Integrase catalytic domain-containing protein

Overview
NameIntegrase catalytic domain-containing protein
Smed IDSMED30021915
Length (bp)2407
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Integrase catalytic domain-containing protein (SMED30021915) t-SNE clustered cells

Violin plots show distribution of expression levels for Integrase catalytic domain-containing protein (SMED30021915) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Integrase catalytic domain-containing protein (SMED30021915) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Integrase catalytic domain-containing protein (SMED30021915) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021915

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30021915SMESG000080985.1 SmedASXL_007154SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30021915SMESG000080985.1 dd_Smed_v4_22202_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021915SMESG000080985.1 dd_Smed_v4_22202_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Match: A0A2B4RBG6 (Nucleotide-binding oligomerization domain-containing protein 2 OS=Stylophora pistillata OX=50429 GN=Nod2 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.673e-70
Identity = 95/247 (38.46%), Postives = 128/247 (51.82%), Query Frame = 2 
Query: 1001 KELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*---KCANDCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFV--IDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            K  LL   P +D EG +R N  + + E L  +    II+  KS+VTK I K+ HE  +H  G   +L  L+ ++WII  R  I    K  N+C RR  +   Q+MAP+        LRAF    VD+ G F T       R KR +CLF C+ SR V++E A    T AFL AF R  NRRG+P+ +L DNG N V     + + V  +D  +++         W  NPP APHFGG  E ++K AK
Sbjct: 1567 KSKLLGLQPWLDEEGQVRCNRRLRYAEFLPQDACFLIILPRKSYVTKLIDKHYHEKDDHAGGTNQLLAALSTRFWIISGREEICEWEKECNECRRRKAKAAKQIMAPLPQIRLRYSLRAFAQTAVDYGGPFITVQARRPRRQKRNLCLFTCLASRAVYVEMAYALDTDAFLNAFYRMVNRRGLPREMLCDNGGNLVGGNRELSDLVKELDQEKIAKSTANQGIKWQSNPPHAPHFGGAHEIMIKGAK 1813

HSP 2 Score: 97.8265 bits (242), Expect = 5.673e-70
Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 3 
Query: 1725 AMKAIMTILDVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLL---MIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAFWKRWLTK------LTRQN*NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKL 2198
            A+ A +  +D+ DEEL   F  AE LLNSRPL  Q  +  ++V +TPNH L   +   +  +    T F  K     RWRR+QEL +    RW+ +      + R+  +   +IK   VV V+      G WP+G+++E Y GKDG VRI K+    + ++RP+ KL
Sbjct: 1815 AVYATLGNVDITDEELMTAFTGAEALLNSRPLTYQSANPEDEVPLTPNHFLFGQVGGPFAPDSVDETTFNPKK----RWRRVQELVRHIRHRWIREWLPTLNVRRKWLHVGRDIKVDDVVLVMSPTTPRGYWPLGRIVEVYLGKDGHVRIAKVQVGKEELLRPVTKL 1977

HSP 3 Score: 57.3806 bits (137), Expect = 5.673e-70
Identity = 51/169 (30.18%), Postives = 78/169 (46.15%), Query Frame = 3 
Query:  510 QQETIPIQWHNVLTKENLADLISRGLQARQMVDSDM*WNGPKFLRKSEESWPKMEL-----IESSEVXXXXXXXXXXXXDLEKRLIRK*KEFRQC----SMRI*CKKKLIASK*QHFYQRFIMNIRLNENRRICGTLTLDEIKRVKIKIIQNEQEKYFKREIDKLKNEE 989
            Q  T P +WH V TKEN AD  +RG++   M      W+GP F++K E  W K ++      E++E+K          R+ E   +    E  Q       R     KLI  + Q +  RF+ N R     R  G L L++I+ + +++I++ Q K F  E   L+  E
Sbjct: 1399 QSLTNPKEWHFVPTKENPADFTTRGMRVSDMAKERKWWSGPDFVQKEESHWAKNQIDTEKVSEATEIKKATPRSSQTGRNNENWTMTSLHEDGQLWRLDPKRFSSWTKLI--RIQAWVHRFVDNCRSPNRER--GDLNLEKIEDIAVQVIKDAQRKAFPIEYLALQRRE 1563

HSP 4 Score: 22.3274 bits (46), Expect = 5.673e-70
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  472 ARNYKHFVANRI 507
            +R YK FVANR+
Sbjct: 1384 SRRYKPFVANRV 1395
[Close]
BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Match: A0A085MSJ2 (Integrase catalytic domain-containing protein OS=Trichuris suis OX=68888 GN=M514_27632 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.111e-64
Identity = 86/248 (34.68%), Postives = 142/248 (57.26%), Query Frame = 2 
Query:  998 SKELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCANDC--CRRI*-QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVI--DNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            +K  +L   P +D  G++R+   +   + L  + K+PII+ +K  +++ +++ +H TL H+A +     E+ Q+YWIIK R+ + +  N+C  C+R+  +  T +MAP+           F HV VD+AG         R   KRY+CLF C+ +R VH+E + +  T +FL AF RFTNRRG+P  V  DN TNFV         +   +  +++ ++ +    W+F+PP APHFGG++E +++TAK
Sbjct:  820 NKSTILTLMPFVDVVGVLRAQGRLERAD-LPFDAKHPIILPNKHNLSRMLIRESHLTL-HHASVEMTWCEVRQRYWIIKGRQAVKRVINECFYCKRLRAKPMTPLMAPLPQTRLEAYSPPFTHVGVDYAGPIVVSV--RRKTEKRYICLFTCLTTRAVHLELSYSLDTDSFLMAFRRFTNRRGVPSTVYSDNATNFVAGRKETQRGLQLWNQQKINDEMIQRRIRWVFSPPGAPHFGGIWERMIRTAK 1063

HSP 2 Score: 88.5817 bits (218), Expect = 7.111e-64
Identity = 54/171 (31.58%), Postives = 92/171 (53.80%), Query Frame = 3 
Query: 1719 QSAMKAIMTILD---VNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNEL--RLRWRRIQELAQAFWKRWL-----TKLTRQN*-NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKL 2198
            ++A  A++ +L+   V+DE L       E LLN+RPL    +D  +   +TPNH L+    R+  HI    + ++E+  + +WR  Q + ++FWKRWL     + + R+     + +++ G +V V+D +   G WP+G+V E + G DG VR  K+  +     RP+ KL
Sbjct: 1060 RTAKDALLRVLNGRAVSDEVLLTALSEVESLLNARPLTHLSVDPSDPEPLTPNHFLL---GRAHPHIPPDIVAESEVISKRKWRVSQAIVESFWKRWLKCYVPSLIERKKWLKHRPQLREGDIVVVVDDRIPRGFWPLGRVQECFSGTDGVVRTAKVATKFGTYTRPVTKL 1227

HSP 3 Score: 55.4546 bits (132), Expect = 7.111e-64
Identity = 47/168 (27.98%), Postives = 75/168 (44.64%), Query Frame = 3 
Query:  525 PIQWHNVLTKENLADLISRGLQARQMVDSDM*W-NGPKFLRKSEESWP------KMELIESSEVXXXXXXXXXXXXDLEKRLIRK*KEFRQCSMRI*CKKKLIASK*QHFYQRFIMNIRLNENRRICGTLTLDEIKRVKIKIIQNEQEKYFKREIDKLKNEEPIDRKS 1007
            P QW  V +K+N AD+ SRG++   + D+   W  GP+FL K    WP           ++ E+           +     LI +  + R         +++IA     +  RFI N R   ++   G LTL EI    +  I+  Q++ F+ EID L+  +P+  KS
Sbjct:  668 PKQWRYVPSKQNPADVCSRGMKT-DVRDAYRRWLEGPEFLGKETNEWPVQCNDKSTISAQAEELLPKWAGHINHTKGPVDELISRISDIRTL-------RRIIA-----YANRFIKNCRSRSHKVTLGQLTLVEIDEANVICIKTVQKEVFQEEIDCLRQGQPVANKS 822
[Close]
BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Match: A0A2B4R7B3 (DUF5641 domain-containing protein OS=Stylophora pistillata OX=50429 GN=AWC38_SpisGene22375 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.200e-58
Identity = 84/246 (34.15%), Postives = 114/246 (46.34%), Query Frame = 2 
Query: 1001 KELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI---*KCANDCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETATYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFV--IDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            K  L+K +P ID EG+IRS+  +     L  +T+ PII+    WVTK IVK+ HE  NH  G+   L +L++++WII  R  I    +  N+C R   +   Q+MAP+         R F    VDF G F T    G+ + K                                  +RRG+ K V  D GTNFV AV  +   V  +D   + TK  E    W F PP+APHFGG  E ++K AK
Sbjct:  998 KSQLIKLNPCIDDEGVIRSDGRLKFAGFLPCDTRFPIILPRGHWVTKLIVKHYHERGNHAVGLNFTLFQLSKRFWIIAAREEIHQRDRECNECKRERNKPACQIMAPLPQMRLHFSFRPFAQTAVDFVGPFYTVQGRGKPQQK----------------------------------SRRGVLKEVTSDRGTNFVGAVSVLKKLVRQLDRKHLQTKTVELGGTWRFKPPAAPHFGGTHEIMVKAAK 1209

HSP 2 Score: 114.775 bits (286), Expect = 1.200e-58
Identity = 68/172 (39.53%), Postives = 98/172 (56.98%), Query Frame = 3 
Query: 1719 QSAMKAIMTILDVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLL---MIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAFWKRWLTKL-----TRQN*NFQ-EEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKLMTI 2207
            + A  A++   DVNDEEL  VF R E LLNSRPL  Q  D R+DV +TPNH L   M  ++ +E  + T  L     R RWR++Q++    W+RWL ++     +R     +  ++K   VV VI      G+WP+G ++E YPG+DG   + K+ C  K V+RPI KL+ +
Sbjct: 1209 KKATYAVVGERDVNDEELITVFARVESLLNSRPLTYQGSDPRDDVPLTPNHFLHGQMGRQFATEA-VETTTL---HPRQRWRKVQDITSRVWRRWLKEVVPAPNSRPKWTSECRDLKVEDVVLVIQPDTPRGRWPLGWIVEVYPGRDGHTLVAKVTCGVKTVMRPINKLVPL 1376

HSP 3 Score: 41.2022 bits (95), Expect = 1.200e-58
Identity = 46/187 (24.60%), Postives = 81/187 (43.32%), Query Frame = 3 
Query:  510 QQETIPIQWHNVLT--KENLADLISRGLQARQMVDSDM*WNGPKFLRKSEESWPKMELIE-SSEVXXXXXXXXXXXXDLEKRLIRK*KEFRQCSMR--I*CKKKLIASK*QHFYQRFI----------------MNIRLNENRRICGTLTLDEIKRVKIKIIQNEQEKYFKREIDKLKNEEPIDRKS 1007
            Q  T+P QW +V T  KEN ADL +RG+   ++    + W+GP +L      W K ++ +  SE+   RN  + +  +    L+        C+++     K+     + +   +RF                  N+R  +NR     L  +E+K  + +I++  Q   F  E   L + +PI +KS
Sbjct:  820 QMFTVPSQWQHVSTSTKENPADLCTRGVTPSELAKCSLWWSGPDWLTDDFSKWSKTKVPDRPSEMPEMRNSKRKEDMNAYATLM-------TCNLQKGTASKQSCTLKEWRLDPKRFFNWTRLVRVHARVRRVLQNMRNRDNRNETMELLPEELKDAEGEIVRLAQRNAFCDEYTALSSGKPIPKKS 999
[Close]
BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Match: A0A085NQS3 (Integrase catalytic domain-containing protein OS=Trichuris suis OX=68888 GN=M514_10175 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.331e-55
Identity = 89/245 (36.33%), Postives = 132/245 (53.88%), Query Frame = 2 
Query: 1010 LLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCANDC--CRRI*-QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVI--DNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAKC 1726
            +L  SP +D +G +R+   +   E L  E K+P+I+  K  +T  ++  AHE L H+  +   L E+ Q++WI K R+ +    + C  C+R+  +I T  MAP+           F  V +D+ G         R + KRY CLF C+ +R VHIE A T  T +FL AF RF +RRG P +V  DNGTN V A   +   +   D  +V   +  +   W F+PPSAPHFGGV+E ++++AK 
Sbjct: 1339 ILTLSPFLDEKGSLRAQGRLERAE-LPYEVKHPLILPSKHALTNMVITEAHERL-HHGSVELTLCEIRQRFWIPKCRQSVKGVIHACSFCKRLRSKIYTPFMAPLPTARLQPFQPPFSCVGIDYFGPVNVTI--RRSQEKRYGCLFTCLSTRAVHIEIAFTLNTDSFLMAFRRFMDRRGTPSVVYSDNGTNLVAAEKELRKCLESWDQLKVHENVVRHGIQWHFSPPSAPHFGGVWERMIRSAKA 1579

HSP 2 Score: 105.145 bits (261), Expect = 2.331e-55
Identity = 65/176 (36.93%), Postives = 96/176 (54.55%), Query Frame = 3 
Query: 1719 QSAMKAIMTILD---VNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNEL--RLRWRRIQELAQAFWKRWLTKLT------RQN*NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKLMTIYE 2213
            +SA  A+  IL+    +DE L  VFV  E LLNSRPL    ID  +   +TPNH L+    R   H+    + + ++  R +WR  Q + ++FW+RWL +        R+    +  +K G +V V+D +   G WP G VIE YPGKDG VR+ KI  +    +RP+ KL +++E
Sbjct: 1575 RSAKAALHKILNGRATSDEVLLTVFVEVESLLNSRPLTHISIDSSDPEPLTPNHFLL---GRPCPHVPPDVVTEIDISSRRKWRAAQAIVESFWRRWLREYVPSLIERRKWLRARRNLKKGDIVVVVDPRTPRGHWPFGTVIECYPGKDGIVRVAKIKTKYGMYVRPVTKL-SLFE 1746
[Close]
BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Match: A0A2G8LCX0 (Integrase catalytic domain-containing protein OS=Stichopus japonicus OX=307972 GN=BSL78_04960 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.157e-55
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 2 
Query: 1031 IDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*K---CANDCCRRI*QIKTQVMAPM-SAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVA----VPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            +D +G++RS+  +   E +  +T+ PII+  K  VT+ IVK  HE   H AG  H L  L+ KYW+I  R  I +     N+C R   +   Q+MAP+  +    + LRAF  V+VDFAG F TK   G+++ KRY+CLF CMK+R VH+E A    T +F+    RFT+RRG+P  +  DNGTNFV A    +   D       +  T  K     W+ NPP APHFGG+ ES++K+AK
Sbjct:    1 MDEDGLLRSSGRLSLNEAIPYDTRCPIILPRKHPVTRLIVKEHHEEGKHIAGTNHTLALLSNKYWLIGGREEIREWENACNECKRGKPRGGQQIMAPLPKSRTNVDTLRAFDKVSVDFAGPFLTKQGRGKIKTKRYLCLFTCMKTRAVHLEMAFGLDTDSFINCLYRFTSRRGIPSEIRSDNGTNFVGARNEFIKLFDTIDKAKVERDTSKKGINWKWVLNPPLAPHFGGIHESMIKSAK 240

HSP 2 Score: 72.7886 bits (177), Expect = 4.157e-55
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 3 
Query: 1719 QSAMKAIMTIL---DVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLL---MIAEWRSEMHI-NTAFLGKNELRLRWRRIQELAQAFWK 1988
            +SA +AI  IL   D+ DEEL +  V AE L+NSRP+  Q  + ++DV +TPNH L       + +EM I NT+F      R RWRR+QEL + FW+
Sbjct:  237 KSAKRAIYAILENADITDEELFSAIVGAEGLINSRPITYQSANTKDDVPLTPNHFLHGQSGGRFAAEMIIDNTSF----NPRKRWRRVQELVKHFWR 329
[Close]
BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Match: SMESG000063595.1 (SMESG000063595.1)

HSP 1 Score: 232.646 bits (592), Expect = 8.342e-92
Identity = 111/242 (45.87%), Postives = 161/242 (66.53%), Query Frame = 2 
Query: 1010 LLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCAN---DCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            L++ +P++D +GI+RS+S I + E L   T+ PII+SD+SW+ + I++  H    HYAG+ + L ELN++YW++  R++I KC     +C RR  +   Q+MAP+ +F F E L+AF  + VDF+G FET    G+ R KRYMCLF C+K+R VH+E A    T AF+ AF+RF  RR  P ++L DNGTNFV A   V    +D+Y+ +  +  N+  WIFNPP APHF GVFE+L+K++K
Sbjct: 1736 LIELNPVLDDDGIVRSDSRIINAEFLENNTRYPIILSDESWIARLIIRELHVKNKHYAGVNYTLGELNREYWVVCARKLIKKCIKGCFECRRRKAKGMEQIMAPLPSFRFQESLQAFARIAVDFSGPFETIQGRGKTRQKRYMCLFTCLKTRAVHLEVAYALDTDAFILAFIRFMGRRRKPLMILSDNGTNFVWATNEVQEIKVDSYRFNKFMSGNDIRWIFNPPLAPHFEGVFEALIKSSK 1977

HSP 2 Score: 125.561 bits (314), Expect = 8.342e-92
Identity = 64/169 (37.87%), Postives = 104/169 (61.54%), Query Frame = 3 
Query: 1719 QSAMKAIMTILDVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAFWKRWLTKLT------RQN*NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKLMTI 2207
            + A++ I+   D++DEEL +VF++ E LLN+RPL TQC D +ED+++TPNH L++ + ++E  I     G +  R+ WRRI E+   FW+RW  ++       R+  N +  I  G +VW+++     GK P+ ++ E  P +DG+VR+VKI  +GK   RPI K+  +
Sbjct: 1977 KKALQVIVGSADLSDEELNSVFIKIESLLNARPLTTQCSDSKEDLVLTPNHFLLLKQPQNEDEILNPKTGASYRRI-WRRILEVTDHFWERWKREIVPLWSTRRKWWNEKNNIAVGDIVWLLEKSTYDGKGPLARICEVVPSQDGRVRVVKIRVDGKVKCRPISKIFPL 2144

HSP 3 Score: 53.1434 bits (126), Expect = 1.079e-6
Identity = 27/56 (48.21%), Postives = 33/56 (58.93%), Query Frame = 3 
Query:  510 QQETIPIQWHNVLTKENLADLISRGLQARQMVDSDM*WNGPKFLRKSEESWPKMEL 677
            Q+ET   QW  V TK N AD+ISRG   +++   +    GPKFL  SE  WPK EL
Sbjct: 1572 QEETTAGQWRYVPTKMNPADMISRGATIKELQGREEWLGGPKFLSSSEGEWPKTEL 1627
[Close]
BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Match: SMESG000041215.1 (SMESG000041215.1)

HSP 1 Score: 222.631 bits (566), Expect = 2.199e-89
Identity = 107/228 (46.93%), Postives = 150/228 (65.79%), Query Frame = 2 
Query: 1052 RSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCAN---DCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            +S+S I + E L  +T+  II+SD+SW+ + I+K  H     YAG+ H L ELN++YW++  R++I KC     +C RR  +   Q+MAP+ +F F EPL+AF  + VDFAG  ET    G+ R KRYMCLF C+++R VH+E A    T AF+RAF+RF  RR  P ++L DNGTNFV A   V    +D+Y+ +  +  N+  WIFNPP APHFGGVFE+L+++AK
Sbjct: 1243 KSDSRIINAEFLENKTRYLIILSDESWIARLIIKELHVKNKDYAGVNHTLGELNREYWVVCARKLIKKCMKGCFECRRRKAKGMEQIMAPLPSFRFQEPLQAFARIAVDFAGPLETIQGRGKTRQKRYMCLFTCLQTRAVHLEVAHALDTDAFIRAFIRFMGRREKPLMILSDNGTNFVGATNKVQEIKVDSYRFNKFMSGNDIIWIFNPPLAPHFGGVFEALIESAK 1470

HSP 2 Score: 127.487 bits (319), Expect = 2.199e-89
Identity = 65/160 (40.62%), Postives = 101/160 (63.12%), Query Frame = 3 
Query: 1719 QSAMKAIMTIL---DVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAFWKRWLTKLT------RQN*NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK 2171
            +SA KA+  I+   D++DEEL +VF++ E LLN+RPL  QC D +ED+++TPNH L++ + ++E  I     G +  R RWRRI E+   FW+RW  ++       R+  N +  I  G +VW+++     GKWP+ ++ E  PG+DG+VR+VKI  +GK
Sbjct: 1467 ESAKKALQVIVGSADLSDEELNSVFIKVESLLNARPLTIQCSDSKEDLVLTPNHFLLLKQPQNEDEILNPKTGAS-YRRRWRRILEVTDHFWERWKREIVPLWSTRRKWWNEKNNIAVGDIVWLLEKSTYDGKWPLARICEVVPGQDGRVRVVKIRVDGK 1625

HSP 3 Score: 54.299 bits (129), Expect = 4.562e-7
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 3 
Query:  501 SNKQQETIPIQWHNVLTKENLADLISRGLQARQMVDSDM*WNGPKFLRKSEESWPKMEL 677
            S  Q+ET   QW  V TK N  D+ISRG   +++ D +    GPKFL  SE+ WPK +L
Sbjct: 1077 STIQEETTAGQWRYVPTKMNPTDMISRGATIKELQDREEWLGGPKFLSSSEDEWPKTKL 1135
[Close]
BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Match: SMESG000000866.1 (SMESG000000866.1)

HSP 1 Score: 260.381 bits (664), Expect = 2.142e-84
Identity = 130/245 (53.06%), Postives = 175/245 (71.43%), Query Frame = 2 
Query: 1001 KELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCANDC--CR-RI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETATYW-THAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
            K  L K +PI+    I+ SNS + HTE L +ET+ PII+SDKS + K I+++ +E+LNHYAG+ HVL+ LN+KYWI+K R++I  C + C  CR R  +  TQ+MA + +F  SEPLR FVH  VDF   FET++  G+ RNKRYM LFVC+K+R VHIE A    T AF++AF+RFT+ + MP+++L DNGTNFV A  H+ N VID+Y V  +L  +EC W+FNPPSA HF GVFE+L+K+ K
Sbjct:   16 KSRLWKLTPILYGMKILWSNSRLIHTEFLPLETRYPIILSDKSLIAKLIIRDIYESLNHYAGVQHVLSALNEKYWILKARKLIINCESSCKGCRQRKAKGMTQMMATLPSFRLSEPLRGFVHTAVDFERPFETRAGRGKARNKRYMFLFVCLKTRAVHIELAYKLDTDAFIKAFLRFTSLQEMPQLMLSDNGTNFVGAASHLRNIVIDSYMVEKELSRHECRWLFNPPSASHFEGVFEALIKSTK 260

HSP 2 Score: 73.1738 bits (178), Expect = 2.142e-84
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 3 
Query: 1728 MKAIMTILDVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHI 1910
            M+A+M   DVNDEEL NVF +A+ML+NS PL+ Q  D ++D +ITPNH L +A W+SE  +
Sbjct:  263 MQAVMVDSDVNDEELVNVFTKADMLINSLPLVKQAADTKKDAVITPNH-LAVAGWKSEAAV 322
[Close]
BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Match: SMESG000005924.1 (SMESG000005924.1)

HSP 1 Score: 154.451 bits (389), Expect = 6.510e-69
Identity = 85/242 (35.12%), Postives = 125/242 (51.65%), Query Frame = 2 
Query:  998 SKELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCANDCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETATYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
             K  L++ +PI+D +GI+RS+S I + E L   T+ PII+SD+SW+ + I++  H    HYAG+ H L ELN++YW++  R++I KC                           ++  VH+ V +A                                     T AF+RAF+RF  RRG P ++L DNGTNFV A   V    +D+Y+++  +  N+  WIFNPP APHFG VFE+L+K+AK
Sbjct:  664 EKSKLIELNPILDDDGIVRSDSKIINAEFLENNTRYPIILSDESWIARLIIRELHVKNKHYAGVNHTLGELNREYWVVCARKLIKKC---------------------------IKGEVHLEVAYALD-----------------------------------TDAFIRAFIRFMGRRGKPLMILSDNGTNFVGATNEVQEIKVDSYRLNKFMSGNDIRWIFNPPLAPHFGEVFEALIKSAK 843

HSP 2 Score: 127.487 bits (319), Expect = 6.510e-69
Identity = 68/172 (39.53%), Postives = 106/172 (61.63%), Query Frame = 3 
Query: 1719 QSAMKAIMTIL---DVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAFWKRWLTKLT------RQN*NFQEEIKSGSVVWVIDTKNNYGKWPIGKVIEKYPGKDGKVRIVKILCEGK*VIRPIVKLMTI 2207
            +SA KA+  I+   D++DEEL +VF++ E LLN+RPL TQC D +ED+++TPNH L++ + ++E  I     G +  R RWRRI E+   FW+ W  ++       R+  N +  I  G +VW+++     GK P+ ++ E  PG+DG+VR+VKI  +GK   RPI K+  +
Sbjct:  840 KSAKKALQVIVGSADLSDEELNSVFIKVESLLNARPLTTQCSDSKEDLVLTPNHFLLLKQPQNEDEILNPKNGAS-YRKRWRRILEVTDHFWEHWKREIVPLWSTRRKWWNEKNNIAVGDIVWLLEKSTYNGKRPLARICEVVPGQDGRVRVVKIRVDGKVKCRPISKIFPL 1010
[Close]
BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Match: SMESG000043416.1 (SMESG000043416.1)

HSP 1 Score: 199.519 bits (506), Expect = 3.041e-68
Identity = 103/246 (41.87%), Postives = 146/246 (59.35%), Query Frame = 2 
Query:  998 SKELLLKSSPIIDSEGIIRSNSHIFHTECLLVETKNPIIMSDKSWVTKWIVKNAHETLNHYAGM*HVLNELNQKYWIIKTRRVI*KCAN---DCCRRI*QIKTQVMAPMSAFCFSEPLRAFVHVTVDFAGHFETKSF*GRVRNKRYMCLFVCMKSRVVHIETA-TYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFVVAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAK 1723
             K  L++ +P++D +GI+RS+S I + E L   T+ PII+SD+SW+ + I+K  H    HYAG+ H L +LN+KYW++  R++I KC     +C RR  +   Q+MAP+ +F F EPL+AF  + VDFAG                           VH+E A    T AF+ AF+RF  RRG P ++L DNGTNFV A   V    +D+Y+ +  +  N+  WIFN P APHFGGVFE+L+K+AK
Sbjct:   91 EKSKLIELNPVLDDDGIVRSDSRIINAEFLENNTRYPIILSDESWIARLIIKELHVKNKHYAGVNHTLGKLNRKYWVVCARKLIKKCIKRCFECRRRKAKGMEQIMAPLPSFRFQEPLQAFARIAVDFAGP-------------------------AVHLEVAYALDTDAFIHAFIRFMGRRGKPLMILSDNGTNFVGATNEVQEIKVDSYKFNKFMSGNDIRWIFNSPLAPHFGGVFEALIKSAK 311

HSP 2 Score: 80.1073 bits (196), Expect = 3.041e-68
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 3 
Query: 1719 QSAMKAIMTIL---DVNDEELTNVFVRAEMLLNSRPLLTQCIDGREDVIITPNHLLMIAEWRSEMHINTAFLGKNELRLRWRRIQELAQAF 1982
            +SA KA+  I+   D++DEEL +VF++ E LLN+RPL TQC D +ED+++TPNH L++ + ++E  I     G +  R RWRRI E+   F
Sbjct:  308 KSAKKALQVIVGRADLSDEELNSVFIKVESLLNARPLTTQCSDSKEDLVLTPNHFLLLKQSQNEDEILNPKNGAS-YRRRWRRILEVTDHF 397
The following BLAST results are available for this feature:
BLAST of Integrase catalytic domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2B4RBG65.673e-7038.46Nucleotide-binding oligomerization domain-containi... [more]
A0A085MSJ27.111e-6434.68Integrase catalytic domain-containing protein OS=T... [more]
A0A2B4R7B31.200e-5834.15DUF5641 domain-containing protein OS=Stylophora pi... [more]
A0A085NQS32.331e-5536.33Integrase catalytic domain-containing protein OS=T... [more]
A0A2G8LCX04.157e-5541.25Integrase catalytic domain-containing protein OS=S... [more]
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Integrase catalytic domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000063595.18.342e-9245.87SMESG000063595.1[more]
SMESG000041215.12.199e-8946.93SMESG000041215.1[more]
SMESG000000866.12.142e-8453.06SMESG000000866.1[more]
SMESG000005924.16.510e-6935.12SMESG000005924.1[more]
SMESG000043416.13.041e-6841.87SMESG000043416.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021915 ID=SMED30021915|Name=Integrase catalytic domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2407bp
GCCATTTATTTTAGTTTATATTTTTCCTTACTTTGGTTTTTAAAATCTTT
TGAATTCCGAATATAGTGGGTACTGAAATGACTTGAAGTTCTTGTTCGTA
GAATCTTCAAACGATTTCATTGTTTTCATTATTGCAAATTAAATGTATGA
CAGGATTTTGATTAGTTTCAACTATGAGAATTACTATATCGCTCCAATTG
TTATCGAAATTCTTGATGAATGGTTAATCACTGATTCTACTAATTTACAT
GATCACCTACCTAGTATTTAGGCGTTTTCATACTTGACTTCTTGTTGCCA
TATCCAATTATAATAATTTATCTTAATTTACAAAAGGTTTTGGGTAATTA
AATTAAAATTAAATATTGAATTTAGATATCAATTGGTCTTATTTCATTTA
ATCCTTTGTGTGCGAATAATTGTAGTTATAAGAGTAGTGTGTATACTATC
TACATGACCCCATGGGACTATGCTAGGAATTACAAGCATTTTGTAGCGAA
TCGAATAAACAACAAGAGACAATTCCAATACAATGGCATAATGTTCTGAC
TAAAGAAAATCTGGCAGATCTCATATCTAGAGGATTACAAGCAAGGCAAA
TGGTAGATAGTGATATGTGATGGAACGGGCCAAAATTCCTTAGAAAATCA
GAGGAAAGTTGGCCAAAAATGGAACTAATAGAATCGAGCGAAGTAAAGAA
TTAAAGAAACTAATTAAAGATAAAGAAGCGTGATCTGGAAAAGAGGCTAA
TAAGAAAATAGAAAGAATTCAGACAATGTTCAATGAGAATTTGATGCAAG
AAAAAATTGATTGCTTCAAAGTAACAACATTTTTATCAACGTTTCATAAT
GAATATAAGATTAAATGAGAACCGACGCATATGTGGAACGTTAACACTTG
ACGAAATAAAAAGAGTAAAAATAAAGATAATTCAAAATGAACAAGAAAAA
TATTTTAAAAGAGAAATAGATAAACTTAAAAATGAAGAACCAATTGATCG
AAAGAGTTACTCCTAAAATCATCTCCAATCATAGATTCTGAAGGCATTAT
TAGGAGTAATAGTCATATTTTTCACACTGAATGTTTGCTTGTGGAAACAA
AAAATCCAATAATTATGTCAGATAAGAGCTGGGTGACAAAATGGATAGTC
AAGAATGCACACGAAACATTGAATCACTACGCTGGAATGTAGCATGTCCT
AAACGAGTTGAATCAGAAATATTGGATTATTAAAACCAGAAGAGTGATAT
GAAAATGCGCTAATGATTGCTGTAGAAGAATATAACAAATTAAAACCCAG
GTCATGGCCCCGATGTCGGCCTTCTGTTTTTCAGAGCCATTAAGAGCATT
TGTGCATGTAACGGTGGATTTTGCTGGACATTTTGAAACAAAATCATTCT
GAGGACGAGTCCGCAATAAGAGGTACATGTGCTTGTTTGTTTGTATGAAG
AGTCGCGTAGTACATATAGAAACGGCTACGTATTGGACACATGCATTCTT
GCGAGCGTTTATGAGATTTACAAATAGACGAGGAATGCCTAAAATAGTTC
TACCAGACAATGGTACAAACTTTGTTGTAGCGGTACCTCATGTGGACAAT
TTTGTGATTGATAATTACCAAGTCTCAACGAAATTGAAAGAAAATGAATG
CTGTTGGATTTTTAATCCGCCTTCAGCTCCTCATTTCGGAGGAGTCTTTG
AATCATTAATGAAAACCGCAAAGTGCAATGAAGGCAATAATGACTATCTT
AGATGTGAATGACGAAGAATTGACAAACGTATTTGTACGTGCCGAAATGC
TATTGAATTCCAGACCTCTCTTGACACAGTGTATTGATGGTCGAGAAGAT
GTGATTATTACACCAAATCATCTATTGATGATTGCTGAATGGAGAAGTGA
AATGCATATAAACACTGCTTTTTTGGGAAAGAACGAATTAAGGTTAAGAT
GGAGACGAATTCAAGAATTAGCTCAAGCATTTTGGAAGCGTTGGCTAACA
AAACTGACAAGACAAAACTGAAATTTTCAAGAAGAGATAAAAAGCGGGTC
TGTTGTGTGGGTGATTGATACGAAAAACAATTATGGAAAATGGCCTATCG
GAAAAGTAATAGAAAAGTATCCTGGAAAAGATGGAAAAGTTCGAATAGTT
AAAATTCTTTGTGAAGGAAAATAAGTAATCAGGCCCATTGTGAAATTGAT
GACCATTTACGAAAATCATAGAAATTAAGAACAAAGTATACAATCCTAAA
GAGATAACATATATGATGAAGGGTTAACACTAAACTGTCAAAGGGGGGTT
AATTTTGAATATAAAATAAATATTGTAAAAGTGTATTTTTAAAGTTAACT
TTTTATATTGGGTTGTTTAAAATGCTCAGAAATAATAATAAAAATAATAA
TAGTAAT
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protein sequence of SMED30021915-orf-1

>SMED30021915-orf-1 ID=SMED30021915-orf-1|Name=SMED30021915-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp
MCLFVCMKSRVVHIETATYWTHAFLRAFMRFTNRRGMPKIVLPDNGTNFV
VAVPHVDNFVIDNYQVSTKLKENECCWIFNPPSAPHFGGVFESLMKTAKC
NEGNNDYLRCE*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR014760Serum_albumin_N
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: cellular component
TermDefinition
GO:0005615extracellular space
Vocabulary: biological process
TermDefinition
GO:0015074DNA integration
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22955RETROTRANSPOSONcoord: 1..99
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 3..99