Polymerase delta-interacting protein 3

Overview
NamePolymerase delta-interacting protein 3
Smed IDSMED30021993
Length (bp)1680
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Polymerase delta-interacting protein 3 (SMED30021993) t-SNE clustered cells

Violin plots show distribution of expression levels for Polymerase delta-interacting protein 3 (SMED30021993) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Polymerase delta-interacting protein 3 (SMED30021993) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Polymerase delta-interacting protein 3 (SMED30021993) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021993

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021993SMESG000011791.1 SmedASXL_012291SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30021993SMESG000011791.1 SmedASXL_012291SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
neoblastSMED30021993SMESG000011791.1 dd_Smed_v4_6532_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782])

HSP 1 Score: 71.633 bits (174), Expect = 1.066e-12
Identity = 47/155 (30.32%), Postives = 85/155 (54.84%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSN------NEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +      +E+  +++    +  PA   +++ D + ++++  S   + V  +P +F + L
Sbjct:  273 VLSPLEGTKMTVNNLHPRVTEEDIVELFC-VCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPA---EVDPDTILKALFKSS--GASVTTQPTEFKIKL 421
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782])

HSP 1 Score: 71.633 bits (174), Expect = 1.093e-12
Identity = 47/155 (30.32%), Postives = 84/155 (54.19%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL------VTAACESVSRDSSN------NEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+PM   L      +T+    + R S +      +E+  +++    +  PA   +++ D + ++++  S   + V  +P +F + L
Sbjct:  290 VLSPLEGTKMTVNNLHPRVTEEDIVELF-CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPA---EVDPDTILKALFKSS--GASVTTQPTEFKIKL 438
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Human
Match: POLDIP3 (DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782])

HSP 1 Score: 71.2478 bits (173), Expect = 1.125e-12
Identity = 47/155 (30.32%), Postives = 85/155 (54.84%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSN------NEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +      +E+  +++    +  PA   +++ D + ++++  S   + V  +P +F + L
Sbjct:  244 VLSPLEGTKMTVNNLHPRVTEEDIVELFC-VCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPA---EVDPDTILKALFKSS--GASVTTQPTEFKIKL 392
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Fly
Match: CG6961 (gene:FBgn0030959 transcript:FBtr0074660)

HSP 1 Score: 72.4034 bits (176), Expect = 3.944e-13
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLV 952
            GYR+ V NLH  V   D+ ELF+ + G +    +VRPG AEV+++ L  AEKA+D +H R+ D +PM+  LV
Sbjct:  365 GYRLLVSNLHTNVTTADIRELFSDI-GPVYDARVVRPGTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLV 435
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Fly
Match: CG18259 (gene:FBgn0030956 transcript:FBtr0074661)

HSP 1 Score: 72.0182 bits (175), Expect = 4.875e-13
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLV 952
            GYR+ V NLH  V   D+ ELF+ + G +    +VRPG AEV+++ L  AEKA+D +H R+ D +PM+  LV
Sbjct:  365 GYRLLVSNLHTNVTTADIRELFSDI-GPVYDARVVRPGTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLV 435
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Fly
Match: Ref1 (gene:FBgn0010774 transcript:FBtr0081642)

HSP 1 Score: 49.2914 bits (116), Expect = 3.485e-6
Identity = 29/97 (29.90%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:  743 RIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRP------GYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAKIS 1015
            R+ V NL   V+  D+ ELF    G ++   +         G A+V+F + +DA KAI ++HG  LDG+PM ++L  +    ++R  +  ++K ++ 
Sbjct:  110 RLIVGNLDYGVSNTDIKELFNDF-GPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDVKRRVG 205
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2])

HSP 1 Score: 67.3958 bits (163), Expect = 1.732e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:  695 KSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            ++ T    + SP++G +I V NLHP+V  +D+ ELF  + G L+   L + G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  296 QTHTPTQPVFSPLEGTKITVTNLHPRVTEEDIVELF-CVCGALKRARLAKVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKCNL 379
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2])

HSP 1 Score: 67.0106 bits (162), Expect = 2.212e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:  695 KSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            ++ T    + SP++G +I V NLHP+V  +D+ ELF  + G L+   L + G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  308 QTHTPTQPVFSPLEGTKITVTNLHPRVTEEDIVELF-CVCGALKRARLAKVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKCNL 391
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Zebrafish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2])

HSP 1 Score: 67.0106 bits (162), Expect = 2.600e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:  695 KSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            ++ T    + SP++G +I V NLHP+V  +D+ ELF  + G L+   L + G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  337 QTHTPTQPVFSPLEGTKITVTNLHPRVTEEDIVELFC-VCGALKRARLAKVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKCNL 420
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Xenopus
Match: nop2 (NOP2 nucleolar protein [Source:Xenbase;Acc:XB-GENE-962291])

HSP 1 Score: 69.707 bits (169), Expect = 4.908e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  725 SPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            SP++G ++ V NLHP+V  +D+ ELF  + G L+   L+ PG AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  327 SPLEGTKMTVNNLHPRVTEEDIVELF-CVCGALKRARLLSPGAAEVVFVRKDDAVGAYKKYNNRYLDGQPMKCNL 400
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Xenopus
Match: ralgds (ral guanine nucleotide dissociation stimulator [Source:Xenbase;Acc:XB-GENE-987988])

HSP 1 Score: 49.2914 bits (116), Expect = 6.675e-6
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRP------GYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ V NL   V+  D+ ELF    G L+   +         G A+V F + +DA KA+ +++G  LDG+PMN++LVT+  E+  R
Sbjct:  108 GGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQRR 193
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Xenopus
Match: ralgds (ral guanine nucleotide dissociation stimulator [Source:Xenbase;Acc:XB-GENE-987988])

HSP 1 Score: 48.9062 bits (115), Expect = 6.818e-6
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRP------GYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ V NL   V+  D+ ELF    G L+   +         G A+V F + +DA KA+ +++G  LDG+PMN++LVT+  E+  R
Sbjct:   74 GGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQRR 159
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Match: Poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:MGI Symbol;Acc:MGI:1921076])

HSP 1 Score: 76.2554 bits (186), Expect = 2.210e-14
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHT---MQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +  +K K S++     PA +    +++ D V R+++  S   + V  +P +F + L
Sbjct:  244 VLSPLEGTKMTVNNLHPRVTEEDIVELF-CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVK-KESELPRRGNPASSNPPAEVDPDTVLRALFKSS--GASVTTQPTEFKIKL 391
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Match: Poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:MGI Symbol;Acc:MGI:1921076])

HSP 1 Score: 76.2554 bits (186), Expect = 2.830e-14
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHT---MQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +  +K K S++     PA +    +++ D V R+++  S   + V  +P +F + L
Sbjct:  273 VLSPLEGTKMTVNNLHPRVTEEDIVELF-CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVK-KESELPRRGNPASSNPPAEVDPDTVLRALFKSS--GASVTTQPTEFKIKL 420
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Match: 4931428L18Rik (RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:MGI:1918238])

HSP 1 Score: 50.447 bits (119), Expect = 2.186e-6
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLR--SCNLVRPGY----AEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ + NLH  V+  D+ +LF    G LR  + +  R G     A V F + +DA KA+ E++G  LDG+PMN++LVT+  ++  R
Sbjct:   82 GGKLLLSNLHFGVSDADIQKLFAEF-GTLRKSAVHYDRSGQSLGTAHVHFERKADALKAMREYNGVPLDGRPMNIQLVTSTIDTRPR 167
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Match: 4931428L18Rik (RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:MGI:1918238])

HSP 1 Score: 50.447 bits (119), Expect = 2.186e-6
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLR--SCNLVRPGY----AEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ + NLH  V+  D+ +LF    G LR  + +  R G     A V F + +DA KA+ E++G  LDG+PMN++LVT+  ++  R
Sbjct:   82 GGKLLLSNLHFGVSDADIQKLFAEF-GTLRKSAVHYDRSGQSLGTAHVHFERKADALKAMREYNGVPLDGRPMNIQLVTSTIDTRPR 167
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Match: 4931428L18Rik (RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:MGI:1918238])

HSP 1 Score: 50.447 bits (119), Expect = 2.186e-6
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLR--SCNLVRPGY----AEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ + NLH  V+  D+ +LF    G LR  + +  R G     A V F + +DA KA+ E++G  LDG+PMN++LVT+  ++  R
Sbjct:   82 GGKLLLSNLHFGVSDADIQKLFAEF-GTLRKSAVHYDRSGQSLGTAHVHFERKADALKAMREYNGVPLDGRPMNIQLVTSTIDTRPR 167
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. UniProt/SwissProt
Match: sp|Q8BG81|PDIP3_MOUSE (Polymerase delta-interacting protein 3 OS=Mus musculus OX=10090 GN=Poldip3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.980e-13
Identity = 51/152 (33.55%), Postives = 85/152 (55.92%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHT---MQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +  +K K S++     PA +    +++ D V R+++  S   + V  +P +F + L
Sbjct:  273 VLSPLEGTKMTVNNLHPRVTEEDIVELF-CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVK-KESELPRRGNPASSNPPAEVDPDTVLRALFKSS--GASVTTQPTEFKIKL 420
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. UniProt/SwissProt
Match: sp|Q9BY77|PDIP3_HUMAN (Polymerase delta-interacting protein 3 OS=Homo sapiens OX=9606 GN=POLDIP3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.117e-12
Identity = 47/155 (30.32%), Postives = 85/155 (54.84%), Query Frame = 2 
Query:  719 LVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKP------MNLKLVTAACESVSRDSSN------NEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            ++SP++G ++ V NLHP+V  +D+ ELF  + G L+   LV PG AEVVF K  DA  A  +++ R LDG+P      MN  ++T+    + R S +      +E+  +++    +  PA   +++ D + ++++  S   + V  +P +F + L
Sbjct:  273 VLSPLEGTKMTVNNLHPRVTEEDIVELFC-VCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPPA---EVDPDTILKALFKSS--GASVTTQPTEFKIKL 421
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Match: A0A5J4NAK9 (Polymerase delta-interacting protein 3 (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0013462 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.268e-26
Identity = 67/170 (39.41%), Postives = 102/170 (60.00%), Query Frame = 2 
Query:  722 VSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVT-------------------AACESVSRDSSN--------NEIKAKISKIQV-NRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            +SPIQG+R+EV+NL P V++DDVYELF+S+ G LR CNLVRPG+A+VVF +L DA +A+  ++GRELDG+PMN+ LVT                   A+  +VS  S+          +  AK+    +   K   TM+I+ D V ++++  ++ +    +KP  F+V+L
Sbjct:   78 LSPIQGFRVEVRNLQPSVSLDDVYELFSSI-GTLRLCNLVRPGHAQVVFNELPDANEAVRRYNGRELDGRPMNVNLVTQLPSGMGTAVRFASRLGPVASPAAVSFQSAGALANKWRQGDSPAKLLHTGLGGSKGKSTMEIDMDVVRKALF--NVSSGSTARKPVDFNVSL 244
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Match: W6U4V6 (Polymerase delta-interacting protein 3 OS=Echinococcus granulosus OX=6210 GN=EGR_08936 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.839e-26
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:  641 TSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAK---ISKIQVNRKPAHTMQ--INKDAVFRSM 1084
            T  VENK         AQ S  TV+S +SPIQG+R+E KNL P V +DDVYELF+ + G LRSCNLV PG AEV+F    DA+ A+  ++GRELDG+PM + L T    S +     + +K+     + +Q +R P+   +  +N+D V R+ 
Sbjct:  113 TRTVENKPTG--AGMLAQGS--TVDSTISPIQGFRVEAKNLLPSVTIDDVYELFSGV-GSLRSCNLVHPGQAEVIFNSPQDAQSAVTRYNGRELDGRPMIVTLTTPLASSSTTTLKGSALKSSGGFAAAVQNSRAPSLNGRGNLNRDVVNRAW 260
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Match: A0A068X1Z7 (Polymerase delta interacting protein 3 OS=Echinococcus granulosus OX=6210 GN=EgrG_000095500 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.055e-25
Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 2 
Query:  641 TSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAK---ISKIQVNRKPAHTMQ--INKDAVFRSM 1084
            T  VENK         AQ S  TV+S +SPIQG+R+E KNL P V +DDVYELF+ + G LRSCNLV PG AEV+F    DA+ A+  ++GRELDG+PM + L T    S +     + +K+     + +Q +R P+   +  +N+D V R+ 
Sbjct:  124 TRTVENK--PTGAGMLAQGS--TVDSTISPIQGFRVEAKNLLPSVTIDDVYELFSGV-GSLRSCNLVHPGQAEVIFNSPQDAQSAVTRYNGRELDGRPMIVTLTTPLASSSTTTLKGSALKSSGGFAAAVQNSRAPSLNGRGNLNRDVVNRAW 271
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Match: A0A4Z2DD58 (Polymerase delta-interacting protein isoform 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_002181 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.201e-25
Identity = 64/166 (38.55%), Postives = 101/166 (60.84%), Query Frame = 2 
Query:  698 SSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACE-SVSRDSS--------------NNEIKAK-ISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            S++T    VSPIQG+R+E++NL P V +DDV+ELF+S+ G LR C + RPG AEV++   SDA +AI+ ++GRELDG+PM + L T   E S  RD+S                E +AK + +  +N+     ++++ D V ++++  S   S  +++P  FSV+L
Sbjct:  141 STSTSGPKVSPIQGFRVEIRNLQPSVTLDDVFELFSSV-GSLRLCTVTRPGQAEVIYNHSSDALEAIERYNGRELDGRPMRVSLTTPVSEISNERDTSARLASRLGPNYGRKQTETQAKQVIRESLNKSSGVPIEVDADVVRKALFNVSSSGSVQSRRPVDFSVSL 305
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Match: G7YK17 (Polymerase delta-interacting protein 3 OS=Clonorchis sinensis OX=79923 GN=CLF_109960 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.217e-25
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 2 
Query:  722 VSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEI---------------KAKISKIQVNRKPAHT---MQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            VSPIQG+R+E++NL P V +DDV+ELF+S+ G LR CNL+RPG+AEVVF + SDA +A+  ++ RELDG+PMN+ L+T   +S +  S ++ I               +A     Q N   A +   M+++ D V ++++  +   S   + P  F+V+L
Sbjct:   14 VSPIQGFRVEIRNLQPSVTLDDVFELFSSI-GTLRLCNLIRPGHAEVVFNEASDAREAVRRYNNRELDGRPMNVALITQVPDSPAGGSPSSRIAFRLGPSHGGAGFNTRASGQWQQRNASGAQSGPRMEVDMDVVRKALFHVNAGASG-PRGPVDFNVSL 171
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2])

HSP 1 Score: 68.9366 bits (167), Expect = 4.769e-12
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 2 
Query:  653 ENKKPALSTAKFAQKSSTTVNSLV------SPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            +N +P   T    Q +S   +SL       SP++G +I V NLHP+V  +D+ ELF  + G L+   LV+ G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  260 QNLQPVSRTMVTGQAASGNGSSLTPPQPVFSPLEGTKITVNNLHPRVTEEDIVELF-CVCGALKRARLVKVGVAEVVFVRKDDAISAYRKYNNRCLDGQPMKCNL 363
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Match: rbm14a (RNA-binding protein 4B-like [Source:NCBI gene;Acc:103040733])

HSP 1 Score: 51.2174 bits (121), Expect = 2.168e-6
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  728 PIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVR------PGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            P+   ++ V NL      DD++ELF+   G++  C+ V+       GYA V   +  DAEKAI+  HG    G+P++++L
Sbjct:   79 PLNSIKVFVGNLSALCTSDDLHELFSRF-GNVLECDKVKTKPSSSAGYAFVHMERKEDAEKAIEALHGSSFKGRPLSVEL 157
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Match: rbm14a (RNA-binding protein 4B-like [Source:NCBI gene;Acc:103040733])

HSP 1 Score: 50.8322 bits (120), Expect = 2.772e-6
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  728 PIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVR------PGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            P+   ++ V NL      DD++ELF+   G++  C+ V+       GYA V   +  DAEKAI+  HG    G+P++++L
Sbjct:   79 PLNSIKVFVGNLSALCTSDDLHELFSRF-GNVLECDKVKTKPSSSAGYAFVHMERKEDAEKAIEALHGSSFKGRPLSVEL 157
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Match: alyref (Aly/REF export factor [Source:NCBI gene;Acc:103044901])

HSP 1 Score: 49.6766 bits (117), Expect = 4.026e-6
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRP------GYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ V NL   V+  D+ ELF    G L+   +         G A+V F + SDA KA+ +++G  LDG+PMN++LVT+  ++  R
Sbjct:  122 GGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKSDALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRR 207
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Match: alyref (Aly/REF export factor [Source:NCBI gene;Acc:103044901])

HSP 1 Score: 48.9062 bits (115), Expect = 6.930e-6
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 2 
Query:  737 GYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRP------GYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSR 979
            G ++ V NL   V+  D+ ELF    G L+   +         G A+V F + SDA KA+ +++G  LDG+PMN++LVT+  ++  R
Sbjct:  122 GGKLLVSNLDFGVSDADIQELFAEF-GTLKKAAVHYDRSGRSLGTADVHFERKSDALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRR 207
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Sea Lamprey
Match: poldip3 (polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2])

HSP 1 Score: 71.2478 bits (173), Expect = 1.834e-13
Identity = 45/155 (29.03%), Postives = 88/155 (56.77%), Query Frame = 2 
Query:  713 NSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLV---------TAACESVSRDSSNNEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNK-KPFKFSVTL 1147
            N+  SP++G ++ V+NLHP+V+ +D+ ELF++  G L+   LV+ G AEVV+ +  DA  A ++++ R LDG+PM  +L          +A  + +S   S      + +  Q +++ A T +++ D +  +++  +  +SK N  +P  F++ +
Sbjct:  316 NTGPSPLEGVKLTVENLHPEVSEEDIVELFSAY-GALKRARLVQVGIAEVVYVRKDDAITAYEKYNNRYLDGQPMKCQLHLSKHDQQPNSALKKRLSDGPSTASYMQQTAWRQESKRAASTTELDPDVIQWALFKST--SSKANTFRPTAFNIKI 467
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Nematostella
Match: EDO40433 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S745])

HSP 1 Score: 71.2478 bits (173), Expect = 1.762e-13
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2 
Query:  722 VSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESV 973
             +P    R+ + NLHP V+  D+ ELF ++ G L+SC ++R G AEVV+    DA  A   +H R LDG+PM  KL      +V
Sbjct:  215 TTPQTSTRVTISNLHPAVSRQDIEELFGAI-GVLKSCKMLRAGMAEVVYTTKEDAVTAYARYHNRNLDGQPMQCKLSVMPSSAV 297
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Medaka
Match: poldip3 (DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:101156823])

HSP 1 Score: 68.1662 bits (165), Expect = 1.068e-11
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 2 
Query:  674 STAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            STA+    + T      SP++G +I V NLHP+V  +D+ ELF  + G L+   LV+ G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  303 STAETITTAPTPPQPTFSPLEGTKITVNNLHPRVTEEDIVELF-CVCGALKRARLVKVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKCNL 393
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Medaka
Match: poldip3 (DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:101156823])

HSP 1 Score: 67.0106 bits (162), Expect = 1.426e-11
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  725 SPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKL 949
            SP++G +I V NLHP+V  +D+ ELF  + G L+   LV+ G AEVVF +  DA  A  +++ R LDG+PM   L
Sbjct:  232 SPLEGTKITVNNLHPRVTEEDIVELF-CVCGALKRARLVKVGVAEVVFVRKEDAVSAYRKYNNRCLDGQPMKCNL 305
[Close]
BLAST of Polymerase delta-interacting protein 3 vs. Planmine SMEST
Match: SMESG000011791.1 (SMESG000011791.1)

HSP 1 Score: 613.224 bits (1580), Expect = 0.000e+0
Identity = 374/376 (99.47%), Postives = 375/376 (99.73%), Query Frame = 2 
Query:   20 MKNFSTRLGYVNNEGISDARQVLAAKRXXXXXXXXXXXXXXXXXXXXXXXXFVDARMLISNRPQNSNYQNSKNRQQNINRSQLSNRLKIEPPLDFTIPKKTVKNNLYVXXXXXXXXXXXXKPVVSNSRISLSTNKFSGKNFCDPRSSQGIFSSHMNVPISHXXXXXXXXXXXXXXXXRSSLGMSEVIEPKRIRDSSVECLKFTVVNTTSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 1147
            MKNFSTRLGYVNNEGISDARQVL+AKRNNNFNENNAGNRKNYGNNNRNAVNFVDARMLISNRPQNSNYQNS NRQQNINRSQLSNRLKIEPPLDFTIPKKTVKNNLYVQDNFQQNNFQANKPVVSNSRISLSTNKFSGKNFCDPRSSQGIFSSHMNVPISHNPIKKINDNIPNNLLKRSSLGMSEVIEPKRIRDSSVECLKFTVVNTTSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL
Sbjct:    1 MKNFSTRLGYVNNEGISDARQVLSAKRNNNFNENNAGNRKNYGNNNRNAVNFVDARMLISNRPQNSNYQNSNNRQQNINRSQLSNRLKIEPPLDFTIPKKTVKNNLYVQDNFQQNNFQANKPVVSNSRISLSTNKFSGKNFCDPRSSQGIFSSHMNVPISHNPIKKINDNIPNNLLKRSSLGMSEVIEPKRIRDSSVECLKFTVVNTTSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHPQVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRELDGKPMNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHTMQINKDAVFRSMYAKSMDTSKVNKKPFKFSVTL 376
The following BLAST results are available for this feature:
BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
POLDIP31.066e-1230.32DNA polymerase delta interacting protein 3 [Source... [more]
POLDIP31.093e-1230.32DNA polymerase delta interacting protein 3 [Source... [more]
POLDIP31.125e-1230.32DNA polymerase delta interacting protein 3 [Source... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CG69613.944e-1345.83gene:FBgn0030959 transcript:FBtr0074660[more]
CG182594.875e-1345.83gene:FBgn0030956 transcript:FBtr0074661[more]
Ref13.485e-629.90gene:FBgn0010774 transcript:FBtr0081642[more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
poldip31.732e-1140.00polymerase (DNA-directed), delta interacting prote... [more]
poldip32.212e-1140.00polymerase (DNA-directed), delta interacting prote... [more]
poldip32.600e-1140.00polymerase (DNA-directed), delta interacting prote... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
nop24.908e-1244.00NOP2 nucleolar protein [Source:Xenbase;Acc:XB-GENE... [more]
ralgds6.675e-635.63ral guanine nucleotide dissociation stimulator [So... [more]
ralgds6.818e-635.63ral guanine nucleotide dissociation stimulator [So... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Poldip32.210e-1433.55polymerase (DNA-directed), delta interacting prote... [more]
Poldip32.830e-1433.55polymerase (DNA-directed), delta interacting prote... [more]
4931428L18Rik2.186e-636.78RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:... [more]
4931428L18Rik2.186e-636.78RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:... [more]
4931428L18Rik2.186e-636.78RIKEN cDNA 4931428L18 gene [Source:MGI Symbol;Acc:... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 2
Match NameE-valueIdentityDescription
sp|Q8BG81|PDIP3_MOUSE1.980e-1333.55Polymerase delta-interacting protein 3 OS=Mus musc... [more]
sp|Q9BY77|PDIP3_HUMAN5.117e-1230.32Polymerase delta-interacting protein 3 OS=Homo sap... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5J4NAK96.268e-2639.41Polymerase delta-interacting protein 3 (Fragment) ... [more]
W6U4V67.839e-2643.14Polymerase delta-interacting protein 3 OS=Echinoco... [more]
A0A068X1Z71.055e-2543.14Polymerase delta interacting protein 3 OS=Echinoco... [more]
A0A4Z2DD581.201e-2538.55Polymerase delta-interacting protein isoform 1 OS=... [more]
G7YK171.217e-2538.75Polymerase delta-interacting protein 3 OS=Clonorch... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
poldip34.769e-1239.05polymerase (DNA-directed), delta interacting prote... [more]
rbm14a2.168e-633.75RNA-binding protein 4B-like [Source:NCBI gene;Acc:... [more]
rbm14a2.772e-633.75RNA-binding protein 4B-like [Source:NCBI gene;Acc:... [more]
alyref4.026e-635.63Aly/REF export factor [Source:NCBI gene;Acc:103044... [more]
alyref6.930e-635.63Aly/REF export factor [Source:NCBI gene;Acc:103044... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
poldip31.834e-1329.03polymerase (DNA-directed), delta interacting prote... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO404331.762e-1340.48Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
poldip31.068e-1141.30DNA polymerase delta interacting protein 3 [Source... [more]
poldip31.426e-1145.33DNA polymerase delta interacting protein 3 [Source... [more]
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BLAST of Polymerase delta-interacting protein 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000011791.10.000e+099.47SMESG000011791.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021993 ID=SMED30021993|Name=Polymerase delta-interacting protein 3|organism=Schmidtea mediterranea sexual|type=transcript|length=1680bp
ATAAAATTTAATTGTAGTTATGAAGAATTTTAGTACACGTTTGGGATATG
TAAATAATGAAGGCATTTCTGATGCTAGACAGGTTTTAGCAGCAAAGCGA
AATAACAATTTTAATGAAAATAATGCTGGAAATAGAAAAAACTATGGAAA
TAATAACAGAAACGCAGTAAATTTTGTGGATGCCAGAATGCTGATATCTA
ATCGTCCGCAAAATTCAAATTACCAGAATTCAAAAAATCGTCAACAAAAC
ATAAATCGCTCTCAATTATCTAATCGTTTAAAAATTGAACCACCATTAGA
TTTTACAATTCCTAAGAAAACTGTGAAAAATAATCTTTATGTGCAAGATA
ATTTCCAACAAAATAATTTTCAAGCTAATAAACCCGTAGTTTCCAATTCT
CGAATCAGTTTGTCAACAAATAAATTTAGTGGGAAAAATTTCTGTGACCC
TAGGTCTTCACAGGGTATATTCTCAAGCCATATGAATGTACCAATTTCTC
ATAATCCCATAAAGAAGATTAATGACAATATTCCAAATAATTTATTGAAA
CGTTCTAGTTTAGGAATGAGCGAAGTTATTGAACCGAAACGCATAAGAGA
TAGTAGCGTTGAGTGTTTAAAATTCACTGTGGTTAACACTACATCAGTAG
TGGAAAATAAAAAGCCCGCTTTGTCCACTGCGAAATTCGCACAGAAATCT
AGTACAACAGTCAACAGTCTTGTTTCTCCAATACAAGGATATCGAATTGA
AGTTAAAAACCTTCACCCACAAGTTAATGTTGACGACGTATATGAATTGT
TCACTAGTTTGAAAGGTGACTTGCGTTCCTGCAATTTAGTCCGGCCTGGC
TATGCTGAAGTTGTATTTAGAAAATTATCCGATGCTGAAAAAGCAATTGA
TGAATTTCACGGGAGAGAGTTAGACGGCAAACCGATGAATCTTAAATTAG
TGACTGCCGCATGTGAATCTGTGTCTCGTGACTCATCAAACAATGAGATT
AAGGCGAAAATCTCGAAAATACAAGTCAACCGCAAGCCAGCTCACACGAT
GCAAATCAACAAAGATGCCGTGTTCAGGAGTATGTATGCAAAATCGATGG
ATACTTCTAAGGTAAACAAGAAACCGTTCAAGTTTTCTGTTACTCTGTAA
TTATTTTTATACAATAAATTGGCAGAAAGTTGTGTTTATTCATGTTGAAT
AATATTAATAATAATCATAATTGTTAATTGTTATCGTATCATTGTGATGG
AAATTGTCAGAGGAGACACGTTCACTATTTCACTTGTACATTTATTTTGG
GAATGAATATTTTATTGAATTTTGCTGTTTGATATAATTATTACATTGAT
TTTGCTGATTCACACGCGTTCATTTGCGTCGTTGGATTCGTGTGTGTGTA
TGTGTATGTGCGATCGTGATGTGTATCATTCCTATTGGTTGATTATTACT
CGTCTGTAATTGGATGTTGCATTTGATGGCATTTTTATTGCAATGACTGT
TTGAATTTTTGGAGAATTATTCTCAACAATAATAATATCGAATCGTACCT
TTATAGGAATATCGATTGTCTAAATATATTTTGCATTGTAAAAATATTTA
GGTGGGTTGGACTGTAATTAGCTTGGTTTTTCTTTGTATATAAATTTTAT
TGACTTTAGCAGGATTTGATTGGTTTCAAT
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protein sequence of SMED30021993-orf-1

>SMED30021993-orf-1 ID=SMED30021993-orf-1|Name=SMED30021993-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=377bp
MKNFSTRLGYVNNEGISDARQVLAAKRNNNFNENNAGNRKNYGNNNRNAV
NFVDARMLISNRPQNSNYQNSKNRQQNINRSQLSNRLKIEPPLDFTIPKK
TVKNNLYVQDNFQQNNFQANKPVVSNSRISLSTNKFSGKNFCDPRSSQGI
FSSHMNVPISHNPIKKINDNIPNNLLKRSSLGMSEVIEPKRIRDSSVECL
KFTVVNTTSVVENKKPALSTAKFAQKSSTTVNSLVSPIQGYRIEVKNLHP
QVNVDDVYELFTSLKGDLRSCNLVRPGYAEVVFRKLSDAEKAIDEFHGRE
LDGKPMNLKLVTAACESVSRDSSNNEIKAKISKIQVNRKPAHTMQINKDA
VFRSMYAKSMDTSKVNKKPFKFSVTL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 242..309
e-value: 4.9E-11
score: 52.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 245..306
e-value: 3.4E-10
score: 39.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 241..313
score: 12.97
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 205..324
e-value: 5.6E-13
score: 51.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..84
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 120..338
NoneNo IPR availablePANTHERPTHR19965:SF35POLYMERASE DELTA-INTERACTING PROTEIN 3coord: 120..338
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 231..316