Pmp-10

Overview
NamePmp-10
Smed IDSMED30021793
Length (bp)1285
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Pmp-10 (SMED30021793) t-SNE clustered cells

Violin plots show distribution of expression levels for Pmp-10 (SMED30021793) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Pmp-10 (SMED30021793) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Pmp-10 (SMED30021793) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30021793

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30021793h1SMcG0013410 Contig5219GPL15192PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021793h1SMcG0013411 Contig5219GPL15192PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021793h1SMcG0013411 Contig28221newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021793h1SMcG0013411 Contig28221uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30021793h1SMcG0013410 SMED30021793smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30021793h1SMcG0013410 SMED30021793smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30021793h1SMcG0013412 SMED30028287smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30021793h1SMcG0013412 SMED30028287smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30021793h1SMcG0013411 SMED30021793smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30021793h1SMcG0013411 SMED30021793smed_20140614PMID:26457503
Tu et al., 2015
whole organism asexual adult colorimetric in situ hybridization evidence
early male germ cellSMED30021793h1SMcG0013411 Contig5219_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism asexual adult cDNA to DNA expression microarray evidence
early male germ cellSMED30021793h1SMcG0013410 Contig5219_SE3GPL10652PMID:20844018
Wang et al., 2010
whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Pmp-10 vs. TrEMBL
Match: A0A0A1CQX9 (Pmp-10 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=pmp-10 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.085e-67
Identity = 118/196 (60.20%), Postives = 146/196 (74.49%), Query Frame = 1
Query:   70 CKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGXXXXXXXXXXXXSVKNMAEEENFFDEINIKKYVKLL 657
            C+IG+L+VK AK+LI+N+ QR QCN LIPE  SCD AY+T+D YC+ KA+ ID  C+  F KL E CN AEN IK  C  K GY+TA CGR F+RLD VCRI S+T SR CTK YRKMDN+C KKY KI +KCKRI+ RYKDFCE+ ++ NYWNE YK GEFKI+ K ++IE +KN+A  E FF+  N  +Y+K L
Sbjct:    3 CEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNVENKIQYLKSL 198          
BLAST of Pmp-10 vs. TrEMBL
Match: I1ZI86 (Uncharacterized protein OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.439e-7
Identity = 40/153 (26.14%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   85 LAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYK 543
            L    AK  IL +   ++C+ LIP    CD+  +     C   +  + K+CD +F  L + CNT E+++  +C    G     C      LD +C          C + Y K++ +C   + +I  +C  I + Y + CE  + P  W    K
Sbjct:   19 LQSTSAKVPILVRYGEQECDELIPLKLKCDEFRKHAGLVCRGASDVLAKKCDTAFHHLTDGCNTKESNLLNKC----GNPKPVCENRLHFLDIICNKACDAIKDFCRRRYIKINRKCEFIFKRIDERCLGIDEHYHETCELSLDPYNWRRVEK 167          
BLAST of Pmp-10 vs. Planmine SMEST
Match: SMESG000068743.1 (SMESG000068743.1)

HSP 1 Score: 611.298 bits (1575), Expect = 0.000e+0
Identity = 368/376 (97.87%), Postives = 370/376 (98.40%), Query Frame = 1
Query:   10 MTRFHYLILLFYIVWIQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGXXXXXXXXXXXXSVKNMAEEENFFDEINIKKYVKLLNXXXXXXXXTVKNTIKPTVRIVTTAKPHXXXXXXXXXXXXXXLKKPQKKTQPIDSIDNLHSENKKIEPXXXXXXXXXXXXDFNMEDVEELLEKAQPPSATKKPSLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLDNFQIENALADILEHAAPE 1137
            MTRFHYLILLF IVWIQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGEFKINEKIIKIESVKNMAEEENFFDEINIKKYVKLLNEKKEESKKTVKNTIKPTVRIVTTAKPHSTKKSAKTTIKSN LKKPQKKTQ IDSIDNLHSENKKIEPNNLN+AKKSLLNDFNMEDVEELLEKAQPPSATKKPS HKRSTISKKKTTQIKKA TKPP LSKPKKPSKKSFLDNFQIENALADILE+AAPE
Sbjct:    1 MTRFHYLILLFCIVWIQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGEFKINEKIIKIESVKNMAEEENFFDEINIKKYVKLLNEKKEESKKTVKNTIKPTVRIVTTAKPHSTKKSAKTTIKSNALKKPQKKTQRIDSIDNLHSENKKIEPNNLNSAKKSLLNDFNMEDVEELLEKAQPPSATKKPSFHKRSTISKKKTTQIKKAATKPPTLSKPKKPSKKSFLDNFQIENALADILENAAPE 376          
BLAST of Pmp-10 vs. Planmine SMEST
Match: SMESG000068428.1 (SMESG000068428.1)

HSP 1 Score: 241.891 bits (616), Expect = 1.427e-70
Identity = 122/212 (57.55%), Postives = 156/212 (73.58%), Query Frame = 1
Query:   25 YLILLFYIVW-IQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGXXXXXXXXXXXXSVKNMAEEENFFDEINIKKYVKLL 657
            +L+L  +I + I ++ C+IG+L+VK AK+LI+N+ QR QCN LIPE  SCD AY+T+D YC+ KA+ ID  C+  F KL E CN AEN IK  C  K GY+TA CGR F+RLD VCRI S+T SR CTK YRKMDN+C KKY KI +KCKRI+ RYKDFCE+ ++ NYWNE YK GEFKI+ K ++IE +KN+A  E FF+  N  +Y+K L
Sbjct:    5 FLLLFIFIFYEIHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNVENKIQYLKSL 216          
BLAST of Pmp-10 vs. Planmine SMEST
Match: SMESG000043853.1 (SMESG000043853.1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.747e-23
Identity = 49/165 (29.70%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   34 LLFYIVWIQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYW 528
             L +I+     + +IG+L++ +++SLI  K+  + C  L+P   +CD+A   VD YC  +     + C+  F+K V  CN  E  I + C +  G++  +CG  F+ L  VC++ S  QS  C +L ++ +  C    +KI   C+ ++  Y +FC+  +S  Y+
Sbjct:    9 FLLFILSFLSINAEIGDLSIHESQSLINFKSTHQTCGNLVPITKTCDKALSIVDDYCYSQLHQTIRFCEHQFQKGVYYCNKTEKKITKTCIRNIGFLNEKCGSFFDSLRIVCQLESDYQSVVCDRLLKQNEKNCNNFKNKILRNCRHVYQHYLNFCDFSISDTYY 173          
BLAST of Pmp-10 vs. Planmine SMEST
Match: SMESG000053861.1 (SMESG000053861.1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.524e-20
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  112 ILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYW 528
            I  +    +C  LIP A+ CD+AY T D YCD  AS +DK+CDI+F+KL   CN  E  I + C KK       C  +   LD  C       S +C+  Y  M ++C    +++  +C  I+ +Y++ CE ++ P  W
Sbjct:   22 IQRRFGESECEDLIPFAEHCDRAYLTADNYCDRYASHLDKQCDIAFRKLTNGCNKHEGYILQTCGKKG----PRCKVMINFLDITCNQACVAISDYCSDEYDYMTDKCEFINNRLEKRCNGIYQQYEETCEKNLDPYNW 156          
BLAST of Pmp-10 vs. Planmine SMEST
Match: SMESG000027979.1 (SMESG000027979.1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.347e-10
Identity = 40/153 (26.14%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   85 LAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYK 543
            L    AK  IL +   ++C+ LIP    CD+  +     C   +  + K+CD +F  L + CNT E+++  +C    G     C      LD +C          C + Y K++ +C   + +I  +C  I + Y + CE  + P  W    K
Sbjct:   19 LQSTSAKVPILVRYGEQECDELIPLKLKCDEFRKHAGLVCRGASDVLAKKCDTAFHHLTDGCNTKESNLLNKC----GNPKPVCENRLHFLDIICNKACDAIKDFCRRRYIKINRKCEFIFKRIDERCLGIDEHYHETCELSLDPYNWRRVEK 167          
The following BLAST results are available for this feature:
BLAST of Pmp-10 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0A1CQX92.085e-6760.20Pmp-10 (Fragment) OS=Schmidtea mediterranea OX=793... [more]
I1ZI868.439e-726.14Uncharacterized protein OS=Schmidtea mediterranea ... [more]
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BLAST of Pmp-10 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Pmp-10 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000068743.10.000e+097.87SMESG000068743.1[more]
SMESG000068428.11.427e-7057.55SMESG000068428.1[more]
SMESG000043853.13.747e-2329.70SMESG000043853.1[more]
SMESG000053861.11.524e-2034.53SMESG000053861.1[more]
SMESG000027979.12.347e-1026.14SMESG000027979.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021793 ID=SMED30021793|Name=Pmp-10|organism=Schmidtea mediterranea sexual|type=transcript|length=1285bp
TTGAAAATTATGACGAGGTTTCACTATTTAATTCTGCTATTTTATATTGT
TTGGATTCAAGAGAGCGATTGTAAAATCGGTGAATTGGCTGTCAAAAAGG
CTAAATCTCTCATTCTGAACAAAGCTCAACGAGAACAATGTAATCTTCTA
ATACCGGAAGCTGATAGTTGCGACCAAGCATACCAGACCGTTGACAAATA
CTGTGACGAAAAGGCTTCGAGTATCGACAAAGAATGCGATATAAGCTTCA
AGAAGCTAGTCGAAAAATGCAATACCGCAGAAAATAGCATTAAAGAACGA
TGTCAAAAGAAAAACGGTTATGTAACGGCAGAATGCGGTCGGCTCTTCGA
AAGGTTGGATAATGTCTGTCGTATCGTTTCGAGTACTCAATCAAGACATT
GTACCAAACTATATAGGAAGATGGATAATGAATGTTATAAAAAATATTCC
AAAATCACTTTAAAATGCAAAAGAATTTTCGATAGATATAAAGATTTCTG
TGAATCAGACATGTCACCAAATTATTGGAATGAAGCTTACAAAGATGGGG
AATTCAAAATCAATGAAAAAATTATAAAAATCGAAAGCGTTAAAAACATG
GCCGAAGAAGAAAACTTTTTTGACGAAATTAACATTAAAAAGTATGTAAA
GTTATTAAACGAAAAAAAAGAGGAATCGAAAAAAACTGTAAAAAATACTA
TCAAACCAACAGTCAGAATAGTAACAACTGCCAAACCCCATTCTACGAAA
AAATCAGCAAAGACAACTATAAAATCTAATACTCTAAAGAAGCCACAGAA
AAAGACTCAGCCAATTGATTCTATTGATAACTTACACTCAGAAAATAAAA
AGATAGAACCAAACAATTTGAATAACGCAAAAAAAAGTCTACTCAATGAC
TTTAACATGGAAGATGTTGAAGAACTGCTAGAGAAAGCACAGCCTCCTTC
AGCAACAAAAAAGCCTTCGCTCCATAAACGTTCGACAATATCCAAAAAGA
AAACAACACAAATTAAAAAAGCGACAACTAAACCACCAAAACTGTCAAAG
CCTAAGAAACCGTCAAAAAAATCATTTTTAGATAATTTTCAGATTGAAAA
TGCACTAGCCGATATACTTGAACACGCTGCACCAGAACTTAAAGCATTGA
AAAATAAAACCACTCTGAAAGTTTTGGCGAAAAAGCTGGCAACTATTGCA
CCAAAGAAATCAAAGACCAAAACAAAACATACGACACAAAAATCAAAAGC
AGCTCAAAAAGCAGCTCCACAAACGAAACCTAAAA
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protein sequence of SMED30021793-orf-1

>SMED30021793-orf-1 ID=SMED30021793-orf-1|Name=SMED30021793-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=428bp
LKIMTRFHYLILLFYIVWIQESDCKIGELAVKKAKSLILNKAQREQCNLL
IPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKER
CQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYS
KITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGEFKINEKIIKIESVKNM
AEEENFFDEINIKKYVKLLNEKKEESKKTVKNTIKPTVRIVTTAKPHSTK
KSAKTTIKSNTLKKPQKKTQPIDSIDNLHSENKKIEPNNLNNAKKSLLND
FNMEDVEELLEKAQPPSATKKPSLHKRSTISKKKTTQIKKATTKPPKLSK
PKKPSKKSFLDNFQIENALADILEHAAPELKALKNKTTLKVLAKKLATIA
PKKSKTKTKHTTQKSKAAQKAAPQTKPK
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000035Category 3 cell
PLANA:0002030early male germ cell
PLANA:0002032epidermal cell
PLANA:0002142parenchyma
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 325..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 394..428
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 311..356
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..291
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.72