COesterase domain-containing protein

Overview
NameCOesterase domain-containing protein
Smed IDSMED30022312
Length (bp)1573
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of COesterase domain-containing protein (SMED30022312) t-SNE clustered cells

Violin plots show distribution of expression levels for COesterase domain-containing protein (SMED30022312) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of COesterase domain-containing protein (SMED30022312) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for COesterase domain-containing protein (SMED30022312) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022312

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parapharyngeal regionSMED30022312h1SMcG0010138 SmedASXL_000747SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
pharynxSMED30022312h1SMcG0010138 dd_Smed_v4_18958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30022312h1SMcG0010138 dd_Smed_v4_18958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022312h1SMcG0010138 dd_Smed_v4_18958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 2 cellSMED30022312h1SMcG0010138 dd_Smed_v4_18958_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of COesterase domain-containing protein vs. Ensembl Fly
Match: CG14763 (gene:FBgn0033243 transcript:FBtr0088875)

HSP 1 Score: 48.1358 bits (113), Expect = 4.707e-6
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:  835 KPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            KP ++F PTY LE K  N ++   + +II+  +       + +   +   +   +S++ KN+IK  ++   RY+ +V   V E   Q      + L     D +V+YS E+ S+  +    +LYYD
Sbjct:   68 KPTMRFMPTYRLESK--NPLNKERVENIIKAVMNRHYNDEYMFHPKHSLHMAAQVSEEIKNRIK--LDNYDRYRYIVLVTVGEFLMQGLYSMVNFLWDAEKDGFVTYSVERPSYFAVCTTFYLYYD 189
[Close]
BLAST of COesterase domain-containing protein vs. Ensembl Fly
Match: CG14763 (gene:FBgn0033243 transcript:FBtr0339127)

HSP 1 Score: 48.1358 bits (113), Expect = 4.707e-6
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:  835 KPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            KP ++F PTY LE K  N ++   + +II+  +       + +   +   +   +S++ KN+IK  ++   RY+ +V   V E   Q      + L     D +V+YS E+ S+  +    +LYYD
Sbjct:   68 KPTMRFMPTYRLESK--NPLNKERVENIIKAVMNRHYNDEYMFHPKHSLHMAAQVSEEIKNRIK--LDNYDRYRYIVLVTVGEFLMQGLYSMVNFLWDAEKDGFVTYSVERPSYFAVCTTFYLYYD 189
[Close]
BLAST of COesterase domain-containing protein vs. Ensembl Fly
Match: CG14763 (gene:FBgn0033243 transcript:FBtr0339126)

HSP 1 Score: 48.1358 bits (113), Expect = 4.707e-6
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:  835 KPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            KP ++F PTY LE K  N ++   + +II+  +       + +   +   +   +S++ KN+IK  ++   RY+ +V   V E   Q      + L     D +V+YS E+ S+  +    +LYYD
Sbjct:   68 KPTMRFMPTYRLESK--NPLNKERVENIIKAVMNRHYNDEYMFHPKHSLHMAAQVSEEIKNRIK--LDNYDRYRYIVLVTVGEFLMQGLYSMVNFLWDAEKDGFVTYSVERPSYFAVCTTFYLYYD 189
[Close]
BLAST of COesterase domain-containing protein vs. TrEMBL
Match: A0A267DGN4 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030641g1 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.261e-13
Identity = 45/181 (24.86%), Postives = 87/181 (48.07%), Query Frame = 1 
Query:  664 SRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLY 1206
            S + + S +       ++P     T +P +      + T++ +K++I + + +H + +P+ K E TY LEP    +     +  I++ S++ F+ G  KY      K+ K++S+D K ++K   N   RYK++V   + +   Q    AS S+     DD+V+   E+ +F       W+Y
Sbjct:   26 SNAGKGSPDGPDEAGPARPKAAGGTPRPKQ----PSLATLMMLKKRIGDIRARHRRNRPVKKMENTYRLEPDSTKKFPPKEVQQIVDNSLRFFL-GESKYDPKACPKLAKMVSEDVKRRMKNNYN-CPRYKIIVHVTIAQKSEQILMQASRSVTDPATDDFVTGLLERPTFRASATAFWIY 200
[Close]
BLAST of COesterase domain-containing protein vs. TrEMBL
Match: A0A267F6Q5 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig027345g1 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.886e-13
Identity = 45/181 (24.86%), Postives = 88/181 (48.62%), Query Frame = 1 
Query:  664 SRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLY 1206
            S + + S +       ++P     T +P + +    + T++ +K++I + + +H + +P+ K E TY LEP    +     +  I++ S++ F+ G  KY      K+ K++S+D K ++K   N   RYK++V   + +   Q    AS S+     DD+V+   E+ +F       W+Y
Sbjct:   26 SNAGKGSPDGPDEAGPARPKAAGGTPRPKQLS----LATLMMLKKRIGDIRARHRRNRPVKKMENTYRLEPDSTKKFPPKEVQQIVDNSLRFFL-GESKYDPKACPKLAKMVSEDVKRRMKNNYN-CPRYKIIVHVTIAQKSEQILMQASRSVTDPATDDFVTGLLERPTFRASATAFWIY 200
[Close]
BLAST of COesterase domain-containing protein vs. TrEMBL
Match: A0A1I8IFZ9 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.195e-11
Identity = 41/156 (26.28%), Postives = 77/156 (49.36%), Query Frame = 1 
Query:  748 GRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGI-HKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            GRR S A       +     ++  +  +P P+   E TY L+P E  R +  +   I+  +++  V G+  KY     R  C+  ++ A+ +++++ ++  RYKLVV   +V++  Q  + AS S+ +   D+Y +       F+ +  VH LYY+
Sbjct:   51 GRRMSRAGHPGGPSLMLGGGDHGARSGQPPPL---ENTYRLKPDESQRFNCRLATEILTAALETAVAGVGQKYDAERCRSACQSAAEQARRELRELDSR--RYKLVVNVSIVQLLGQSAAVASRSVGNPETDNYATAQVSAGEFACVATVHALYYE 201
[Close]
BLAST of COesterase domain-containing protein vs. TrEMBL
Match: A0A267FMQ3 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig018852g1 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.831e-10
Identity = 36/136 (26.47%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:  808 NYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGI-HKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            ++  +  +P P+   E TY L+P E  R +  +   I+  +++  V G+  KY     R  C+  ++ A+ +++++ ++  RYKLVV   +V++  Q  + AS S+ +   D+Y +       F+ +  VH LYY+
Sbjct:   85 DHGARSGQPPPL---ENTYRLKPDESQRFNCRLATEILTAALETAVAGVGQKYDAERCRSACQSAAEQARRELRELDSR--RYKLVVNVSIVQLLGQSAAVASRSVGNPETDNYATAQVSAGEFACVATVHALYYE 215
[Close]
BLAST of COesterase domain-containing protein vs. TrEMBL
Match: A0A5A9PAB6 (Tctex1 domain-containing protein 4 OS=Triplophysa tibetana OX=1572043 GN=E1301_Tti006535 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.247e-10
Identity = 40/130 (30.77%), Postives = 74/130 (56.92%), Query Frame = 1 
Query:  829 KPKPILKF--EPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            +P+P+ +   E TY   P+E +R S+S    I + +++ ++EG+  YS     ++C+++SD   +++K V     RYKLV Q +V +   Q    AS SLL+ + DDY S  ++  +   + +VH +Y++
Sbjct:  114 RPEPVQEIYTENTYRTGPEEGSRFSASRTQQITQATLEGYLEGVC-YSPDSCSQLCQMLSDLVLSKLKDV--NPPRYKLVCQVVVGQSGKQGVRVASRSLLNVDTDDYTSAVFQNQTLFAVAIVHGVYFE 240
[Close]
BLAST of COesterase domain-containing protein vs. Planmine SMEST
Match: SMESG000064723.1 (SMESG000064723.1)

HSP 1 Score: 371.703 bits (953), Expect = 2.973e-128
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 1 
Query:  658 MSSRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD 1212
            MSSRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSIL LVHWLYYD
Sbjct:    1 MSSRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIKNYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIHKYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSWASHSLLSKNHDDYVSYSYEKSSFSILCLVHWLYYD 185
The following BLAST results are available for this feature:
BLAST of COesterase domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CG147634.707e-626.98gene:FBgn0033243 transcript:FBtr0088875[more]
CG147634.707e-626.98gene:FBgn0033243 transcript:FBtr0339127[more]
CG147634.707e-626.98gene:FBgn0033243 transcript:FBtr0339126[more]
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BLAST of COesterase domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267DGN41.261e-1324.86Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267F6Q51.886e-1324.86Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8IFZ97.195e-1126.28Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267FMQ34.831e-1026.47Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A5A9PAB65.247e-1030.77Tctex1 domain-containing protein 4 OS=Triplophysa ... [more]
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BLAST of COesterase domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of COesterase domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000064723.12.973e-12899.46SMESG000064723.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022312 ID=SMED30022312|Name=COesterase domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1573bp
GGATATCTATTGATTAATGGGCTCGCCTTAAATTTAATAAATTACTTAGT
TTCTTGGGGTCCTGGCCCTTATAATAGACATCTGACCAATTTAATAGTTT
ATTATTCTGCACAATCAAATTTGCTATCGGTTACCACTTTTTCCACCACA
AAATATCAATTTTTACTTTTCTTTAAATTTTTCATTACTTTTAACTGATT
TTTATAATTTCGAAATTTTATATTTTATTTCTTGCAATTTGTATAACCCC
AACACAACTAATAATAAATTATCTTTATTTCATACAAAAATGATATTCTT
GTTACCTAACACTCTTTTAGATCTTTTGTCTAATGTAACAATAAAATGAG
GCCTCCAATAAATTAAAATGGCCATTCTCTCATAAATCTATGTCAAAATG
GCAGTCAGAGATTTTTTATTATCATTTCAGTATTTAATGAGTTTGCATTA
TGTATTTACTAGATTAAAACATTAAACAAAAAGTTATTTTAATAAAACAA
TTTATTTAAAACAGGCTTTTATTTCAGTGAGTAGCTATGGTTATTCTCTG
AAAATATATCAAATATCATATAATCTGCTTACAAACAAATTATTATTATT
TACACGACGTAAATACTAATTTAAATAGCTTGTTATTATTTTGTCAATCA
AATTGGAATGAGTAGCAGATCTAAAGAAAATTCATCAGAAAATTTGAAAC
ATCGAAAAGTTTCCAAGCCTCATGGTTGCCAGGATACGAATCAGCCTGGA
CGCCGAACATCATTCGCGGACATTGGAACCATTATCAAAATGAAGCAGAA
AATTAAAAATTATAAATTAAAACATGAGAAACCAAAGCCAATTTTGAAAT
TTGAGCCAACTTATATTCTGGAGCCCAAGGAATGCAACAGAATCAGTAGT
TCTGTTATTCTTTCAATAATAGAGAAAAGTATAAAAATATTTGTTGAAGG
GATTCATAAGTATAGTGAATCTTATCTGCGTAAGGTGTGCAAATTAATCA
GTGATGATGCTAAAAATCAAATTAAGAAAGTGATCAACAAGCAAGCTCGG
TATAAACTGGTAGTTCAAACAATTGTCGTGGAAATGAAGAACCAGGATTT
CTCTTGGGCAAGTCATTCTCTACTGAGCAAAAATCATGACGATTACGTGT
CGTATTCATATGAAAAGTCTTCGTTTTCCATTTTGGGCTTGGTTCATTGG
TTATATTATGATTGAATGGTGCTGACTTATAAAAAACGTTATTTTCAGAA
ATTTGGATTTAGATTTATTGATAAATAAACGTGAGAGGTTTTCAAGTTTT
GGTAATGGAAAACTTTTACCGACGCATTAAGTTGAAGAGGCTTCATCATT
GGGTATTCCTTCGAAATTTTTTCAAACCCAAAATATCAAAAGGAAATATT
TTTTAACCAACAAAAATTCACCAGTGCTTTCATAAAACTGCAGTAATATA
AGAGCTAACCTCATCACTCAGCTTGAACCTCAGTCAACTCATATGCATAT
TGTTTGATTTGATTATTCCTTCCAAAAGAGACAAATCTTAGAATTAGAAT
TATTCAAATTAGTAAATTCGCAC
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protein sequence of SMED30022312-orf-1

>SMED30022312-orf-1 ID=SMED30022312-orf-1|Name=SMED30022312-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=186bp
MSSRSKENSSENLKHRKVSKPHGCQDTNQPGRRTSFADIGTIIKMKQKIK
NYKLKHEKPKPILKFEPTYILEPKECNRISSSVILSIIEKSIKIFVEGIH
KYSESYLRKVCKLISDDAKNQIKKVINKQARYKLVVQTIVVEMKNQDFSW
ASHSLLSKNHDDYVSYSYEKSSFSILGLVHWLYYD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000028Category 2 cell
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR038586Tctex-1-like_sf
IPR005334Tctex-1-like
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038586Tctex-1-like superfamilyGENE3DG3DSA:3.30.1140.40coord: 80..183
e-value: 7.6E-9
score: 37.4
IPR005334Dynein light chain Tctex-1 likePFAMPF03645Tctex-1coord: 86..183
e-value: 6.4E-14
score: 52.0
IPR005334Dynein light chain Tctex-1 likePANTHERPTHR21255T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAINcoord: 25..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR21255:SF2TCTEX1 DOMAIN-CONTAINING PROTEIN 4coord: 25..184