SMED30021678

Overview


Name	SMED30021678
Smed ID	SMED30021678
Length (bp)	692

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30021678 (SMED30021678) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30021678 (SMED30021678) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30021678 (SMED30021678) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30021678 (SMED30021678) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30021678

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30021678	h1SMcG0017806	dd_Smed_v4_4127_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30021678	h1SMcG0017806	dd_Smed_v4_4127_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30021678	h1SMcG0017806	dd_Smed_v4_4127_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30021678	h1SMcG0017806	dd_Smed_v4_4127_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Alignments

SMED30021678 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.000203:190240..195928 -	3370

Homology

[Close]

BLAST of SMED30021678 vs. Ensembl Human
Match: BCL7A (BAF chromatin remodeling complex subunit BCL7A [Source:HGNC Symbol;Acc:HGNC:1004])

HSP 1 Score: 78.9518 bits (193), Expect = 1.988e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Human
Match: BCL7A (BAF chromatin remodeling complex subunit BCL7A [Source:HGNC Symbol;Acc:HGNC:1004])

HSP 1 Score: 78.9518 bits (193), Expect = 3.305e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Human
Match: BCL7A (BAF chromatin remodeling complex subunit BCL7A [Source:HGNC Symbol;Acc:HGNC:1004])

HSP 1 Score: 78.9518 bits (193), Expect = 3.305e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Human
Match: BCL7B (BAF chromatin remodeling complex subunit BCL7B [Source:HGNC Symbol;Acc:HGNC:1005])

HSP 1 Score: 77.411 bits (189), Expect = 6.215e-17
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = -3

Query:  397 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFSNES 660
            M GRS+RAETRSRAK+D+K+V    E+VRKW KKW+++ DT+L +FKW P      +   K   ++ S  ++++ P  F S+  +N S
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVP------VTDSKEKEKSKSNSSAAREPNGFPSDASANSS 82

[Close]

BLAST of SMED30021678 vs. Ensembl Celegans
Match: bcl-7 (BCL7-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q09242])

HSP 1 Score: 60.4622 bits (145), Expect = 1.715e-11
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = -3

Query:  478 RSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKK 651
            RS RAETR+R+K++L++V  + E+VR+W KK + IKDT + ++KW P   Q  +   K
Sbjct:    6 RSHRAETRNRSKDELRKVINSLEKVRRWEKKLVLIKDTNIRIYKWVPVSAQNIMAPPK 63

[Close]

BLAST of SMED30021678 vs. Ensembl Fly
Match: BCL7-like (gene:FBgn0026149 transcript:FBtr0071358)

HSP 1 Score: 70.8626 bits (172), Expect = 3.167e-15
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = -3

Query:  511 FGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 657
              RS+RAETRSRAK+D+KRV +  ++VR W KKW++I DTT+ ++KW P
Sbjct:    1 MSRSVRAETRSRAKDDIKRVMQAVDKVRHWEKKWVTISDTTMKIYKWVP 49

[Close]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:57952])

HSP 1 Score: 78.1814 bits (191), Expect = 2.208e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:57952])

HSP 1 Score: 78.1814 bits (191), Expect = 2.219e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:57952])

HSP 1 Score: 78.1814 bits (191), Expect = 2.262e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:57952])

HSP 1 Score: 78.1814 bits (191), Expect = 2.262e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Match: bcl7bb (BAF chromatin remodeling complex subunit BCL7B b [Source:NCBI gene;Acc:81595])

HSP 1 Score: 77.0258 bits (188), Expect = 7.061e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    ERVR+W KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIERVRRWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Xenopus
Match: bcl7a (BCL7A, BAF complex component [Source:NCBI gene;Acc:448642])

HSP 1 Score: 78.5666 bits (192), Expect = 2.810e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Xenopus
Match: bcl7a (BCL7A, BAF complex component [Source:NCBI gene;Acc:448642])

HSP 1 Score: 78.1814 bits (191), Expect = 4.852e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Xenopus
Match: nrp2 (neuropilin 2 [Source:Xenbase;Acc:XB-GENE-485735])

HSP 1 Score: 74.3294 bits (181), Expect = 8.227e-16
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    E VR+W KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIENVRRWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Xenopus
Match: mastl (microtubule associated serine/threonine kinase like [Source:Xenbase;Acc:XB-GENE-964548])

HSP 1 Score: 67.0106 bits (162), Expect = 4.752e-13
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M  R+ RAETRSRA++D+KRV    E VR+W K+W+++ DT+L ++KW P
Sbjct:    1 MANRTGRAETRSRARDDIKRVMAVIEHVRRWEKRWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Mouse
Match: Bcl7a (B cell CLL/lymphoma 7A [Source:MGI Symbol;Acc:MGI:1924295])

HSP 1 Score: 78.9518 bits (193), Expect = 1.482e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Mouse
Match: Bcl7b (B cell CLL/lymphoma 7B [Source:MGI Symbol;Acc:MGI:1332238])

HSP 1 Score: 75.0998 bits (183), Expect = 1.019e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    E+VRKW KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Mouse
Match: Bcl7b (B cell CLL/lymphoma 7B [Source:MGI Symbol;Acc:MGI:1332238])

HSP 1 Score: 76.2554 bits (186), Expect = 1.235e-16
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = -3

Query:  397 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFSNES 660
            M GRS+RAETRSRAK+D+K+V    E+VRKW KKW+++ DT+L +FKW P      +   K   ++ S   +++ P  F S+  +N S
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIEKVRKWEKKWVTVGDTSLRIFKWVP------VTDSKEKEKSKSNNTAAREPNGFPSDASANSS 82

[Close]

BLAST of SMED30021678 vs. Ensembl Mouse
Match: Bcl7c (B cell CLL/lymphoma 7C [Source:MGI Symbol;Acc:MGI:1332237])

HSP 1 Score: 73.1738 bits (178), Expect = 1.279e-16
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = -3

Query:  481 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP--GPYQEGLCGK 660
            M GR++RAETRSRAK+D+K+V  T E+VR+W K+W+++ DT+L +FKW P   P +E  C +
Sbjct:    1 MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEVHCKR 62

[Close]

BLAST of SMED30021678 vs. Ensembl Mouse
Match: Bcl7a (B cell CLL/lymphoma 7A [Source:MGI Symbol;Acc:MGI:1924295])

HSP 1 Score: 73.9442 bits (180), Expect = 1.360e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. UniProt/SwissProt
Match: sp|Q4VC05|BCL7A_HUMAN (B-cell CLL/lymphoma 7 protein family member A OS=Homo sapiens OX=9606 GN=BCL7A PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.547e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. UniProt/SwissProt
Match: sp|Q9CXE2|BCL7A_MOUSE (B-cell CLL/lymphoma 7 protein family member A OS=Mus musculus OX=10090 GN=Bcl7a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.037e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. UniProt/SwissProt
Match: sp|Q5XFY4|BCL7A_DANRE (B-cell CLL/lymphoma 7 protein family member A OS=Danio rerio OX=7955 GN=bcl7a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.675e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. UniProt/SwissProt
Match: sp|Q5XH61|BCL7A_XENLA (B-cell CLL/lymphoma 7 protein family member A OS=Xenopus laevis OX=8355 GN=bcl7a PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.890e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. UniProt/SwissProt
Match: sp|Q6DEV7|BCL7A_XENTR (B-cell CLL/lymphoma 7 protein family member A OS=Xenopus tropicalis OX=8364 GN=bcl7a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.570e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. TrEMBL
Match: G4VFZ5 (Putative bcl7a OS=Schistosoma mansoni OX=6183 GN=Smp_136770 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.099e-20
Identity = 67/178 (37.64%), Postives = 88/178 (49.44%), Query Frame = -3

Query:  193 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFS------NESKDSVDDN--MPPNIAEESN---------CSEVTDVTNITEGKQMDCNSARGCNGQLDE-----SITQDSESLINEDDSTNMSYP 660
            MF RSLR+ETRSRAKEDLKRV K+ E+VR W KKW+++KDT+++V+KW P    +    KK  F   S +N++    S     +S      + S  S+D N   P N+  E              VTD T   +   MD  +       LDE     S  Q S SL N  D T +S P
Sbjct:    1 MFSRSLRSETRSRAKEDLKRVHKSHEQVRSWEKKWVAVKDTSMLVYKWVPSLIIDMGHSKKGTFNRQSSINNASLISSGILSSYSCQQPEQDNSNGSIDTNSDKPTNLKNEDQGPTETLQDTILSVTDDTCSQKTSHMDIENTNSQEASLDESNDIMSSEQKSNSLDNSVDDTVISEP 178

[Close]

BLAST of SMED30021678 vs. TrEMBL
Match: A0A3Q0KMQ3 (Putative bcl7a OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.853e-19
Identity = 67/179 (37.43%), Postives = 88/179 (49.16%), Query Frame = -3

Query:  193 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFS------NESKDSVDDN--MPPNIAEESN---------CSEVTDVTNITEGKQMDCNSARGCNGQLDE------SITQDSESLINEDDSTNMSYP 660
            MF RSLR+ETRSRAKEDLKRV K+ E+VR W KKW+++KDT+++V+KW P    +    KK  F   S +N++    S     +S      + S  S+D N   P N+  E              VTD T   +   MD  +       LDE      S  Q S SL N  D T +S P
Sbjct:    1 MFSRSLRSETRSRAKEDLKRVHKSHEQVRSWEKKWVAVKDTSMLVYKWVPSLIIDMGHSKKGTFNRQSSINNASLISSGILSSYSCQQPEQDNSNGSIDTNSDKPTNLKNEDQGPTETLQDTILSVTDDTCSQKTSHMDIENTNSQEASLDESNDIIMSSEQKSNSLDNSVDDTVISEP 179

[Close]

BLAST of SMED30021678 vs. TrEMBL
Match: A0A095A222 (B-cell CLL/lymphoma 7 protein family member A OS=Schistosoma haematobium OX=6185 GN=MS3_09352 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.235e-19
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = -3

Query:  376 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVN-----SSKTPRSFTSEQ-FSNESKDSVDDN 660
            MF RSLR+ETRSRAKEDLKRV K+ E+VR W KKW+++KDT+++V+KW P    +    KK  F   S +N     SS    S++ +Q   + SK SVD N
Sbjct:    1 MFSRSLRSETRSRAKEDLKRVHKSHEQVRSWEKKWVAVKDTSMLVYKWVPSLIIDMGHSKKGTFNRQSSINNTSHISSGILSSYSCQQPEQDNSKGSVDTN 101

[Close]

BLAST of SMED30021678 vs. TrEMBL
Match: A0A430QPJ7 (Uncharacterized protein OS=Schistosoma bovis OX=6184 GN=DC041_0005626 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.235e-19
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = -3

Query:  376 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVN-----SSKTPRSFTSEQ-FSNESKDSVDDN 660
            MF RSLR+ETRSRAKEDLKRV K+ E+VR W KKW+++KDT+++V+KW P    +    KK  F   S +N     SS    S++ +Q   + SK SVD N
Sbjct:    1 MFSRSLRSETRSRAKEDLKRVHKSHEQVRSWEKKWVAVKDTSMLVYKWVPSLIIDMGHSKKGTFNRQSSINNTSHISSGILSSYSCQQPEQDNSKGSVDTN 101

[Close]

BLAST of SMED30021678 vs. TrEMBL
Match: A0A183KQL1 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS17346 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.235e-19
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = -3

Query:  376 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVN-----SSKTPRSFTSEQ-FSNESKDSVDDN 660
            MF RSLR+ETRSRAKEDLKRV K+ E+VR W KKW+++KDT+++V+KW P    +    KK  F   S +N     SS    S++ +Q   + SK SVD N
Sbjct:    1 MFSRSLRSETRSRAKEDLKRVHKSHEQVRSWEKKWVAVKDTSMLVYKWVPSLIIDMGHSKKGTFNRQSSINNTSHISSGILSSYSCQQPEQDNSKGSVDTN 101

[Close]

BLAST of SMED30021678 vs. Ensembl Cavefish
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:103047437])

HSP 1 Score: 78.1814 bits (191), Expect = 2.107e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Cavefish
Match: ENSAMXT00000019963.2 (pep primary_assembly:Astyanax_mexicanus-2.0:20:1713725:1715204:1 gene:ENSAMXG00000019385.2 transcript:ENSAMXT00000019963.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 72.7886 bits (177), Expect = 8.376e-17
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Cavefish
Match: bcl7ba (B-cell CLL/lymphoma 7 protein family member B-A-like [Source:NCBI gene;Acc:103038733])

HSP 1 Score: 76.6406 bits (187), Expect = 1.060e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    ERVR+W KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIERVRRWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Cavefish
Match: bcl7bb (B-cell CLL/lymphoma 7 protein family member B-B [Source:NCBI gene;Acc:103028073])

HSP 1 Score: 75.8702 bits (185), Expect = 1.213e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    ERVR+W KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIERVRRWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Cavefish
Match: bcl7ba (B-cell CLL/lymphoma 7 protein family member B-A-like [Source:NCBI gene;Acc:103038733])

HSP 1 Score: 74.3294 bits (181), Expect = 1.502e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+K+V    ERVR+W KKW+++ DT+L +FKW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKKVMAAIERVRRWEKKWVTVGDTSLRIFKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Nematostella
Match: EDO44614 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVB2])

HSP 1 Score: 63.929 bits (154), Expect = 4.501e-12
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = -3

Query:  508 MFGRS--LRAETRSRAKEDLKRVSKTTERVRKWTKKWISI--KDTTLMVFKWTPG 660
            M  RS  LR ETRSRAK+D+KRV  + ERVRKW KKW+++   + +L VFKW P 
Sbjct:    1 MMNRSGVLRLETRSRAKDDVKRVMLSVERVRKWEKKWVNVGGGNCSLKVFKWVPA 55

[Close]

BLAST of SMED30021678 vs. Ensembl Medaka
Match: bcl7bb (BAF chromatin remodeling complex subunit BCL7B [Source:NCBI gene;Acc:101174685])

HSP 1 Score: 77.7962 bits (190), Expect = 2.718e-17
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = -3

Query:  325 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFSNESKDSVDDNMPPNIAEESNCSEVTDV 660
            M GRS RAETRSRAK+D+K+V    E+VRKW KKW+++ DT+L +FKW P      +   K +FRT S     +  +    E  +N   D  DDN        SN S ++DV
Sbjct:    8 MSGRSGRAETRSRAKDDIKKVLAAIEKVRKWEKKWVTVGDTSLRIFKWVP------VTETKQIFRTKSTGGDVRGLKDVVLEN-TNSLLDFTDDN--------SNQSFMSDV 104

[Close]

BLAST of SMED30021678 vs. Ensembl Medaka
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:101156341])

HSP 1 Score: 77.411 bits (189), Expect = 3.344e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Ensembl Medaka
Match: bcl7a (BAF chromatin remodeling complex subunit BCL7A [Source:NCBI gene;Acc:101156341])

HSP 1 Score: 76.6406 bits (187), Expect = 5.494e-17
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = -3

Query:  511 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP 660
            M GRS+RAETRSRAK+D+KRV    E+VRKW KKW+++ DT+L ++KW P
Sbjct:    1 MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVP 50

[Close]

BLAST of SMED30021678 vs. Planmine SMEST
Match: SMESG000063653.1 (SMESG000063653.1)

HSP 1 Score: 348.206 bits (892), Expect = 1.094e-123
Identity = 174/192 (90.62%), Postives = 175/192 (91.15%), Query Frame = -3

Query:   85 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFSNESKDSVDDNMPPNIAEESNCSEVTDVTNITEGKQMDCNSARGCNGQLDESITQDSESLINEDDSTNMSYPNPGTWNTLSPNQPVEDDDTKSMSDFVNALNREDSNL 660
            MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNS                 +SVDDNMPPNIAEESNCSEVTDVTNITEGKQMDCNSARGCNGQLDESITQDSESLINEDDSTNMSYPNPGTWNTLSPNQPVEDDDTKSMSDFVNALNREDSNL
Sbjct:    1 MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTPGPYQEGLCGKKSVFRTTSVVNS-----------------NSVDDNMPPNIAEESNCSEVTDVTNITEGKQMDCNSARGCNGQLDESITQDSESLINEDDSTNMSYPNPGTWNTLSPNQPVEDDDTKSMSDFVNALNREDSNL 175

The following BLAST results are available for this feature:

BLAST of SMED30021678 vs. Ensembl Human
BLAST of SMED30021678 vs. Ensembl Celegans
BLAST of SMED30021678 vs. Ensembl Fly
BLAST of SMED30021678 vs. Ensembl Zebrafish
BLAST of SMED30021678 vs. Ensembl Xenopus
BLAST of SMED30021678 vs. Ensembl Mouse
BLAST of SMED30021678 vs. UniProt/SwissProt
BLAST of SMED30021678 vs. TrEMBL
BLAST of SMED30021678 vs. Ensembl Cavefish
BLAST of SMED30021678 vs. Ensembl Sea Lamprey
BLAST of SMED30021678 vs. Ensembl Yeast
BLAST of SMED30021678 vs. Ensembl Nematostella
BLAST of SMED30021678 vs. Ensembl Medaka
BLAST of SMED30021678 vs. Planmine SMEST

BLAST of SMED30021678 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
BCL7A	1.988e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
BCL7A	1.988e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
BCL7A	3.305e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
BCL7A	3.305e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
BCL7B	6.215e-17	43.18	BAF chromatin remodeling complex subunit BCL7B [So...	[more]

BLAST of SMED30021678 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
bcl-7	1.715e-11	44.83	BCL7-like protein [Source:UniProtKB/Swiss-Prot;Ac...	[more]

BLAST of SMED30021678 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
BCL7-like	3.167e-15	57.14	gene:FBgn0026149 transcript:FBtr0071358	[more]

BLAST of SMED30021678 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
bcl7a	2.208e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
bcl7a	2.219e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
bcl7a	2.262e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
bcl7a	2.262e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
bcl7bb	7.061e-17	62.00	BAF chromatin remodeling complex subunit BCL7B b [...	[more]

BLAST of SMED30021678 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
bcl7a	2.810e-17	62.00	BCL7A, BAF complex component [Source:NCBI gene;Acc...	[more]
bcl7a	4.852e-17	62.00	BCL7A, BAF complex component [Source:NCBI gene;Acc...	[more]
nrp2	8.227e-16	60.00	neuropilin 2 [Source:Xenbase;Acc:XB-GENE-485735]	[more]
mastl	4.752e-13	52.00	microtubule associated serine/threonine kinase lik...	[more]

BLAST of SMED30021678 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Bcl7a	1.482e-17	62.00	B cell CLL/lymphoma 7A [Source:MGI Symbol;Acc:MGI:...	[more]
Bcl7b	1.019e-16	62.00	B cell CLL/lymphoma 7B [Source:MGI Symbol;Acc:MGI:...	[more]
Bcl7b	1.235e-16	43.18	B cell CLL/lymphoma 7B [Source:MGI Symbol;Acc:MGI:...	[more]
Bcl7c	1.279e-16	51.61	B cell CLL/lymphoma 7C [Source:MGI Symbol;Acc:MGI:...	[more]
Bcl7a	1.360e-16	62.00	B cell CLL/lymphoma 7A [Source:MGI Symbol;Acc:MGI:...	[more]

BLAST of SMED30021678 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q4VC05\|BCL7A_HUMAN	9.547e-17	62.00	B-cell CLL/lymphoma 7 protein family member A OS=H...	[more]
sp\|Q9CXE2\|BCL7A_MOUSE	1.037e-16	62.00	B-cell CLL/lymphoma 7 protein family member A OS=M...	[more]
sp\|Q5XFY4\|BCL7A_DANRE	1.675e-16	62.00	B-cell CLL/lymphoma 7 protein family member A OS=D...	[more]
sp\|Q5XH61\|BCL7A_XENLA	1.890e-16	62.00	B-cell CLL/lymphoma 7 protein family member A OS=X...	[more]
sp\|Q6DEV7\|BCL7A_XENTR	2.570e-16	62.00	B-cell CLL/lymphoma 7 protein family member A OS=X...	[more]

BLAST of SMED30021678 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
G4VFZ5	6.099e-20	37.64	Putative bcl7a OS=Schistosoma mansoni OX=6183 GN=S...	[more]
A0A3Q0KMQ3	1.853e-19	37.43	Putative bcl7a OS=Schistosoma mansoni OX=6183 PE=4...	[more]
A0A095A222	5.235e-19	48.51	B-cell CLL/lymphoma 7 protein family member A OS=S...	[more]
A0A430QPJ7	5.235e-19	48.51	Uncharacterized protein OS=Schistosoma bovis OX=61...	[more]
A0A183KQL1	5.235e-19	48.51	Uncharacterized protein OS=Schistosoma curassoni O...	[more]

BLAST of SMED30021678 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
bcl7a	2.107e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
ENSAMXT00000019963.2	8.376e-17	64.00	pep primary_assembly:Astyanax_mexicanus-2.0:20:171...	[more]
bcl7ba	1.060e-16	62.00	B-cell CLL/lymphoma 7 protein family member B-A-li...	[more]
bcl7bb	1.213e-16	62.00	B-cell CLL/lymphoma 7 protein family member B-B [S...	[more]
bcl7ba	1.502e-16	62.00	B-cell CLL/lymphoma 7 protein family member B-A-li...	[more]

BLAST of SMED30021678 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30021678 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30021678 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO44614	4.501e-12	56.36	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30021678 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3


Match Name	E-value	Identity	Description
bcl7bb	2.718e-17	41.96	BAF chromatin remodeling complex subunit BCL7B [So...	[more]
bcl7a	3.344e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]
bcl7a	5.494e-17	62.00	BAF chromatin remodeling complex subunit BCL7A [So...	[more]

BLAST of SMED30021678 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000063653.1	1.094e-123	90.63	SMESG000063653.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30021678 ID=SMED30021678|Name=SMED30021678|organism=Schmidtea mediterranea sexual|type=transcript|length=692bp
AATATTATTTCATTAAAACAAAAATTTATTCACAAGAAAATTTATTCGAC
AAAATGAGTTCCATTAAAAATAAAAAGTTAATTACAAATTTGAATCTTCA
CGATTCAAAGCATTGACAAAGTCACTCATAGATTTTGTGTCATCATCTTC
AACTGGTTGATTTGGAGAAAGAGTATTCCAAGTTCCAGGGTTTGGATAAG
ACATATTAGTAGAATCATCTTCGTTGATTAAAGATTCAGAGTCCTGGGTA
ATAGACTCGTCCAATTGCCCATTACAACCTCGAGCTGAATTACAATCCAT
TTGTTTGCCTTCAGTAATGTTTGTAACATCTGTTACTTCCGAACAATTAC
TTTCTTCAGCAATATTTGGAGGCATATTGTCATCGACTGAATCTTTACTT
TCGTTAGAAAATTGCTCTGATGTAAATGATCGAGGAGTTTTACTTGAATT
AACTACACTAGTAGTTCGGAAAACACTTTTCTTTCCACACAAACCTTCTT
GATATGGACCAGGAGTCCATTTAAATACCATTAATGTAGTATCCTTAATA
GATATCCATTTTTTTGTCCATTTTCGAACCCTTTCAGTAGTTTTTGAGAC
TCTTTTCAAGTCTTCTTTTGCTCGACTTCTTGTTTCTGCTCTTAATGACC
TCCCAAACATTGCGCTTTGTAAATATTATATAAACAAGCCCG

protein sequence of SMED30021678-orf-1

>SMED30021678-orf-1 ID=SMED30021678-orf-1|Name=SMED30021678-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=193bp
MFGRSLRAETRSRAKEDLKRVSKTTERVRKWTKKWISIKDTTLMVFKWTP
GPYQEGLCGKKSVFRTTSVVNSSKTPRSFTSEQFSNESKDSVDDNMPPNI
AEESNCSEVTDVTNITEGKQMDCNSARGCNGQLDESITQDSESLINEDDS
TNMSYPNPGTWNTLSPNQPVEDDDTKSMSDFVNALNREDSNL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000429	neoblast

Vocabulary: **INTERPRO**
Term	Definition
IPR006804	BCL7

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006804	BCL7	PFAM	PF04714	BCL_N	coord: 4..50 e-value: 4.6E-21 score: 74.6
IPR006804	BCL7	PANTHER	PTHR12767	BCL7 RELATED	coord: 1..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..192
None	No IPR available	PANTHER	PTHR12767:SF9	BCL7-LIKE	coord: 1..177

Main menu

SMED30021678

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

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