SANT domain-containing protein

Overview
NameSANT domain-containing protein
Smed IDSMED30022031
Length (bp)1193
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SANT domain-containing protein (SMED30022031) t-SNE clustered cells

Violin plots show distribution of expression levels for SANT domain-containing protein (SMED30022031) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SANT domain-containing protein (SMED30022031) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SANT domain-containing protein (SMED30022031) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30022031

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
posterior sideSMED30022031h1SMcG0022576 dd_Smed_v4_10781_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30022031h1SMcG0022576 dd_Smed_v4_10781_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SANT domain-containing protein vs. Ensembl Celegans
Match: B0261.1 (pep chromosome:WBcel235:I:5263694:5268380:1 gene:WBGene00015091.1 transcript:B0261.1.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:B0261.1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.202e-6
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E D FY+ L  TG DF  M+  LP R+R +LK K+  EEK N A +   +   VR D
Sbjct:  263 WSEKETDLFYEVLQCTGQDFGLMSHYLPKRTRPELKAKYNREEKINWARVLNAISHPVRLD 323          
BLAST of SANT domain-containing protein vs. Ensembl Fly
Match: Bdp1 (gene:FBgn0032512 transcript:FBtr0080471)

HSP 1 Score: 56.225 bits (134), Expect = 3.076e-8
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  682 QPNFSLTSEKSVNKSRLNAAGEIDI-----ECESINELGFEQEEIVWNSFGIXXXXXXX----XXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILL 1035
            +P    TS   V + +L+A GE+ I     E E+  E+  E  +++ NS  I     +      K+   +  W  +E   FY++L + GTDF+ M  + P RSR DLK K+K EE+ N  LI + LL
Sbjct:  281 EPKGESTSAMLVPQLKLDANGEMIIDEKTLEIETTAEV--EARKVLANSSLILMDETTGDNGFYKRHKRTPYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKALL 405          
BLAST of SANT domain-containing protein vs. Ensembl Fly
Match: Bdp1 (gene:FBgn0032512 transcript:FBtr0342639)

HSP 1 Score: 56.225 bits (134), Expect = 3.378e-8
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  682 QPNFSLTSEKSVNKSRLNAAGEIDI-----ECESINELGFEQEEIVWNSFGIXXXXXXX----XXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILL 1035
            +P    TS   V + +L+A GE+ I     E E+  E+  E  +++ NS  I     +      K+   +  W  +E   FY++L + GTDF+ M  + P RSR DLK K+K EE+ N  LI + LL
Sbjct:  281 EPKGESTSAMLVPQLKLDANGEMIIDEKTLEIETTAEV--EARKVLANSSLILMDETTGDNGFYKRHKRTPYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKALL 405          
BLAST of SANT domain-containing protein vs. Ensembl Mouse
Match: Bdp1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:MGI Symbol;Acc:MGI:1347077])

HSP 1 Score: 49.2914 bits (116), Expect = 8.589e-6
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRN 1008
            W+ +E D F+ A+ + GTDF+ +  + P R+R+++K KFK EEK N
Sbjct:  305 WSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 350          
BLAST of SANT domain-containing protein vs. Ensembl Mouse
Match: Bdp1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB [Source:MGI Symbol;Acc:MGI:1347077])

HSP 1 Score: 49.2914 bits (116), Expect = 9.125e-6
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRN 1008
            W+ +E D F+ A+ + GTDF+ +  + P R+R+++K KFK EEK N
Sbjct:  305 WSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTN 350          
BLAST of SANT domain-containing protein vs. UniProt/SwissProt
Match: sp|O94481|TFC5_SCHPO (Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bdp1 PE=3 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 1.487e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQIL 1032
            WN  + + FY+AL   GTDF  +A + P R+R  +K KFK EE+RN A + Q L
Sbjct:  381 WNAMDTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQAL 434          
BLAST of SANT domain-containing protein vs. TrEMBL
Match: A0A1X7VUW4 (SANT domain-containing protein OS=Amphimedon queenslandica OX=400682 GN=105316901 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.095e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQIL 1032
            W  EE +NFY+AL   GTDFT M  +LP R+R +LK KFK EEKRN A +   L
Sbjct:  318 WTNEETNNFYKALSQVGTDFTMMTLLLPHRNRKELKNKFKKEEKRNPARVSATL 371          
BLAST of SANT domain-containing protein vs. TrEMBL
Match: A0A146LKU9 (Transcription factor TFIIIB component B (Fragment) OS=Lygus hesperus OX=30085 GN=Bdp1 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.763e-7
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQIL 1032
            W  EE   FY++L   GTDFT M T+ P RSR +LK KFK EE++NSALI+++L
Sbjct:  831 WGFEETVKFYKSLHGMGTDFTSMLTLFPNRSRSNLKSKFKREERKNSALIDKVL 884          
BLAST of SANT domain-containing protein vs. TrEMBL
Match: A0A0P5E6P1 (Transcription factor TFIIIB component B OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.866e-7
Identity = 27/61 (44.26%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E   FY+AL + GT+F+ M  + PGR R+DLK+KFK+EEK N +L+++I+  ++  D
Sbjct:  397 WSVKETARFYRALNMLGTNFSLMVKLFPGRDRIDLKRKFKSEEKTNPSLVDKIIATQIPFD 457          
BLAST of SANT domain-containing protein vs. TrEMBL
Match: A0A131ZY65 (Myb_DNA-bind_7 domain-containing protein OS=Sarcoptes scabiei OX=52283 GN=QR98_0020540 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.196e-7
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATIL---PGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHLK 1086
            WN EE   FY AL + GTDFT M  +     GR+R  LK+KFK EEK N A I++IL   +R + S +R D  LK
Sbjct:  271 WNAEETGTFYTALEIVGTDFTLMEAVFFKDKGRNRKQLKQKFKREEKINRAYIDEILYKSLR-NRSRIRLDTELK 344          
BLAST of SANT domain-containing protein vs. TrEMBL
Match: A0A165A5Q3 (SANT domain-containing protein OS=Daphnia magna OX=35525 GN=APZ42_016807 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.329e-7
Identity = 27/61 (44.26%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E   FY+AL + GT+F+ M  + PGR R+DLK+KFK+EEK N +L+++I+  ++  D
Sbjct:  397 WSVKETARFYRALNMLGTNFSLMVKLFPGRDRIDLKRKFKSEEKTNPSLVDKIIATQIPFD 457          
BLAST of SANT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000053151.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 52.7582 bits (125), Expect = 5.734e-7
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E D F+ A+ + GTDF+ +  + P R+R+++K KFK EE+ NS  I++    R R D
Sbjct:  470 WSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANSWRIDKAFKERRRLD 530          
BLAST of SANT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000046411.1 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 52.7582 bits (125), Expect = 5.734e-7
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E D F+ A+ + GTDF+ +  + P R+R+++K KFK EE+ NS  I++    R R D
Sbjct:  470 WSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANSWRIDKAFKERRRLD 530          
BLAST of SANT domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000017002.2 (transcription factor TFIIIB component B'' homolog [Source:NCBI gene;Acc:103025922])

HSP 1 Score: 52.7582 bits (125), Expect = 5.892e-7
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            W+ +E D F+ A+ + GTDF+ +  + P R+R+++K KFK EE+ NS  I++    R R D
Sbjct:  470 WSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKKEERANSWRIDKAFKERRRLD 530          
BLAST of SANT domain-containing protein vs. Ensembl Cavefish
Match: si:ch211-204c21.1 (si:ch211-204c21.1 [Source:ZFIN;Acc:ZDB-GENE-030429-35])

HSP 1 Score: 50.8322 bits (120), Expect = 2.039e-6
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQ 1026
            W+  E D F+ A+ + GTDF+ +  +LP RSR ++K KFK EE+ NS  I+Q
Sbjct:  422 WSVRETDMFFLAISMVGTDFSLIGMLLPHRSRTEIKNKFKKEERANSWRIDQ 473          
BLAST of SANT domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007128.1 (pep scaffold:Pmarinus_7.0:GL483022:16807:23004:-1 gene:ENSPMAG00000006446.1 transcript:ENSPMAT00000007128.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 45.0542 bits (105), Expect = 8.311e-6
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 1
Query:  883 EQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCD 1053
            E + F+ A+ + G DF+ +  + P RSR+D+K KFK EE+ N   I+Q    ++  D
Sbjct:  129 ETELFFLAISMVGMDFSMIGQLFPNRSRVDIKNKFKREERCNPRKIDQAFRNKLPLD 185          
BLAST of SANT domain-containing protein vs. Ensembl Yeast
Match: BDP1 (Essential subunit of RNA polymerase III transcription factor (TFIIIB); TFIIIB is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs [Source:SGD;Acc:S000004984])

HSP 1 Score: 48.9062 bits (115), Expect = 9.263e-7
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  871 WNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRV 1044
            W  EE   FY+AL + GTDF  ++ + P RSR  +K KF  EEK+   LIE  L  ++
Sbjct:  420 WTVEEMIKFYKALSMWGTDFNLISQLYPYRSRKQVKAKFVNEEKKRPILIELALRSKL 477          
BLAST of SANT domain-containing protein vs. Planmine SMEST
Match: SMESG000016334.1 (SMESG000016334.1)

HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 309/340 (90.88%), Postives = 316/340 (92.94%), Query Frame = 1
Query:   97 SHTNISDCTRICKYVSDECLILKTEKVVNDNFNVQIKSEKVNKNYKSGCDPKCYILHEVKTESD-VIKFDDFXXXXXXXXXXXXXXXXXXXXXSHSIDSGNFQELKTKKIFRIKDQELKSSNIDCKSNFNPESGEPKSCRKRDKTFVLKRHKTIDENDFSDTRNLKLKDLVNIIPRFCAPESRXXXXXXXXXXNQSQPNFSLTSEKSVNKSRLNAAGEIDIECESINELGFEQEEIVWNSFGIXXXXXXXXXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHLKAVLDMICSK 1113
            SHTNISDCTRICKYVSDECLILKTEKVVNDNFNVQIKSEKVNKNYKSGCDPKCYILHEVKTES+  IK +  +L                   SHS+DSGNFQELKTKKIFRIKDQELKSSNIDC+SNFNPESGEPKSCRKRDKTFVLKRHKTIDENDFSDTRNLKLKDLVNIIPRFCAPESRLHHKLQKKLKNQSQPNFSLTSEKS+NKSRLNA+GEIDIECESINELGFEQEEIVWNSFGIKSSSRSFRKKKLPSKRWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHLKAVLDMICSK
Sbjct:   16 SHTNISDCTRICKYVSDECLILKTEKVVNDNFNVQIKSEKVNKNYKSGCDPKCYILHEVKTESEETIKKEKIELKIEN---------------SHSLDSGNFQELKTKKIFRIKDQELKSSNIDCESNFNPESGEPKSCRKRDKTFVLKRHKTIDENDFSDTRNLKLKDLVNIIPRFCAPESRLHHKLQKKLKNQSQPNFSLTSEKSLNKSRLNASGEIDIECESINELGFEQEEIVWNSFGIKSSSRSFRKKKLPSKRWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHLKAVLDMICSK 340          
BLAST of SANT domain-containing protein vs. Planmine SMEST
Match: SMESG000016335.1 (SMESG000016335.1)

HSP 1 Score: 117.087 bits (292), Expect = 4.152e-28
Identity = 88/206 (42.72%), Postives = 120/206 (58.25%), Query Frame = 1
Query:  511 RKRDKTFVLKRHKTIDENDFSDTRNLKLKDLVNIIPRFCAPESRXXXXXXXXXXNQSQPNFSLTSEKSVNKS-----------RLNAAGEI---DIECESINELGFE-QEEIVWNSFGIXXXXXXXXXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHL 1083
            ++++K+FVLKRH  +   D  D   L L +L+NI PR   P+SRL+   ++   +  Q N  L    S ++            R++  G+I   D E E+  ++  E  EEIV N+  ++SS RS+ K++L  KRW  EE  NFY+ALL   TDFTRMATI  GRSR DLKKKFK EEK NS L+ +IL+  V CD S +  D HL
Sbjct:  748 KRKEKSFVLKRHSELRAEDERDLSKLTLLELINIEPRLPPPQSRLNKSNKRAGDSSDQ-NLELERISSSSQQKSANKSKSKKFRIDLDGQIVIDDEEDETNMQISTEGMEEIVENAADLRSSYRSYMKRRLSGKRWKAEETRNFYKALLAVKTDFTRMATIFKGRSRADLKKKFKVEEKLNSKLVYEILVSPVVCDISNLVIDSHL 952          
BLAST of SANT domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.233e-21
Identity = 80/193 (41.45%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  553 IDENDFSDTRNLKLKDLVNI-IPRFCAPESRXXXXXXXXXXNQSQPNFSL------TSEKSVNKS-----RLNAAGEI---DIECESINELGFE-QEEIVWNSFGIXXXXXXXXXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHL 1083
            I + D  D   L L +L+NI +P    P      K  K+  N S  N  L      + +KS++K      R++  G+I   D E E+  ++G E  EEIV N+  ++ S R  RK +L  KRWN EE  NFY ALL   TDFTRMAT+  GRSR DLKKKFK EEK N   +++IL  ++ CD S +  D HL
Sbjct:  142 IADEDERDPSKLTLLELINIDLPLPHTPP--RLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHL 332          
BLAST of SANT domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.863e-21
Identity = 80/193 (41.45%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  553 IDENDFSDTRNLKLKDLVNI-IPRFCAPESRXXXXXXXXXXNQSQPNFSL------TSEKSVNKS-----RLNAAGEI---DIECESINELGFE-QEEIVWNSFGIXXXXXXXXXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHL 1083
            I + D  D   L L +L+NI +P    P      K  K+  N S  N  L      + +KS++K      R++  G+I   D E E+  ++G E  EEIV N+  ++ S R  RK +L  KRWN EE  NFY ALL   TDFTRMAT+  GRSR DLKKKFK EEK N   +++IL  ++ CD S +  D HL
Sbjct:  142 IADEDERDPSKLTLLELINIDLPLPHTPP--RLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHL 332          
BLAST of SANT domain-containing protein vs. Planmine SMEST
Match: SMESG000023131.1 (SMESG000023131.1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.026e-21
Identity = 80/193 (41.45%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  553 IDENDFSDTRNLKLKDLVNI-IPRFCAPESRXXXXXXXXXXNQSQPNFSL------TSEKSVNKS-----RLNAAGEI---DIECESINELGFE-QEEIVWNSFGIXXXXXXXXXXXXXXXXWNREEQDNFYQALLVTGTDFTRMATILPGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHL 1083
            I + D  D   L L +L+NI +P    P      K  K+  N S  N  L      + +KS++K      R++  G+I   D E E+  ++G E  EEIV N+  ++ S R  RK +L  KRWN EE  NFY ALL   TDFTRMAT+  GRSR DLKKKFK EEK N   +++IL  ++ CD S +  D HL
Sbjct:  142 IADEDERDPSKLTLLELINIDLPLPHTPP--RLKKSNKRSGNNSDRNMELEQISGSSQQKSIDKQKSKKFRIDLDGQIVIDDDEDETNMQIGIEAMEEIVENAADLRMSYRDQRKHRLSGKRWNAEETSNFYLALLYVKTDFTRMATVFKGRSRADLKKKFKVEEKANLEFVDKILEAQLDCDISNLVIDSHL 332          
The following BLAST results are available for this feature:
BLAST of SANT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SANT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
B0261.12.202e-642.62pep chromosome:WBcel235:I:5263694:5268380:1 gene:W... [more]
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BLAST of SANT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Bdp13.076e-833.86gene:FBgn0032512 transcript:FBtr0080471[more]
Bdp13.378e-833.86gene:FBgn0032512 transcript:FBtr0342639[more]
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BLAST of SANT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SANT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SANT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Bdp18.589e-643.48B double prime 1, subunit of RNA polymerase III tr... [more]
Bdp19.125e-643.48B double prime 1, subunit of RNA polymerase III tr... [more]
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BLAST of SANT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|O94481|TFC5_SCHPO1.487e-646.30Transcription factor TFIIIB component B'' OS=Schiz... [more]
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BLAST of SANT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1X7VUW41.095e-755.56SANT domain-containing protein OS=Amphimedon queen... [more]
A0A146LKU91.763e-755.56Transcription factor TFIIIB component B (Fragment)... [more]
A0A0P5E6P11.866e-744.26Transcription factor TFIIIB component B OS=Daphnia... [more]
A0A131ZY652.196e-748.00Myb_DNA-bind_7 domain-containing protein OS=Sarcop... [more]
A0A165A5Q32.329e-744.26SANT domain-containing protein OS=Daphnia magna OX... [more]
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BLAST of SANT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
ENSAMXT00000053151.15.734e-739.34transcription factor TFIIIB component B'' homolog ... [more]
ENSAMXT00000046411.15.734e-739.34transcription factor TFIIIB component B'' homolog ... [more]
ENSAMXT00000017002.25.892e-739.34transcription factor TFIIIB component B'' homolog ... [more]
si:ch211-204c21.12.039e-646.15si:ch211-204c21.1 [Source:ZFIN;Acc:ZDB-GENE-030429... [more]
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BLAST of SANT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSPMAT00000007128.18.311e-636.84pep scaffold:Pmarinus_7.0:GL483022:16807:23004:-1 ... [more]
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BLAST of SANT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
BDP19.263e-743.10Essential subunit of RNA polymerase III transcript... [more]
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BLAST of SANT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SANT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SANT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000016334.10.000e+090.88SMESG000016334.1[more]
SMESG000016335.14.152e-2842.72SMESG000016335.1[more]
SMESG000023131.13.233e-2141.45SMESG000023131.1[more]
SMESG000023131.13.863e-2141.45SMESG000023131.1[more]
SMESG000023131.14.026e-2141.45SMESG000023131.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30022031 ID=SMED30022031|Name=SANT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1193bp
CTTATTTAATTGCATAATTTGATATTGTAATAAAATATTTTCCTTTTCTT
TATGAATGTAAAAATTAACAATAAAAATTTTCAAAAAATAAAAATTAGTC
ACACTAATATCAGTGACTGTACAAGAATATGCAAATATGTGTCAGATGAA
TGTTTAATTTTAAAAACCGAAAAAGTTGTTAATGATAATTTTAATGTCCA
AATAAAGTCAGAAAAAGTTAATAAAAACTATAAATCTGGTTGTGATCCTA
AATGTTACATTTTACACGAAGTCAAAACTGAATCTGATGTTATCAAATTT
GATGATTTCAAACTACTTAACAATGAAGAAGAAACTATTAAAAAAGAAAA
GATTGAATTAAAAATCGAAAATAGTCACTCGATTGATAGTGGGAATTTTC
AGGAGCTAAAAACTAAAAAAATATTTAGAATTAAAGATCAGGAATTAAAA
AGTTCAAATATTGATTGTAAGTCGAATTTCAATCCGGAATCGGGAGAGCC
TAAAAGTTGCCGGAAAAGAGATAAAACCTTCGTCCTAAAACGACACAAAA
CAATCGATGAGAACGATTTCTCCGACACGAGAAATTTGAAACTGAAAGAT
TTGGTCAACATAATTCCGCGTTTCTGCGCTCCCGAGTCTCGATTGCACCA
CAAATTGCAGAAGAAACTCAAAAATCAATCGCAACCAAATTTCAGTTTGA
CGAGTGAAAAATCCGTGAATAAATCCCGACTGAATGCCGCCGGTGAAATC
GATATCGAATGCGAATCGATAAATGAACTCGGATTTGAGCAGGAGGAAAT
CGTTTGGAATTCTTTCGGCATCAAGTCGAGCTCGAGGAGCTTTAGAAAAA
AGAAATTACCAAGCAAGCGCTGGAACCGAGAGGAGCAAGATAATTTCTAT
CAAGCGCTCCTAGTTACCGGGACAGATTTCACGCGCATGGCAACGATTTT
GCCGGGTCGCTCGAGGCTCGATTTAAAGAAAAAATTTAAAACAGAAGAAA
AGCGGAATTCTGCATTGATTGAGCAGATTTTACTCGGGCGCGTTCGTTGT
GATCCCTCAACTGTGAGGTTTGATTATCACTTGAAAGCAGTACTAGACAT
GATATGCAGCAAACTTGAAGAGGAGCAGAATTAATATTCTAGCAATTCTA
GTCATTCAAAACTTCATTTAAATGAAAATACAATGACGAGATC
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protein sequence of SMED30022031-orf-1

>SMED30022031-orf-1 ID=SMED30022031-orf-1|Name=SMED30022031-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=361bp
MNVKINNKNFQKIKISHTNISDCTRICKYVSDECLILKTEKVVNDNFNVQ
IKSEKVNKNYKSGCDPKCYILHEVKTESDVIKFDDFKLLNNEEETIKKEK
IELKIENSHSIDSGNFQELKTKKIFRIKDQELKSSNIDCKSNFNPESGEP
KSCRKRDKTFVLKRHKTIDENDFSDTRNLKLKDLVNIIPRFCAPESRLHH
KLQKKLKNQSQPNFSLTSEKSVNKSRLNAAGEIDIECESINELGFEQEEI
VWNSFGIKSSSRSFRKKKLPSKRWNREEQDNFYQALLVTGTDFTRMATIL
PGRSRLDLKKKFKTEEKRNSALIEQILLGRVRCDPSTVRFDYHLKAVLDM
ICSKLEEEQN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
Vocabulary: INTERPRO
TermDefinition
IPR039467TFIIIB_B''_Myb
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0001026TFIIIB-type transcription factor activity
Vocabulary: cellular component
TermDefinition
GO:0000126transcription factor TFIIIB complex
Vocabulary: biological process
TermDefinition
GO:0006359regulation of transcription from RNA polymerase III promoter
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 256..304
e-value: 1.9E-5
score: 34.1
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 259..300
e-value: 0.00429102
score: 32.9326
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 260..314
e-value: 2.7E-5
score: 26.3
NoneNo IPR availablePANTHERPTHR22929RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR Bcoord: 49..320
NoneNo IPR availablePANTHERPTHR22929:SF0TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOGcoord: 49..320
IPR039467Transcription factor TFIIIB component B'', Myb domainPFAMPF15963Myb_DNA-bind_7coord: 249..324
e-value: 3.1E-21
score: 75.1
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 249..304