Translocon-associated protein, gamma subunit
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30022331 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Homology
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Match: SSR3 (signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]) HSP 1 Score: 187.578 bits (475), Expect = 4.197e-59 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Match: SSR3 (signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]) HSP 1 Score: 177.563 bits (449), Expect = 5.263e-55 Identity = 102/190 (53.68%), Postives = 145/190 (76.32%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDR-------------ILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+R ILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERFDSCLKYGHHKRGILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 197
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Match: SSR3 (signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]) HSP 1 Score: 172.555 bits (436), Expect = 2.343e-53 Identity = 79/128 (61.72%), Postives = 107/128 (83.59%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTT 452 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TT Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATT 135
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Match: SSR3 (signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]) HSP 1 Score: 122.479 bits (306), Expect = 1.873e-34 Identity = 71/132 (53.79%), Postives = 107/132 (81.06%), Query Frame = 3 Query: 210 MDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 1 MDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 132
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Match: SSR3 (signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]) HSP 1 Score: 122.479 bits (306), Expect = 1.873e-34 Identity = 71/132 (53.79%), Postives = 107/132 (81.06%), Query Frame = 3 Query: 210 MDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 1 MDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 132
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Celegans
Match: trap-3 (TRanslocon-Associated Protein [Source:UniProtKB/TrEMBL;Acc:Q95XS1]) HSP 1 Score: 134.42 bits (337), Expect = 7.635e-39 Identity = 79/174 (45.40%), Postives = 121/174 (69.54%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTG 596 KL+KEEE+LL +S + STK + FY NA I+SI P++LF+ +H M+I V + + ++ +AYL+++A KN K +LKH+I +KR A+ RE++ ++ DKK+T KEK++R L++KNEVAD EST S+ NSL++ I+L+S+F +L N A + N +S +A LVA ST Sbjct: 3 KLTKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGTAYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRKNEVADTESTYLSVFYTNSLYLTIMLVSAFFLLANVAPVFNLLISTIGSAGLVAFLSTA 176
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Fly
Match: CG5885 (gene:FBgn0025700 transcript:FBtr0445309) HSP 1 Score: 202.986 bits (515), Expect = 1.734e-65 Identity = 105/174 (60.34%), Postives = 142/174 (81.61%), Query Frame = 3 Query: 78 LSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 +KEEE+LLQDFSR+VSTKSSALFYGNAFIVS +PIWLFWRIH+MD+ ++ F++ + S YL+A AYKN KF LKHKIA +RE+A+ RE+N++ GDDKK+TRKEKD+RILWKKNEVAD+E+TTFSI NN++++ +++ SF +L+N +NY S+G A+ ++LFST + Sbjct: 14 FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIWLFWRIHNMDLWPSSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEAVTREVNRQVGDDKKVTRKEKDERILWKKNEVADYEATTFSIFYNNAIYLAVIIFISFFILKNSTPFINYIFSVGIASGALSLFSTSA 187
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Fly
Match: CG5885 (gene:FBgn0025700 transcript:FBtr0079900) HSP 1 Score: 202.986 bits (515), Expect = 1.734e-65 Identity = 105/174 (60.34%), Postives = 142/174 (81.61%), Query Frame = 3 Query: 78 LSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 +KEEE+LLQDFSR+VSTKSSALFYGNAFIVS +PIWLFWRIH+MD+ ++ F++ + S YL+A AYKN KF LKHKIA +RE+A+ RE+N++ GDDKK+TRKEKD+RILWKKNEVAD+E+TTFSI NN++++ +++ SF +L+N +NY S+G A+ ++LFST + Sbjct: 14 FTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAVPIWLFWRIHNMDLWPSSILFVLVTAASTYLMATAYKNIKFQLKHKIAGRREEAVTREVNRQVGDDKKVTRKEKDERILWKKNEVADYEATTFSIFYNNAIYLAVIIFISFFILKNSTPFINYIFSVGIASGALSLFSTSA 187
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Zebrafish
Match: ssr3 (signal sequence receptor, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-9134]) HSP 1 Score: 187.193 bits (474), Expect = 3.041e-59 Identity = 103/177 (58.19%), Postives = 144/177 (81.36%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KS+ALFYGNA IVS +PIWLFWRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+L+V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLYAVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLLLVIVASFFLLKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Zebrafish
Match: ssr3 (signal sequence receptor, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-9134]) HSP 1 Score: 187.193 bits (474), Expect = 3.041e-59 Identity = 103/177 (58.19%), Postives = 144/177 (81.36%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KS+ALFYGNA IVS +PIWLFWRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+L+V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLYAVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLLLVIVASFFLLKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Zebrafish
Match: ssr3 (signal sequence receptor, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-9134]) HSP 1 Score: 172.555 bits (436), Expect = 8.482e-54 Identity = 79/128 (61.72%), Postives = 106/128 (82.81%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTT 452 K EE++LLQDFSR++S KS+ALFYGNA IVS +PIWLFWRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TT Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLYAVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATT 135
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Xenopus
Match: ssr3 (signal sequence receptor, gamma (translocon-associated protein gamma) [Source:NCBI gene;Acc:448655]) HSP 1 Score: 192.2 bits (487), Expect = 4.926e-61 Identity = 105/177 (59.32%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALFYGNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA++RE+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +A+ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFYGNAFIVSAIPIWLYWRIWHMDLVQSAVLYTVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSREVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFLLKNFNPTVNYILSISAASGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Xenopus
Match: ssr3 (signal sequence receptor, gamma (translocon-associated protein gamma) [Source:NCBI gene;Acc:448655]) HSP 1 Score: 176.022 bits (445), Expect = 8.295e-55 Identity = 81/128 (63.28%), Postives = 107/128 (83.59%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTT 452 K EE++LLQDFSR++S KSSALFYGNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA++RE+ +K D++K++RKEKD+RILWKKNEVAD+E+TT Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFYGNAFIVSAIPIWLYWRIWHMDLVQSAVLYTVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSREVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATT 135
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Mouse
Match: Ssr3 (signal sequence receptor, gamma [Source:MGI Symbol;Acc:MGI:1914687]) HSP 1 Score: 187.193 bits (474), Expect = 3.699e-59 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Mouse
Match: Ssr3 (signal sequence receptor, gamma [Source:MGI Symbol;Acc:MGI:1914687]) HSP 1 Score: 172.17 bits (435), Expect = 2.413e-53 Identity = 79/128 (61.72%), Postives = 107/128 (83.59%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTT 452 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TT Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATT 135
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Match: sp|Q5RCD7|SSRG_PONAB (Translocon-associated protein subunit gamma OS=Pongo abelii OX=9601 GN=SSR3 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 1.694e-58 Identity = 102/179 (56.98%), Postives = 146/179 (81.56%), Query Frame = 3 Query: 69 NMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 + K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 6 SCKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Match: sp|Q9UNL2|SSRG_HUMAN (Translocon-associated protein subunit gamma OS=Homo sapiens OX=9606 GN=SSR3 PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 2.015e-58 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Match: sp|Q08013|SSRG_RAT (Translocon-associated protein subunit gamma OS=Rattus norvegicus OX=10116 GN=Ssr3 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 2.587e-58 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Match: sp|Q9DCF9|SSRG_MOUSE (Translocon-associated protein subunit gamma OS=Mus musculus OX=10090 GN=Ssr3 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.587e-58 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Match: sp|Q3SZ87|SSRG_BOVIN (Translocon-associated protein subunit gamma OS=Bos taurus OX=9913 GN=SSR3 PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 3.358e-58 Identity = 102/177 (57.63%), Postives = 145/177 (81.92%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Match: A0A3S1BPZ9 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_003525 PE=4 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.463e-72 Identity = 120/175 (68.57%), Postives = 154/175 (88.00%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 KLS+EEE+LLQDFSR+VSTKSSALFYGNAFIVS +P+WLFWRIH MD+ AV F+IG++IS YLVA+AYKN KFILKHKIA+KREDA+ REM KK DDK++T+KEKD+R+LWKKNEVAD+E+TTFSI NN+L++++++++SF +L+N + NY+LS+GSAA L+ALFST S Sbjct: 8 KLSREEELLLQDFSRNVSTKSSALFYGNAFIVSAIPMWLFWRIHQMDLYQSAVFFVIGTLISTYLVALAYKNVKFILKHKIALKREDAVAREMMKKLADDKRMTKKEKDERVLWKKNEVADYEATTFSIFYNNALYLVLLIVASFFILKNFNPVFNYSLSVGSAAGLLALFSTSS 182
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Match: A0A1W4WVP4 (translocon-associated protein subunit gamma OS=Agrilus planipennis OX=224129 GN=LOC108736603 PE=4 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 9.616e-70 Identity = 121/174 (69.54%), Postives = 146/174 (83.91%), Query Frame = 3 Query: 78 LSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 +KEEE+LLQDFSR+VSTKSSALFYGNA IVS +PIWLFWRIH MDIMS V F++ +IIS YL+AMAY+NTKF LKHKIAVKREDA+ RE+ KK +DKK+++KEKD+RILWKKNEVADFE+TTFSI NN+LF+ +V+ SF VLR+ L NY LS+G+ A L+AL STGS Sbjct: 10 FTKEEELLLQDFSRNVSTKSSALFYGNAIIVSAVPIWLFWRIHMMDIMSSLVLFVVVTIISTYLMAMAYRNTKFNLKHKIAVKREDAVTRELTKKLAEDKKMSKKEKDERILWKKNEVADFEATTFSIFYNNALFLALVIFVSFYVLRSFTLAFNYTLSVGATAGLLALLSTGS 183
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Match: K1QJW6 (Translocon-associated protein subunit gamma OS=Crassostrea gigas OX=29159 GN=CGI_10026012 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 2.594e-69 Identity = 114/174 (65.52%), Postives = 146/174 (83.91%), Query Frame = 3 Query: 78 LSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 L+KEEE+LLQDFSR+VSTKSSALFYGNA IVS +PIWLFWRIH MD+ + F +G+++S YLVA AYKN KF+LKHKIA KREDA+ REM KKF DDKK+TRKE+D+RILWKKNEVAD+E+TTFSI NN+ +++++++ SF VL+N + + NY +S+G AA L+ALFST + Sbjct: 12 LTKEEELLLQDFSRNVSTKSSALFYGNALIVSAIPIWLFWRIHQMDLYQSGILFAVGTLVSTYLVAFAYKNVKFVLKHKIAQKREDAVTREMTKKFSDDKKMTRKERDERILWKKNEVADYEATTFSIFYNNAFYLVLLILCSFYVLKNFSPMFNYLMSVGLAAGLLALFSTSN 185
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Match: A0A210PKY7 (Translocon-associated protein subunit gamma OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT21335 PE=4 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 3.798e-69 Identity = 116/174 (66.67%), Postives = 147/174 (84.48%), Query Frame = 3 Query: 78 LSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 L+KEEE+LLQDFSR+VSTKSSALFYGNA IVS +PIWLFWRIH MD+ + F +G+IIS YLVA+AYKN KF+LKHKIA+KREDA++REM KKF DDK++T+KEKD+RILWKKNEVAD+E+TTFSI NN+ ++++++I+SF VLR+ NY S+G AA L+ALFST + Sbjct: 11 LTKEEELLLQDFSRNVSTKSSALFYGNALIVSAVPIWLFWRIHQMDLYQSGILFAVGTIISTYLVALAYKNVKFVLKHKIALKREDAVSREMTKKFADDKRMTKKEKDERILWKKNEVADYEATTFSIFYNNAFYLVLLVIASFYVLRSINPTFNYLCSVGLAAGLLALFSTST 184
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Match: A0A293N222 (Translocon-associated protein, gamma subunit (Fragment) OS=Ornithodoros erraticus OX=265619 PE=4 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 4.618e-69 Identity = 117/180 (65.00%), Postives = 152/180 (84.44%), Query Frame = 3 Query: 60 MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 MA KL+KEEE+LLQDFSR+VSTKSSALFYGNAFIVS +PIWLFWRIH MD+ A+ F + +++S +L+A+AYKN KF+LKHK+A KREDA+NRE+ KK DDKK+++KEKD+RILWKKNEVAD+E+TTFSI NN+LF+ +++++SF +LR + LNY LS+G A+ L+ALFSTGS Sbjct: 1 MAVGKKLTKEEELLLQDFSRNVSTKSSALFYGNAFIVSSIPIWLFWRIHQMDLYQSAIIFAVMTLVSTWLIALAYKNVKFVLKHKVAQKREDAVNREIMKKLSDDKKMSKKEKDERILWKKNEVADYEATTFSIFYNNALFLTLIIVTSFYLLRAFSPSLNYLLSVGCASGLLALFSTGS 180
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Cavefish
Match: ssr3 (signal sequence receptor subunit 3 [Source:NCBI gene;Acc:103046287]) HSP 1 Score: 187.193 bits (474), Expect = 2.751e-59 Identity = 102/177 (57.63%), Postives = 144/177 (81.36%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KS+ALFYGNA IVS +PIWLFWRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+++SF +L+N +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLYAVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIVASFFLLKNFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Sea Lamprey
Match: ssr3 (signal sequence receptor, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-9134]) HSP 1 Score: 193.356 bits (490), Expect = 2.163e-62 Identity = 109/173 (63.01%), Postives = 142/173 (82.08%), Query Frame = 3 Query: 81 SKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFST 593 + EEE+LLQDFSRSVSTKS+ALFYGNAFIVS +PIWL+WRI MD+ AV F + +I S +LVAMAYKN KFILKHK+ KREDA+ RE+ +K D+KK+++KEKD+RILWKKNEVAD+E+TTFSI NN+LF+++++++SF +L+N +NY LSMGS+A L+AL ST Sbjct: 11 ASEEELLLQDFSRSVSTKSAALFYGNAFIVSAIPIWLYWRIWQMDLFQSAVLFGVMTIASTWLVAMAYKNMKFILKHKVVQKREDAVAREVLRKLPEADNKKMSKKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLIIVASFFLLKNFNPTVNYILSMGSSAGLIALLST 183
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Nematostella
Match: EDO39583 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9J2]) HSP 1 Score: 185.652 bits (470), Expect = 4.804e-59 Identity = 106/180 (58.89%), Postives = 136/180 (75.56%), Query Frame = 3 Query: 60 MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 MAN KLSKE+E+LLQ+FSRSVSTKSS LFY NA IVS +P+WLFWRIH MD S + F + +++S +LVA AYKN KF LKHKIA +R+ AI +E+N++ +KKLTR+EKD+RILWKKN+VAD E+ TFSI NN+L++ +VL +SF LR+ NY LS A ++AL STGS Sbjct: 1 MANGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAVMTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDERILWKKNKVADMEAMTFSIFYNNALYLFLVLFASFYALRSLHPSANYLLSTSVAGGILALLSTGS 180
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Medaka
Match: ssr3 (signal sequence receptor subunit 3 [Source:NCBI gene;Acc:101174039]) HSP 1 Score: 184.882 bits (468), Expect = 2.249e-58 Identity = 102/177 (57.63%), Postives = 144/177 (81.36%), Query Frame = 3 Query: 75 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 599 K EE++LLQDFSR++S KS+ALFYGNA IVS +PIWLFWRI MD++ AV + + +++S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K++RKEKD+RILWKKNEVAD+E+TTFSI NN+LF+++V+I+SF +L++ +NY LS+ +++ L+AL STGS Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSTALFYGNALIVSAIPIWLFWRIWHMDLVQSAVLYAVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNEVADYEATTFSIFYNNTLFLVLVIIASFFLLKSFNPTVNYILSISASSGLIALLSTGS 184
BLAST of Translocon-associated protein, gamma subunit vs. Planmine SMEST
Match: SMESG000066628.1 (SMESG000066628.1) HSP 1 Score: 322.013 bits (824), Expect = 1.463e-112 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 3 Query: 60 MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGSVNKQ 611 MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTFSILLNNSLFILIVLISSFVVLRNQALLLNYALSMGSAAALVALFSTGSVNKQ Sbjct: 1 MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTFSILLNNSLFILIVLISSFVVLRNQALLLNYALSMGSAAALVALFSTGSVNKQ 184
BLAST of Translocon-associated protein, gamma subunit vs. Planmine SMEST
Match: SMESG000066628.1 (SMESG000066628.1) HSP 1 Score: 313.923 bits (803), Expect = 2.108e-109 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 3 Query: 72 MKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGSVNKQ 611 MKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTFSILLNNSLFILIVLISSFVVLRNQALLLNYALSMGSAAALVALFSTGSVNKQ Sbjct: 1 MKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSHAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLTRKEKDDRILWKKNEVADFESTTFSILLNNSLFILIVLISSFVVLRNQALLLNYALSMGSAAALVALFSTGSVNKQ 180 The following BLAST results are available for this feature:
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Translocon-associated protein, gamma subunit vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Translocon-associated protein, gamma subunit vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Translocon-associated protein, gamma subunit vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Translocon-associated protein, gamma subunit vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30022331 ID=SMED30022331|Name=Translocon-associated protein, gamma subunit|organism=Schmidtea mediterranea sexual|type=transcript|length=814bpback to top protein sequence of SMED30022331-orf-1 >SMED30022331-orf-1 ID=SMED30022331-orf-1|Name=SMED30022331-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=185bp MANNMKLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|