Transcription initiation factor TFIID subunit 4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021853 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Human
Match: TAF4B (TATA-box binding protein associated factor 4b [Source:HGNC Symbol;Acc:HGNC:11538]) HSP 1 Score: 81.6481 bits (200), Expect = 1.770e-15 Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S+A + LLE+ A HR +K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + ++ AN+TAL AIG ++K Sbjct: 660 LQKRILDIGKKHDITELN--SDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKK 799
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Human
Match: TAF4B (TATA-box binding protein associated factor 4b [Source:HGNC Symbol;Acc:HGNC:11538]) HSP 1 Score: 81.6481 bits (200), Expect = 1.855e-15 Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S+A + LLE+ A HR +K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + ++ AN+TAL AIG ++K Sbjct: 665 LQKRILDIGKKHDITELN--SDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKK 804
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Human
Match: TAF4 (TATA-box binding protein associated factor 4 [Source:HGNC Symbol;Acc:HGNC:11537]) HSP 1 Score: 81.2629 bits (199), Expect = 3.061e-15 Identity = 47/152 (30.92%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 + +I EI K T ++ + ++YVS A + L+E+ + A + +KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ ++ P S Sbjct: 878 LQRRILEIGKKHGITELH--PDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCPGPGS 1027
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Human
Match: TAF4 (TATA-box binding protein associated factor 4 [Source:HGNC Symbol;Acc:HGNC:11537]) HSP 1 Score: 78.9518 bits (193), Expect = 7.206e-15 Identity = 47/149 (31.54%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 1035 KINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 +I EI K T ++ + ++YVS A + L+E+ + A + +KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ ++ P S Sbjct: 253 RILEIGKKHGITELH--PDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCPGPGS 399
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Celegans
Match: taf-4 (TAF (TBP-associated transcription factor) family [Source:UniProtKB/TrEMBL;Acc:O61707]) HSP 1 Score: 52.373 bits (124), Expect = 7.691e-7 Identity = 38/139 (27.34%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 993 SLPTNIINHHNYRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSR 1409 SL ++I+ N+I + + S + ++ +EAL +S+A+E+ L+ A A HR E + Y IDDV+ Q++FL++L+ + L + + K L + +K+++ KET+ K +E + E R Sbjct: 323 SLKSSILKPDEVLNRITKRMMS----SCSVEEEALVAISDAVESHLRELITLMAGVAEHRVESLRIPENYVAIDDVKRQLRFLEDLDRQEEELRESREKESLIRMSKNKNSG--------KETIEKAKEMQRQDAEAKR 449
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Match: Taf4 (gene:FBgn0010280 transcript:FBtr0333290) HSP 1 Score: 84.7297 bits (208), Expect = 1.115e-16 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 766 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 899
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Match: Taf4 (gene:FBgn0010280 transcript:FBtr0075451) HSP 1 Score: 84.3445 bits (207), Expect = 1.214e-16 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 655 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 788
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Match: Taf4 (gene:FBgn0010280 transcript:FBtr0075450) HSP 1 Score: 84.3445 bits (207), Expect = 1.214e-16 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 655 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 788
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Match: Taf4 (gene:FBgn0010280 transcript:FBtr0114589) HSP 1 Score: 84.7297 bits (208), Expect = 1.247e-16 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 892 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 1025
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Match: Taf4 (gene:FBgn0010280 transcript:FBtr0301911) HSP 1 Score: 84.3445 bits (207), Expect = 1.251e-16 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 725 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 858
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Match: si:dkey-219c3.2 (si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]) HSP 1 Score: 91.6633 bits (226), Expect = 8.702e-19 Identity = 43/124 (34.68%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 +S E + +S A ++ ++LE+ + A HR + KD+ +Y++ DVR+Q+KF ++LE ++ +DD+ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 783 VSMETVTLISHATQSRLRSMLEKVSAVAQHRADSCKDEDLYEQTSDVRTQLKFFEQLEKIEKQRKDDEERELLMKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 906
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Match: taf4a (TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-131127-579]) HSP 1 Score: 88.5817 bits (218), Expect = 7.751e-18 Identity = 48/150 (32.00%), Postives = 90/150 (60.00%), Query Frame = 3 Query: 1059 ESGTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKIIESEDPNSIPIGLKT 1499 E G ++D E +N VS A + LLE+ ++ A + +K+D Y++++DVR+Q+KF ++L+ ++ ++++ + L K AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG ++K P+S +G+ T Sbjct: 620 EIGQRFGVTDLGPEVVNIVSHATQQRLQNLLEKVSLIAQQKNMTYKEDSRYEQVEDVRAQLKFFEQLDQLEKQKKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQIRQRDANLTALAAIGPRKK----RKPDSPSLGIDT 765
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Match: taf4b (TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-070424-105]) HSP 1 Score: 61.2326 bits (147), Expect = 2.678e-9 Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 3 Query: 1065 GTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 G ++ +++ + L +S A + LLE+ A HRQ ++DD Y + +D RSQ+KFL++LE ++ +++ + L + A+SRS ++ EQ ++K+ ++MQ+ + E+ AN+ AL A+G ++K Sbjct: 647 GGSLGVTEVCPDVLELISLATQERLRDLLEKITAVAQHRQISYRDDWRYTQTNDTRSQLKFLEQLERLEKQKREEEERETLLRIARSRSNSEDPEQQRLKQRAKEMQQLELAQMEHRDANLAALAALGPRKK 778
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Match: taf4b (TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-070424-105]) HSP 1 Score: 60.4622 bits (145), Expect = 3.985e-9 Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 3 Query: 1065 GTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 G ++ +++ + L +S A + LLE+ A HRQ ++DD Y + +D RSQ+KFL++LE ++ +++ + L + A+SRS ++ EQ ++K+ ++MQ+ + E+ AN+ AL A+G ++K Sbjct: 385 GGSLGVTEVCPDVLELISLATQERLRDLLEKITAVAQHRQISYRDDWRYTQTNDTRSQLKFLEQLERLEKQKREEEERETLLRIARSRSNSEDPEQQRLKQRAKEMQQLELAQMEHRDANLAALAALGPRKK 516
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Match: taf4b (TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-070424-105]) HSP 1 Score: 60.077 bits (144), Expect = 4.950e-9 Identity = 41/132 (31.06%), Postives = 79/132 (59.85%), Query Frame = 3 Query: 1065 GTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 G ++ +++ + L +S A + LLE+ A HRQ ++DD Y + +D RSQ+KFL++LE ++ +++ + L + A+SRS ++ EQ ++K+ ++MQ+ + E+ AN+ AL A+G ++K Sbjct: 472 GGSLGVTEVCPDVLELISLATQERLRDLLEKITAVAQHRQISYRDDWRYTQTNDTRSQLKFLEQLERLEKQKREEEERETLLRIARSRSNSEDPEQQRLKQRAKEMQQLELAQMEHRDANLAALAALGPRKK 603
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Xenopus
Match: TAF4B (TATA-box binding protein associated factor 4b [Source:NCBI gene;Acc:100487219]) HSP 1 Score: 85.1149 bits (209), Expect = 1.532e-16 Identity = 42/124 (33.87%), Postives = 76/124 (61.29%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 ++ + +N VS A + L+E+ + A HR +K Y K DVR+Q+KFL++LE ++ +++ + L + AKSRS ++ EQL++K+ +++Q+ + +Y AN+TAL AIG ++K Sbjct: 705 LNSDVMNLVSHATQERLRGLIEKLTLAAQHRSTNYKQSDRYLKYSDVRAQLKFLEQLEHLEKQRRNEEEREMLLRAAKSRSNREDPEQLRLKQKAKELQQMELEQIQYREANLTALAAIGPRKK 828
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Xenopus
Match: cetn4 (centrin 4 [Source:Xenbase;Acc:XB-GENE-920656]) HSP 1 Score: 82.8037 bits (203), Expect = 7.719e-16 Identity = 49/149 (32.89%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 1035 KINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 +I EI K T I+ + ++YVS A + ++E+ + A + KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ +ES P S Sbjct: 844 RILEIGKKHGITEIH--QDVVSYVSHATQQRLQNIVEKISETAQQKNISHKDDDRYEQTSDVRTQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVESPGPGS 990
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Xenopus
Match: cetn4 (centrin 4 [Source:Xenbase;Acc:XB-GENE-920656]) HSP 1 Score: 82.8037 bits (203), Expect = 8.953e-16 Identity = 49/149 (32.89%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 1035 KINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 +I EI K T I+ + ++YVS A + ++E+ + A + KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ +ES P S Sbjct: 829 RILEIGKKHGITEIH--QDVVSYVSHATQQRLQNIVEKISETAQQKNISHKDDDRYEQTSDVRTQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVESPGPGS 975
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Xenopus
Match: cetn4 (centrin 4 [Source:Xenbase;Acc:XB-GENE-920656]) HSP 1 Score: 79.7221 bits (195), Expect = 7.868e-15 Identity = 45/139 (32.37%), Postives = 83/139 (59.71%), Query Frame = 3 Query: 1035 KINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 +I EI K T I+ + ++YVS A + ++E+ + A + KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 829 RILEIGKKHGITEIH--QDVVSYVSHATQQRLQNIVEKISETAQQKNISHKDDDRYEQTSDVRTQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 965
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Mouse
Match: Taf4b (TATA-box binding protein associated factor 4b [Source:MGI Symbol;Acc:MGI:2152345]) HSP 1 Score: 83.5741 bits (205), Expect = 3.193e-16 Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S A + LLE+ A HR ++K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + +Y AN+TAL AIG ++K Sbjct: 649 LQKRILDIGKKHDITELN--SDAVNLISHATQERLRGLLEKLTTIAQHRMTIYKGSENYILSTDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQYRDANLTALAAIGPRKK 788
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Mouse
Match: Taf4b (TATA-box binding protein associated factor 4b [Source:MGI Symbol;Acc:MGI:2152345]) HSP 1 Score: 83.5741 bits (205), Expect = 3.347e-16 Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S A + LLE+ A HR ++K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + +Y AN+TAL AIG ++K Sbjct: 654 LQKRILDIGKKHDITELN--SDAVNLISHATQERLRGLLEKLTTIAQHRMTIYKGSENYILSTDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQYRDANLTALAAIGPRKK 793
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Mouse
Match: Taf4 (TATA-box binding protein associated factor 4 [Source:MGI Symbol;Acc:MGI:2152346]) HSP 1 Score: 82.0333 bits (201), Expect = 1.137e-15 Identity = 47/152 (30.92%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 + +I EI K T ++ + ++YVS A + L+E+ + A + +KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ ++ P S Sbjct: 835 LQRRILEIGKKHGITELH--PDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCTGPGS 984
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Mouse
Match: Taf4 (TATA-box binding protein associated factor 4 [Source:MGI Symbol;Acc:MGI:2152346]) HSP 1 Score: 81.6481 bits (200), Expect = 1.255e-15 Identity = 47/152 (30.92%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 + +I EI K T ++ + ++YVS A + L+E+ + A + +KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ ++ P S Sbjct: 823 LQRRILEIGKKHGITELH--PDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCTGPGS 972
BLAST of Transcription initiation factor TFIID subunit 4 vs. UniProt/SwissProt
Match: sp|P47825|TAF4_DROME (Transcription initiation factor TFIID subunit 4 OS=Drosophila melanogaster OX=7227 GN=Taf4 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.254e-15 Identity = 48/135 (35.56%), Postives = 80/135 (59.26%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 I SE+G D A+ +S A + ++E+ AV A HR ++ K DP Y+ DVR Q+KFL+EL+ ++ ++ + L + AKSRS++++ EQ K+K ++MQ + AN+TAL+AIG ++K+ Sbjct: 725 ITSEAGLDEPSQDVAV-LISHACQERLKNIVEKLAVIAEHRIDVIKLDPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPEQAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKL 858
BLAST of Transcription initiation factor TFIID subunit 4 vs. UniProt/SwissProt
Match: sp|G5E8Z2|TAF4B_MOUSE (Transcription initiation factor TFIID subunit 4B OS=Mus musculus OX=10090 GN=Taf4b PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 2.253e-15 Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S A + LLE+ A HR ++K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + +Y AN+TAL AIG ++K Sbjct: 649 LQKRILDIGKKHDITELN--SDAVNLISHATQERLRGLLEKLTTIAQHRMTIYKGSENYILSTDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQYRDANLTALAAIGPRKK 788
BLAST of Transcription initiation factor TFIID subunit 4 vs. UniProt/SwissProt
Match: sp|Q92750|TAF4B_HUMAN (Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 8.499e-15 Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +I +I K T +N +A+N +S+A + LLE+ A HR +K Y D RSQ+KFL++L+ ++ +D + + L K AKSRS ++ EQL++K+ +++Q+ + ++ AN+TAL AIG ++K Sbjct: 660 LQKRILDIGKKHDITELN--SDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKK 799
BLAST of Transcription initiation factor TFIID subunit 4 vs. UniProt/SwissProt
Match: sp|O00268|TAF4_HUMAN (Transcription initiation factor TFIID subunit 4 OS=Homo sapiens OX=9606 GN=TAF4 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.470e-14 Identity = 47/152 (30.92%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 1026 YRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG-NKRKIIESEDPNS 1478 + +I EI K T ++ + ++YVS A + L+E+ + A + +KDD Y++ DVR+Q+KF ++L+ ++ +D++ + L + AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG K++ ++ P S Sbjct: 878 LQRRILEIGKKHGITELH--PDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCPGPGS 1027
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Match: A0A1S4MYX8 (Transcription initiation factor TFIID subunit,putative OS=Pediculus humanus subsp. corporis OX=121224 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.422e-20 Identity = 125/481 (25.99%), Postives = 213/481 (44.28%), Query Frame = 3 Query: 165 QNSITNKLC-KFFKNLLELEEKQGRYNES--VAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPEHVLDLNHQTTXXXXXXXXXXXXXXXXXXXXXXXGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANP-----NPQPVFS----SSQSVLSIPNANLRSIAPSSPIRQPYIQNTISTNQIRAV----AVSTSALANNTKSAPVI--------------------NSDELK-----------IETVTSMVEHSSPQKHQ----SHEPMSTNSVSLPTNIINHH-NYRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 Q T + C KF NLLEL ++ + E +IQ+ I+ ++ ++ +L+ + + P L+ L ++ LR+ +F + I+GI PPP+ V+ + + T+ + P N+ +T P++ + R V + QI Q I A +R P P P+ SSQ+ S P + I P++P R +N + ++ V V T + ANN++S VI +ELK I V +M + ++ Q S + + T S+ I H +NKI +I+ + S E + VS A + TL+E+ A A HR ++ K D Y+ + DV+ Q+KFL+EL+ +R +++ + L + AKSRSK ++ EQ+K+K ++MQ + AN+TAL+AIG ++K Sbjct: 399 QMDTTKEKCRKFLANLLELSSREPKAVERNVRTLIQELIDAKVEPEDFCDRLEKLLNASPQP-CLIGFLKKSLPLLRQSLFSREMTIEGIRPPPQQVVSTTASVAQVPQMQAQLRPQMVTQ---------TVRVVAPLNAAGQNISVTTPRMGTLQNRFVTPIRGQIPAQGKIIATSIRGQTPLATSTQPPPLHHTTPISSQTPSSPP---VHQIRPTTPARAAAPKNQTTKTPVKQVITKTTVQTKSNANNSRSINVIAKPSTPSVTNKSISKVISKGGYEELKFGATSFSGDDDINDVAAMGGVNLAEESQRILGSTQFVGTQIRSVKDEIFLHSIPLQNKIRQIVSNHG--LDEPSSEVASLVSHACQERLKTLIEKLACIAEHRIDVIKLDSRYEVVQDVKGQLKFLEELDRVERKRHEEQERELLLRAAKSRSKSEDPEQVKLKAKAKEMQRAEMEELRQREANLTALQAIGPRKK 864
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Match: E0VZS5 (Transcription initiation factor TFIID subunit, putative OS=Pediculus humanus subsp. corporis OX=121224 GN=Phum_PHUM537630 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.081e-19 Identity = 124/481 (25.78%), Postives = 211/481 (43.87%), Query Frame = 3 Query: 165 QNSITNKLC-KFFKNLLELEEKQGRYNES--VAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPEHVLDLNHQTTXXXXXXXXXXXXXXXXXXXXXXXGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANP-----NPQPVFS----SSQSVLSIPNANLRSIAPSSPIRQPYIQNTISTNQIRAV----AVSTSALANNTKSAPVI--------------------NSDELK-----------IETVTSMVEHSSPQKHQ----SHEPMSTNSVSLPTNIINHH-NYRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 Q T + C KF NLLEL ++ + E +IQ+ I+ ++ ++ +L+ + + P L+ L ++ LR+ +F + I+GI PPP+ V+ + + T+ + P N+ +T P++ + R QI Q I A +R P P P+ SSQ+ S P + I P++P R +N + ++ V V T + ANN++S VI +ELK I V +M + ++ Q S + + T S+ I H +NKI +I+ + S E + VS A + TL+E+ A A HR ++ K D Y+ + DV+ Q+KFL+EL+ +R +++ + L + AKSRSK ++ EQ+K+K ++MQ + AN+TAL+AIG ++K Sbjct: 399 QMDTTKEKCRKFLANLLELSSREPKAVERNVRTLIQELIDAKVEPEDFCDRLEKLLNASPQP-CLIGFLKKSLPLLRQSLFSREMTIEGIRPPPQQVVSTTASVAQVPQMQAQLRPQMVTQ---------TVRVVAPLNAAGQNISVTTPRMGTLQNR------GQIPAQGKIIATSIRGQTPLATSTQPPPLHHTTPISSQTPSSPP---VHQIRPTTPARAAAPKNQTTKTPVKQVITKTTVQTKSNANNSRSINVIAKPSTPSVTNKSISKVISKGGYEELKFGATSFSGDDDINDVAAMGGVNLAEESQRILGSTQFVGTQIRSVKDEIFLHSIPLQNKIRQIVSNHG--LDEPSSEVASLVSHACQERLKTLIEKLACIAEHRIDVIKLDSRYEVVQDVKGQLKFLEELDRVERKRHEEQERELLLRAAKSRSKSEDPEQVKLKAKAKEMQRAEMEELRQREANLTALQAIGPRKK 858
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Match: A0A2G8K239 (Putative transcription initiation factor TFIID subunit 4-like isoform X2 OS=Stichopus japonicus OX=307972 GN=BSL78_21067 PE=4 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.544e-18 Identity = 48/123 (39.02%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 1083 SDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 S EA++ +S A+E T++E+ +V A HR E++++DP Y+ + DVRSQ+KF ++L+ +R D++ + L + AKSRSK ++ EQL++K ++MQ + AN+TAL AIG ++K Sbjct: 667 SREAVDLISSAVEERLKTMVEKLSVIAQHRLEIYREDPKYEPVTDVRSQLKFFEQLDAMERKRRDEQEREMLLRAAKSRSKQEDPEQLRLKRKAKEMQLMEAEQIRQQEANLTALAAIGPRKK 789
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Match: W5M1Q0 (Si:dkey-219c3.2 OS=Lepisosteus oculatus OX=7918 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.792e-18 Identity = 47/124 (37.90%), Postives = 80/124 (64.52%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + EA+N++S A + T+LE+ + A HR E +KDD Y++ DVRSQ+KF ++LE ++ +D++ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 912 VPAEAVNFISHATQERLRTVLEKVTIIAQHRMETYKDDEWYEQATDVRSQLKFFEQLERIEKQRKDEEEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 1035
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Match: W5M1R8 (Si:dkey-219c3.2 OS=Lepisosteus oculatus OX=7918 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 4.602e-18 Identity = 47/124 (37.90%), Postives = 80/124 (64.52%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + EA+N++S A + T+LE+ + A HR E +KDD Y++ DVRSQ+KF ++LE ++ +D++ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 847 VPAEAVNFISHATQERLRTVLEKVTIIAQHRMETYKDDEWYEQATDVRSQLKFFEQLERIEKQRKDEEEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 970
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Match: ENSAMXT00000031575.1 (pep primary_assembly:Astyanax_mexicanus-2.0:18:35619383:35725638:-1 gene:ENSAMXG00000029195.1 transcript:ENSAMXT00000031575.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-18 Identity = 54/155 (34.84%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 996 LPTNIINHHNYRNKINEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG--NKRKI 1454 LPT +++ +I E K T + + EA+N++S A ++ T+LE+ A HR + KD+ Y++ DVRSQ+KF ++LE ++ +D++ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG KRK+ Sbjct: 55 LPTGLLHR-----RILETAKKYGVTEVPL--EAVNFISHATQSRLRTVLEKVTSIAQHRMDSNKDEEWYEQSSDVRSQLKFFEQLERLEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKV 202
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Match: si:dkey-219c3.2 (si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]) HSP 1 Score: 86.2705 bits (212), Expect = 4.614e-17 Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 I + ++ VS A E ++LE A HR + KD+ ++ DVR+Q+KF ++LE ++ +DD+ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 851 IGGDVVSLVSHAAEVRLRSMLENVTALAQHRADSCKDEETLEQTSDVRTQLKFFEQLERLEKQRKDDEEREILLKVAKSRSRQEDPEQARLKQKAKEMQQQELAEMRQRDANLTALAAIGPRKK 974
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Match: si:dkey-219c3.2 (si:dkey-219c3.2 [Source:ZFIN;Acc:ZDB-GENE-090313-238]) HSP 1 Score: 85.5001 bits (210), Expect = 5.955e-17 Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 I + ++ VS A E ++LE A HR + KD+ ++ DVR+Q+KF ++LE ++ +DD+ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 757 IGGDVVSLVSHAAEVRLRSMLENVTALAQHRADSCKDEETLEQTSDVRTQLKFFEQLERLEKQRKDDEEREILLKVAKSRSRQEDPEQARLKQKAKEMQQQELAEMRQRDANLTALAAIGPRKK 880
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Match: TAF4 (TATA-box binding protein associated factor 4 [Source:HGNC Symbol;Acc:HGNC:11537]) HSP 1 Score: 78.1814 bits (191), Expect = 1.160e-14 Identity = 39/124 (31.45%), Postives = 76/124 (61.29%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + + ++ VS A + LLE+ A R +K+D ++++ DVR+Q+KF ++L+ ++ ++++ + L K AKSRS+ ++ EQL++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 644 LGSDVVSIVSHAAQQRLQNLLEKVTQVAQQRNVPYKEDERHEQVSDVRAQLKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 767
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Match: taf4a (TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-131127-579]) HSP 1 Score: 69.3218 bits (168), Expect = 7.560e-12 Identity = 38/126 (30.16%), Postives = 73/126 (57.94%), Query Frame = 3 Query: 1077 NISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKI 1454 +++ E +N VS A + LLE+ +V A + +K+D Y+++ DVR+Q+KF ++L+ ++ ++++ + L K AKSRS+ ++ EQL++K+ ++ S AN TA + G R+ Sbjct: 652 DLAPEVVNLVSHAAQQRLQNLLEKVSVIAQQKNMTYKEDGRYEQVTDVRAQLKFFEQLDQMEKQKKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKE--------GSGSSANATAGLSGGVSRQF 769
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Nematostella
Match: EDO36684 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHT6]) HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-13 Identity = 40/144 (27.78%), Postives = 81/144 (56.25%), Query Frame = 3 Query: 1038 INEIIKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG--NKRKIIES 1463 + E+ K G NI + +S A + +LE+ + + +R E ++DDP Y+ + ++Q++ +++++ +R + + + L + AKSRS+ ++ EQ ++KE +++Q+ ++ AN TAL AIG KRK+ E+ Sbjct: 651 VGEVKKQGLG---NIHQDVCGLISHACQERLRNILEKLSTISLNRPESYRDDPRYEGGLETKAQLRVFEQIDEVERKKRELREREVLMRAAKSRSRQEDPEQARLKEKAKQLQQEEEEIIRKREANNTALAAIGPRKKRKLDEA 791
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Match: si:ch211-79l17.1 (KIAA0355 ortholog [Source:NCBI gene;Acc:100170629]) HSP 1 Score: 91.6633 bits (226), Expect = 8.560e-19 Identity = 50/149 (33.56%), Postives = 90/149 (60.40%), Query Frame = 3 Query: 1059 ESGTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG--NKRKIIESEDPNSIPIG 1490 E+ ++D EA+ ++S A ++ T++E+ ++ A HR + KDD Y++ DVRSQ++F ++LE ++ +D++ + L K AKSRS+ ++ EQ ++K+ ++MQ+ + AN+TAL AIG KRK+ + P + P G Sbjct: 816 ETAKKFGVTDVPVEAVTFISHATQSRLRTMVEKISIIAQHRLDSCKDDEYYEQSTDVRSQLRFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKV---DSPRAQPSG 961
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Match: ENSORLT00000041494.1 (transcription initiation factor TFIID subunit 4 [Source:NCBI gene;Acc:101167450]) HSP 1 Score: 89.3521 bits (220), Expect = 3.567e-18 Identity = 60/215 (27.91%), Postives = 104/215 (48.37%), Query Frame = 3 Query: 1080 ISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIG--NKRKIIESEDPNSIPIGLKTARXXXXXXXXXXXXXXXXXSQIYINPNFVAGKSQRPSTVARFRNKRIILKDFQLVLDQDVKLKR-FKTYKKIF 1715 + + +N VS A + +LLE+ +V A HR + KD+ +Y++ DVR+Q++F ++LE ++ +D++ + L K AKSR++ ++ EQ ++K+ ++MQ+ + AN+TAL AIG KRK+ N + ++ + S P R R R+ L+DF L L+QD R YK + Sbjct: 717 VPADVVNVVSHATQFRLRSLLEKVSVVAQHRADAVKDEDLYEQTSDVRAQLRFFEQLERIEKQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSVGGAN---------------------------TGSEVSSGLGSLGSPSPRQQLRQRITRVNLRDFILCLEQDRSTARSMALYKALL 904
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Match: ENSORLT00000000324.2 (transcription initiation factor TFIID subunit 4 [Source:NCBI gene;Acc:101167450]) HSP 1 Score: 80.8777 bits (198), Expect = 1.581e-16 Identity = 42/121 (34.71%), Postives = 78/121 (64.46%), Query Frame = 3 Query: 1089 EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 + +N VS A + +LLE+ +V A HR + KD+ +Y++ DVR+Q++F ++LE ++ +D++ + L K AKSR++ ++ EQ ++K+ ++MQ+ + AN+TAL AIG ++K Sbjct: 84 DVVNVVSHATQFRLRSLLEKVSVVAQHRADAVKDEDLYEQTSDVRAQLRFFEQLERIEKQRKDEQEREMLLKAAKSRARQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK 204
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Match: TAF4 (TATA-box binding protein associated factor 4 [Source:NCBI gene;Acc:101174832]) HSP 1 Score: 80.1073 bits (196), Expect = 3.492e-15 Identity = 42/137 (30.66%), Postives = 80/137 (58.39%), Query Frame = 3 Query: 1050 IKSESGTTINISD---EALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRK 1451 I E G +S+ + ++Y+S A + LLE+ + A H+ K+D +++ DVR Q+KF ++L+ ++ ++++ + L K AKSRS+ ++ EQL++K+ ++MQ+ + AN+ AL AIG ++K Sbjct: 752 IALEIGKKFGVSELGTDVISYISHATQQRLQNLLEKVSQVAHHKNVTLKEDERCEQVSDVRGQLKFFEQLDQLEKQRKEEQEREILLKAAKSRSRQEDPEQLRLKQKAKEMQQLELAQIRQREANLAALAAIGPRKK 888
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Match: taf4a (transcription initiation factor TFIID subunit 4 [Source:NCBI gene;Acc:101155764]) HSP 1 Score: 75.485 bits (184), Expect = 8.718e-14 Identity = 41/143 (28.67%), Postives = 82/143 (57.34%), Query Frame = 3 Query: 1050 IKSESGTTINISDEALNYVSEAMENFSITLLEQAAVFACHRQELFKDDPIYKKIDDVRSQMKFLQELEDYQRNLEDDKIKAELFKQAKSRSKMDNQEQLKIKETVRKMQEHDKNWDEYSRANMTALKAIGNKRKIIESEDPNS 1478 I G T ++ + + ++S A + LLE+ + A + K+ Y++ DVR+Q+KF ++L+ ++ ++++ + L K AKSR++ ++ EQL++K+ ++MQ+ + AN+TAL AIG ++K + P+S Sbjct: 617 ISKRHGVT-DLGTDVVTFISHATQQRLQNLLEKVSFVAQQKNINLKESENYEQSSDVRAQLKFFEQLDQLEKQRKEEQEREILLKAAKSRARQEDPEQLRLKQKAKEMQQQELAQMRQREANLTALAAIGPRKKRKNLDSPSS 758
BLAST of Transcription initiation factor TFIID subunit 4 vs. Planmine SMEST
Match: SMESG000031801.1 (SMESG000031801.1) HSP 1 Score: 414.461 bits (1064), Expect = 4.746e-143 Identity = 231/232 (99.57%), Postives = 232/232 (100.00%), Query Frame = 3 Query: 27 MNSINRPDLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPEHVLDLNHQTTXXXXXXXXXXXXXXXXXXXXXXXGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF 722 MNSINRPDLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPE+VLDLNHQTTIISSSNNMNININNSSNNIINSNGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF Sbjct: 1 MNSINRPDLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPENVLDLNHQTTIISSSNNMNININNSSNNIINSNGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF 232
BLAST of Transcription initiation factor TFIID subunit 4 vs. Planmine SMEST
Match: SMESG000031801.1 (SMESG000031801.1) HSP 1 Score: 400.979 bits (1029), Expect = 1.446e-137 Identity = 230/248 (92.74%), Postives = 231/248 (93.15%), Query Frame = 3 Query: 27 MNSINR----------------PDLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPEHVLDLNHQTTXXXXXXXXXXXXXXXXXXXXXXXGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF 722 MNSINR DLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPE+VLDLNHQTTIISSSNNMNININNSSNNIINSNGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF Sbjct: 1 MNSINRRKYCIFDDLFCIYIFSADLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSITNKLCKFFKNLLELEEKQGRYNESVAVIQKYINKEINIDELGVQLKGNASKATLPDSLMSSLNSNIDDLRREMFYGRVRIDGINPPPENVLDLNHQTTIISSSNNMNININNSSNNIINSNGGTINLRLPTNSLIPQRPITYPQVNNIITRPVVTQQSQILRQANIQARQLRPANPNPQPVF 248 The following BLAST results are available for this feature:
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of Transcription initiation factor TFIID subunit 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Transcription initiation factor TFIID subunit 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Transcription initiation factor TFIID subunit 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Transcription initiation factor TFIID subunit 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021853 ID=SMED30021853|Name=Transcription initiation factor TFIID subunit 4|organism=Schmidtea mediterranea sexual|type=transcript|length=1791bpback to top protein sequence of SMED30021853-orf-1 >SMED30021853-orf-1 ID=SMED30021853-orf-1|Name=SMED30021853-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=569bp MNSINRPDLNARIINTTGARPRPQNARLVCIPSNSTQVMQTPQASNQNSIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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