39S ribosomal protein L23
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021657 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Match: MRPL23 (mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]) HSP 1 Score: 65.4698 bits (158), Expect = 9.075e-13 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R+VVYP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL IY+V V+T++ + +NK + ++ PD KVAY++L G F FP++F E P+ Sbjct: 3 RNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHG------SNKRRDHRNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDESPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Match: MRPL23 (mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]) HSP 1 Score: 65.4698 bits (158), Expect = 9.075e-13 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R+VVYP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL IY+V V+T++ + +NK + ++ PD KVAY++L G F FP++F E P+ Sbjct: 3 RNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHG------SNKRRDHRNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDESPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Match: MRPL23 (mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]) HSP 1 Score: 65.4698 bits (158), Expect = 9.075e-13 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R+VVYP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL IY+V V+T++ + +NK + ++ PD KVAY++L G F FP++F E P+ Sbjct: 3 RNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHG------SNKRRDHRNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDESPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Match: MRPL23 (mitochondrial ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10322]) HSP 1 Score: 65.4698 bits (158), Expect = 9.075e-13 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R+VVYP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL IY+V V+T++ + +NK + ++ PD KVAY++L G F FP++F E P+ Sbjct: 3 RNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHG------SNKRRDHRNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDESPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Match: AC004556.3 (39S ribosomal protein L23, mitochondrial [Source:NCBI gene;Acc:107987373]) HSP 1 Score: 65.4698 bits (158), Expect = 1.015e-12 Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R+VVYP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL IY+V V+T++ + +NK + ++ PD KVAY++L G F FP++F E P+ Sbjct: 3 RNVVYPLYRLGGPQLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHG------SNKRRDHRNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDESPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Celegans
Match: mrpl-23 (Probable 39S ribosomal protein L23, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9GYS9]) HSP 1 Score: 58.5362 bits (140), Expect = 1.347e-10 Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2 Query: 131 GDPKLRIPLVPYWMKLV----YLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFE 475 G+P+ R+ L +WM +V P VKF++ P+M+ HD++EYL KIYD+ V+T++ D +T N + + K + + +K+AY+ + G +F +P +FE Sbjct: 12 GNPQRRVFLPDFWMAVVESPSVGRNRLPRNCVKFEVDPRMSRHDIREYLTKIYDLPVRDVRTEVQMGD---ITWNSKLDHQYKKAMWK-------DEDKKIAYVFMSKGFEFSYPQMFE 120
BLAST of 39S ribosomal protein L23 vs. Ensembl Fly
Match: mRpL23 (gene:FBgn0035335 transcript:FBtr0289966) HSP 1 Score: 65.4698 bits (158), Expect = 5.374e-13 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNR 541 YP Y G+P+LR+ L +WMKL+ PP +V F + +MT +DV+ YL KIY + + V+T++ + + T IT+K K+AY+ L + F FP+ F E + + +E S + KAG R Sbjct: 6 YPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKK---------------DDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSL-DESKAGFR 132
BLAST of 39S ribosomal protein L23 vs. Ensembl Fly
Match: mRpL23 (gene:FBgn0035335 transcript:FBtr0072900) HSP 1 Score: 65.4698 bits (158), Expect = 5.374e-13 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNR 541 YP Y G+P+LR+ L +WMKL+ PP +V F + +MT +DV+ YL KIY + + V+T++ + + T IT+K K+AY+ L + F FP+ F E + + +E S + KAG R Sbjct: 6 YPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKK---------------DDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSL-DESKAGFR 132
BLAST of 39S ribosomal protein L23 vs. Ensembl Fly
Match: mRpL23 (gene:FBgn0035335 transcript:FBtr0331416) HSP 1 Score: 65.4698 bits (158), Expect = 5.374e-13 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNR 541 YP Y G+P+LR+ L +WMKL+ PP +V F + +MT +DV+ YL KIY + + V+T++ + + T IT+K K+AY+ L + F FP+ F E + + +E S + KAG R Sbjct: 6 YPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKK---------------DDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSL-DESKAGFR 132
BLAST of 39S ribosomal protein L23 vs. Ensembl Fly
Match: mRpL23 (gene:FBgn0035335 transcript:FBtr0331415) HSP 1 Score: 65.4698 bits (158), Expect = 5.374e-13 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNR 541 YP Y G+P+LR+ L +WMKL+ PP +V F + +MT +DV+ YL KIY + + V+T++ + + T IT+K K+AY+ L + F FP+ F E + + +E S + KAG R Sbjct: 6 YPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKYDVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKK---------------DDVKLAYVTLPREESFVFPDFFSEKAEKQAKEEKSL-DESKAGFR 132
BLAST of 39S ribosomal protein L23 vs. Ensembl Zebrafish
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:415142]) HSP 1 Score: 67.781 bits (164), Expect = 1.021e-13 Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNK---MITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE 478 + ++YP Y LG+P+LRI + M LV PP+ V+F+I MT DV+ YL KIY V V+T++ Y +NK + ++V + PD KVAY++L FQFP+IF E Sbjct: 3 KRIIYPLYQLGNPQLRIFRPTFNMTLVRPGKEQPPDTVQFRISMAMTKCDVRNYLEKIYSVPVSAVRTRIQY------CSNKKRNHLNQRVKR--------PD----YKVAYVQLAQQQTFQFPDIFPE 113
BLAST of 39S ribosomal protein L23 vs. Ensembl Zebrafish
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:415142]) HSP 1 Score: 67.781 bits (164), Expect = 1.021e-13 Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNK---MITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE 478 + ++YP Y LG+P+LRI + M LV PP+ V+F+I MT DV+ YL KIY V V+T++ Y +NK + ++V + PD KVAY++L FQFP+IF E Sbjct: 3 KRIIYPLYQLGNPQLRIFRPTFNMTLVRPGKEQPPDTVQFRISMAMTKCDVRNYLEKIYSVPVSAVRTRIQY------CSNKKRNHLNQRVKR--------PD----YKVAYVQLAQQQTFQFPDIFPE 113
BLAST of 39S ribosomal protein L23 vs. Ensembl Xenopus
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:496986]) HSP 1 Score: 72.7886 bits (177), Expect = 1.639e-15 Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 R V+YP Y LG+P+LR+ + M LV PP+ +F+I +MT DV+ YL IY V TV+T++ Y + ++V + PD KVAY++L G FQFP++F + P+ Sbjct: 3 RKVIYPLYQLGNPQLRVFRTNFQMTLVRPGREQPPDTAQFRIPLEMTKADVQNYLQSIYSVPVATVRTRIQYGSNR---KRNHLNQRVKR--------PD----YKVAYVQLGQGQTFQFPDLFPQKDKTPE 119
BLAST of 39S ribosomal protein L23 vs. Ensembl Xenopus
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:496986]) HSP 1 Score: 68.9366 bits (167), Expect = 4.845e-14 Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPD 496 YP Y LG+P+LR+ + M LV PP+ +F+I +MT DV+ YL IY V TV+T++ Y + ++V + PD KVAY++L G FQFP++F + P+ Sbjct: 13 YPLYQLGNPQLRVFRTNFQMTLVRPGREQPPDTAQFRIPLEMTKADVQNYLQSIYSVPVATVRTRIQYGSNR---KRNHLNQRVKR--------PD----YKVAYVQLGQGQTFQFPDLFPQKDKTPE 125
BLAST of 39S ribosomal protein L23 vs. Ensembl Mouse
Match: Mrpl23 (mitochondrial ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1196612]) HSP 1 Score: 68.1662 bits (165), Expect = 6.549e-14 Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE---NSPEPDYDELSK 514 R+V+YP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL +IY+V V+T++ + +N+ K ++ PD KVAY++L G F FP++F E SPEP +EL + Sbjct: 3 RNVLYPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHG------SNRRRDHKNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDPRSPEPLEEELPQ 128
BLAST of 39S ribosomal protein L23 vs. Ensembl Mouse
Match: Mrpl23 (mitochondrial ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1196612]) HSP 1 Score: 64.6994 bits (156), Expect = 1.918e-12 Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 2 Query: 107 VVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE---NSPEPDYDEL 508 + YP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL +IY+V V+T++ + +N+ K ++ PD KVAY++L G F FP++F E SPEP +EL Sbjct: 31 IRYPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHG------SNRRRDHKNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDPRSPEPLEEEL 152
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|O35972|RM23_MOUSE (39S ribosomal protein L23, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl23 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.581e-13 Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE---NSPEPDYDELSK 514 R+V+YP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL +IY+V V+T++ + +N+ K ++ PD KVAY++L G F FP++F E SPEP +EL + Sbjct: 3 RNVLYPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHG------SNRRRDHKNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKDPRSPEPLEEELPQ 128
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|Q63750|RM23_RAT (39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl23 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.292e-13 Identity = 49/156 (31.41%), Postives = 81/156 (51.92%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIF---EENSPEPDYDEL---SKGSKPKAGNREGW 550 R+V+YP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL +IY+V V+T++ + +N+ K ++ PD KVAY++L G F FP++F E SP+P +EL + S P+ W Sbjct: 3 RNVLYPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHG------SNRRRDHKNVRIK-----KPD----YKVAYVQLAHGQTFTFPDLFPEKEPTSPDPLEEELPQQRQSSDPRCPGIPSW 143
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|Q6IQS9|RM23_DANRE (39S ribosomal protein L23, mitochondrial OS=Danio rerio OX=7955 GN=mrpl23 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.705e-13 Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNK---MITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEE 478 + ++YP Y LG+P+LRI + M LV PP+ V+F+I MT DV+ YL KIY V V+T++ Y +NK + ++V + PD KVAY++L FQFP+IF E Sbjct: 3 KRIIYPLYQLGNPQLRIFRPTFNMTLVRPGKEQPPDTVQFRISMAMTKCDVRNYLEKIYSVPVSAVRTRIQY------CSNKKRNHLNQRVKR--------PD----YKVAYVQLAQQQTFQFPDIFPE 113
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|B5FWC0|RM23_OTOGA (39S ribosomal protein L23, mitochondrial OS=Otolemur garnettii OX=30611 GN=MRPL23 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 3.083e-12 Identity = 48/163 (29.45%), Postives = 76/163 (46.63%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPE---PDYDELS----------KGSKPKAGNREGW 550 R+V+YP Y LG P+LR+ ++++LV P + V+F+I +MT D++ YL +IY+V V+T++ + + +K PD KVAY++L G F FP++F E P DE +GS P+ G W Sbjct: 3 RNVLYPLYQLGGPQLRVFRTNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQHGSHRKRDHRNVRIKK-----------PD----YKVAYVQLAHGQTFTFPDLFPEKDPRLEGSSVDEAQSTFMADEQQRQGSDPQRGGVPNW 150
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Match: sp|Q5TUE9|RM23_ANOGA (Probable 39S ribosomal protein L23, mitochondrial OS=Anopheles gambiae OX=7165 GN=mRpL23 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 3.625e-12 Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 2 Query: 113 YPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDE 505 YP Y G+P+LR+ L +W+KLV PP +V+F +MT HDVK YL KIY+V + V+T++ T ++ + K E K AY+ L +F FP+IF ++ + D+ Sbjct: 6 YPIYQRGNPQLRVFLPNFWLKLVRPANEQPPNVVQFACSMEMTRHDVKNYLEKIYNVPVVNVRTRIALGG----TKRDLVLGYITK-----------EEDTKYAYVTLPRTKQFTFPDIFPTDAKQKIEDD 121
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Match: A0A0X3PCQ2 (39S ribosomal protein L23 OS=Schistocephalus solidus OX=70667 GN=RM23 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.600e-43 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGS 520 M+P+IY NPI I KT +Y PLW RHVVYPK+ GDP+LR+ L P+WMK++Y P L FK+HPQMT DV++YL KIY V +V+ KM+Y+DL PL + ++ +L +PERYEK+AY+ L PG F+FP+IF++ SP + D L G+ Sbjct: 1 MRPVIYFNPIAIPKTKHYVPLWNRHVVYPKFTPGDPQLRMFLPPFWMKMIYPGKDCPKCLAVFKVHPQMTQFDVRQYLEKIYKVPVASVRLKMLYHDLPPLDVAE-DPKRAAGATLPHSLPLEPERYEKLAYVHLPPGHDFEFPDIFKDKSPSEELDRLLSGT 162
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Match: A0A183TS24 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS19272 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.197e-42 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGS 520 M+P+IY NPI I KT +Y PLW RHVVYPK+ GDP+LR+ L P+WMK++Y P L FK+HPQMT DV++YL KIY V +V+ KM+Y+DL PL + ++ +L +PERYEK+AY+ L PG F+FP+IF++ SP + D L G+ Sbjct: 1 MRPVIYFNPIAIPKTKHYVPLWNRHVVYPKFTPGDPQLRMFLPPFWMKMIYPGKDCPKCLAVFKVHPQMTQFDVRQYLEKIYKVPVASVRLKMLYHDLPPLDVAE-DPKRAAGATLPHSLPLEPERYEKLAYVHLPPGHDFEFPDIFKDKSPSEELDRLLSGT 162
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Match: A0A087VXE1 (Mitochondrial ribosomal protein l23 OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000070700 PE=4 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 1.859e-41 Identity = 77/150 (51.33%), Postives = 104/150 (69.33%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEEN 481 M+P+IY NPI I KT +Y PLW RHVVYPK+ GDP+LR+ L P+WMK++Y P LV FK+HPQMT +DVK+YL KIY V + V+ KM+Y+DL PL T + + + + +PERYEKVAY+ L PG +F+FP+IF++ Sbjct: 14 MRPVIYFNPIAIPKTKHYVPLWNRHVVYPKFTPGDPQLRMFLPPFWMKMLYPGEKCPKRLVVFKVHPQMTKYDVKQYLEKIYKVPVIGVQLKMLYHDLHPLDTAE-DPRRAVGAAFPHLLPREPERYEKVAYVHLAPGYEFEFPDIFKDG 162
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Match: A0A5J4ND27 (Large subunit ribosomal protein L23 OS=Paragonimus westermani OX=34504 GN=DEA37_0012063 PE=4 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 3.927e-41 Identity = 75/153 (49.02%), Postives = 108/153 (70.59%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLR-FQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSP 487 M+P+I++ PI + KT +Y PLW+R+V YPK+ GDP++R L P+WMK++Y + PP+ V FK+HPQMT DV++YL KIY+V + V+ KM+Y+DLEP+ +EKV++ S F P PERYEK+AY+RL P + F+FPN+F P Sbjct: 37 MRPVIFIRPICLPKTPHYVPLWQRYVEYPKFTPGDPQIRCFLPPFWMKMLYPGPYNPPDHVIFKVHPQMTTMDVQQYLEKIYNVPVLHVRVKMVYHDLEPIDEP---SEKVIRRSAEPFMFPPKPERYEKLAYVRLAPNNSFEFPNLFANKRP 186
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Match: A0A183QUK7 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 4.920e-41 Identity = 76/167 (45.51%), Postives = 109/167 (65.27%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKA 532 ++P+I++ PI + KT++Y+PLW+R V YPK GDP + L P+WMK++Y PP V FK+HPQMT DV++YL KIY+V V+ KM+Y+DLEP+ + + L S +F P PERYEKVAY+RL PG+ F FP++F++ P D L+ G K+ Sbjct: 4 VRPVIFIRPICLPKTTHYFPLWRRQVEYPKVFPGDPPVPCFLPPFWMKMMYPGPKNPPNHVVFKVHPQMTKRDVQQYLEKIYNVPVADVRVKMVYHDLEPIDEPAFRSAQRLADSTQF--PPKPERYEKVAYVRLVPGEVFVFPDLFKDKRPSDAVDILNGGDAAKS 168
BLAST of 39S ribosomal protein L23 vs. Ensembl Cavefish
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:415142]) HSP 1 Score: 57.3806 bits (137), Expect = 2.021e-10 Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 2 Query: 98 KRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDL 325 R ++YP Y LG+P+LRI M LV P + V+F+I QMT DV+ YL KIY V V+T++ Y +L Sbjct: 2 SRRLIYPIYQLGNPQLRIFRPTVSMTLVRPGKEQPSDTVQFRIPMQMTKFDVRNYLEKIYSVPVSGVRTRIQYCEL 77
BLAST of 39S ribosomal protein L23 vs. Ensembl Cavefish
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:415142]) HSP 1 Score: 56.6102 bits (135), Expect = 1.324e-9 Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIY 316 R ++YP Y LG+P+LRI M LV P + V+F+I QMT DV+ YL KIY V V+T++ Y Sbjct: 3 RRLIYPIYQLGNPQLRIFRPTVSMTLVRPGKEQPSDTVQFRIPMQMTKFDVRNYLEKIYSVPVSGVRTRIQY 74
BLAST of 39S ribosomal protein L23 vs. Ensembl Sea Lamprey
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:415142]) HSP 1 Score: 70.8626 bits (172), Expect = 1.371e-15 Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 101 RHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIF-----EENSPEP---------DYDELSKGSKPKAGNREGW 550 R V+ P Y G+P+LR+ ++MK+V P + V+F++ +MT DVK YL KIY+V V+T++ Y +NK + L L+ PD KVAY++L G F FPN+F +E PE + +E K + GN W Sbjct: 3 RRVLMPIYQYGNPQLRVFRTNFFMKMVRPGKELPEDTVQFRVSMEMTKFDVKNYLQKIYNVSVAEVRTRIQYG------SNK--KKNHLNQHLK---KPDY----KVAYVQLAQGQTFTFPNLFPEKETKEEDPESLEAFERMFRENEEQRKKGDTRRGNMNEW 151
BLAST of 39S ribosomal protein L23 vs. Ensembl Medaka
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:101158163]) HSP 1 Score: 65.0846 bits (157), Expect = 8.333e-13 Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 2 Query: 104 HVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEP 493 +++ P Y LG+P+LRI +++ LV PP+ +F++ +MT +DVK YL KIY+V V+T++ + + + +KV K PD KVAY++L G F FP++F E P Sbjct: 4 NIIVPIYQLGNPQLRIFRPNWFLTLVRPGKEQPPDTAQFRVPMEMTKYDVKNYLEKIYNVPVGVVRTRIQFGSNK---KRNHLNQKVKK--------PD----YKVAYVQLAQGQTFTFPDVFPEKDQTP 118
BLAST of 39S ribosomal protein L23 vs. Ensembl Medaka
Match: mrpl23 (mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:101158163]) HSP 1 Score: 63.5438 bits (153), Expect = 4.495e-12 Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 2 Query: 116 PKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEP 493 P Y LG+P+LRI +++ LV PP+ +F++ +MT +DVK YL KIY+V V+T++ + + + +KV K PD KVAY++L G F FP++F E P Sbjct: 31 PIYQLGNPQLRIFRPNWFLTLVRPGKEQPPDTAQFRVPMEMTKYDVKNYLEKIYNVPVGVVRTRIQFGSNK---KRNHLNQKVKK--------PD----YKVAYVQLAQGQTFTFPDVFPEKDQTP 141
BLAST of 39S ribosomal protein L23 vs. Planmine SMEST
Match: SMESG000037729.1 (SMESG000037729.1) HSP 1 Score: 350.903 bits (899), Expect = 2.591e-124 Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 2 Query: 32 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNREGW 550 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGN+EGW Sbjct: 1 MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVYLDGHYPPELVKFKIHPQMTDHDVKEYLIKIYDVKPMTVKTKMIYNDLEPLTTNKMITEKVLKTSLRFQCAPDPERYEKVAYIRLFPGDKFQFPNIFEENSPEPDYDELSKGSKPKAGNQEGW 173 The following BLAST results are available for this feature:
BLAST of 39S ribosomal protein L23 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of 39S ribosomal protein L23 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of 39S ribosomal protein L23 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of 39S ribosomal protein L23 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 39S ribosomal protein L23 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 39S ribosomal protein L23 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of 39S ribosomal protein L23 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 39S ribosomal protein L23 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 39S ribosomal protein L23 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of 39S ribosomal protein L23 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 39S ribosomal protein L23 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of 39S ribosomal protein L23 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of 39S ribosomal protein L23 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of 39S ribosomal protein L23 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021657 ID=SMED30021657|Name=39S ribosomal protein L23|organism=Schmidtea mediterranea sexual|type=transcript|length=758bpback to top protein sequence of SMED30021657-orf-1 >SMED30021657-orf-1 ID=SMED30021657-orf-1|Name=SMED30021657-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp MKPLIYVNPIRILKTSYYYPLWKRHVVYPKYNLGDPKLRIPLVPYWMKLVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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