SMED30021753
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021753 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Alignments
SMED30021753 aligns in the following genomic locations:
Homology
BLAST of SMED30021753 vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 53.5286 bits (127), Expect = 6.671e-7 Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCI-ESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECP 549 EC IC L +A CG +CK CI +S D G++ C + + + +F D+ + +L+ +KCP + C H+ ++ L+ H CE ++M+CP Sbjct: 69 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--------CPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 163
BLAST of SMED30021753 vs. Ensembl Human
Match: TRAF6 (TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]) HSP 1 Score: 53.5286 bits (127), Expect = 6.671e-7 Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCI-ESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECP 549 EC IC L +A CG +CK CI +S D G++ C + + + +F D+ + +L+ +KCP + C H+ ++ L+ H CE ++M+CP Sbjct: 69 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--------CPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 163
BLAST of SMED30021753 vs. Ensembl Fly
Match: Traf6 (gene:FBgn0265464 transcript:FBtr0071188) HSP 1 Score: 59.6918 bits (143), Expect = 3.132e-9 Identity = 50/219 (22.83%), Postives = 86/219 (39.27%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVC--------EKSMMECPFNEIGCDF-KSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEK-STLDSDLNGIVTENS------------CNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQ 834 EC IC +L + + CG +C+ C+ +WM NQ CP + + LS ++F D+ + + + CP S S ++LH + E +CPF +I CDF N L EHL ++ H + ++ + +G EN N + I Q E T++ +T LE+++ ++ Sbjct: 103 ECAICIDWLNEPVLTSCGHRFCRSCLTAWMQKNNQCCP------MDNKRLSAEHDIFPDNYTRREIEQLKRDCPNSSLGCSVVASPIELHRHLPSCPYRRQQEPQEEKCPFAKIKCDFVGRPETNQLEEHLKADMPHHMQLMLQAFQQTAIATWQPHKPSTSGAAVENGHGQQQLPPPPQYANGVDEQIVQTMYQRIVVLEQRTREQETRLENMQKQLR 315
BLAST of SMED30021753 vs. UniProt/SwissProt
Match: sp|Q9Y4K3|TRAF6_HUMAN (TNF receptor-associated factor 6 OS=Homo sapiens OX=9606 GN=TRAF6 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 3.204e-6 Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCI-ESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECP 549 EC IC L +A CG +CK CI +S D G++ C + + + +F D+ + +L+ +KCP + C H+ ++ L+ H CE ++M+CP Sbjct: 69 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--------CPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCP 163
BLAST of SMED30021753 vs. UniProt/SwissProt
Match: sp|Q3ZCC3|TRAF6_BOVIN (TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 3.668e-6 Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCI-ESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECP 549 EC IC L +A CG +CK CI +S D G++ C + + + +F D+ + +L+ +KCP + C H+ ++ L+ H CE ++M CP Sbjct: 70 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK--------CPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEEHQAHCEFALMSCP 164
BLAST of SMED30021753 vs. TrEMBL
Match: I1ZID8 (TNF receptor associated factor-2 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.887e-17 Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 1 Query: 184 IWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTE 714 I ++L + ++ + +C +C L++A CGC +C +CI ++ GN +CPG + C EE+L+I N+ D+ + ++ +KCP ++C C++ ++ H +C CPF +GC+ + L HL N HSK I + S + +D G+ T+ Sbjct: 6 INRLLITYNFEVEGGVPDNLKCDLCKNLLVNACQSRCGCRFCSKCIMEYVSRGNLYCPGGTSEC-KEENLTICSNIHTDYRVNRKIAKMRVKCPEETCKVYCELVDIEEHLRLCTMKSQNCPFFVLGCNQPKMVIQDLTNHLQNGTFQHSKLIIDII-------SNMRNDFFGLTTK 174
BLAST of SMED30021753 vs. TrEMBL
Match: T1E101 (TRAF-6 OS=Dendrocoelum lacteum OX=27895 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 5.171e-14 Identity = 44/165 (26.67%), Postives = 89/165 (53.94%), Query Frame = 1 Query: 181 NIWKILGEHKLD-INSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSE 672 N+ ++L ++ + ++ ++ C +C + + DA CGC+YC CI ++ + +CPG C E+ L++ +VF++ R+ +KCP CN+ ++ +L H + C +ECP IGC+ + + K+ + +HL ++V H++ + + + KSE Sbjct: 8 NVQELLSKYNVKRVDESVNNDLLCILCNKLMRDACESACGCHYCYTCIRIYLSQNHNYCPGDKTEC-KEDYLNLEGDVFRNIRLSTRISRIVVKCPNIRCNYTSELLRLKEHLDKCTPESVECPCVTIGCEEEPLLKDEMAKHLTDQVLRHTQLIMSFCNELKSE 171
BLAST of SMED30021753 vs. TrEMBL
Match: A0A182MKP3 (Uncharacterized protein OS=Anopheles culicifacies OX=139723 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.614e-9 Identity = 43/173 (24.86%), Postives = 77/173 (44.51%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCP--LDSCNHRCKISQLDLHFEVCEKSM----MECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSI 744 EC IC +L + + CG +C++CI W++ N CP + E L I ++F D+ + + + CP + C + +++D H C +M CPF I C F + ++ L H+ +E + H + ++ + D V E S ND++ S+ Sbjct: 32 ECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP------LDNEPLDIKSDIFPDNCTRREISQIKKPCPNSMRGCVDQFSPTEIDSHLRQCPFAMSRQSQPCPFARIKCKFIATDEAALNAHIASECQQHLQLLLETYTGSSDRYKFWDPPAKNSVPEMSTNDLVRSM 198
BLAST of SMED30021753 vs. TrEMBL
Match: A0A182W055 (Uncharacterized protein OS=Anopheles minimus OX=112268 PE=4 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.402e-8 Identity = 43/173 (24.86%), Postives = 76/173 (43.93%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCP--LDSCNHRCKISQLDLHFEVCEKSM----MECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSI 744 EC IC +L + + CG +C++CI W++ N CP + E L I ++F D+ + + + CP + C + + +D H C +M CPF I C F + ++ L H+ +E + H + ++ + D V E S ND++ S+ Sbjct: 32 ECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP------LDNEPLDIKCDIFPDNCTRREISQIKKPCPNSMRGCVDQLSPTDIDTHLRQCPFAMSRQSQPCPFARIKCKFIATDEAALSAHIASECQQHLQLLLETYTGSSDRYKFWDPPAKNSVPEMSTNDLVRSM 198
BLAST of SMED30021753 vs. TrEMBL
Match: A0A182PKL6 (Uncharacterized protein OS=Anopheles epiroticus OX=199890 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 3.930e-8 Identity = 41/173 (23.70%), Postives = 78/173 (45.09%), Query Frame = 1 Query: 244 ECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCP--LDSCNHRCKISQLDLHFEVCEKSM----MECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSI 744 EC IC +L + + CG +C++CI W++ N CP + E L I ++F D+ + + + CP + C + +++D H C +M CPF + C F + +++ L H+ +E + H + ++ + D V E S N+++ S+ Sbjct: 32 ECPICYCWLNEPILTKCGHRFCRKCITDWLNEKNSNCP------LDNEPLDIKCDIFPDNCTRREISQIKKPCPNSMRGCVDQLSPTEIDTHLRQCPFAMSRQSQPCPFARVQCKFVAPDEDALNAHIASECQQHLQLLLETYTGSNDRYKFWDPPAKNSVPEMSTNELVRSM 198
BLAST of SMED30021753 vs. Ensembl Nematostella
Match: EDO48394 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJK8]) HSP 1 Score: 51.6026 bits (122), Expect = 5.081e-7 Identity = 31/111 (27.93%), Postives = 52/111 (46.85%), Query Frame = 1 Query: 247 CTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGR-VNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFK 576 C IC + + + CG +YCK CIE W C G+ V +C + +F D +D +L+ E+KC + C + ++ Q H ++C ++C GC+ K Sbjct: 30 CAICHMVVNEPVLTSCGHSYCKYCIEKW-------CNGKEVVTCPVDNEQLKPSQIFPDKKTDRIVLSLEVKCTNNPCRWKGELRQKQKHLKICSHKAVKCILE--GCNVK 131
BLAST of SMED30021753 vs. Ensembl Medaka
Match: traf6 (TNF receptor associated factor 6 [Source:NCBI gene;Acc:101161132]) HSP 1 Score: 49.6766 bits (117), Expect = 5.403e-6 Identity = 34/133 (25.56%), Postives = 56/133 (42.11%), Query Frame = 1 Query: 181 NIWKILGEHKLDINSQISGFS-----------ECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMEC 546 N +G L + + G+ EC IC L +A CG +CK CIE + Q CP N +SE+ L F D+ + +L+ ++CP C + ++ L+ H C+ + + C Sbjct: 45 NPTASMGSSSLQAAAPLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVD-NEMLSEDQL------FPDNFAKREILSLTVRCPNSDCGEKMELRHLEKHLAQCQFATVPC 170
BLAST of SMED30021753 vs. Planmine SMEST
Match: SMESG000043533.1 (SMESG000043533.1) HSP 1 Score: 829.706 bits (2142), Expect = 0.000e+0 Identity = 421/425 (99.06%), Postives = 423/425 (99.53%), Query Frame = 1 Query: 166 MKNWTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQGLETKYRDLENVVEKIWENWNSEISNLWTNNMIQEKEISKLKTLXXXXXXXXXXXXXXTCHKLAEMLENNSYWQFSIHWNTKEMFPIRSPPFYSADKKHQIVLFIFPCGCFFDCFQKNGVCFQFVIGKTPSPSIKWEFKGIIKITLTNKDLPAESFIVTRSCEFNETLNRQIFHFAKSFKHFYQNFKIPNSVLINCTIELVK 1440 MKNWTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYL DNKS+KSTLDSDLNGIVTENSCNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQGLETKYRDLENVVEKIWENWN+EISNLWTNNMIQEKEISKLKTLSNSISEQNSSSEIITC KLAEMLENNSYWQFSIHWNTKEMFPIRSPPFYSADKKHQIVLFIFPCGCFFDCFQKNGVCFQFVIGKTPSPSIKWEFKGIIKITLTNKDLPAESFIVTRSCEFNETLNRQIFHFAKSFKHFYQNFKIPNSVLINCTIELVK Sbjct: 1 MKNWTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLTDNKSKKSTLDSDLNGIVTENSCNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQGLETKYRDLENVVEKIWENWNNEISNLWTNNMIQEKEISKLKTLSNSISEQNSSSEIITCPKLAEMLENNSYWQFSIHWNTKEMFPIRSPPFYSADKKHQIVLFIFPCGCFFDCFQKNGVCFQFVIGKTPSPSIKWEFKGIIKITLTNKDLPAESFIVTRSCEFNETLNRQIFHFAKSFKHFYQNFKIPNSVLINCTIELVK 425
BLAST of SMED30021753 vs. Planmine SMEST
Match: SMESG000009561.1 (SMESG000009561.1) HSP 1 Score: 142.51 bits (358), Expect = 3.060e-37 Identity = 123/451 (27.27%), Postives = 213/451 (47.23%), Query Frame = 1 Query: 166 MKNWTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKY---WIKYLKDNK--SEKSTLDSDLNGIVTENSCNDMIYSIELKFNQL-----TFKKEDHTKKDQTD---LEDLRNHIQGLETKYRDL----ENVVEKIWENWNSEISNLWTNNMIQEKE--------ISKLKTLXXXXXXXXXXXXXXTCHKLAEMLENNSYWQFSIHWNTKEMFPIRSPPFYSADKKHQIVLFIFPCGCFFDCFQKNGVCFQFVIG--KTPSPSIKWEFKGIIKITLTNKDLPAESFIVTRSCEF-NETLNRQIFHFAKSFKHFYQN-FKIPNSVLINCTIE 1431 M+ +W IL ++ +I+ ++ + +C+IC L +AY G C CNYCK CIE ++ + CPG C +E +S+ ++ KD G+D R+ +++CP +SC + K+ +D H C KS +ECPF E+GC + +HL + + HSK WI LK+ E S + L ++ +N +I ++ K +Q+ + E +K Q + E L++ I+ LE Y +N +EK + N N+ KE ISK ++ + C +EM + S+ I TK ++S F+S D++ Q+ L ++P G ++ + + F I K +PS + FK I + ++NK ++ +C+F ++ LN +IFHF S Q ++V+I C++E Sbjct: 1 MEKLVKMWTILDKYPFEIDPKVLIYVKCSICNGLLRNAYQGPCCCNYCKTCIEIYLGDDRKHCPGDSIEC-RQEQISMRNHIIKDRGADYRVSQLDVRCPWNSCRFQGKLLNMDDHLRTCNKSPIECPFTELGCQTILTENINIKDHLLDNICQHSKLISNWITILKNETLNCEGSAI-KQLRNVLKQN----VIVLVDRKISQVRCNLRNAEIEPLLEKIQIESIKREKLKDEIRNLEKDYGQKILFHKNELEKQRILIRKLMKNKHHKNLALSKESGNHDRKCISKFNSIQQHGRDD-------LCGVKSEMAASLSWIVTEISRKTKYKINLKSENFHSNDRQFQMNLLLYPGG--YERYTGTHLSIAFYIRPWKAVNPSKLFPFKCNILMRISNKFQTNSQLDISNNCQFKSQNLNSEIFHF--SLDELEQTAVTYSDTVVIECSVE 434
BLAST of SMED30021753 vs. Planmine SMEST
Match: SMESG000009561.1 (SMESG000009561.1) HSP 1 Score: 140.584 bits (353), Expect = 1.238e-36 Identity = 122/445 (27.42%), Postives = 211/445 (47.42%), Query Frame = 1 Query: 184 IWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKY---WIKYLKDN--KSEKSTLDSDLNGIVTENSCNDMIYSIELKFNQL-----TFKKEDHTKKDQTD---LEDLRNHIQGLETKYRDL----ENVVEKIWENWNSEISNLWTNNMIQEKE--------ISKLKTLXXXXXXXXXXXXXXTCHKLAEMLENNSYWQFSIHWNTKEMFPIRSPPFYSADKKHQIVLFIFPCGCFFDCFQKNGVCFQFVIG--KTPSPSIKWEFKGIIKITLTNKDLPAESFIVTRSCEF-NETLNRQIFHFAKSFKHFYQN-FKIPNSVLINCTIE 1431 +W IL ++ +I+ ++ + +C+IC L +AY G C CNYCK CIE ++ + CPG C +E +S+ ++ KD G+D R+ +++CP +SC + K+ +D H C KS +ECPF E+GC + +HL + + HSK WI LK+ E S + L ++ +N +I ++ K +Q+ + E +K Q + E L++ I+ LE Y +N +EK + N N+ KE ISK ++ + C +EM + S+ I TK ++S F+S D++ Q+ L ++P G ++ + + F I K +PS + FK I + ++NK ++ +C+F ++ LN +IFHF S Q ++V+I C++E Sbjct: 1 MWTILDKYPFEIDPKVLIYVKCSICNGLLRNAYQGPCCCNYCKTCIEIYLGDDRKHCPGDSIEC-RQEQISMRNHIIKDRGADYRVSQLDVRCPWNSCRFQGKLLNMDDHLRTCNKSPIECPFTELGCQTILTENINIKDHLLDNICQHSKLISNWITILKNETLNCEGSAI-KQLRNVLKQN----VIVLVDRKISQVRCNLRNAEIEPLLEKIQIESIKREKLKDEIRNLEKDYGQKILFHKNELEKQRILIRKLMKNKHHKNLALSKESGNHDRKCISKFNSIQQHGRDD-------LCGVKSEMAASLSWIVTEISRKTKYKINLKSENFHSNDRQFQMNLLLYPGG--YERYTGTHLSIAFYIRPWKAVNPSKLFPFKCNILMRISNKFQTNSQLDISNNCQFKSQNLNSEIFHF--SLDELEQTAVTYSDTVVIECSVE 428
BLAST of SMED30021753 vs. Planmine SMEST
Match: SMESG000020851.1 (SMESG000020851.1) HSP 1 Score: 128.642 bits (322), Expect = 1.352e-33 Identity = 78/261 (29.89%), Postives = 140/261 (53.64%), Query Frame = 1 Query: 175 WTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQGLETKYRDLENVVEKIWENWNSEISNLWTNNMIQEKEISKL 957 + ++WK+LG++ DI+ Q+ +C IC + L+DA GLC C+YC++CI ++ N+ CPG C E+ LS+ + D ++ R+ + CP D C +R K+ + HF VC+K + CPFNE+GC I + + HL NE+ HS+ I ++++ K+E +TL +N + +IE K + F E+ ++++ DL++ + + +LE + I N ++S L+ + +EI++L Sbjct: 7 FEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLS-RNRKCPGNKPDCQIEQ-LSLEE-IIDDSAANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEE-AFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQL 263
BLAST of SMED30021753 vs. Planmine SMEST
Match: SMESG000020851.1 (SMESG000020851.1) HSP 1 Score: 128.257 bits (321), Expect = 1.563e-33 Identity = 78/261 (29.89%), Postives = 140/261 (53.64%), Query Frame = 1 Query: 175 WTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRCIESWMDLGNQFCPGRVNSCISEESLSINRNVFKDHGSDIRLLAFEIKCPLDSCNHRCKISQLDLHFEVCEKSMMECPFNEIGCDFKSINKNVLIEHLHNEVEFHSKYWIKYLKDNKSEKSTLDSDLNGIVTENSCNDMIYSIELKFNQLTFKKEDHTKKDQTDLEDLRNHIQGLETKYRDLENVVEKIWENWNSEISNLWTNNMIQEKEISKL 957 + ++WK+LG++ DI+ Q+ +C IC + L+DA GLC C+YC++CI ++ N+ CPG C E+ LS+ + D ++ R+ + CP D C +R K+ + HF VC+K + CPFNE+GC I + + HL NE+ HS+ I ++++ K+E +TL +N + +IE K + F E+ ++++ DL++ + + +LE + I N ++S L+ + +EI++L Sbjct: 5 FEDMWKMLGKYNFDIDPQLQINLKCLICKRLLVDACCGLCYCSYCRKCITPYLS-RNRKCPGNKPDCQIEQ-LSLEE-IIDDSAANARISEIIVSCPADGCIYRDKLLTIYNHFRVCDKKSIPCPFNEMGCMKSDIKNDEISVHLRNEIYDHSQLLIDWIRNMKNEMTTLIVLKQQETAQNELKKLEKTIEDKIEE-AFNYEEEQQRNEELFRDLKDQLNIITNNTGELERKIMSIKSNNERDLSFLFESRKKLGEEINQL 261 The following BLAST results are available for this feature:
BLAST of SMED30021753 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of SMED30021753 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of SMED30021753 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30021753 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of SMED30021753 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30021753 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30021753 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30021753 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of SMED30021753 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021753 ID=SMED30021753|Name=SMED30021753|organism=Schmidtea mediterranea sexual|type=transcript|length=1481bpback to top protein sequence of SMED30021753-orf-1 >SMED30021753-orf-1 ID=SMED30021753-orf-1|Name=SMED30021753-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=426bp MKNWTNIWKILGEHKLDINSQISGFSECTICGQFLIDAYIGLCGCNYCKRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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