PDZ and LIM domain protein 7

Overview


Name	PDZ and LIM domain protein 7
Smed ID	SMED30021703
Length (bp)	639

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of PDZ and LIM domain protein 7 (SMED30021703) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for PDZ and LIM domain protein 7 (SMED30021703) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30021703

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
muscle cell	SMED30021703	SMESG000064215.1	dd_Smed_v4_12834_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30021703	SMESG000064215.1	dd_Smed_v6_12834_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Match: LDB3 (LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710])

HSP 1 Score: 64.6994 bits (156), Expect = 3.928e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992])

HSP 1 Score: 63.1586 bits (152), Expect = 4.202e-12
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFRI GG D+H  + V KV + G   D+ L+ GD I+ ING +   + H+EA   I+ S   L L + R+
Sbjct:   12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRS 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Match: LDB3 (LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710])

HSP 1 Score: 65.0846 bits (157), Expect = 4.788e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Match: LDB3 (LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710])

HSP 1 Score: 65.0846 bits (157), Expect = 5.709e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Match: LDB3 (LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710])

HSP 1 Score: 65.0846 bits (157), Expect = 7.079e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Match: magi-1 (MAGI (Membrane Associated Guanylate kinase Inverted) homolog [Source:UniProtKB/TrEMBL;Acc:D3YT29])

HSP 1 Score: 50.8322 bits (120), Expect = 2.346e-7
Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 1

Query:   76 QMNVTLYSSILALRNQTPAKNKVI-LEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKN--------HFNINSLYDNTKS--LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSS--KKLSLIIAR 543
            Q N+   ++ L +R++TPA+ +    E   N+ N  QRQ A+    + +++    S+ +  +        ++   S Y+   S  + V L R   G  +GFR+ GG +    LSV ++  G  +  D +LQ GD I++I+G       HSEA+ L++ ++  K + LI+ R
Sbjct:  381 QTNMMDSAAPLPVRSKTPAERQTSRTEEDQNVRNTLQRQPAVTSEWEGMSSAIPASRMRPSSTTLGFATPNYIPLSQYNQKPSDLITVSLIRKPVG--FGFRLLGGVESKTPLSVGQIVIGGAAEEDGRLQEGDEIVEIDGHNVEGASHSEAVVLLEAAAQNKHVKLIVRR 549

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Match: magi-1 (MAGI (Membrane Associated Guanylate kinase Inverted) homolog [Source:UniProtKB/TrEMBL;Acc:D3YT29])

HSP 1 Score: 50.8322 bits (120), Expect = 2.373e-7
Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 1

Query:   76 QMNVTLYSSILALRNQTPAKNKVI-LEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKN--------HFNINSLYDNTKS--LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSS--KKLSLIIAR 543
            Q N+   ++ L +R++TPA+ +    E   N+ N  QRQ A+    + +++    S+ +  +        ++   S Y+   S  + V L R   G  +GFR+ GG +    LSV ++  G  +  D +LQ GD I++I+G       HSEA+ L++ ++  K + LI+ R
Sbjct:  434 QTNMMDSAAPLPVRSKTPAERQTSRTEEDQNVRNTLQRQPAVTSEWEGMSSAIPASRMRPSSTTLGFATPNYIPLSQYNQKPSDLITVSLIRKPVG--FGFRLLGGVESKTPLSVGQIVIGGAAEEDGRLQEGDEIVEIDGHNVEGASHSEAVVLLEAAAQNKHVKLIVRR 602

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Match: magi-1 (MAGI (Membrane Associated Guanylate kinase Inverted) homolog [Source:UniProtKB/TrEMBL;Acc:D3YT29])

HSP 1 Score: 50.8322 bits (120), Expect = 2.426e-7
Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 1

Query:   76 QMNVTLYSSILALRNQTPAKNKVI-LEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKN--------HFNINSLYDNTKS--LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSS--KKLSLIIAR 543
            Q N+   ++ L +R++TPA+ +    E   N+ N  QRQ A+    + +++    S+ +  +        ++   S Y+   S  + V L R   G  +GFR+ GG +    LSV ++  G  +  D +LQ GD I++I+G       HSEA+ L++ ++  K + LI+ R
Sbjct:  633 QTNMMDSAAPLPVRSKTPAERQTSRTEEDQNVRNTLQRQPAVTSEWEGMSSAIPASRMRPSSTTLGFATPNYIPLSQYNQKPSDLITVSLIRKPVG--FGFRLLGGVESKTPLSVGQIVIGGAAEEDGRLQEGDEIVEIDGHNVEGASHSEAVVLLEAAAQNKHVKLIVRR 801

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Match: magi-1 (MAGI (Membrane Associated Guanylate kinase Inverted) homolog [Source:UniProtKB/TrEMBL;Acc:D3YT29])

HSP 1 Score: 50.447 bits (119), Expect = 3.399e-7
Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 1

Query:   76 QMNVTLYSSILALRNQTPAKNKVI-LEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKN--------HFNINSLYDNTKS--LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSS--KKLSLIIAR 543
            Q N+   ++ L +R++TPA+ +    E   N+ N  QRQ A+    + +++    S+ +  +        ++   S Y+   S  + V L R   G  +GFR+ GG +    LSV ++  G  +  D +LQ GD I++I+G       HSEA+ L++ ++  K + LI+ R
Sbjct:  633 QTNMMDSAAPLPVRSKTPAERQTSRTEEDQNVRNTLQRQPAVTSEWEGMSSAIPASRMRPSSTTLGFATPNYIPLSQYNQKPSDLITVSLIRKPVG--FGFRLLGGVESKTPLSVGQIVIGGAAEEDGRLQEGDEIVEIDGHNVEGASHSEAVVLLEAAAQNKHVKLIVRR 801

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Match: magi-1 (MAGI (Membrane Associated Guanylate kinase Inverted) homolog [Source:UniProtKB/TrEMBL;Acc:D3YT29])

HSP 1 Score: 50.0618 bits (118), Expect = 3.790e-7
Identity = 48/171 (28.07%), Postives = 86/171 (50.29%), Query Frame = 1

Query:   76 QMNVTLYSSILALRNQTPAKNKVI-LEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKN--------HFNINSLYDNTKS--LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSS--KKLSLIIAR 543
            Q N+   ++ L +R++TPA+ +    E   N+ N  QRQ A+    + +++    S+ +  +        ++   S Y+   S  + V L R   G  +GFR+ GG +    LSV ++  G  +  D +LQ GD I++I+G       HSEA+ L++ ++  K + LI+ R
Sbjct:  408 QTNMMDSAAPLPVRSKTPAERQTSRTEEDQNVRNTLQRQPAVTSEWEGMSSAIPASRMRPSSTTLGFATPNYIPLSQYNQKPSDLITVSLIRKPVG--FGFRLLGGVESKTPLSVGQIVIGGAAEEDGRLQEGDEIVEIDGHNVEGASHSEAVVLLEAAAQNKHVKLIVRR 576

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0329910)

HSP 1 Score: 64.6994 bits (156), Expect = 1.710e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVS 552
            L++ L R  + +PWGFR+QGG D+   L V+KV +GS S+ + LQ GDA++KIN     NL H +A +++  S     + + R  S
Sbjct:    7 LQIKLSR-FDAQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGS 91

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Match: Zasp66 (gene:FBgn0035917 transcript:FBtr0089568)

HSP 1 Score: 64.3142 bits (155), Expect = 4.626e-12
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
              V+L R+ +  PWG R+ GG+D    L + +V+ GSP+  +L  GD I KI  +   +L H++A +L + +  ++ L++ R
Sbjct:    8 FAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHR 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Match: Zasp66 (gene:FBgn0035917 transcript:FBtr0301154)

HSP 1 Score: 64.6994 bits (156), Expect = 5.036e-12
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
              V+L R+ +  PWG R+ GG+D    L + +V+ GSP+  +L  GD I KI  +   +L H++A +L + +  ++ L++ R
Sbjct:    8 FAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHR 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Match: Zasp66 (gene:FBgn0035917 transcript:FBtr0301156)

HSP 1 Score: 64.3142 bits (155), Expect = 5.650e-12
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
              V+L R+ +  PWG R+ GG+D    L + +V+ GSP+  +L  GD I KI  +   +L H++A +L + +  ++ L++ R
Sbjct:    8 FAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHR 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Match: Zasp66 (gene:FBgn0035917 transcript:FBtr0089563)

HSP 1 Score: 64.3142 bits (155), Expect = 5.815e-12
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
              V+L R+ +  PWG R+ GG+D    L + +V+ GSP+  +L  GD I KI  +   +L H++A +L + +  ++ L++ R
Sbjct:    8 FAVVLLRDGQATPWGIRLVGGNDLDTPLIITRVQVGSPAHGELLRGDIISKIGEYDARDLSHADAQQLFRGAGNEIRLVVHR 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Match: ldb3b (LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032])

HSP 1 Score: 67.3958 bits (163), Expect = 1.028e-13
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + S  L  GD I  I+G +T  + H EA   IK ++ KLSL + R+
Sbjct:   13 PWGFRLQGGKDFNMSLTISRITPGSKAASGNLNQGDIITAIDGVSTEGMTHLEAQNKIKAATTKLSLTMQRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Match: ldb3b (LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032])

HSP 1 Score: 67.3958 bits (163), Expect = 2.787e-13
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + S  L  GD I  I+G +T  + H EA   IK ++ KLSL + R+
Sbjct:   13 PWGFRLQGGKDFNMSLTISRITPGSKAASGNLNQGDIITAIDGVSTEGMTHLEAQNKIKAATTKLSLTMQRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Match: ldb3b (LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032])

HSP 1 Score: 67.0106 bits (162), Expect = 2.981e-13
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + S  L  GD I  I+G +T  + H EA   IK ++ KLSL + R+
Sbjct:   10 PWGFRLQGGKDFNMSLTISRITPGSKAASGNLNQGDIITAIDGVSTEGMTHLEAQNKIKAATTKLSLTMQRS 81

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Match: ldb3b (LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032])

HSP 1 Score: 67.0106 bits (162), Expect = 6.846e-13
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + S  L  GD I  I+G +T  + H EA   IK ++ KLSL + R+
Sbjct:   13 PWGFRLQGGKDFNMSLTISRITPGSKAASGNLNQGDIITAIDGVSTEGMTHLEAQNKIKAATTKLSLTMQRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Match: ldb3b (LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-030131-6032])

HSP 1 Score: 67.0106 bits (162), Expect = 6.846e-13
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + S  L  GD I  I+G +T  + H EA   IK ++ KLSL + R+
Sbjct:   13 PWGFRLQGGKDFNMSLTISRITPGSKAASGNLNQGDIITAIDGVSTEGMTHLEAQNKIKAATTKLSLTMQRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Match: foxi4.2 (forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GENE-487658])

HSP 1 Score: 65.4698 bits (158), Expect = 2.315e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+ GG D++  L + ++  GS S  + L  GD I+ I+GF T N+ H+EA + IK ++ +L L I R  +   I SP
Sbjct:   12 PWGFRLTGGIDFNQPLIISRITPGSKSSLANLCPGDVILAIDGFGTENMTHAEAQDRIKAATDQLCLKIER--AETRIWSP 90

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Match: arhgef40 (Rho guanine nucleotide exchange factor 40 [Source:Xenbase;Acc:XB-GENE-6050452])

HSP 1 Score: 63.929 bits (154), Expect = 3.929e-12
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNV 558
            PWGFR+QGG D+++ LS+ ++  G  ++ + +  GD +++I G +T ++ H EA   I+ SS KL L+++R    V
Sbjct:   13 PWGFRLQGGKDFNMPLSISRLTPGGKAELAGVNVGDWLLQIEGDSTTSMTHIEAQNKIRASSNKLGLVLSRFAVGV 88

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Match: foxi4.2 (forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GENE-487658])

HSP 1 Score: 64.6994 bits (156), Expect = 4.639e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+ GG D++  L + ++  GS S  + L  GD I+ I+GF T N+ H+EA + IK ++ +L L I R  +   I SP
Sbjct:   12 PWGFRLTGGIDFNQPLIISRITPGSKSSLANLCPGDVILAIDGFGTENMTHAEAQDRIKAATDQLCLKIER--AETRIWSP 90

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Match: foxi4.2 (forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GENE-487658])

HSP 1 Score: 65.0846 bits (157), Expect = 4.797e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+ GG D++  L + ++  GS S  + L  GD I+ I+GF T N+ H+EA + IK ++ +L L I R  +   I SP
Sbjct:   12 PWGFRLTGGIDFNQPLIISRITPGSKSSLANLCPGDVILAIDGFGTENMTHAEAQDRIKAATDQLCLKIER--AETRIWSP 90

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Match: foxi4.2 (forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GENE-487658])

HSP 1 Score: 65.0846 bits (157), Expect = 6.839e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+ GG D++  L + ++  GS S  + L  GD I+ I+GF T N+ H+EA + IK ++ +L L I R  +   I SP
Sbjct:   12 PWGFRLTGGIDFNQPLIISRITPGSKSSLANLCPGDVILAIDGFGTENMTHAEAQDRIKAATDQLCLKIER--AETRIWSP 90

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Match: Magi2 (membrane associated guanylate kinase, WW and PDZ domain containing 2 [Source:MGI Symbol;Acc:MGI:1354953])

HSP 1 Score: 65.855 bits (159), Expect = 4.751e-13
Identity = 30/89 (33.71%), Postives = 55/89 (61.80%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNV 558
              V +E+ ++G  +GF I+GG +Y + L V ++    P+  + +++ GD II+ING +T ++ H+ AIELIK   +++ L++ R    V
Sbjct:   79 FTVDMEKGAKG--FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGQV 165

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Match: Ldb3 (LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:1344412])

HSP 1 Score: 65.0846 bits (157), Expect = 3.379e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Match: Ldb3 (LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:1344412])

HSP 1 Score: 65.0846 bits (157), Expect = 4.781e-12
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Match: Magi1 (membrane associated guanylate kinase, WW and PDZ domain containing 1 [Source:MGI Symbol;Acc:MGI:1203522])

HSP 1 Score: 63.929 bits (154), Expect = 1.469e-11
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1

Query:  304 VILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSD--SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNV 558
            V LER ++G  +GF ++GG +Y++ L V ++    P++   K++ GD I++ING  T N+ HS AIELIK   +++ L + R   +V
Sbjct:  917 VELERGAKG--FGFSLRGGREYNMDLYVLRLAEDGPAERCGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLRRGDGSV 1001

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Match: Ldb3 (LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:1344412])

HSP 1 Score: 63.1586 bits (152), Expect = 2.690e-11
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Match: sp|Q9PU47|PDLI3_CHICK (PDZ and LIM domain protein 3 OS=Gallus gallus OX=9031 GN=PDLIM3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.918e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+ GG D++  L + ++  GS  S + L  GD I+ ING +T N+ H++A E IK ++ +LSL I R 
Sbjct:   12 PWGFRLSGGIDFNQPLIITRITPGSKASTANLCPGDIIVAINGLSTENMTHNDAQERIKAAAHQLSLRIERA 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Match: sp|Q6GLJ6|PDLI3_XENLA (PDZ and LIM domain protein 3 OS=Xenopus laevis OX=8355 GN=pdlim3 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.368e-10
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNV 558
            PWGFR+ GG D++  L + ++  GS S  + L  GD I+ I+GF+T  + H+EA + IK ++ +L L I R  + +
Sbjct:   12 PWGFRLTGGIDFNQPLVISRITPGSKSSVANLCPGDVILAIDGFSTETMTHAEAQDRIKAATDQLCLKIDRAETRI 87

[Close]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Match: sp|O75112|LDB3_HUMAN (LIM domain-binding protein 3 OS=Homo sapiens OX=9606 GN=LDB3 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 2.275e-10
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Match: sp|Q9JKS4|LDB3_MOUSE (LIM domain-binding protein 3 OS=Mus musculus OX=10090 GN=Ldb3 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.904e-10
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSI 564
            PWGFR+QGG D+++ L++ ++  GS  + S+L  GD ++ I+G  T  + H EA   IK +S  LSL + ++   + I
Sbjct:   12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKRPIPI 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Match: sp|Q66HS7|PDLI3_RAT (PDZ and LIM domain protein 3 OS=Rattus norvegicus OX=10116 GN=Pdlim3 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.906e-10
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDSK-LQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+ GG D++  L + ++  GS +++  L  GD I+ I+GF T ++ H++A + IK +S +L L I R 
Sbjct:   12 PWGFRLSGGIDFNQPLVITRITPGSKAEAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRA 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Match: A0A074ZT40 (PDZ domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_04294 PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.152e-26
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1

Query:  271 NSLYDNTKS-LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTV-SNVSIMSPFNLINFGA 597
            N + + ++S L+VIL R SE  PWGFRIQGG DYHLQL+V K +SGSPS+  L  GDAII ING  T NL H EA E I+ S  +L + I+R +  + S + P     F A
Sbjct:   54 NDVEEQSRSPLDVILRRGSEANPWGFRIQGGSDYHLQLTVCKTQSGSPSEGVLYRGDAIIAINGETTRNLSHGEATEKIRSSGTELQMTISRKLREDFSDLRPKGPFKFSA 164

[Close]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Match: G7Y9V3 (PDZ and LIM domain protein 2 OS=Clonorchis sinensis OX=79923 GN=Pdlim2 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.717e-26
Identity = 55/101 (54.46%), Postives = 65/101 (64.36%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTV-SNVSIMSPFNLINFGA 597
            L+VIL R SE  PWGFRIQGG DYHLQL+V K +SGSPS+  L  GDAII ING  T NL H EA E I+ S  +L + IAR +  + S + P     F A
Sbjct:   64 LDVILRRVSESNPWGFRIQGGSDYHLQLTVCKTQSGSPSEGVLYRGDAIIAINGETTRNLSHGEATEKIRSSGTELQMTIARKLREDFSDLRPKGPFKFSA 164

[Close]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Match: A0A4S2M6D6 (PDZ domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_002463 PE=4 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.140e-25
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1

Query:  271 NSLYDNTKS-LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTV-SNVSIMSPFNLINFGA 597
            N + + ++S L+VIL R SE  PWGFRIQGG DYHLQL+V K +SGSPS+  L  GDAII ING  T +L H EA E I+ S  +L + IAR +  + S + P     F A
Sbjct:   54 NDVEEQSRSPLDVILRRGSEANPWGFRIQGGSDYHLQLTVCKTQSGSPSEGVLYRGDAIIAINGETTRHLSHGEATEKIRSSGTELQMTIARKLRDDFSDLRPKGPFKFSA 164

[Close]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Match: A0A183LDU4 (PDZ domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS1969 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.912e-22
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1

Query:  283 DNTKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART-VSNVSIMSPFNLINFGA 597
            + T  + ++L R S   PWGFR+QGG DYHLQL++ K +SGSPS+  LQSGD I+ ING     L H EA + I+ +   L LI+AR    ++S + P  L+ F A
Sbjct:   79 EETTPMNIVLRRASSDSPWGFRVQGGSDYHLQLTICKTQSGSPSEGILQSGDEILSINGENARILSHEEATQKIRSAGTDLQLIVARRQTCDLSDIRPKGLLKFTA 184

[Close]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Match: A0A504YH14 (PDZ and LIM domain protein 2 OS=Fasciola gigantica OX=46835 GN=FGIG_04936 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.856e-22
Identity = 62/150 (41.33%), Postives = 78/150 (52.00%), Query Frame = 1

Query:  187 QTAILQHNQEINNEHEI--SQAKHKNHFNINSLYDNTKS--------LEVILERNSEGEPWGFRIQGGHDYHLQLSVKK--VKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSN-VSIMSPFNLINFGA 597
            Q++ + H  ++NN   +  S   H    N  SL+  T          L V L R+S   PWGFR+QGG DY LQL+V K   +SGSPS+  L  GDAII ING +  NL H +A E IK S   L L IAR     +S + P   I F A
Sbjct:   19 QSSRISHAPKLNNATPVASSSKPHTTLTNALSLFTGTSEISEPAPARLNVALRRHSSANPWGFRVQGGSDYKLQLTVCKASTQSGSPSEGVLHRGDAIISINGESARNLSHEQATEKIKSSGTDLQLTIARRQGGELSDLRPKGQIKFTA 168

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000055436.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000029.1:6643679:6650922:1 gene:ENSAMXG00000031969.1 transcript:ENSAMXT00000055436.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 1.384e-12
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+ GG D++L L++ ++  SG  + + +  GD +I I+G +T NL H EA   IK  S  L L + RT
Sbjct:   11 PWGFRLSGGKDFNLPLTISRLTDSGKAAKAGVGVGDMVITIDGLSTENLNHLEAQNKIKACSGNLKLTMQRT 82

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000049893.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:9951336:9975990:-1 gene:ENSAMXG00000038221.1 transcript:ENSAMXT00000049893.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.2326 bits (147), Expect = 7.631e-12
Identity = 27/72 (37.50%), Postives = 45/72 (62.50%), Query Frame = 1

Query:  331 EPWGFRIQGGHDYHLQLSVKKVKSGSPSDSK-LQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
             PWGFR+QGG D+++ L++ ++  GS + +  L  GD I+ I+G +T  + H EA   IK ++  L+L + R
Sbjct:   12 SPWGFRLQGGKDFNMPLTISRITPGSKAAAGNLVQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLALTMTR 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000038897.1 (pep primary_assembly:Astyanax_mexicanus-2.0:25:9932529:9968599:-1 gene:ENSAMXG00000038221.1 transcript:ENSAMXT00000038897.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.3882 bits (150), Expect = 2.536e-11
Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS + +  L  GD I+ I+G +T  + H EA   IK ++  L+L + R+
Sbjct:   13 PWGFRLQGGKDFNMPLTISRITPGSKAAAGNLVQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLALTMTRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000037667.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000029.1:6644446:6658599:1 gene:ENSAMXG00000031969.1 transcript:ENSAMXT00000037667.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 60.4622 bits (145), Expect = 4.190e-11
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            PWGFR+ GG D++L L++ ++  SG  + + +  GD +I I+G +T NL H EA   IK  S  L L + R
Sbjct:   14 PWGFRLSGGKDFNLPLTISRLTDSGKAAKAGVGVGDMVITIDGLSTENLNHLEAQNKIKACSGNLKLTMQR 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Match: ENSAMXT00000039965.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000029.1:6644446:6658599:1 gene:ENSAMXG00000031969.1 transcript:ENSAMXT00000039965.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.6918 bits (143), Expect = 6.766e-11
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            PWGFR+ GG D++L L++ ++  SG  + + +  GD +I I+G +T NL H EA   IK  S  L L + R
Sbjct:   14 PWGFRLSGGKDFNLPLTISRLTDSGKAAKAGVGVGDMVITIDGLSTENLNHLEAQNKIKACSGNLKLTMQR 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002484.1 (pep scaffold:Pmarinus_7.0:GL476548:370238:411117:1 gene:ENSPMAG00000002245.1 transcript:ENSPMAT00000002484.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.7658 bits (138), Expect = 2.464e-10
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIK-CSSKKLSLIIAR 543
            PWGFR+ GG D    L++ +V  GS  S + L  GD I+ I G     + H+EA E IK CS+  L+L I R
Sbjct:   12 PWGFRLVGGRDLDQPLTISRVTPGSVASSANLSPGDVILAIEGENAEEMTHAEAQERIKACSTATLTLKIDR 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007081.1 (pep scaffold:Pmarinus_7.0:GL476780:360940:430661:-1 gene:ENSPMAG00000006392.1 transcript:ENSPMAT00000007081.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 57.3806 bits (137), Expect = 4.211e-10
Identity = 26/72 (36.11%), Postives = 45/72 (62.50%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIART 546
            PWGFR+QGG D+++ L++ ++  GS  + + +  GD +++I+G  T ++ H EA   IK S   L L + R+
Sbjct:   13 PWGFRLQGGKDFNMPLTISRISPGSKAAQATVVPGDVVLQIDGTPTDSMTHLEAQTKIKNSVGNLRLTLQRS 84

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003180.1 (pep scaffold:Pmarinus_7.0:GL477326:20216:45383:1 gene:ENSPMAG00000002903.1 transcript:ENSPMAT00000003180.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 54.6842 bits (130), Expect = 3.204e-9
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1

Query:  310 LERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIK 507
            LER + G  +GF I+GG +Y + L + +V    P+   S+++ GD I++ING +T ++ H+ AIELIK
Sbjct:  709 LERGNTG--FGFSIRGGKEYSMDLFILRVAEEGPAIRQSRMRVGDQIMEINGESTRDMMHARAIELIK 774

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Match: LNX2 (ligand of numb-protein X 2 [Source:HGNC Symbol;Acc:HGNC:20421])

HSP 1 Score: 51.6026 bits (122), Expect = 3.044e-8
Identity = 28/84 (33.33%), Postives = 48/84 (57.14%), Query Frame = 1

Query:  301 EVILERNSEGEPWGFRIQGGHD---YHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLII 537
            EVIL R++ G  WGF I GG++    +    +K +  G+P+  D +L+ GD I+ +NG  T  + H+  + L+K    K++L +
Sbjct:  252 EVILRRSTSGS-WGFSIVGGYEENHSNQPFFIKSIVLGTPAYNDGRLKCGDMIVAVNGHGTTGMSHAALVTLLKELRGKVTLTV 334

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010851.1 (pep scaffold:Pmarinus_7.0:GL477227:46102:76179:-1 gene:ENSPMAG00000009830.1 transcript:ENSPMAT00000010851.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 2.014e-6
Identity = 28/93 (30.11%), Postives = 53/93 (56.99%), Query Frame = 1

Query:  292 KSLEVILERNSEGEPWGFRIQGGHDYHLQLS----VKKVKSGSPSDSK--LQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVS 552
            K++E+ L +  EG  +GF I+GG       S    V  V+ G P+D +  L++GD ++ ++G + H + H+EA+ +++   ++ +L I   VS
Sbjct:    6 KTIEITLYK--EGNSFGFVIRGGAHEQRHKSRPILVTCVRPGGPADREGTLKAGDRLLNVDGMSLHGVSHAEALAILRECGQEATLQIEYDVS 96

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Match: EDO44823 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUW8])

HSP 1 Score: 59.6918 bits (143), Expect = 1.459e-10
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSD---SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTV 549
            + V +E + EG  +GF +QGG D +L + V K+  G+P+D    +LQ GD II ING A   L H E ++LI+  S+  S  +  T+
Sbjct:  457 ITVRMEPDKEGR-FGFNVQGGADINLPVIVSKIARGTPADLCMPQLQEGDEIIFINGQAMKGLIHQEIVDLIRSVSQSRSNTLILTI 542

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Match: EDO37190 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGH9])

HSP 1 Score: 56.225 bits (134), Expect = 2.170e-9
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  322 SEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSK--LQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNV 558
            S G PWGF + GG +++ +L V K+  G  +D    L  GD ++ ING     +  SEAIE I+CS + + L I R  S+V
Sbjct:   18 SGGSPWGFTLHGGSEFNSKLRVAKITPGGKADQTRVLDVGDEVVAINGMIC--VARSEAIEQIRCSRQSVRLTIKRGSSDV 96

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Match: EDO47763 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKY1])

HSP 1 Score: 50.0618 bits (118), Expect = 1.436e-8
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 1

Query:  328 GEPWGFRIQGGHDYHLQLSVKKVKSGSPS-DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            G PWGFR++GG D+    +V ++  G  +  + L+  D I+ ING    ++ H EA E IK +   L L + R
Sbjct:   13 GGPWGFRLKGGKDFGQIPTVSQLTPGGKAITNGLRVEDQILSINGMGCEDMTHMEAQESIKRTGNALRLQVRR 85

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Match: EDO42539 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S157])

HSP 1 Score: 53.5286 bits (127), Expect = 1.809e-8
Identity = 29/87 (33.33%), Postives = 56/87 (64.37%), Query Frame = 1

Query:  289 TKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            T+ LE+ L R ++G  +GF I+GG +  + + V K+  G  +  D +++ GD +++ING +T ++ H++AI +I+  S K+ L++ R
Sbjct: 1047 TQVLEIELIRKNQG--YGFSIRGGQEMDMPIYVLKIAEGGVADLDGRIKVGDEVLEINGRSTQHMLHTDAISMIRGGS-KVRLVLRR 1130

HSP 2 Score: 46.2098 bits (108), Expect = 4.501e-6
Identity = 24/87 (27.59%), Postives = 51/87 (58.62%), Query Frame = 1

Query:  265 NINSLYDNTKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSP--SDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSK 519
            ++N  +D++    + L R   G  +GFRI GG + + Q+++  +  G+P  +D +L+ GD I+ ++G +  +  H + I L+K +++
Sbjct:  672 HLNRGHDDSVDYYITLHRGESG--FGFRIVGGKEDNTQVAIGTIVDGTPAAADGRLRRGDEILYVDGVSVIDGYHRDVISLMKSAAQ 756

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Match: EDO30217 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1F1])

HSP 1 Score: 49.6766 bits (117), Expect = 1.954e-8
Identity = 26/83 (31.33%), Postives = 46/83 (55.42%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
             +V+L   S G PWGFR+QGG D+   L + KV+ GS ++ + ++    +  IN      + H +A+  IK +   L+L++ +
Sbjct:    7 FQVVL---SGGAPWGFRLQGGKDFRAPLKIAKVEQGSKAERAGIRPNLYVRSINNDPCETMSHGDALNNIKRTGTNLNLLLCK 86

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Match: pdlim5b (PDZ and LIM domain protein 5 [Source:NCBI gene;Acc:101158216])

HSP 1 Score: 62.7734 bits (151), Expect = 2.294e-11
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVS 561
            PWGFR+QGG D+ + L++ ++ + G  + +++  GD I+ ING +T ++ H EA   IK  +  LSL + R VS VS
Sbjct:   14 PWGFRLQGGKDFCMPLTISRLTEGGKAASARMSIGDVILSINGISTESMNHLEAQNKIKACTGTLSLTLQR-VSAVS 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Match: ldb3b (LIM domain-binding protein 3 [Source:NCBI gene;Acc:101168991])

HSP 1 Score: 61.2326 bits (147), Expect = 6.036e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLII--ARTVSNVSIMSP 573
            PWGFR+QGG D+++ L++ ++   S  +   L  GD I  I+G +T  L H EA   IK ++ KL+L +  +R  + V   +P
Sbjct:   13 PWGFRLQGGKDFNMPLTISRITPASKAAGGSLAQGDIITAIDGVSTEGLTHLEAQNKIKSATNKLTLTMQKSRRPAPVPTATP 95

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Match: pdlim4 (PDZ and LIM domain 4 [Source:NCBI gene;Acc:101166681])

HSP 1 Score: 61.2326 bits (147), Expect = 6.779e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGS-PSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+ GG D+   L+V +V  GS  +   L  GD I+ ING +T ++ H EA   IK  +++L+L I+R   N  + SP
Sbjct:   12 PWGFRLVGGRDFSTPLTVSRVTPGSKAAQGDLCPGDTILTINGDSTEHMTHMEAQNRIKTCTQQLTLSISR-YGNGRLGSP 91

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Match: pdlim5b (PDZ and LIM domain protein 5 [Source:NCBI gene;Acc:101158216])

HSP 1 Score: 61.6178 bits (148), Expect = 6.844e-11
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKV-KSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVS 561
            PWGFR+QGG D+ + L++ ++ + G  + +++  GD I+ ING +T ++ H EA   IK  +  LSL + R VS VS
Sbjct:   14 PWGFRLQGGKDFCMPLTISRLTEGGKAASARMSIGDVILSINGISTESMNHLEAQNKIKACTGTLSLTLQR-VSAVS 89

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Match: ldb3a (LIM domain-binding protein 3 [Source:NCBI gene;Acc:101165171])

HSP 1 Score: 60.8474 bits (146), Expect = 7.444e-11
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1

Query:  334 PWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSP 573
            PWGFR+QGG D+++ L++ ++  GS +    L  GD I+ I+G +T  + H EA   IK ++  L+L ++++     + +P
Sbjct:   13 PWGFRLQGGKDFNMPLTISRITPGSKAALGNLIQGDVIVAIDGVSTEGMTHLEAQNKIKMANHSLALTMSKSKRPPPLAAP 93

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Match: SMESG000064215.1 (SMESG000064215.1)

HSP 1 Score: 363.229 bits (931), Expect = 7.655e-130
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1

Query:   79 MNVTLYSSILALRNQTPAKNKVILEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKNHFNINSLYDNTKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSPFNLINFGAAFGH 609
            MNVTLYSSILALRNQTPAKNKVILEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKNHFNINSLYDNTKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSPFNLINFGAAFGH
Sbjct:    1 MNVTLYSSILALRNQTPAKNKVILEGCANIVNPPQRQTAILQHNQEINNEHEISQAKHKNHFNINSLYDNTKSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTVSNVSIMSPFNLINFGAAFGH 177

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Match: SMESG000012918.1 (SMESG000012918.1)

HSP 1 Score: 63.929 bits (154), Expect = 7.070e-12
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1

Query:  301 EVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDS-KLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            E+IL    +G PWGFRI    D +  L V +++  SP+ + KL+ GD I+ IN F+   L HS+AIELI  + K+L L++ R
Sbjct:    7 EIILR---DGPPWGFRIY--EDENRGLIVHRIRQWSPAQTAKLKEGDVILAINRFSARYLSHSDAIELIDVTFKELLLLVGR 83

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Match: SMESG000029617.1 (SMESG000029617.1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.173e-12
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1

Query:  292 KSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSD-SKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            K +   L +     PWGFRIQGG D++  L + ++   S +D S L+ GD I KIN F T  +CH+EA ++I  S   L+L I R
Sbjct:    2 KQMNFNLSKAGLHNPWGFRIQGGRDFNRPLIISRITCDSVADNSGLKCGDRITKINNFDTGFICHNEAQQVIIESGNTLNLEITR 86

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Match: SMESG000023284.1 (SMESG000023284.1)

HSP 1 Score: 62.003 bits (149), Expect = 4.175e-11
Identity = 31/84 (36.90%), Postives = 49/84 (58.33%), Query Frame = 1

Query:  292 KSLEVILERNSEGEPWGFRIQGGHDYHLQLSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIAR 543
            ++L + L R++   PWGFR+QGG D    LSV++V SGSP++  LQ  D I  I+     +    +  +LI+ S  +L+ I+ R
Sbjct:    2 QTLNLRLTRDNLSRPWGFRLQGGSDTGYPLSVQRVFSGSPAEGILQRNDEIKIIDNSDVEHGTLKQVQDLIRTSGSQLNFIVVR 85

[Close]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Match: SMESG000030959.1 (SMESG000030959.1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.434e-10
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 1

Query:  298 LEVILERNSEGEPWGFRIQGGHDYH-LQLSVKKVKSGSPS--DSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLSLIIARTV 549
             +V L R S+G  +GF I+GG D++ + L V ++    P+  D +L+ GD I++ING +T  + H++AI +I+   K + L++ R+ 
Sbjct: 1282 FDVTLNRGSKG--FGFSIRGGQDFNKMPLFVLRIADDGPAKQDGRLKVGDKILQINGKSTTGMTHNQAINIIQAGGKSIRLLVRRSA 1366

The following BLAST results are available for this feature:

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Yeast
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
LDB3	3.928e-12	37.18	LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:...	[more]
PDLIM2	4.202e-12	41.67	PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:...	[more]
LDB3	4.788e-12	37.18	LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:...	[more]
LDB3	5.709e-12	37.18	LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:...	[more]
LDB3	7.079e-12	37.18	LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
magi-1	2.346e-7	28.07	MAGI (Membrane Associated Guanylate kinase Inverte...	[more]
magi-1	2.373e-7	28.07	MAGI (Membrane Associated Guanylate kinase Inverte...	[more]
magi-1	2.426e-7	28.07	MAGI (Membrane Associated Guanylate kinase Inverte...	[more]
magi-1	3.399e-7	28.07	MAGI (Membrane Associated Guanylate kinase Inverte...	[more]
magi-1	3.790e-7	28.07	MAGI (Membrane Associated Guanylate kinase Inverte...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Zasp52	1.710e-12	39.53	gene:FBgn0265991 transcript:FBtr0329910	[more]
Zasp66	4.626e-12	32.93	gene:FBgn0035917 transcript:FBtr0089568	[more]
Zasp66	5.036e-12	32.93	gene:FBgn0035917 transcript:FBtr0301154	[more]
Zasp66	5.650e-12	32.93	gene:FBgn0035917 transcript:FBtr0301156	[more]
Zasp66	5.815e-12	32.93	gene:FBgn0035917 transcript:FBtr0089563	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ldb3b	1.028e-13	41.67	LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
ldb3b	2.787e-13	41.67	LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
ldb3b	2.981e-13	41.67	LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
ldb3b	6.846e-13	41.67	LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-03...	[more]
ldb3b	6.846e-13	41.67	LIM domain binding 3b [Source:ZFIN;Acc:ZDB-GENE-03...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
foxi4.2	2.315e-12	40.74	forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GEN...	[more]
arhgef40	3.929e-12	36.84	Rho guanine nucleotide exchange factor 40 [Source:...	[more]
foxi4.2	4.639e-12	40.74	forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GEN...	[more]
foxi4.2	4.797e-12	40.74	forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GEN...	[more]
foxi4.2	6.839e-12	40.74	forkhead box I4, gene 2 [Source:Xenbase;Acc:XB-GEN...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Magi2	4.751e-13	33.71	membrane associated guanylate kinase, WW and PDZ d...	[more]
Ldb3	3.379e-12	37.18	LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:13...	[more]
Ldb3	4.781e-12	37.18	LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:13...	[more]
Magi1	1.469e-11	37.93	membrane associated guanylate kinase, WW and PDZ d...	[more]
Ldb3	2.690e-11	37.18	LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:13...	[more]

BLAST of PDZ and LIM domain protein 7 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q9PU47\|PDLI3_CHICK	4.918e-11	43.06	PDZ and LIM domain protein 3 OS=Gallus gallus OX=9...	[more]
sp\|Q6GLJ6\|PDLI3_XENLA	1.368e-10	38.16	PDZ and LIM domain protein 3 OS=Xenopus laevis OX=...	[more]
sp\|O75112\|LDB3_HUMAN	2.275e-10	37.18	LIM domain-binding protein 3 OS=Homo sapiens OX=96...	[more]
sp\|Q9JKS4\|LDB3_MOUSE	2.904e-10	37.18	LIM domain-binding protein 3 OS=Mus musculus OX=10...	[more]
sp\|Q66HS7\|PDLI3_RAT	3.906e-10	38.89	PDZ and LIM domain protein 3 OS=Rattus norvegicus ...	[more]

BLAST of PDZ and LIM domain protein 7 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A074ZT40	5.152e-26	50.45	PDZ domain-containing protein OS=Opisthorchis vive...	[more]
G7Y9V3	8.717e-26	54.46	PDZ and LIM domain protein 2 OS=Clonorchis sinensi...	[more]
A0A4S2M6D6	1.140e-25	50.45	PDZ domain-containing protein OS=Opisthorchis feli...	[more]
A0A183LDU4	2.912e-22	45.28	PDZ domain-containing protein OS=Schistosoma margr...	[more]
A0A504YH14	9.856e-22	41.33	PDZ and LIM domain protein 2 OS=Fasciola gigantica...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000055436.1	1.384e-12	41.67	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000049893.1	7.631e-12	37.50	pep primary_assembly:Astyanax_mexicanus-2.0:25:995...	[more]
ENSAMXT00000038897.1	2.536e-11	37.50	pep primary_assembly:Astyanax_mexicanus-2.0:25:993...	[more]
ENSAMXT00000037667.1	4.190e-11	40.85	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000039965.1	6.766e-11	40.85	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSPMAT00000002484.1	2.464e-10	43.06	pep scaffold:Pmarinus_7.0:GL476548:370238:411117:1...	[more]
ENSPMAT00000007081.1	4.211e-10	36.11	pep scaffold:Pmarinus_7.0:GL476780:360940:430661:-...	[more]
ENSPMAT00000003180.1	3.204e-9	41.18	pep scaffold:Pmarinus_7.0:GL477326:20216:45383:1 g...	[more]
LNX2	3.044e-8	33.33	ligand of numb-protein X 2 [Source:HGNC Symbol;Acc...	[more]
ENSPMAT00000010851.1	2.014e-6	30.11	pep scaffold:Pmarinus_7.0:GL477227:46102:76179:-1 ...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO44823	1.459e-10	39.08	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37190	2.170e-9	39.51	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO47763	1.436e-8	35.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO42539	1.809e-8	33.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO30217	1.954e-8	31.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pdlim5b	2.294e-11	40.26	PDZ and LIM domain protein 5 [Source:NCBI gene;Acc...	[more]
ldb3b	6.036e-11	36.14	LIM domain-binding protein 3 [Source:NCBI gene;Acc...	[more]
pdlim4	6.779e-11	40.74	PDZ and LIM domain 4 [Source:NCBI gene;Acc:1011666...	[more]
pdlim5b	6.844e-11	40.26	PDZ and LIM domain protein 5 [Source:NCBI gene;Acc...	[more]
ldb3a	7.444e-11	33.33	LIM domain-binding protein 3 [Source:NCBI gene;Acc...	[more]

BLAST of PDZ and LIM domain protein 7 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000064215.1	7.655e-130	100.00	SMESG000064215.1	[more]
SMESG000012918.1	7.070e-12	42.68	SMESG000012918.1	[more]
SMESG000029617.1	8.173e-12	41.18	SMESG000029617.1	[more]
SMESG000023284.1	4.175e-11	36.90	SMESG000023284.1	[more]
SMESG000030959.1	1.434e-10	34.48	SMESG000030959.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30021703 ID=SMED30021703|Name=PDZ and LIM domain protein 7|organism=Schmidtea mediterranea sexual|type=transcript|length=639bp
CCAATCGCCAGATCACATTGTAGGTCTATAATAATATCATAGAGATTAGA
TTTTTTTTTATTTCTTTTCTATTTTCAAATGAATGTGACTCTCTATTCGT
CAATTCTTGCATTGCGAAATCAAACTCCGGCTAAAAATAAAGTGATTTTA
GAAGGATGCGCTAATATAGTCAATCCACCACAAAGGCAAACGGCAATATT
GCAGCATAATCAGGAAATAAACAATGAGCATGAAATTTCTCAAGCAAAAC
ACAAAAATCATTTCAACATCAATTCACTGTATGACAACACGAAATCTCTA
GAAGTCATTTTGGAGCGCAACAGTGAAGGTGAACCATGGGGATTTAGGAT
ACAAGGAGGACATGACTATCACTTGCAACTTTCAGTTAAAAAGGTAAAAT
CTGGTAGTCCATCTGATAGTAAATTACAATCTGGAGATGCTATTATCAAA
ATAAATGGATTTGCTACTCACAATCTTTGTCATTCTGAAGCAATAGAGTT
AATTAAATGTTCCAGTAAAAAATTATCGCTGATTATAGCAAGGACGGTTT
CGAATGTTTCCATTATGTCCCCTTTCAATTTGATCAATTTTGGAGCAGCA
TTTGGACATTAATTTTGTCTGTAGTTTTCTGTTGTTGTA

protein sequence of SMED30021703-orf-1

>SMED30021703-orf-1 ID=SMED30021703-orf-1|Name=SMED30021703-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=178bp
MNVTLYSSILALRNQTPAKNKVILEGCANIVNPPQRQTAILQHNQEINNE
HEISQAKHKNHFNINSLYDNTKSLEVILERNSEGEPWGFRIQGGHDYHLQ
LSVKKVKSGSPSDSKLQSGDAIIKINGFATHNLCHSEAIELIKCSSKKLS
LIIARTVSNVSIMSPFNLINFGAAFGH*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000418	head

Vocabulary: **INTERPRO**
Term	Definition
IPR036034	PDZ_sf
IPR001478	PDZ

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding
GO:0046872	metal ion binding
GO:0051393	alpha-actinin binding
GO:0008270	zinc ion binding

Vocabulary: **cellular component**
Term	Definition
GO:0030018	Z disc
GO:0030027	lamellipodium
GO:0042995	cell projection
GO:0001725	stress fiber
GO:0005737	cytoplasm
GO:0005856	cytoskeleton
GO:0005925	focal adhesion
GO:0015629	actin cytoskeleton

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001478	PDZ domain	SMART	SM00228	pdz_new	coord: 85..157 e-value: 7.6E-10 score: 48.7
IPR001478	PDZ domain	PFAM	PF00595	PDZ	coord: 75..153 e-value: 1.2E-13 score: 51.2
IPR001478	PDZ domain	PROSITE	PS50106	PDZ	coord: 75..157 score: 18.174
IPR036034	PDZ superfamily	GENE3D	G3DSA:2.30.42.10		coord: 69..166 e-value: 1.3E-22 score: 81.4
IPR036034	PDZ superfamily	SUPERFAMILY	SSF50156	PDZ domain-like	coord: 68..158
None	No IPR available	PANTHER	PTHR24214:SF38	FI06453P-RELATED	coord: 72..158
None	No IPR available	PANTHER	PTHR24214	FAMILY NOT NAMED	coord: 72..158
None	No IPR available	CDD	cd00992	PDZ_signaling	coord: 75..154 e-value: 1.21198E-18 score: 74.1402

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PDZ and LIM domain protein 7

Zeng et. al., 2018

▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

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