Exosome complex component RRP45

Overview


Name	Exosome complex component RRP45
Smed ID	SMED30021651
Length (bp)	1143

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Exosome complex component RRP45 (SMED30021651) t-SNE clustered cells

Violin plots show distribution of expression levels for Exosome complex component RRP45 (SMED30021651) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Exosome complex component RRP45 (SMED30021651) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Exosome complex component RRP45 (SMED30021651) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30021651

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 1

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
X1 cell	SMED30021651	SMESG000033994.1 SMESG000033981.1	SmedASXL_010774	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015

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Homology

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BLAST of Exosome complex component RRP45 vs. Ensembl Human
Match: EXOSC9 (exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137])

HSP 1 Score: 125.946 bits (315), Expect = 2.575e-33
Identity = 71/234 (30.34%), Postives = 137/234 (58.55%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSEL 775
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++   +++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      GSE+
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGSEM 241

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BLAST of Exosome complex component RRP45 vs. Ensembl Human
Match: EXOSC9 (exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137])

HSP 1 Score: 122.094 bits (305), Expect = 1.775e-30
Identity = 77/261 (29.50%), Postives = 144/261 (55.17%), Query Frame = 2

Query:   98 QRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            QRLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++   +++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G  +        RC ++   KV  +  LI + ++  Q
Sbjct:    6 QRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV-LRCSKIAGVKVAEITELILKALENDQ 257

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BLAST of Exosome complex component RRP45 vs. Ensembl Human
Match: EXOSC9 (exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137])

HSP 1 Score: 122.479 bits (306), Expect = 2.263e-30
Identity = 76/267 (28.46%), Postives = 148/267 (55.43%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++   +++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G  +        RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV-LRCSKIAGVKVAEITELILKALENDQ 273

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BLAST of Exosome complex component RRP45 vs. Ensembl Human
Match: EXOSC9 (exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137])

HSP 1 Score: 122.094 bits (305), Expect = 2.437e-30
Identity = 76/267 (28.46%), Postives = 148/267 (55.43%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++   +++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G  +        RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV-LRCSKIAGVKVAEITELILKALENDQ 273

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BLAST of Exosome complex component RRP45 vs. Ensembl Human
Match: EXOSC8 (exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035])

HSP 1 Score: 88.5817 bits (218), Expect = 2.509e-19
Identity = 69/278 (24.82%), Postives = 125/278 (44.96%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            FK ++     R+ LK++ R DGR + E+R  ++ +  IS    A  + L+ LG T V+C +  +   P  + P +G +  +V+   + ++  +     E+A      I   +  ++ +  + LCI  G+ V+ +  ++     DGN+LD    + L  LK  + P+VTI E   +    NLK K    L I+T P   +  V  +   LI+D    EE      + + +    +L C H  G    T     + C     ++   +  L+ +VIK+ +
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSIST---ADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETAL-AEVNLKKKS--YLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQD-CMSRAVTRHKEVKKLMDEVIKSMK 274

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BLAST of Exosome complex component RRP45 vs. Ensembl Celegans
Match: exos-9 (EXOSome (Multiexonuclease complex) component [Source:UniProtKB/TrEMBL;Acc:Q8MNS7])

HSP 1 Score: 125.946 bits (315), Expect = 3.227e-32
Identity = 78/270 (28.89%), Postives = 146/270 (54.07%), Query Frame = 2

Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            +I + LK  +R D R++ E+R++ + +           T + ++G T+V+  +S ++ EP +  P +G+I +DV+ S + N +N+      K ++L  ++E  +  ++ +D+++LCI AG+ ++ I ++++   +DG+LLD   L+A+  L+ F+RP+VT+     +   E   +K PVPL I  MP   TIG+L +   +++D    E   LD  IVV      ++   H   + L  +     RC +L  ++  AL  ++S VIK  Q
Sbjct:   13 VILEALKIGKRFDFRSLEEFRDVKLVV------GAEVGTAICTIGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEY--EKAPVPLNIYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQ-STNLILSTKQIERCVKLAMARAEALTAVVSDVIKQDQ 273

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Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            +I + LK  +R D R++ E+R++ + +           T + ++G T+V+  +S ++ EP +  P +G+I +DV+ S + N +N+      K ++L  ++E  +  ++ +D+++LCI AG+ ++ I ++++   +DG+LLD   L+A+  L+ F+RP+VT+     +   E   +K PVPL I  MP   TIG+L +   +++D    E   LD  IVV      ++   H   + L  +     RC +L  ++  AL  ++S VIK  Q
Sbjct:   13 VILEALKIGKRFDFRSLEEFRDVKLVV------GAEVGTAICTIGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEY--EKAPVPLNIYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQ-STNLILSTKQIERCVKLAMARAEALTAVVSDVIKQDQ 273

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BLAST of Exosome complex component RRP45 vs. Ensembl Fly
Match: Rrp45 (gene:FBgn0030789 transcript:FBtr0344090)

HSP 1 Score: 108.227 bits (269), Expect = 6.849e-26
Identity = 77/269 (28.62%), Postives = 134/269 (49.81%), Query Frame = 2

Query:   68 NMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKA 868
            + ++  +K +QRLDGR  +E R++ +   K         +  +S+G T+VL +++C++  P  + P+ G I L+V    +           +++LKL  ++E+    ++++DL+SLC+   + V+CI + +     DGNL D   ++ L  L  F+RPDV   + G + + +  K+++ +PL     P  VT  V   S Q ILD   LEE+  DS IV+      +L C    G    TN     +C    ++  V    L++ V KA
Sbjct:   18 SFVQLAVKQNQRLDGRRSNESRDVELTFGK------DWGSVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWY-KDGELRIFKK-KEREFIPLLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQEL-CSLTAGGTAPTNARIIMQC---ARNAAVRCKSLLNFVRKA 274

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BLAST of Exosome complex component RRP45 vs. Ensembl Fly
Match: Rrp45 (gene:FBgn0030789 transcript:FBtr0074355)

HSP 1 Score: 108.227 bits (269), Expect = 6.849e-26
Identity = 77/269 (28.62%), Postives = 134/269 (49.81%), Query Frame = 2

Query:   68 NMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKA 868
            + ++  +K +QRLDGR  +E R++ +   K         +  +S+G T+VL +++C++  P  + P+ G I L+V    +           +++LKL  ++E+    ++++DL+SLC+   + V+CI + +     DGNL D   ++ L  L  F+RPDV   + G + + +  K+++ +PL     P  VT  V   S Q ILD   LEE+  DS IV+      +L C    G    TN     +C    ++  V    L++ V KA
Sbjct:   18 SFVQLAVKQNQRLDGRRSNESRDVELTFGK------DWGSVAVSMGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPDVWY-KDGELRIFKK-KEREFIPLLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQEL-CSLTAGGTAPTNARIIMQC---ARNAAVRCKSLLNFVRKA 274

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BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:450057])

HSP 1 Score: 126.716 bits (317), Expect = 1.826e-32
Identity = 77/264 (29.17%), Postives = 146/264 (55.30%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIK 865
            K +K+ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK + P+ G++  ++  S + + + +    +E  + L   +E+CL  +K +D +SLC+ +GE+V+ I +++     DGNL+D   ++A+  L  F+RPDV I +  ++TV    +++DP+PL I  MP  V+    ++ + L++D  + EE   D  +V+ +    ++      G  +        RC ++   KV  +  LI++ ++
Sbjct:   16 KAIKEKKRLDGRQTYDYRNIKISF------GTDYGCCVVELGKTRVLSQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-QGRDVTVF-GPEERDPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGIMLLKEQV-LRCSKIASVKVSEITELINKALE 270

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BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:450057])

HSP 1 Score: 87.0409 bits (214), Expect = 2.949e-19
Identity = 67/264 (25.38%), Postives = 122/264 (46.21%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIK 865
            K +K+ +RLDGR  ++YRNI I           +  C++ LGKT+                                         +E  + L   +E+CL  +K +D +SLC+ +GE+V+ I +++     DGNL+D   ++A+  L  F+RPDV I +  ++TV    +++DP+PL I  MP  V+    ++ + L++D  + EE   D  +V+ +    ++      G  +        RC ++   KV  +  LI++ ++
Sbjct:   16 KAIKEKKRLDGRQTYDYRNIKISF------GTDYGCCVVELGKTR----------------------------------------QSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-QGRDVTVF-GPEERDPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGIMLLKEQV-LRCSKIASVKVSEITELINKALE 230

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BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
Match: exosc7 (exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-050417-47])

HSP 1 Score: 74.7146 bits (182), Expect = 1.064e-14
Identity = 60/232 (25.86%), Postives = 108/232 (46.55%), Query Frame = 2

Query:   86 LKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDK--DPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGS 769
            ++D  RLDGR   +YR++ I    +S  +    +  +SLG T VL  I  ++ +P+   P  G ++  V+ S       + R   E  ++L   + K  N   ++DL SLCIC GE  + + +++     DGNL D I ++    L   + P V I E         L D   D + L ++ +P  VT+  +   ++ ++D    E+    + +++ +T T  + C   +G 
Sbjct:   18 VRDDLRLDGRGCEDYRHMEIETDVVSNTD---GSAKISLGHTDVLVGIKAEIGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLLKVFNNRHSLDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPKVHISEDEEGGKEIELSDDPFDCMRLNVENVPCIVTLCKI--GHRHVVDATLQEKACSVASLLIAVTHTGMVTCVRKMGG 244

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BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
Match: exosc8 (exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736])

HSP 1 Score: 65.855 bits (159), Expect = 1.069e-11
Identity = 60/247 (24.29%), Postives = 114/247 (46.15%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCW--HPLGSEL 775
            FK  +     R  LK++ R DGR + E+R  ++ +  IS    A  + L+ +G T V+C I  ++  P +   ++G +  +V+   + ++  +     E+A      I   +  +  ++L+ LCI   +  + +  +I     DGNLLD  +   L  LKT + P+VTI +  ++   +  K +    L+I   P   +  V  +S  +I+     EE++L + ++  +T      C    P G+ L
Sbjct:    5 FKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNINSIST---ADGSALVKIGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQAASQFIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLPEVTINKETDLAEVDIEKKRR---LKINRHPVGSSFAVFDDS--IIIVDPTAEEESLSTALMTVVTDEEDRLCAVHKPGGTSL 243

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BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Match: kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3 [Source:Xenbase;Acc:XB-GENE-489131])

HSP 1 Score: 130.568 bits (327), Expect = 1.337e-33
Identity = 71/218 (32.57%), Postives = 132/218 (60.55%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            + + + +RLDGR  ++YRNI I           +  C++ LGKT+VLC++S ++V PK N P+ G++  D+  S +     ++   +E ++KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     +GN++D   ++A+ GL  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +
Sbjct:   16 QAIAERKRLDGRQTYDYRNIKITF------GTDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSV-QGEEVTVY-TPEERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISM 225

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Match: kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3 [Source:Xenbase;Acc:XB-GENE-489131])

HSP 1 Score: 129.798 bits (325), Expect = 2.219e-33
Identity = 71/218 (32.57%), Postives = 132/218 (60.55%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            + + + +RLDGR  ++YRNI I           +  C++ LGKT+VLC++S ++V PK N P+ G++  D+  S +     ++   +E ++KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     +GN++D   ++A+ GL  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +
Sbjct:   16 QAIAERKRLDGRQTYDYRNIKITF------GTDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSV-QGEEVTVY-TPEERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISM 225

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Match: kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3 [Source:Xenbase;Acc:XB-GENE-489131])

HSP 1 Score: 129.413 bits (324), Expect = 3.280e-33
Identity = 81/275 (29.45%), Postives = 152/275 (55.27%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI----KARQSSNE 886
            + + + +RLDGR  ++YRNI I           +  C++ LGKT+VLC++S ++V PK N P+ G++  D+  S +     ++   +E ++KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     +GN++D   ++A+ GL  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +    ++      G  +        RC ++   KV  +  LI + +    KAR+   +
Sbjct:   16 QAIAERKRLDGRQTYDYRNIKITF------GTDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSV-QGEEVTVY-TPEERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISMNKHREICTIQSSGGIMLLKEQV-LRCSKVAGVKVGEITELIQKALENDKKARKEGGK 281

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Match: kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3 [Source:Xenbase;Acc:XB-GENE-489131])

HSP 1 Score: 129.798 bits (325), Expect = 3.311e-33
Identity = 71/218 (32.57%), Postives = 132/218 (60.55%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            + + + +RLDGR  ++YRNI I           +  C++ LGKT+VLC++S ++V PK N P+ G++  D+  S +     ++   +E ++KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     +GN++D   ++A+ GL  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +
Sbjct:   16 QAIAERKRLDGRQTYDYRNIKITF------GTDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSV-QGEEVTVY-TPEERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISM 225

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Match: kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3 [Source:Xenbase;Acc:XB-GENE-489131])

HSP 1 Score: 129.028 bits (323), Expect = 4.523e-33
Identity = 71/218 (32.57%), Postives = 132/218 (60.55%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            + + + +RLDGR  ++YRNI I           +  C++ LGKT+VLC++S ++V PK N P+ G++  D+  S +     ++   +E ++KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     +GN++D   ++A+ GL  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +
Sbjct:   16 QAIAERKRLDGRQTYDYRNIKITF------GTDYGCCIVELGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERCLRNSKCIDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSV-QGEEVTVY-TPEERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGLLVISM 225

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Match: Exosc9 (exosome component 9 [Source:MGI Symbol;Acc:MGI:1355319])

HSP 1 Score: 122.479 bits (306), Expect = 3.522e-32
Identity = 70/219 (31.96%), Postives = 129/219 (58.90%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ GE   +   E   ++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE---ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM 225

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Match: Exosc9 (exosome component 9 [Source:MGI Symbol;Acc:MGI:1355319])

HSP 1 Score: 125.176 bits (313), Expect = 1.523e-31
Identity = 80/269 (29.74%), Postives = 148/269 (55.02%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGS-ELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ GE   +   E   ++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G   L  +  F  RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE---ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVF--RCSKIAGVKVAEITELIQKALENDQ 273

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Match: Exosc8 (exosome component 8 [Source:MGI Symbol;Acc:MGI:1916889])

HSP 1 Score: 85.5001 bits (210), Expect = 2.099e-18
Identity = 68/278 (24.46%), Postives = 124/278 (44.60%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            FK ++     R+ LK++ R DGR + E+R  ++ +  IS    A  + L+ LG T V+C +  +   P  + P RG +  +V+   + ++  +     E+A      I   ++  + +  + LCI  G+  + +  ++     DGN+LD    + L  LK  + P+VTI E   +    NLK K    L ++T P   +  V  +   LI+D    EE      + V      +L C H  G    T     + C     ++   ++ L+ +VI++ +
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSIST---ADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETAL-AEVNLKKKS--YLNVRTNPVATSFAVF-DDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLTGAKLQD-CMSRAVTRHKEVSKLLDEVIQSMR 274

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Match: Exosc9 (exosome component 9 [Source:MGI Symbol;Acc:MGI:1355319])

HSP 1 Score: 76.6406 bits (187), Expect = 2.405e-16
Identity = 45/129 (34.88%), Postives = 79/129 (61.24%), Query Frame = 2

Query:  350 LKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ GE   +   E   ++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +
Sbjct:   16 VKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE---ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM 141

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Match: Exosc8 (exosome component 8 [Source:MGI Symbol;Acc:MGI:1916889])

HSP 1 Score: 53.9138 bits (128), Expect = 1.271e-8
Identity = 24/78 (30.77%), Postives = 41/78 (52.56%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLI 280
            FK ++     R+ LK++ R DGR + E+R  ++ +  IS    A  + L+ LG T V+C +  +   P  + P RG +
Sbjct:    5 FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSIST---ADGSALVKLGNTTVICGVKAEFAAPPVDAPDRGYV 79

[Close]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Match: sp|Q5XJQ5|EXOS9_DANRE (Exosome complex component RRP45 OS=Danio rerio OX=7955 GN=exosc9 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.378e-31
Identity = 77/264 (29.17%), Postives = 146/264 (55.30%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIK 865
            K +K+ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK + P+ G++  ++  S + + + +    +E  + L   +E+CL  +K +D +SLC+ +GE+V+ I +++     DGNL+D   ++A+  L  F+RPDV I +  ++TV    +++DP+PL I  MP  V+    ++ + L++D  + EE   D  +V+ +    ++      G  +        RC ++   KV  +  LI++ ++
Sbjct:   16 KAIKEKKRLDGRQTYDYRNIKISF------GTDYGCCVVELGKTRVLSQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-QGRDVTVF-GPEERDPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGIMLLKEQV-LRCSKIASVKVSEITELINKALE 270

[Close]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Match: sp|Q3SWZ4|EXOS9_BOVIN (Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXOSC9 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.066e-31
Identity = 77/267 (28.84%), Postives = 150/267 (56.18%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++  L+++DPVPL I  MP  V+     +   L++D ++ EE  +D  +V+ +    ++      G  +        RC ++   KVV +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIKISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV-LRCSKIAGVKVVEITELIQKALENDQ 273

[Close]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Match: sp|Q9JHI7|EXOS9_MOUSE (Exosome complex component RRP45 OS=Mus musculus OX=10090 GN=Exosc9 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.066e-30
Identity = 80/269 (29.74%), Postives = 148/269 (55.02%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGS-ELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ GE   +   E   ++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G   L  +  F  RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE---ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVF--RCSKIAGVKVAEITELIQKALENDQ 273

[Close]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Match: sp|Q4QR75|EXOS9_RAT (Exosome complex component RRP45 OS=Rattus norvegicus OX=10116 GN=Exosc9 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.916e-30
Identity = 80/269 (29.74%), Postives = 148/269 (55.02%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGS-ELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ GE   +   E   ++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G   L  +  F  RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE---ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVF--RCSKIAGVKVAEITELIQKALENDQ 273

[Close]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Match: sp|Q06265|EXOS9_HUMAN (Exosome complex component RRP45 OS=Homo sapiens OX=9606 GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.170e-29
Identity = 76/267 (28.46%), Postives = 148/267 (55.43%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQ 874
            + +++ +RLDGR  ++YRNI I           +  C++ LGKT+VL ++SC++V PK N  + G++  ++  S +   + +    ++  +KL  ++E+CL  +K +D +SLC+ AGE+V+ I +++     DGN++D   ++A++ L  F+RPDV++ +   +T++   +++DPVPL I  MP  V+     +   L++D N+ EE  +D  +V+ +    ++      G  +        RC ++   KV  +  LI + ++  Q
Sbjct:   16 RAIEEKKRLDGRQTYDYRNIRISF------GTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSV-QGDEVTLY-TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV-LRCSKIAGVKVAEITELILKALENDQ 273

[Close]

BLAST of Exosome complex component RRP45 vs. TrEMBL
Match: A0A3P7LAR7 (Uncharacterized protein (Fragment) OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS9645 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.910e-42
Identity = 99/319 (31.03%), Postives = 167/319 (52.35%), Query Frame = 2

Query:   83 LLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNN--SNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTL-DSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI----------------------KARQSSNET-IIINSASYVPSHPVFVDENLEDNE 961
            +L    RLDGR + EYR I+   P    +      C++ +G T VL KIS +VVEPK   P++G++ ++ + + +  N    K R   ++  +L  +++ C    VDLD+LCI A ERVF I ++++A   DGNL D   L+A++ L +F+RPDV +G+ G + V    K + PVPL ++ +P  VT+G+  ++  ++ D  K EE  L   +++V LT   +L C H  G          +RC  L  S+  +L  L+++V+                      +A+Q ++E  ++++SAS++P         LE+ E
Sbjct:   14 MLLSGVRLDGRTLKEYREITFHFPHGHANG---GCCIVKIGSTAVLAKISVEVVEPKHYRPAQGMLFVNFDATILSANDVKRKGRSRDDEGRRLSAVLQTCFRDCVDLDALCIVAWERVFAIRVDLRALASDGNLGDCGALAAVVALASFRRPDVYVGDEGRVIVDTQCKHRPPVPLFLRRIPVLVTLGLASDTKIILQDPTKREEAILTGGRVMVGLTAHGELCCLHTSGLSTPIRPDSLSRCILLANSRARSLVTLVNRVLDGLERQRQARQAAFSARQADVERAKQMADEAPLVLSSASFLPGGENAPVGGLEEGE 329

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BLAST of Exosome complex component RRP45 vs. TrEMBL
Match: H2KTE0 (Exosome complex component RRP45 OS=Clonorchis sinensis OX=79923 GN=CLF_102525 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.359e-42
Identity = 91/298 (30.54%), Postives = 168/298 (56.38%), Query Frame = 2

Query:   29 YLIKIYFKFIQIFNM---------IRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTL-DSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQSSNETI 892
            Y I    +F+  FN+         +  +L D  RLDGR++HEYR IS R P+ + D+  +S C++++G T V+ ++S +V+EPK + PS+G++ ++ + + I  N+   R   E+  +L  +++  L  +VDLDSLCI A ERVF I +E++A   DGNL D   L+A+  L  F+RPDV + ++G +TV    K +  V L ++ +P  VT G+  ++  ++ D    E+  L   ++++ +T  +++ C +  G       +  ++C  +  S+  +L  L+++V+   +  +E +
Sbjct:   16 YFISHTSRFVHRFNLEMANAEILTLTDMLVDGYRLDGRSLHEYREISFRFPRSAEDD-HNSCCIVNIGATSVVARVSAEVLEPKPSRPSQGMLFVNFDVTLIHPNAAS-RHKIEEGRRLSSVLQTLLRDSVDLDSLCIVAWERVFAIRVELRALSYDGNLGDCGALAAISALAAFRRPDVFVQDNGTVTVDTEAKYRPRVALGLRRIPVLVTFGMTADATVIVQDATAREDAILTGGRVMIGVTSFSEVCCLYTTGLTKPLRSTSLSKCVRMADSRARSLVALVNRVLDGLKRQHEAM 311

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BLAST of Exosome complex component RRP45 vs. TrEMBL
Match: A0A1S8WYF4 (3' exoribonuclease family, domain 1 OS=Opisthorchis viverrini OX=6198 GN=X801_04703 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.601e-41
Identity = 87/271 (32.10%), Postives = 159/271 (58.67%), Query Frame = 2

Query:   83 LLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTL-DSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQSSNETI 892
            +L D  RLDGR++HEYR IS R P+ + D+  +S C++++G T V+ ++S +V+EPK + PS+G++ ++ + + I  N+   R   E+  +L  +++  L  +VDLDSLCI A ERVF I +E++A   DGNL D   L+A+  L  F+RPDV + ++G +TV    K +  V L ++ +P  VT G+  ++  ++ D    E+  L   ++++ +T  +++ C +  G       +  ++C  +  S+  +L  L+++V+   +  +E I
Sbjct:   12 MLLDGYRLDGRSLHEYREISFRFPRSAEDD-HNSCCIVNIGATSVVARVSAEVLEPKPSRPSQGMLFVNFDATLIHPNAPS-RQKIEEGRRLSSVLQTLLRDSVDLDSLCIVAWERVFAIRVELRALSYDGNLGDCGALAAISALAAFRRPDVFVQDNGTVTVDTEAKYRPRVALGLRRIPVLVTFGMTADATVIVQDATAREDAILTGGRVMIGVTSFSEVCCLYTTGLTKPLRSTSLSKCVRMADSRARSLVALVNRVLDGLRRQHEAI 280

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BLAST of Exosome complex component RRP45 vs. TrEMBL
Match: A0A183T627 (RNase_PH domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS11925 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.382e-40
Identity = 94/300 (31.33%), Postives = 160/300 (53.33%), Query Frame = 2

Query:  101 RLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNS--NKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTL-DSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI-------KARQSSNET----------------IIINSASYVPS 922
            RLDGR + EYR I+   P    +      C++ +G T VL K+S +VVEPK   P++G++ ++ + + +  N    K R   ++  +L  +++ C    VDLD+LCI A ERVF I ++++A   DGNL D   L+A++ L +F+RPDV +G+ G + V    K + PVPL ++ +P  VT+G+  ++  ++ D  K EE  L   +++V LT   +L C H  G          +RC  L  S+  +L  L+ +V+       +ARQ+++                  ++++SAS++P 
Sbjct:   20 RLDGRTLKEYREITFHFPHGHANG---GCCIVKIGSTAVLAKVSVEVVEPKHYRPAQGMLFVNFDATILSANEVKRKGRSRDDEGRRLSAVLQTCFRDCVDLDALCIVAWERVFAIRVDLRALASDGNLGDCGALAAVVALASFRRPDVYVGDEGRVIVDTQCKHRPPVPLFLRRIPVLVTLGLASDTKIILQDPTKREEAILTGGRVMVGLTSHGELCCLHTSGLSTPIRPESLSRCILLANSRARSLVTLVHRVLDGLERQRQARQAASSARQADVERAKQMEEDAPLVLSSASFLPG 316

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BLAST of Exosome complex component RRP45 vs. TrEMBL
Match: A0A0X3PNT3 (RNase_PH domain-containing protein OS=Schistocephalus solidus OX=70667 GN=TR167580 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.470e-40
Identity = 94/300 (31.33%), Postives = 160/300 (53.33%), Query Frame = 2

Query:  101 RLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNS--NKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTL-DSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI-------KARQSSNET----------------IIINSASYVPS 922
            RLDGR + EYR I+   P    +      C++ +G T VL K+S +VVEPK   P++G++ ++ + + +  N    K R   ++  +L  +++ C    VDLD+LCI A ERVF I ++++A   DGNL D   L+A++ L +F+RPDV +G+ G + V    K + PVPL ++ +P  VT+G+  ++  ++ D  K EE  L   +++V LT   +L C H  G          +RC  L  S+  +L  L+ +V+       +ARQ+++                  ++++SAS++P 
Sbjct:   20 RLDGRTLKEYREITFHFPHGHANG---GCCIVKIGSTAVLAKVSVEVVEPKHYRPAQGMLFVNFDATILSANEVKRKGRSRDDEGRRLSAVLQTCFRDCVDLDALCIVAWERVFAIRVDLRALASDGNLGDCGALAAVVALASFRRPDVYVGDEGRVIVDTQCKHRPPVPLFLRRIPVLVTLGLASDTKIILQDPTKREEAILTGGRVMVGLTSHGELCCLHTSGLSTPIRPESLSRCILLANSRARSLVTLVHRVLDGLERQRQARQAASSARQADVERAKQMEEDAPLVLSSASFLPG 316

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BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:103023601])

HSP 1 Score: 124.02 bits (310), Expect = 1.165e-31
Identity = 70/218 (32.11%), Postives = 127/218 (58.26%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            K +++ +RLDGR  ++YRNI I           +  C +SLGKT+VL ++SC++V PK + P+ G++  ++  S + + + +    +E  + L   +E+CL  +K +D +SLC+ +GE+V+ I +++     DGNL+D   ++A+  L  F+RPDV I +  +IT+  + +++DPV L I  MP  V+     +   L++D  + EE   D  +V+ +
Sbjct:   16 KAVEEKKRLDGRQTYDYRNIRITF------GTDYGCCTVSLGKTRVLAQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFQPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-QGRDITIF-SPEERDPVALSIYHMPICVSFAFFQQGTYLLVDPCEKEEQVTDGLLVIAM 225

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BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:103023601])

HSP 1 Score: 124.405 bits (311), Expect = 1.207e-31
Identity = 70/218 (32.11%), Postives = 127/218 (58.26%), Query Frame = 2

Query:   80 KLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCL 727
            K +++ +RLDGR  ++YRNI I           +  C +SLGKT+VL ++SC++V PK + P+ G++  ++  S + + + +    +E  + L   +E+CL  +K +D +SLC+ +GE+V+ I +++     DGNL+D   ++A+  L  F+RPDV I +  +IT+  + +++DPV L I  MP  V+     +   L++D  + EE   D  +V+ +
Sbjct:   16 KAVEEKKRLDGRQTYDYRNIRITF------GTDYGCCTVSLGKTRVLAQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFQPNRQSELLVTLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAI-QGRDITIF-SPEERDPVALSIYHMPICVSFAFFQQGTYLLVDPCEKEEQVTDGLLVIAM 225

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BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Match: exosc7 (exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-050417-47])

HSP 1 Score: 73.559 bits (179), Expect = 2.411e-14
Identity = 58/236 (24.58%), Postives = 109/236 (46.19%), Query Frame = 2

Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIG--ESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLG 766
             I   ++D  R+DGR   +YR++ +    +S  +    +  +SLG T VL  I  ++ +PK   P+ G ++  V+ S       + R   E  ++L   + K  N   ++DL SLCIC GE  + + I++     DGNL D + ++    L   + P V +   E G   +  +    D + L +  +P  VT+  +   ++ ++D    E+    + +++ +T    + C   LG
Sbjct:   13 YIMHGVRDDLRVDGRGCEDYRHMEVETDVVSNTD---GSAKVSLGHTDVLVGIKAEIGKPKPAVPNEGYVEFFVDCSANATPEFEGRGGEELGVELSNTLYKVFNNRHSLDLRSLCICPGEHCWVLYIDVLLLQCDGNLFDAMSVAIKAALFNTRIPKVQVSEDEEGGKEIELSDDPYDCMRLDVTNVPCIVTLSKI--GHRHVVDATLQEKACSVASLLISITHKGLVTCVRKLG 243

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BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Match: exosc8 (exosome component 8 [Source:NCBI gene;Acc:103041470])

HSP 1 Score: 70.8626 bits (172), Expect = 1.872e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWH-PLGSEL 775
            FK  +     R  LK++ R DGR + E+R  ++ +  I     A  + ++ +G T V+C I  ++  P ++ P +G I  +V+   + ++  +     E+A      I   ++  K +  + LCI   +  + +  +I     DGN+LD  +++ L  LK  + P VTI +  ++    +++ K    LQI   P   +  V  +   LI+D    EE    S I   +   +QL  +H P GS L
Sbjct:    5 FKTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNIGSI---GTADGSAMVKIGNTTVICGIKAELSAPPSDAPDKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIDGSKIIKKEDLCIEKSKLCWVLYCDIMCLDYDGNVLDACIITLLAALKNTQIPKVTINKETDL-AEVDIEHKR--HLQINKHPVSSSFAVF-DDTVLIVDPTAEEESLATSVITAVVDEDDQLCAFHKPGGSSL 243

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Match: exosc8 (exosome component 8 [Source:NCBI gene;Acc:103041470])

HSP 1 Score: 68.5514 bits (166), Expect = 9.958e-13
Identity = 61/247 (24.70%), Postives = 113/247 (45.75%), Query Frame = 2

Query:   44 YFKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWH-PLGSEL 775
            + +  +     R  LK++ R DGR + E+R  ++ +  I     A  + ++ +G T V+C I  ++  P ++ P +G I  +V+   + ++  +     E+A      I   ++  K +  + LCI   +  + +  +I     DGN+LD  +++ L  LK  + P VTI +  ++    +++ K    LQI   P   +  V  +   LI+D    EE    S I   +   +QL  +H P GS L
Sbjct:    3 FIRTAEPLEYHRSFLKENCRPDGRELGEFRPTTLNIGSI---GTADGSAMVKIGNTTVICGIKAELSAPPSDAPDKGYIVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADVIDGSKIIKKEDLCIEKSKLCWVLYCDIMCLDYDGNVLDACIITLLAALKNTQIPKVTINKETDL-AEVDIEHKR--HLQINKHPVSSSFAVF-DDTVLIVDPTAEEESLATSVITAVVDEDDQLCAFHKPGGSSL 242

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BLAST of Exosome complex component RRP45 vs. Ensembl Sea Lamprey
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:450057])

HSP 1 Score: 111.694 bits (278), Expect = 8.089e-28
Identity = 66/220 (30.00%), Postives = 125/220 (56.82%), Query Frame = 2

Query:  212 QVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIK 865
            +VL ++SC++V PK N P+ G++ +++  S + + + +    +E  ++L  ++E+CL  ++ VD +SLC+ AGE+V+ I  ++     DGN+LD   ++A+  L  F+RPDV++ +   +TV+   +++DPVPL I  MP  V+     +   L++D  +LEE  +D ++V+ +    +L      G  + T      RC ++   KV  +  LI + +K
Sbjct:    1 RVLAQVSCELVAPKQNRPTDGILFVNLELSPMASPALEAGRQSEMGVELNRLLERCLRTSRCVDTESLCVIAGEKVWQIRADVHLLNHDGNVLDAATVAAVTALAHFRRPDVSV-QGSEVTVYPP-EERDPVPLSIHHMPMPVSFAFFEQGTYLLVDATELEERVMDGRLVIAMNKHGELCAVQSSGGIMLTQDQM-LRCTKIANVKVGEITELIQRALK 217

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BLAST of Exosome complex component RRP45 vs. Ensembl Sea Lamprey
Match: exosc8 (exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736])

HSP 1 Score: 65.4698 bits (158), Expect = 2.299e-12
Identity = 60/250 (24.00%), Postives = 113/250 (45.20%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIG-ESG--NITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLT-PTNQLWCWH-PLGSEL 775
            FK  +     R  LK++ R DGR + E+R  ++ +  +S    A  + L+ +G T V+C +  ++  P +  P +G I  ++    + +   +     E+A      +   ++ +  + L  LCI  G+  + +  ++     DGN+LD   ++ L  L+    P V +  E+G   +TV E L      P+++   P   +  +  +   L++D    EE+ L   +V  +T   +QL   H P GS L
Sbjct:    8 FKTAEPVEYYRSFLKENCRPDGRELGEFRVTTLNIGSLST---ADGSALVKVGNTTVICGVKGELAAPTSEAPDQGFIVPNLELPPLCSPRFRPGPPGEQAQAASQFLADVIDSSHIIALQDLCIEKGKLAWVLYCDLMCLDYDGNILDACSIALLAALQNLTLPKVGVSKETGLAQVTVQERL------PVKVGNYPVSTSFSIF-DGTVLLVDPTD-EEEALSCGMVTIVTDEEDQLCAVHKPGGSPL 246

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BLAST of Exosome complex component RRP45 vs. Ensembl Sea Lamprey
Match: exosc7 (exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-050417-47])

HSP 1 Score: 50.447 bits (119), Expect = 2.528e-7
Identity = 44/192 (22.92%), Postives = 88/192 (45.83%), Query Frame = 2

Query:   86 LKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSN---KLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKD--KDPVPLQIKTMPFFVTI 640
            ++D  R DGR   ++R + +    +S  N + S   L LG+T VL  +  ++  P+ + P  G ++  V+ +    N+    + R   + +L++   +++    A  +DL SLCI   ++ + + +++      GN+ D   ++    L   + P V + E         L D   D V L++  +P  VT+
Sbjct:   19 VQDGVRGDGRGCEDFRVVELETEVVS--NTSGSA-RLRLGQTDVLVGVKAELGSPRLDCPDEGYLEFFVDCTTSSANATPEFEGRGGEDLSLEISSALQRSFAHAGCLDLRSLCILPRQQCWVLYVDVLLLEYGGNVFDAASIAVKAALFNTRIPTVHVSEDEEGVREIELSDDPYDCVRLEVARVPCIVTL 207

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BLAST of Exosome complex component RRP45 vs. Ensembl Yeast
Match: RRP45 (Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9); protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002688])

HSP 1 Score: 91.2781 bits (225), Expect = 2.453e-21
Identity = 59/197 (29.95%), Postives = 102/197 (51.78%), Query Frame = 2

Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDAT-EKALKLEPIIEKCLNK--AVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVL 649
             I + L+ + RLDGR+  ++R++ I   K   D        + +G T+V C+ISC + +P  + P  GL  +    S +  +  +  + T E  +    IIEK + +  A+D++ LCI AG + + +  ++     DG  +D   ++ + GL  FK+PD+T+ GE   I VH  + +++PVPL I  +P  VT    
Sbjct:   14 FILEALRQNYRLDGRSFDQFRDVEITFGKEFGD------VSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE--QIIVHP-VNEREPVPLGILHIPICVTFSFF 201

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BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
Match: EDO40802 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S657])

HSP 1 Score: 130.568 bits (327), Expect = 1.592e-35
Identity = 79/256 (30.86%), Postives = 137/256 (53.52%), Query Frame = 2

Query:  104 LDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTI-GESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI 862
            LDGR +++YR + I        ++    C + LGKT+VL ++SC++ +PK N  + G I ++V  S + + + +    +E  ++L   +E+    ++A+D +SLCI AGE+V+ + ++I+     GN+LD   +SA+  L  F+RPDV++ GE   +T+H    D+DPVPL I  MP  VT         L++D N  EE  +D  +++ L    ++ C   +G  +        RC  +   KV  +  LI + +
Sbjct:    2 LDGRGIYDYRKLRIAF------SVERGHCEVQLGKTRVLAQVSCEITKPKTNRQTDGHIYINVELSPMASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGNILDCACISAITALSHFRRPDVSVSGE--EVTIHSE-ADRDPVPLSILHMPICVTFAFFDNGELLLVDPNDKEEAVMDGHMMMALNIHREV-CGAVMGGGVSLETDQIIRCSNIAVVKVAEITELIEKAL 247

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BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
Match: EDO34153 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQ48])

HSP 1 Score: 98.2117 bits (243), Expect = 1.669e-23
Identity = 73/270 (27.04%), Postives = 131/270 (48.52%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLI 850
            FK  +     ++ LK++ R DGR + ++R   + +  IS    A+ + L+ LG T V+C ++ +  EP A+ P++G I  +V+   + + S +    +E A  L   I+  +  +  +DL+ LCI  G+ V+ + I++     DGN+ D  V++ L  L+  +   VTI E          KD   + L++K+MP  VT G+  + + +  D    EE     K+ V +T  N++   H  G    T       CF++   +V+ +  LI
Sbjct:    5 FKTAEPVEYYKQFLKENIRPDGRGLFDFRETILNVGSIST---ANGSALVKLGNTTVVCGVTAEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITNSQLIDLEDLCIVDGKLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKD---IHLKLKSMPVAVTFGIF-DDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPGGPPLTQDKL-QECFDVTTGRVLEVQQLI 266

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
Match: EDO34155 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQ50])

HSP 1 Score: 53.5286 bits (127), Expect = 2.736e-8
Identity = 54/211 (25.59%), Postives = 92/211 (43.60%), Query Frame = 2

Query:  218 LCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLI 850
            LC    +  EP A+ P++G I  +V+   + + S +    +E A  L   I+  + K      L   A   V+ + I++     DGN+ D  V++ L  L+  +   VTI E          KD   + L++K+MP  VT G+  + + +  D    EE     K+ V +T  N++   H  G    T       CF++   +V+ +  LI
Sbjct:   12 LCFFKKEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITKRSM--ELLQHAKYLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEETETPEPSENKD---IHLKLKSMPVAVTFGIF-DDDHIYCDPTDEEERLASGKVSVVMTTNNKVVAVHKPGGPPLTQDKL-QECFDVTTGRVLEVQQLI 215

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
Match: EDO34904 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMZ0])

HSP 1 Score: 49.2914 bits (116), Expect = 8.323e-7
Identity = 52/225 (23.11%), Postives = 95/225 (42.22%), Query Frame = 2

Query:  101 RLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLN--KAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKD-KDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLG 766
            R DGR+  +YR   +    +S  N + S   L L  T +L  +  ++ EP    P  G ++  V+ S   +     R   + A  L   +++  +   A+DL SL I  G++ + + ++       GNL D + L+    L   + P+VT+   G     E   D  D   L    MP  +T+  +    + ++D ++ EE   D  ++V +     +     +G
Sbjct:   23 RSDGRSCEDYRYFEVETGIVS--NTSGSA-RLRLSDTDILVGVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISDDPYDCHQLPPDQMPIIITLSKI--GGRHVVDASQSEELCSDCHLLVAVNSCGNVCGQQKIG 242

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
Match: exosc9 (exosome component 9 [Source:NCBI gene;Acc:101156627])

HSP 1 Score: 129.028 bits (323), Expect = 3.837e-33
Identity = 74/267 (27.72%), Postives = 148/267 (55.43%), Query Frame = 2

Query:   68 NMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCL--NKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVI 862
            + I K +++ +RLDGR  ++YR I I           +  C + LG+T+V+ ++SC++V PK + P+ G++  ++  S + + + +    +E ++KL   +E+CL  +K +D +SLC+ +GE+V+ I +++    +DGNL+D   ++A+  L  F+RPDV + +   +TV+ + +++DP+PL I  MP  V+     +   L++D  + EE  +D  +++ +    ++      G  +        RC ++   KV  +  LIS+ +
Sbjct:   12 DFILKAIEEKKRLDGRQTYDYRKIKISF------GTDYGCCFVDLGQTRVMAQVSCELVAPKESRPNEGIMFFNIELSPLASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTESLCVVSGEKVWQIRVDVHMLNNDGNLMDASSIAAIAALCHFRRPDVAV-QGEEVTVY-SPEERDPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGIMLLKEQV-MRCSKIASVKVSEITELISKAL 269

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
Match: exosc8 (exosome component 8 [Source:NCBI gene;Acc:101168140])

HSP 1 Score: 68.5514 bits (166), Expect = 1.162e-12
Identity = 61/246 (24.80%), Postives = 111/246 (45.12%), Query Frame = 2

Query:   47 FKFIQIFNMIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWH-PLGSEL 775
            FK  +        LK++ R DGR + E+R  ++ +  IS    A  + L+ LG T V+C I  ++  P    P +G I  +V+   + ++  +     E+A      I   +  +  +  + LCI  G+  + +  +I     DGN+LD  +++ L  LK  + P VT+ ++       +LK++  +P  +   P   +  +  +S  LI+D    EE    S++ V      +L   H P G+ L
Sbjct:    5 FKTAEPLEYHMSFLKENCRPDGRELSEFRTTTLNIGSIST---ADGSALVKLGSTTVICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQASSQFIADVIESSEIIKPEDLCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLPKVTVNKA-TCKPEIDLKERHELP--VHKHPVGTSFCIFQDS-ILIVDPTADEESLSTSRLSVVTDEEERLCSLHKPGGTSL 243

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
Match: exosc7 (exosome component 7 [Source:NCBI gene;Acc:101160328])

HSP 1 Score: 67.3958 bits (163), Expect = 3.152e-12
Identity = 55/232 (23.71%), Postives = 106/232 (45.69%), Query Frame = 2

Query:   86 LKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNK--AVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDK--DPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGS 769
            ++D  R+DGR+  +YR++ +    +S  +    +  +SLG T VL  I  ++ +P+   P  G ++  V+ S       + R   E  ++L   + +  N   ++DL  LCI AGE  + + +++     DGNL D I ++    L   K P V +           L D   D V L ++ +P  VT+  +   ++ ++D    E+    + +++ +T    + C   +G 
Sbjct:   18 IRDDLRVDGRSCEDYRHMEVETDVVSNTD---GSARVSLGHTAVLVGIKAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRVFNNKNSIDLKGLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPRVHMSSDDEGGKEVELSDDPFDCVRLSVENVPCIVTLCKV--GHRHVVDATLQEKACSVASLIIAVTHRGTVTCVKKVGG 244

[Close]

BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
Match: exosc8 (exosome component 8 [Source:NCBI gene;Acc:101168140])

HSP 1 Score: 66.2402 bits (160), Expect = 4.688e-12
Identity = 59/234 (25.21%), Postives = 108/234 (46.15%), Query Frame = 2

Query:   83 LLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKA--VDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWH-PLGSEL 775
             LK++ R DGR + E+R  ++ +  IS    A  + L+ LG T V+C I  ++  P    P +G I  +V+   + ++  +     E+A      I   +  +  +  + LCI  G+  + +  +I     DGN+LD  +++ L  LK  + P VT+ ++       +LK++  +P  +   P   +  +  +S  LI+D    EE    S++ V      +L   H P G+ L
Sbjct:    3 FLKENCRPDGRELSEFRTTTLNIGSIST---ADGSALVKLGSTTVICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQAQASSQFIADVIESSEIIKPEDLCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLPKVTVNKA-TCKPEIDLKERHELP--VHKHPVGTSFCIFQDS-ILIVDPTADEESLSTSRLSVVTDEEERLCSLHKPGGTSL 229

[Close]

BLAST of Exosome complex component RRP45 vs. Planmine SMEST
Match: SMESG000033994.1 (SMESG000033994.1)

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 349/351 (99.43%), Postives = 349/351 (99.43%), Query Frame = 2

Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILXXXXXXXXXXXTNEILDSAQNDDWSRIESLVSHTEKVVYQKS 1123
            MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDN AHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQ IKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILDGSDDMDIDSDTNEILDSAQNDDWSRIESLVSHTEKVVYQKS
Sbjct:    1 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNKAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQAIKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILDGSDDMDIDSDTNEILDSAQNDDWSRIESLVSHTEKVVYQKS 351

[Close]

BLAST of Exosome complex component RRP45 vs. Planmine SMEST
Match: SMESG000033981.1 (SMESG000033981.1)

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 349/351 (99.43%), Postives = 349/351 (99.43%), Query Frame = 2

Query:   71 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQVIKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILXXXXXXXXXXXTNEILDSAQNDDWSRIESLVSHTEKVVYQKS 1123
            MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDN AHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQ IKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILDGSDDMDIDSDTNEILDSAQNDDWSRIESLVSHTEKVVYQKS
Sbjct:    1 MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNKAHSTCLLSLGKTQVLCKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVKSKVVALNCLISQAIKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEKLIHEAPEILDGSDDMDIDSDTNEILDSAQNDDWSRIESLVSHTEKVVYQKS 351

[Close]

BLAST of Exosome complex component RRP45 vs. Planmine SMEST
Match: SMESG000042098.1 (SMESG000042098.1)

HSP 1 Score: 48.521 bits (114), Expect = 3.740e-6
Identity = 49/225 (21.78%), Postives = 96/225 (42.67%), Query Frame = 2

Query:  101 RLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDV-VEPKANHPSRGLIK--LDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLG 766
            RL  R  + +R ISI         +  +   ++ G T+VL  I+ +   +P  ++P  G IK  +D++ + I   SN+  D   + +K   I     +  ++L  LCI   ++ + I ++I     DGNLLD++ +     LK    P V   ++              +  +    P +VT+  +    + ++D ++ EE    ++ +  + P   + C    G
Sbjct:   24 RLSNRGFYSFRPISIE--------VGFNKSEVNAGDTRVLVNINFEPDGKPLPSNPKEGYIKFKIDLSPAIITKMSNRKADEYCEYIKSLLIEAYSDSDIINLSDLCITPFKKCWIIYVDILVMECDGNLLDIVSIGINTALKNTSIPKVNSSDANK-----------ELQFKFDNCPIYVTVNKI--DCKYLIDADREEETCTSTRTMTAILPNGDIKCTSTDG 227

[Close]

BLAST of Exosome complex component RRP45 vs. Planmine SMEST
Match: SMESG000042098.1 (SMESG000042098.1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.498e-6
Identity = 49/225 (21.78%), Postives = 96/225 (42.67%), Query Frame = 2

Query:  101 RLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVLCKISCDV-VEPKANHPSRGLIK--LDVNTSFIKNNSNKLRDATEKALKLEPIIEKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLKTFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLILDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLG 766
            RL  R  + +R ISI         +  +   ++ G T+VL  I+ +   +P  ++P  G IK  +D++ + I   SN+  D   + +K   I     +  ++L  LCI   ++ + I ++I     DGNLLD++ +     LK    P V   ++              +  +    P +VT+  +    + ++D ++ EE    ++ +  + P   + C    G
Sbjct:   28 RLSNRGFYSFRPISIE--------VGFNKSEVNAGDTRVLVNINFEPDGKPLPSNPKEGYIKFKIDLSPAIITKMSNRKADEYCEYIKSLLIEAYSDSDIINLSDLCITPFKKCWIIYVDILVMECDGNLLDIVSIGINTALKNTSIPKVNSSDANK-----------ELQFKFDNCPIYVTVNKI--DCKYLIDADREEETCTSTRTMTAILPNGDIKCTSTDG 231

The following BLAST results are available for this feature:

BLAST of Exosome complex component RRP45 vs. Ensembl Human
BLAST of Exosome complex component RRP45 vs. Ensembl Celegans
BLAST of Exosome complex component RRP45 vs. Ensembl Fly
BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
BLAST of Exosome complex component RRP45 vs. TrEMBL
BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
BLAST of Exosome complex component RRP45 vs. Ensembl Sea Lamprey
BLAST of Exosome complex component RRP45 vs. Ensembl Yeast
BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
BLAST of Exosome complex component RRP45 vs. Planmine SMEST

BLAST of Exosome complex component RRP45 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
EXOSC9	2.575e-33	30.34	exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9...	[more]
EXOSC9	1.775e-30	29.50	exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9...	[more]
EXOSC9	2.263e-30	28.46	exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9...	[more]
EXOSC9	2.437e-30	28.46	exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9...	[more]
EXOSC8	2.509e-19	24.82	exosome component 8 [Source:HGNC Symbol;Acc:HGNC:1...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
exos-9	3.227e-32	28.89	EXOSome (Multiexonuclease complex) component [Sou...	[more]
exos-9	3.227e-32	28.89	EXOSome (Multiexonuclease complex) component [Sou...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Rrp45	6.849e-26	28.62	gene:FBgn0030789 transcript:FBtr0344090	[more]
Rrp45	6.849e-26	28.62	gene:FBgn0030789 transcript:FBtr0074355	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
exosc9	1.826e-32	29.17	exosome component 9 [Source:NCBI gene;Acc:450057]	[more]
exosc9	2.949e-19	25.38	exosome component 9 [Source:NCBI gene;Acc:450057]	[more]
exosc7	1.064e-14	25.86	exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-0504...	[more]
exosc8	1.069e-11	24.29	exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-0301...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
kdelr3	1.337e-33	32.57	KDEL endoplasmic reticulum protein retention recep...	[more]
kdelr3	2.219e-33	32.57	KDEL endoplasmic reticulum protein retention recep...	[more]
kdelr3	3.280e-33	29.45	KDEL endoplasmic reticulum protein retention recep...	[more]
kdelr3	3.311e-33	32.57	KDEL endoplasmic reticulum protein retention recep...	[more]
kdelr3	4.523e-33	32.57	KDEL endoplasmic reticulum protein retention recep...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Exosc9	3.522e-32	31.96	exosome component 9 [Source:MGI Symbol;Acc:MGI:135...	[more]
Exosc9	1.523e-31	29.74	exosome component 9 [Source:MGI Symbol;Acc:MGI:135...	[more]
Exosc8	2.099e-18	24.46	exosome component 8 [Source:MGI Symbol;Acc:MGI:191...	[more]
Exosc9	2.405e-16	34.88	exosome component 9 [Source:MGI Symbol;Acc:MGI:135...	[more]
Exosc8	1.271e-8	30.77	exosome component 8 [Source:MGI Symbol;Acc:MGI:191...	[more]

BLAST of Exosome complex component RRP45 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q5XJQ5\|EXOS9_DANRE	1.378e-31	29.17	Exosome complex component RRP45 OS=Danio rerio OX=...	[more]
sp\|Q3SWZ4\|EXOS9_BOVIN	5.066e-31	28.84	Exosome complex component RRP45 OS=Bos taurus OX=9...	[more]
sp\|Q9JHI7\|EXOS9_MOUSE	1.066e-30	29.74	Exosome complex component RRP45 OS=Mus musculus OX...	[more]
sp\|Q4QR75\|EXOS9_RAT	1.916e-30	29.74	Exosome complex component RRP45 OS=Rattus norvegic...	[more]
sp\|Q06265\|EXOS9_HUMAN	1.170e-29	28.46	Exosome complex component RRP45 OS=Homo sapiens OX...	[more]

BLAST of Exosome complex component RRP45 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3P7LAR7	2.910e-42	31.03	Uncharacterized protein (Fragment) OS=Dibothriocep...	[more]
H2KTE0	9.359e-42	30.54	Exosome complex component RRP45 OS=Clonorchis sine...	[more]
A0A1S8WYF4	7.601e-41	32.10	3' exoribonuclease family, domain 1 OS=Opisthorchi...	[more]
A0A183T627	1.382e-40	31.33	RNase_PH domain-containing protein OS=Schistocepha...	[more]
A0A0X3PNT3	1.470e-40	31.33	RNase_PH domain-containing protein OS=Schistocepha...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
exosc9	1.165e-31	32.11	exosome component 9 [Source:NCBI gene;Acc:10302360...	[more]
exosc9	1.207e-31	32.11	exosome component 9 [Source:NCBI gene;Acc:10302360...	[more]
exosc7	2.411e-14	24.58	exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-0504...	[more]
exosc8	1.872e-13	25.61	exosome component 8 [Source:NCBI gene;Acc:10304147...	[more]
exosc8	9.958e-13	24.70	exosome component 8 [Source:NCBI gene;Acc:10304147...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3


Match Name	E-value	Identity	Description
exosc9	8.089e-28	30.00	exosome component 9 [Source:NCBI gene;Acc:450057]	[more]
exosc8	2.299e-12	24.00	exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-0301...	[more]
exosc7	2.528e-7	22.92	exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-0504...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
RRP45	2.453e-21	29.95	Exosome non-catalytic core component; involved in ...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4


Match Name	E-value	Identity	Description
EDO40802	1.592e-35	30.86	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34153	1.669e-23	27.04	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34155	2.736e-8	25.59	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO34904	8.323e-7	23.11	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Exosome complex component RRP45 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
exosc9	3.837e-33	27.72	exosome component 9 [Source:NCBI gene;Acc:10115662...	[more]
exosc8	1.162e-12	24.80	exosome component 8 [Source:NCBI gene;Acc:10116814...	[more]
exosc7	3.152e-12	23.71	exosome component 7 [Source:NCBI gene;Acc:10116032...	[more]
exosc8	4.688e-12	25.21	exosome component 8 [Source:NCBI gene;Acc:10116814...	[more]

BLAST of Exosome complex component RRP45 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000033994.1	0.000e+0	99.43	SMESG000033994.1	[more]
SMESG000033981.1	0.000e+0	99.43	SMESG000033981.1	[more]
SMESG000042098.1	3.740e-6	21.78	SMESG000042098.1	[more]
SMESG000042098.1	4.498e-6	21.78	SMESG000042098.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30021651 ID=SMED30021651|Name=Exosome complex component RRP45|organism=Schmidtea mediterranea sexual|type=transcript|length=1143bp
ATTTAATTAAAATATATTTGTTTATAAATATCTAATAAAAATTTATTTTA
AGTTTATTCAAATTTTTAATATGATCAGAAAATTACTTAAAGATTCTCAG
CGCCTTGATGGGCGAAATGTTCATGAATATCGTAATATTTCCATTAGATT
GCCTAAAATTTCAATGGATAATATAGCACACTCAACATGCTTATTATCAT
TGGGCAAAACTCAAGTTTTATGTAAGATAAGTTGCGATGTGGTTGAGCCT
AAAGCGAACCATCCCAGTCGAGGATTAATTAAGCTTGATGTTAATACATC
TTTTATTAAAAATAATTCAAATAAATTACGCGATGCAACAGAAAAAGCAT
TGAAACTAGAACCTATTATTGAAAAATGTTTAAATAAAGCAGTCGATTTA
GATTCCTTGTGTATTTGTGCTGGTGAAAGAGTGTTTTGTATTAATATTGA
AATAAAAGCTCAATTTGACGACGGAAATCTATTGGATGTTATAGTTCTCT
CTGCTTTGATTGGATTAAAGACTTTTAAAAGGCCTGACGTGACAATTGGT
GAATCTGGAAATATTACTGTTCATGAAAATTTAAAAGACAAAGATCCTGT
TCCACTTCAAATCAAAACTATGCCATTTTTCGTGACTATTGGAGTCTTGA
TGGAGTCAAATCAATTAATTTTGGATTTAAACAAATTAGAAGAAGATACT
TTAGATAGTAAAATCGTTGTTTGCCTTACTCCCACCAATCAGCTGTGGTG
TTGGCATCCCCTTGGATCAGAACTTTGGACCAATTTATCTTTCAATAACC
GCTGTTTTGAACTTGTGAAAAGCAAAGTCGTTGCACTAAATTGTTTGATT
TCTCAAGTTATAAAAGCAAGACAATCGAGCAATGAAACAATTATTATAAA
TTCAGCATCTTATGTTCCCAGTCATCCCGTTTTCGTCGATGAAAATCTAG
AAGATAATGAACCGGAAAAATTGATCCATGAAGCTCCTGAAATTCTCGAC
GGATCCGACGATATGGATATCGATAGTGACACCAATGAAATCCTTGATTC
AGCTCAGAATGATGATTGGAGTCGAATAGAGTCTTTGGTATCTCACACTG
AGAAGGTCGTATATCAAAAGAGTTAAATACATGAGATCGGAAG

protein sequence of SMED30021651-orf-1

>SMED30021651-orf-1 ID=SMED30021651-orf-1|Name=SMED30021651-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=352bp
MIRKLLKDSQRLDGRNVHEYRNISIRLPKISMDNIAHSTCLLSLGKTQVL
CKISCDVVEPKANHPSRGLIKLDVNTSFIKNNSNKLRDATEKALKLEPII
EKCLNKAVDLDSLCICAGERVFCINIEIKAQFDDGNLLDVIVLSALIGLK
TFKRPDVTIGESGNITVHENLKDKDPVPLQIKTMPFFVTIGVLMESNQLI
LDLNKLEEDTLDSKIVVCLTPTNQLWCWHPLGSELWTNLSFNNRCFELVK
SKVVALNCLISQVIKARQSSNETIIINSASYVPSHPVFVDENLEDNEPEK
LIHEAPEILDGSDDMDIDSDTNEILDSAQNDDWSRIESLVSHTEKVVYQK
S*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR027408	PNPase/RNase_PH_dom_sf
IPR036345	ExoRNase_PH_dom2_sf
IPR001247	ExoRNase_PH_dom1
IPR015847	ExoRNase_PH_dom2
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **cellular component**
Term	Definition
GO:0000178	exosome (RNase complex)

Vocabulary: **biological process**
Term	Definition
GO:0006396	RNA processing

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	G3DSA:3.30.230.70		coord: 1..281 e-value: 2.2E-55 score: 190.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 30..155 e-value: 5.1E-10 score: 40.0
None	No IPR available	PANTHER	PTHR11097:SF14	EXOSOME COMPLEX COMPONENT RRP45	coord: 2..288
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 2..288
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 2..208
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	SSF55666	Ribonuclease PH domain 2-like	coord: 179..271