect = 1.677e-7
Identity = 18/76 (23.68%), Postives = 35/76 (46.05%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIV 375
            E+I+G H+VK  L+ +   F   +V           ++   + I +  ++  V I  +T   L+   +  +HQGI+
Sbjct:    4 EFIYGIHAVKAVLEREPERFIEAYVLK-------GRQDDRLMPILNDLQVCGVSIQQMTRKTLDDKAHGANHQGII 72
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Match: sp|Q7MH13|RLMB_VIBVY (23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=rlmB PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.338e-7
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIG 679
            LG C       GV  VIVP+ K       VSK++ G+ E +P+ R+ N  +T+R L+E    I+G
Sbjct:  110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVG 174

HSP 2 Score: 29.261 bits (64), Expect = 2.338e-7
Identity = 16/76 (21.05%), Postives = 34/76 (44.74%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIV 375
            E+I+G H+V+  L  +   F   +V           ++   + I +  ++  V +  +T   L+   +  +HQGI+
Sbjct:    4 EFIYGIHAVRAVLDKEPERFIEAYVLK-------GRQDDRLMPILNELQMVGVSLQQMTRKTLDDKAHGANHQGII 72
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8DCT8|RLMB_VIBVU (23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio vulnificus (strain CMCP6) OX=216895 GN=rlmB PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.338e-7
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIG 679
            LG C       GV  VIVP+ K       VSK++ G+ E +P+ R+ N  +T+R L+E    I+G
Sbjct:  110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVG 174

HSP 2 Score: 29.261 bits (64), Expect = 2.338e-7
Identity = 16/76 (21.05%), Postives = 34/76 (44.74%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIV 375
            E+I+G H+V+  L  +   F   +V           ++   + I +  ++  V +  +T   L+   +  +HQGI+
Sbjct:    4 EFIYGIHAVRAVLDKEPERFIEAYVLK-------GRQDDRLMPILNELQMVGVSLQQMTRKTLDDKAHGANHQGII 72
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Match: G3MKC5 (SpoU_sub_bind domain-containing protein OS=Amblyomma maculatum OX=34609 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.138e-19
Identity = 39/131 (29.77%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDS-NKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFP----LLDKIQVTELLNGEQGTIVI-VDDIN--IRFGVLLRTCAFF 516
            E +FG H V +AL++++R+ Y ++V     +  +   ++   LEI + AK   + +   + N L +L +  +HQG+ L+ S+LP P    LLDK+   EL   E+  + + +D +   + FG +LR+  +F
Sbjct:   83 ERVFGLHPVLLALRARRRVLYELYVGEGKVSSSEVLQRSPLLLEILNAAKEQGLSVSRCSNNHLKQLCSGGTHQGVCLDASKLPVPLGDSLLDKLDNHELEASERKPLWLYMDRVQDPMNFGAVLRSSCYF 213

HSP 2 Score: 59.6918 bits (143), Expect = 8.138e-19
Identity = 37/143 (25.87%), Postives = 67/143 (46.85%), Query Frame = 2 
Query:  512 FFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKP-SHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLENILSLCDVKLCISPSTLYETCGSDLSQSISVGIILNFIQCVKK 937
            +FGV  V  P +    P P VSK SSG+LE++ M+ +    + L  LK     I+G + F     H           +++    +   ++V    Q  L  + +LCD  +C++P    E+    L+ S++ GI+L+ +   ++
Sbjct:  212 YFGVQKVFAPSIDSCRPSPTVSKASSGALEMMEMYTLQTPAKFLMELKARGWWIVGTSSFSDQVRHGGQDGGAHAPTWDLPPPDRAVMLIVGNEGQGMLPEVSALCDSIICVAPYGGQESPIGSLNVSVAAGIVLHHLSLARQ 354
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Match: L7MLL2 (Putative rrna methylases translation (Fragment) OS=Rhipicephalus pulchellus OX=72859 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.090e-17
Identity = 41/135 (30.37%), Postives = 70/135 (51.85%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNK---NTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLP-------FPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            E++FG H V +AL+++KR+ Y + V  D   L  +N+   +   L+I  +AK   +P+     N L++  +  +HQG+ L+ S+LP          LDK  V E  N  +   + +D I   + FG +LR+  +F
Sbjct:  104 EHVFGLHPVLLALRARKRILYELHV--DEGKLSKANRLEQSPLLLQILDLAKEQELPVSGCPQNRLHQWCSGANHQGVCLDASQLPVLHGETLLGSLDKSDVGE--NPGRPLWLFMDRIQDPMNFGAVLRSSCYF 234

HSP 2 Score: 59.3066 bits (142), Expect = 1.090e-17
Identity = 41/144 (28.47%), Postives = 72/144 (50.00%), Query Frame = 2 
Query:  512 FFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQ--LENILSLCDVKLCISPSTLYETCGSDLSQSISVGIILNFIQCVKK 937
            +FGV  V VP        P VSK SSG+LE++ ++ +N   Q++  LK     I+G + F   +   +H       +++    K   VL++V  + Q     + +LCD  LC++P       GS L+ S++ GI+L+ +   ++
Sbjct:  233 YFGVQKVFVPSKDSCRLSPTVSKASSGALELMDLYILNTPEQSIMELKAKGWWIVGTSSFYDSTRHASHNESLKLTWDLPPPDK--PVLLIVGNEGQGIQSELSALCDSVLCVAPVGEDSPIGS-LNVSVATGIVLHHLSLARQ 373
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Match: A0A224Z663 (Rrna methylases translation OS=Rhipicephalus zambeziensis OX=60191 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.916e-16
Identity = 38/133 (28.57%), Postives = 66/133 (49.62%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDS-NKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLP-------FPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            E++FG H V +AL+++KR+ Y + V     +      ++   L+I  +AK   +P+     N L +  +  +HQG+ L+ S+LP          LDK  V E  N  +   + +D I   + FG +LR+  +F
Sbjct:   84 EHVFGLHPVLLALRARKRILYELHVDEGKLSKAGRLEQSPLLLQILDLAKEQELPVSGCPQNRLQQWCSGANHQGVCLDVSQLPVLPGETLLGSLDKSDVGE--NPGRPLWLFMDRIQDPMNFGAVLRSSCYF 214

HSP 2 Score: 57.3806 bits (137), Expect = 1.916e-16
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 2 
Query:  512 FFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLENILS-LCDVKLCISPSTLYETCGSDLSQSISVGIILNFIQCVKK 937
            +FGV  V VP        P VSK SSG+LE++ ++ +N   Q +  LK     I+G + F   +   +H+      +++    K   +L+V  E   ++  LS LCD  LC++P       GS L+ S++ GI+L+ +   ++
Sbjct:  213 YFGVQKVFVPSKDSCRLSPTVSKASSGALELMDLYVLNTPEQFMMELKAKGWWIVGTSSFYDSTRHASHSESLKLTWDLPPPDK-PVLLIVGNEGLGIQPELSALCDSVLCVAPVGEDSPIGS-LNVSVATGIVLHHLSLAQR 353
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Match: A0A1E1XDW2 (Putative rrna methylase translation (Fragment) OS=Amblyomma aureolatum OX=187763 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.552e-15
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:  148 EYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFL-EIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFP----LLDKIQVTEL-LNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            E +FG H V +AL++++R+ Y ++V     +   S + +  L EI   AK   + +   + + L KL    +HQG+ L+ S+LP P    LL K+   EL  N  +   + +D I   + FG +LR+C +F
Sbjct:   87 ERVFGLHPVLLALRARRRILYELYVSEGKLSSSMSLQQSPLLLEILDAAKEQELTVTRCSQDHLEKLCGGGTHQGVCLDASKLPVPVGDSLLGKLDDRELDTNYGKPLWLYMDRIQDPMNFGAVLRSCCYF 217

HSP 2 Score: 50.447 bits (119), Expect = 1.552e-15
Identity = 35/142 (24.65%), Postives = 65/142 (45.77%), Query Frame = 2 
Query:  512 FFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFL-KPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLENILSLCDVKLCISPSTLYETCGSDLSQSISVGIILNFIQCVK 934
            +FGV  V  P        P VSK SSG+LE++ M+ +    + L  LK     I+G + F  +  H         + +++    +   ++V    Q     + +LCD  +C++P    E+    L+ S++ GI+L+ +   +
Sbjct:  216 YFGVQKVFTPSKDSCRLSPTVSKASSGALELMEMYTLQMPAKFLMELKAKGWWIVGTSSFSNQARHSGQDGGAHTSTWDLPPPDRPALLVVGNEGQGMQPEVSALCDSIICVAPVGGQESPIGSLNVSVATGIVLHHLSLTR 357
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Match: A0A068WWZ8 (Ribosomal RNA methyltransferase, putative OS=Echinococcus granulosus OX=6210 GN=EgrG_000916610 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.744e-15
Identity = 37/136 (27.21%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:   40 SILRLRNYSLPTVKSKVNCNKILKLKNFKEYQNGSIEYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDS---NKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLN 438
            S+L L+   L  + S+ +    +++    +   G  E ++G      AL +K+R+   +FV++D+  L      +KN   L    +A  + + I P++   L  L N RS+QGI ++C+ +P P L  I  + LL+
Sbjct:    2 SLLSLQRRHLRRLVSETSNKSPVEMGTHCKSTQGQSEIVYGIQPTLAALSAKQRVVSCVFVRDDLLQLSSEVLCSKNPWLLAAVQLA--SEIEIKPVSREFLTDLTNGRSNQGIAIKCTPMPMPSLHGISASSLLH 135

HSP 2 Score: 50.447 bits (119), Expect = 1.744e-15
Identity = 37/128 (28.91%), Postives = 64/128 (50.00%), Query Frame = 2 
Query:  485 LGFCYVRVLFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYE--------INKIKKGHN---VLVVVTEQCQL-ENILSLCDV 832
            +G      +FFG+  V++       P P++SK+S+G++E +  FR+ N   TL+ L +A    +G T  ++P  +E   +  C   E        I   K+G     VLV+ +E   L +N+LS C++
Sbjct:  168 MGSILRSAVFFGIPTVLISAFFSATPSPLISKLSAGAMEFLRFFRVTNPASTLKQLSDAGFVTVG-TAGMQPDSME--NLNYCPPLELPLVKPDMIGTSKEGAAKPLVLVLGSEARGLPDNVLSTCNL 292
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Cavefish
Match: mrm1 (mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-229])

HSP 1 Score: 48.1358 bits (113), Expect = 8.699e-12
Identity = 37/141 (26.24%), Postives = 63/141 (44.68%), Query Frame = 1 
Query:  106 LKLKNFKEYQNGSIEY--IFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            LK+K  +    G  E+  +FG     +AL   +R   R+FVKN      +  +      I   A    V I  ++   L+K+ N   HQG+ L+ S L F   +K + T+     +   +++D +   + FG +LR+  F 
Sbjct:  129 LKVKTPQVSPRGGKEHDRVFGVAPCLMALSQDRRKAIRLFVKNS-----EGQQREGVQRICEEALRRGVLIQRVSKRELDKMTNGMVHQGVCLQASPLDFVKEEKSERTQYAGHPRPVWLVLDGVQDPMNFGSILRSAYFL 264

HSP 2 Score: 40.817 bits (94), Expect = 8.699e-12
Identity = 34/120 (28.33%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:  566 PVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGI--TDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLE-NILSLCDVKLCISPSTLYETCGSDLSQSISVGIILN 916
            PVVSK SSG +E+I ++  NN  + + +  +     IG   ++  +P      ++ SC+++ I K      +L++  E   L   +  LCDV L I P +        L+ S++ GI+L+
Sbjct:  281 PVVSKASSGVMELIKVYGYNNLAEMIEVKLKQGWQAIGTVGSEESRPG----VSVVSCSDFRITK----PTLLLMGGEGFGLSPELRQLCDVLLTIPPRSGLHPAVDSLNVSVATGILLH 392
[Close]
BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Cavefish
Match: mrm1 (mitochondrial rRNA methyltransferase 1 [Source:NCBI gene;Acc:111197014])

HSP 1 Score: 48.1358 bits (113), Expect = 8.699e-12
Identity = 37/141 (26.24%), Postives = 63/141 (44.68%), Query Frame = 1 
Query:  106 LKLKNFKEYQNGSIEY--IFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            LK+K  +    G  E+  +FG     +AL   +R   R+FVKN      +  +      I   A    V I  ++   L+K+ N   HQG+ L+ S L F   +K + T+     +   +++D +   + FG +LR+  F 
Sbjct:  129 LKVKTPQVSPRGGKEHDRVFGVAPCLMALSQDRRKAIRLFVKNS-----EGQQREGVQRICEEALRRGVLIQRVSKRELDKMTNGMVHQGVCLQASPLDFVKEEKSERTQYAGHPRPVWLVLDGVQDPMNFGSILRSAYFL 264

HSP 2 Score: 40.817 bits (94), Expect = 8.699e-12
Identity = 34/120 (28.33%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:  566 PVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGI--TDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLE-NILSLCDVKLCISPSTLYETCGSDLSQSISVGIILN 916
            PVVSK SSG +E+I ++  NN  + + +  +     IG   ++  +P      ++ SC+++ I K      +L++  E   L   +  LCDV L I P +        L+ S++ GI+L+
Sbjct:  281 PVVSKASSGVMELIKVYGYNNLAEMIEVKLKQGWQAIGTVGSEESRPG----VSVVSCSDFRITK----PTLLLMGGEGFGLSPELRQLCDVLLTIPPRSGLHPAVDSLNVSVATGILLH 392
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Cavefish
Match: mrm1 (mitochondrial rRNA methyltransferase 1 [Source:NCBI gene;Acc:111197014])

HSP 1 Score: 47.7506 bits (112), Expect = 1.881e-10
Identity = 37/141 (26.24%), Postives = 63/141 (44.68%), Query Frame = 1 
Query:  106 LKLKNFKEYQNGSIEY--IFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            LK+K  +    G  E+  +FG     +AL   +R   R+FVKN      +  +      I   A    V I  ++   L+K+ N   HQG+ L+ S L F   +K + T+     +   +++D +   + FG +LR+  F 
Sbjct:  129 LKVKTPQVSPRGGKEHDRVFGVAPCLMALSQDRRKAIRLFVKNS-----EGQQREGVQRICEEALRRGVLIQRVSKRELDKMTNGMVHQGVCLQASPLDFVKEEKSERTQYAGHPRPVWLVLDGVQDPMNFGSILRSAYFL 264

HSP 2 Score: 36.5798 bits (83), Expect = 1.881e-10
Identity = 32/116 (27.59%), Postives = 56/116 (48.28%), Query Frame = 2 
Query:  566 PVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGI--TDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLE-NILSLCDVKLCISPSTLYETCGSDLSQSISVG 904
            PVVSK SSG +E+I ++  NN  + + +  +     IG   ++  +P      ++ SC+++ I K      +L++  E   L   +  LCDV L I P +        L+ S++ G
Sbjct:  281 PVVSKASSGVMELIKVYGYNNLAEMIEVKLKQGWQAIGTVGSEESRPG----VSVVSCSDFRITKP----TLLLMGGEGFGLSPELRQLCDVLLTIPPRSGLHPAVDSLNVSVATG 388
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Cavefish
Match: mrm1 (mitochondrial rRNA methyltransferase 1 [Source:NCBI gene;Acc:111197014])

HSP 1 Score: 47.7506 bits (112), Expect = 5.287e-10
Identity = 37/141 (26.24%), Postives = 63/141 (44.68%), Query Frame = 1 
Query:  106 LKLKNFKEYQNGSIEY--IFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQGTIVIVDDIN--IRFGVLLRTCAFF 516
            LK+K  +    G  E+  +FG     +AL   +R   R+FVKN      +  +      I   A    V I  ++   L+K+ N   HQG+ L+ S L F   +K + T+     +   +++D +   + FG +LR+  F 
Sbjct:  119 LKVKTPQVSPRGGKEHDRVFGVAPCLMALSQDRRKAIRLFVKNS-----EGQQREGVQRICEEALRRGVLIQRVSKRELDKMTNGMVHQGVCLQASPLDFVKEEKSERTQYAGHPRPVWLVLDGVQDPMNFGSILRSAYFL 254

HSP 2 Score: 35.039 bits (79), Expect = 5.287e-10
Identity = 29/100 (29.00%), Postives = 50/100 (50.00%), Query Frame = 2 
Query:  566 PVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGI--TDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLE-NILSLCDVKLCISPST 856
            PVVSK SSG +E+I ++  NN  + + +  +     IG   ++  +P      ++ SC+++ I K      +L++  E   L   +  LCDV L I P +
Sbjct:  271 PVVSKASSGVMELIKVYGYNNLAEMIEVKLKQGWQAIGTVGSEESRPG----VSVVSCSDFRITK----PTLLLMGGEGFGLSPELRQLCDVLLTIPPRS 362
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Medaka
Match: mrm1 (mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-229])

HSP 1 Score: 37.3502 bits (85), Expect = 6.017e-7
Identity = 24/96 (25.00%), Postives = 44/96 (45.83%), Query Frame = 1 
Query:  112 LKNFKEYQNGSIEYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPF 399
            LK+ +  +    E +FG     +AL   +R   R+FVK    +L       + L++   A    VP+  ++   L+++ +   HQG+ L  S L +
Sbjct:   36 LKSTQAIKMEPSEIVFGVSPCFLALTQGRRKASRLFVKAGEASL-----RASVLKVCEEAHQQGVPVSRVSKKDLDRMSSGGVHQGVCLAASPLGY 126

HSP 2 Score: 35.039 bits (79), Expect = 6.017e-7
Identity = 33/144 (22.92%), Postives = 66/144 (45.83%), Query Frame = 2 
Query:  500 VRVLFFGVIGVIVPQMKFGIPF-PVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHT---IESCTNYEINKIKKGHNVLVVVTEQCQLE-NILSLCDVKLCISPSTLYETCGSDLSQSISVGIILN 916
            +R  +F  +  ++  ++   P  PVVSK SSG++E++ ++   N  + L++      +++G        H    +   +  C  ++I K      +L++  E   L   +LSLC   L I+           L+ S++ GI+L+
Sbjct:  158 LRSAYFLGVDRVISSLRHSCPLSPVVSKASSGAMEVMGVYGCENLEEMLKLKLAQGWHVVGTV-----GHQAVDSNIRVTQCLEFQITK----PTLLLMGGEGHGLSAELLSLCQTFLSITAGKELPPGIESLNVSVAAGILLH 292
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BLAST of SpoU_sub_bind domain-containing protein vs. Planmine SMEST
Match: SMESG000034779.1 (SMESG000034779.1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.801e-32
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1 
Query:   94 CNKILKLKNFKEYQNGSIEYIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLNSVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQGTIVIVDDI--NIRFGVLLRTCAFFW 519
            CNK  KLKN       + EY+FG  SVK ALQ KKRLFY++F+ N      DS+   + LEI+ +AK  ++ +  +T   L+       +QG++L+CS+LP P  D   +T     + G  V +D++  N+ FG LLR+  +F 
Sbjct:   38 CNKKDKLKNV------NAEYLFGVRSVKAALQIKKRLFYQLFLINCNLKSVDSHHYEDILEIHELAKSLNLSVVKVTKEFLDIKSKMLPNQGVLLKCSKLPVPEFDDNYLTT-CKRKSGLHVFLDELKDNMNFGNLLRSSLYFG 174

HSP 2 Score: 77.411 bits (189), Expect = 2.801e-32
Identity = 53/143 (37.06%), Postives = 83/143 (58.04%), Query Frame = 2 
Query:  509 LFFGVIGVIVPQMKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFLKPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQL-ENILSLCDVKLCI---SPSTLYETCGSDLSQSISVGIILNFIQ 925
            L+FGV+ + +P      P P+VS++S G++EIIP+F+  +KIQ L+ LKE N  IIG +     +  +T  I++ T  E N +K  HNVLV+ +E   + + I +LCD+   I        Y  C   L+ S + GI+LNF++
Sbjct:  171 LYFGVLSIFLPIGSTCSPSPLVSRISDGAMEIIPIFKQRDKIQLLQKLKEENFCIIGTSGNDYVADKKTVDIDNITAAEENLMKGRHNVLVLGSEGPGITDEIGALCDIMFKIPNYGKQNEYMNC---LNVSTATGIMLNFLR 310
The following BLAST results are available for this feature:
BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Y45F3A.92.207e-634.52pep chromosome:WBcel235:III:10592754:10595166:-1 g... [more]
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O94631|MRM1_SCHPO1.439e-930.97rRNA methyltransferase 1, mitochondrial OS=Schizos... [more]
sp|Q82XD1|RLMB_NITEU3.918e-830.8423S rRNA (guanosine-2'-O-)-methyltransferase RlmB ... [more]
sp|Q87L11|RLMB_VIBPA1.677e-732.3123S rRNA (guanosine-2'-O-)-methyltransferase RlmB ... [more]
sp|Q7MH13|RLMB_VIBVY2.338e-736.9223S rRNA (guanosine-2'-O-)-methyltransferase RlmB ... [more]
sp|Q8DCT8|RLMB_VIBVU2.338e-736.9223S rRNA (guanosine-2'-O-)-methyltransferase RlmB ... [more]
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BLAST of SpoU_sub_bind domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G3MKC58.138e-1929.77SpoU_sub_bind domain-containing protein OS=Amblyom... [more]
L7MLL21.090e-1730.37Putative rrna methylases translation (Fragment) OS... [more]
A0A224Z6631.916e-1628.57Rrna methylases translation OS=Rhipicephalus zambe... [more]
A0A1E1XDW21.552e-1531.30Putative rrna methylase translation (Fragment) OS=... [more]
A0A068WWZ81.744e-1527.21Ribosomal RNA methyltransferase, putative OS=Echin... [more]
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
mrm18.699e-1226.24mitochondrial rRNA methyltransferase 1 homolog (S.... [more]
mrm18.699e-1226.24mitochondrial rRNA methyltransferase 1 [Source:NCB... [more]
mrm11.881e-1026.24mitochondrial rRNA methyltransferase 1 [Source:NCB... [more]
mrm15.287e-1026.24mitochondrial rRNA methyltransferase 1 [Source:NCB... [more]
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SpoU_sub_bind domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrm16.017e-725.00mitochondrial rRNA methyltransferase 1 homolog (S.... [more]
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BLAST of SpoU_sub_bind domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000034779.12.801e-3237.50SMESG000034779.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022351 ID=SMED30022351|Name=SpoU_sub_bind domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=964bp
TTTTTATGTATGAGCACATTTTTAAATATTTTGAAAAACAGTATTTTACG
TTTAAGGAATTATTCTCTTCCAACAGTAAAATCTAAAGTTAATTGTAACA
AAATTTTGAAATTAAAAAATTTTAAAGAATATCAAAATGGGTCTATTGAA
TATATATTTGGCTTTCACTCGGTAAAAATTGCCTTGCAGTCCAAGAAACG
ATTGTTTTATCGTATCTTTGTTAAAAATGATATATTCAATTTGCCGGATT
CTAATAAGAACACAAATTTCTTGGAAATATACAGTATTGCGAAGTTAAAT
AGTGTTCCAATATTCCCAATTACTCTAAACGCTTTGAACAAGTTGGTAAA
TTTTAGATCTCATCAAGGTATCGTTTTAGAATGTTCCAGACTTCCATTTC
CACTACTCGATAAAATTCAAGTAACAGAATTATTAAATGGTGAACAAGGA
ACGATAGTGATAGTTGATGATATAAATATAAGGTTTGGGGTTTTGTTACG
TACGTGTGCTTTTTTTTGGAGTTATTGGAGTAATCGTACCACAAATGAAA
TTTGGTATTCCGTTTCCAGTAGTTAGTAAAATGAGTTCAGGATCTCTGGA
AATTATTCCGATGTTTCGAATCAATAATAAAATCCAAACTCTCCGAATGC
TGAAAGAAGCAAATTGTAACATTATTGGAATTACAGATTTTTTGAAACCC
TCTCATCTCGAAACTCATACAATTGAGTCCTGTACAAATTATGAGATTAA
TAAAATTAAAAAAGGTCATAATGTTTTGGTTGTGGTGACGGAACAGTGTC
AATTAGAGAATATATTATCACTATGTGATGTCAAGTTATGCATTTCTCCT
TCGACTCTCTATGAAACCTGTGGCAGTGATTTAAGTCAATCAATTAGTGT
AGGAATTATTTTGAATTTTATTCAATGTGTTAAAAAGTATAATAAATTTT
TGTGTTGAAAAAAA
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protein sequence of SMED30022351-orf-1

>SMED30022351-orf-1 ID=SMED30022351-orf-1|Name=SMED30022351-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=138bp
MKFGIPFPVVSKMSSGSLEIIPMFRINNKIQTLRMLKEANCNIIGITDFL
KPSHLETHTIESCTNYEINKIKKGHNVLVVVTEQCQLENILSLCDVKLCI
SPSTLYETCGSDLSQSISVGIILNFIQCVKKYNKFLC*
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protein sequence of SMED30022351-orf-2

>SMED30022351-orf-2 ID=SMED30022351-orf-2|Name=SMED30022351-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=192bp
FLCMSTFLNILKNSILRLRNYSLPTVKSKVNCNKILKLKNFKEYQNGSIE
YIFGFHSVKIALQSKKRLFYRIFVKNDIFNLPDSNKNTNFLEIYSIAKLN
SVPIFPITLNALNKLVNFRSHQGIVLECSRLPFPLLDKIQVTELLNGEQG
TIVIVDDINIRFGVLLRTCAFFWSYWSNRTTNEIWYSVSSS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR013123SpoU_subst-bd
IPR029064L30e-like
IPR001537SpoU_MeTrfase
IPR029026tRNA_m1G_MTases_N
IPR029028Alpha/beta_knot_MTases
Vocabulary: molecular function
TermDefinition
GO:0008168methyltransferase activity
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
GO:0016740transferase activity
Vocabulary: biological process
TermDefinition
GO:0006396RNA processing
GO:0001510RNA methylation
GO:0032259methylation
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013123RNA 2-O ribose methyltransferase, substrate bindingSMARTSM00967SpoU_sub_bind_2coord: 51..134
e-value: 1.8E-8
score: 44.1
IPR013123RNA 2-O ribose methyltransferase, substrate bindingPFAMPF08032SpoU_sub_bindcoord: 51..133
e-value: 2.5E-11
score: 43.7
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 42..129
e-value: 8.1E-10
score: 40.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILYSSF55315L30e-likecoord: 44..129
NoneNo IPR availablePANTHERPTHR46103FAMILY NOT NAMEDcoord: 39..181
NoneNo IPR availablePANTHERPTHR46103:SF1RRNA METHYLTRANSFERASE 1, MITOCHONDRIALcoord: 39..181
NoneNo IPR availableCDDcd18103SpoU-like_RlmBcoord: 152..181
e-value: 0.00240754
score: 34.6672