SMED30022032

Overview
NameSMED30022032
Smed IDSMED30022032
Length (bp)503
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30022032 (SMED30022032) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30022032 (SMED30022032) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30022032 (SMED30022032) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30022032 (SMED30022032) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30022032

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30022032SMESG000054716.1 SMESG000038532.1 SMESG000038528.1 SMESG000036060.1 Contig19411newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30022032SMESG000054716.1 SMESG000038532.1 SMESG000038528.1 SMESG000036060.1 Contig19411uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30022032SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30022032 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1)

HSP 1 Score: 227.639 bits (579), Expect = 1.371e-69
Identity = 151/167 (90.42%), Postives = 159/167 (95.21%), Query Frame = 1 
Query:    1 CKSLQNENDSNKSQFSXXXXXXXXXXXXXXXXRQILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            CKSL NENDSNKSQFSG+IGKLELIIKEINEE+QILQ+NYNKSGEENENLKFQC+KYLAEINKLESVLKESDRTNRRLQQEF+AKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEI KDFQLKMEN   SIEKLK +L++S NK KSLQ
Sbjct:  377 CKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYNKSGEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFEAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEIIKDFQLKMENLNRSIEKLKLQLSQSENKFKSLQ 543

HSP 2 Score: 90.1225 bits (222), Expect = 2.824e-21
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:  139 NENLKFQC-------DKYLAEINKLESVLKESDRTNRRLQQEFD---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSL 498
            NE L+ +C       ++YLA+IN+L+S LKES   N RLQQ+FD    K  HS+R NSQLESAN ++ Q+  N+  N AE  +QL+N+K   K+K+EE+ K +QLKMENSKSSIEKLKSELN+SVNKCKSL
Sbjct:  250 NEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSL 380

HSP 3 Score: 61.2326 bits (147), Expect = 3.026e-11
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  103 ILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERN 276
            ILQ+NYNKS +ENENLKFQCDKYLAEINK+E         N RL    + K  HS+ N
Sbjct:  828 ILQNNYNKSDKENENLKFQCDKYLAEINKME---------NNRLNSRINTKKIHSKAN 876

HSP 4 Score: 53.9138 bits (128), Expect = 8.092e-9
Identity = 57/123 (46.34%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:  136 ENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEF-DAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            EN+N+K     + A+I +L+S LKESDR    LQ++F D K K              K   +RN          QLENE   +KR +EEITKDFQLK E+S  SIEKLK +L++S NKCKSLQ
Sbjct:  545 ENDNIK---SGFAAQIEQLQSALKESDRKMGSLQRDFEDCKEK-------------LKHSQERNL---------QLENEMAVNKRTIEEITKDFQLKKEDSNRSIEKLKLQLSQSENKCKSLQ 642

HSP 5 Score: 53.9138 bits (128), Expect = 1.037e-8
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  169 YLAEINKLESVLKESDRTNRRLQQEF-DAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            + A+I +L+S LKESDR    LQ++F D K K              K   +RN          QLENE   +KR +EEITKDFQLKME+S SS EK+  +LN+S +KCKSLQ
Sbjct:  651 FAAQIEQLQSALKESDRKMGSLQRDFEDCKEK-------------LKHSQERNL---------QLENEMAVNKRTIEEITKDFQLKMEDSNSSNEKMLLQLNRSEDKCKSLQ 740
[Close]
BLAST of SMED30022032 vs. Planmine SMEST
Match: SMESG000036102.1 (SMESG000036102.1)

HSP 1 Score: 227.639 bits (579), Expect = 2.094e-69
Identity = 151/167 (90.42%), Postives = 159/167 (95.21%), Query Frame = 1 
Query:    1 CKSLQNENDSNKSQFSXXXXXXXXXXXXXXXXRQILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            CKSL NENDSNKSQFSG+IGKLELIIKEINEE+QILQ+NYNKSGEENENLKFQC+KYLAEINKLESVLKESDRTNRRLQQEF+AKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEI KDFQLKMEN   SIEKLK +L++S NK KSLQ
Sbjct:  377 CKSLLNENDSNKSQFSGQIGKLELIIKEINEEKQILQNNYNKSGEENENLKFQCNKYLAEINKLESVLKESDRTNRRLQQEFEAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEIIKDFQLKMENLNRSIEKLKLQLSQSENKFKSLQ 543

HSP 2 Score: 90.1225 bits (222), Expect = 2.691e-21
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:  139 NENLKFQC-------DKYLAEINKLESVLKESDRTNRRLQQEFD---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSL 498
            NE L+ +C       ++YLA+IN+L+S LKES   N RLQQ+FD    K  HS+R NSQLESAN ++ Q+  N+  N AE  +QL+N+K   K+K+EE+ K +QLKMENSKSSIEKLKSELN+SVNKCKSL
Sbjct:  250 NEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNKCANCAESTRQLQNQKSKVKKKIEELAKYYQLKMENSKSSIEKLKSELNQSVNKCKSL 380

HSP 3 Score: 61.2326 bits (147), Expect = 2.801e-11
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  100 QILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERN 276
            +ILQ+NYNKS +ENENLKFQCDKYLAEINK+E         N RL    + K  HS+ N
Sbjct:  827 KILQNNYNKSDKENENLKFQCDKYLAEINKME---------NNRLNSRINTKKIHSKAN 876

HSP 4 Score: 54.299 bits (129), Expect = 7.076e-9
Identity = 57/123 (46.34%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:  136 ENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEF-DAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            EN+N+K     + A+I +L+S LKESDR    LQ++F D K K              K   +RN          QLENE   +KR +EEITKDFQLK E+S  SIEKLK +L++S NKCKSLQ
Sbjct:  545 ENDNIK---SGFAAQIEQLQSALKESDRKMGSLQRDFEDCKEK-------------LKHSQERNL---------QLENEMAVNKRTIEEITKDFQLKKEDSNRSIEKLKLQLSQSENKCKSLQ 642

HSP 5 Score: 53.9138 bits (128), Expect = 9.600e-9
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  169 YLAEINKLESVLKESDRTNRRLQQEF-DAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            + A+I +L+S LKESDR    LQ++F D K K              K   +RN          QLENE   +KR +EEITKDFQLKME+S SS EK+  +LN+S +KCKSLQ
Sbjct:  651 FAAQIEQLQSALKESDRKMGSLQRDFEDCKEK-------------LKHSQERNL---------QLENEMAVNKRTIEEITKDFQLKMEDSNSSNEKMLLQLNRSEDKCKSLQ 740
[Close]
BLAST of SMED30022032 vs. Planmine SMEST
Match: SMESG000038528.1 (SMESG000038528.1)

HSP 1 Score: 207.608 bits (527), Expect = 9.189e-63
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:  103 ILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKM 426
            ILQ+NYNKSGEENENLKFQCDKYLAEIN+LESVLKESDRTNRRLQQEFDAKSKHS+RNSQLES NLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKM
Sbjct:  464 ILQNNYNKSGEENENLKFQCDKYLAEINRLESVLKESDRTNRRLQQEFDAKSKHSDRNSQLESTNLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKM 571

HSP 2 Score: 95.5153 bits (236), Expect = 3.154e-23
Identity = 75/134 (55.97%), Postives = 98/134 (73.13%), Query Frame = 1 
Query:  112 SNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFD---AKSKHSER-NSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            S Y+ + E N+        YLA+IN+L+S LKES   N RLQQ+FD    K  HS+R NSQLESAN ++ Q++R++  N AE  +QL+N+K   K+K+EE+ KDFQLKME+S S+IEKLKSELN+SVNKCKSLQ
Sbjct:  251 SQYSPTPETNQ--------YLAQINQLQSALKESKGINLRLQQDFDDCKVKLNHSQRRNSQLESANKYEHQINRDQCANCAESTRQLQNQKSRVKKKIEELAKDFQLKMEDSNSTIEKLKSELNQSVNKCKSLQ 376
[Close]
BLAST of SMED30022032 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1)

HSP 1 Score: 204.527 bits (519), Expect = 3.164e-61
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:  100 QILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKM 426
            +ILQ+NYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTN RLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKE DK+KVEEITKDFQLKM
Sbjct:  577 KILQNNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNSRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKEIDKKKVEEITKDFQLKM 685

HSP 2 Score: 185.267 bits (469), Expect = 1.526e-54
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1 
Query:   13 QNENDSNKSQFSXXXXXXXXXXXXXXXXRQILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            +NENDSNKSQFSG+IGKLELIIK+INEERQILQSNYNKSGEENENLKFQ DKYLAEINKLES+LKESDRTNRRLQQE DAKSKHS+ NSQLES N ++ Q++RN+  N  ELIKQL+NE E  K K+EEITKDFQLKME+S S+IEKLKSELN+SVNKCKSLQ
Sbjct:  328 KNENDSNKSQFSGQIGKLELIIKQINEERQILQSNYNKSGEENENLKFQHDKYLAEINKLESMLKESDRTNRRLQQEIDAKSKHSDWNSQLESTNQYEHQINRNQCTNCEELIKQLQNENERVKSKIEEITKDFQLKMEDSNSTIEKLKSELNQSVNKCKSLQ 490

HSP 3 Score: 65.4698 bits (158), Expect = 1.058e-12
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  127 SGEENENLKFQC-------DKYLAEINKLESVLKESDRTNRRLQQEFD---AKSKHSE-RNSQLESANLFKSQMDRNRFENNAELIKQLENEK 372
            S   NE L+ +C       ++YLA+IN+L+S LKES   N RLQQ+FD    K  HS+ RNSQLESAN ++ Q+  N+  N AE  +QL+N+K
Sbjct:  234 SNNSNEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNQCANCAESTRQLQNQK 326
[Close]
BLAST of SMED30022032 vs. Planmine SMEST
Match: SMESG000038532.1 (SMESG000038532.1)

HSP 1 Score: 204.142 bits (518), Expect = 3.480e-61
Identity = 104/109 (95.41%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:  100 QILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKM 426
            +ILQ+NYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTN RLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKE DK+KVEEITKDFQLKM
Sbjct:  577 KILQNNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNSRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKEIDKKKVEEITKDFQLKM 685

HSP 2 Score: 185.267 bits (469), Expect = 1.515e-54
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1 
Query:   13 QNENDSNKSQFSXXXXXXXXXXXXXXXXRQILQSNYNKSGEENENLKFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANLFKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMXXXXXXXXXXXXXXXXXVNKCKSLQ 501
            +NENDSNKSQFSG+IGKLELIIK+INEERQILQSNYNKSGEENENLKFQ DKYLAEINKLES+LKESDRTNRRLQQE DAKSKHS+ NSQLES N ++ Q++RN+  N  ELIKQL+NE E  K K+EEITKDFQLKME+S S+IEKLKSELN+SVNKCKSLQ
Sbjct:  328 KNENDSNKSQFSGQIGKLELIIKQINEERQILQSNYNKSGEENENLKFQHDKYLAEINKLESMLKESDRTNRRLQQEIDAKSKHSDWNSQLESTNQYEHQINRNQCTNCEELIKQLQNENERVKSKIEEITKDFQLKMEDSNSTIEKLKSELNQSVNKCKSLQ 490

HSP 3 Score: 65.4698 bits (158), Expect = 9.614e-13
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  127 SGEENENLKFQC-------DKYLAEINKLESVLKESDRTNRRLQQEFD---AKSKHSE-RNSQLESANLFKSQMDRNRFENNAELIKQLENEK 372
            S   NE L+ +C       ++YLA+IN+L+S LKES   N RLQQ+FD    K  HS+ RNSQLESAN ++ Q+  N+  N AE  +QL+N+K
Sbjct:  234 SNNSNEKLRSECKILQNETNQYLAQINQLQSALKESKGINGRLQQDFDDCKVKLNHSQRRNSQLESANQYEHQIGTNQCANCAESTRQLQNQK 326
The following BLAST results are available for this feature:
BLAST of SMED30022032 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30022032 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000036102.11.371e-6990.42SMESG000036102.1[more]
SMESG000036102.12.094e-6990.42SMESG000036102.1[more]
SMESG000038528.19.189e-6396.30SMESG000038528.1[more]
SMESG000038532.13.164e-6195.41SMESG000038532.1[more]
SMESG000038532.13.480e-6195.41SMESG000038532.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022032 ID=SMED30022032|Name=SMED30022032|organism=Schmidtea mediterranea sexual|type=transcript|length=503bp
TGCAAAAGCTTGCAGAATGAAAATGATAGCAATAAGTCACAATTTTCAGG
AAAAATTGGGAAATTGGAATTAATAATAAAAGAAATTAATGAGGAAAGAC
AAATTCTGCAAAGTAATTATAATAAATCAGGAGAAGAAAATGAAAATTTA
AAATTTCAATGTGATAAATATTTGGCAGAGATTAATAAATTGGAATCAGT
GTTGAAGGAATCGGACAGAACAAATAGGAGATTACAGCAAGAATTTGATG
CAAAATCAAAACATTCAGAGAGAAATTCACAATTGGAATCAGCAAATCTC
TTCAAATCACAAATGGACAGAAATCGATTTGAAAACAATGCAGAATTGAT
AAAACAATTGGAAAATGAAAAAGAGACAGATAAAAGAAAAGTTGAAGAAA
TTACAAAAGATTTCCAATTGAAAATGGAAAATTCAAAAAGCTCTATTGAG
AAGTTGAAATCGGAATTGAATAAATCGGTAAACAAATGCAAAAGCTTGCA
GAA
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protein sequence of SMED30022032-orf-1

>SMED30022032-orf-1 ID=SMED30022032-orf-1|Name=SMED30022032-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=167bp
CKSLQNENDSNKSQFSGKIGKLELIIKEINEERQILQSNYNKSGEENENL
KFQCDKYLAEINKLESVLKESDRTNRRLQQEFDAKSKHSERNSQLESANL
FKSQMDRNRFENNAELIKQLENEKETDKRKVEEITKDFQLKMENSKSSIE
KLKSELNKSVNKCKSLQ
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..84
NoneNo IPR availableCOILSCoilCoilcoord: 106..133
NoneNo IPR availableCOILSCoilCoilcoord: 138..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..103