SMED30021641

Overview
NameSMED30021641
Smed IDSMED30021641
Length (bp)6892
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30021641 (SMED30021641) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30021641 (SMED30021641) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30021641 (SMED30021641) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30021641 (SMED30021641) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021641

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 25

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30021641SMESG000040565.1 PL08005A2A05ncbi_smed_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
anterior sideSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig37066newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig37066uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig15098newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig15098uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig4578newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig4578uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig48241newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000040565.1 Contig48241uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000074377.1 SMESG000040565.1 Contig31307newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000074377.1 SMESG000040565.1 Contig31307uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000076890.1 Contig4578newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021641SMESG000076890.1 Contig4578uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
protonephridiaSMED30021641SMESG000040565.1 dd_Smed_v6_4660_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Category 4 cellSMED30021641SMESG000040565.1 dd_Smed_v4_4660_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30021641 vs. Planmine SMEST
Match: SMESG000040565.1 (SMESG000040565.1)

HSP 1 Score: 1855.88 bits (4806), Expect = 0.000e+0
Identity = 1144/1164 (98.28%), Postives = 1145/1164 (98.37%), Query Frame = 1 
Query:   88 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLXXXXXXXXXXXXXXVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTXXXXXXXXXXXCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQ-----------------DKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDXXXXXXXXXXXXXXVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKXXXXXXXXXXXXXXXXXXXXXKILRELNKTPIDSTPGHXXXXXXXXXXXXXXXXNSTDEASSYSEGKLEHATLIRSENLVKSEEIENXXXXXXXXXXXXXXXXFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETIXXXXXXXXXXQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGXXXXXXXXXXXXXXXXXXDEINPSNLKGNERRENQLTIKSDKYHKKITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKGFQATSNEKVNLCSSQSLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDESQHSY 3528
            MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHS NNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQ                 DKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIK FQATSNEKVNLCSSQSLNTKSPILKSKKISSS+SSSSTSERSRSVSISQDESQHSY
Sbjct:    1 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSYNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNTKSPILKSKKISSSTSSSSTSERSRSVSISQDESQHSY 1164

HSP 2 Score: 1603.19 bits (4150), Expect = 0.000e+0
Identity = 1015/1027 (98.83%), Postives = 1020/1027 (99.32%), Query Frame = 1 
Query: 3508 DESQHSYDERTRLNTAIEHKETYTXXXXXXXITKKPSDKQNNLNGESDXXXXXXXXXXXXXXXXXISKESSPKQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDDLRDEVENXXXXXXXXXXXXXXXXXXXXAQLPEKKIFSENINDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEXXXXXXXXXXXXXXXXXEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYXXXXXXXXXXXXIDHDEKFNEIGNLKNQISRPKSKGAYLDNERXXXXXXXXXXXXXXXXXXXXXXXGETPYKNLEHREKFTXXXXXXXXITKKPLDIPMSLDNEMXXXXXXXXXXXXXXXXXXXXXXXXXXXHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRXXXXXXXXXXXXLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKRKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLXXXXXXXXXXXXXXXXFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVXXXXXXXXXXXQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPXXXXXXXXXXXXXXXXXAEIHHL 6588
            DE     DERTRLNTAIEHKETYTN+NSNSSI KKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSP+QNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCD+LRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENI DEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERS+LSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTK+KFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL
Sbjct: 1214 DEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSPRQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENIYDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERSKLSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL 2240
[Close]
BLAST of SMED30021641 vs. Planmine SMEST
Match: SMESG000040565.1 (SMESG000040565.1)

HSP 1 Score: 1851.25 bits (4794), Expect = 0.000e+0
Identity = 1144/1165 (98.20%), Postives = 1145/1165 (98.28%), Query Frame = 1 
Query:   88 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLXXXXXXXXXXXXXXVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTXXXXXXXXXXXCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQ-----------------DKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDXXXXXXXXXXXXXXVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKXXXXXXXXXXXXXXXXXXXXXKILRELNKTPIDSTPGHXXXXXXXXXXXXXXXXNSTDEASSYSEGKLEHATLIRSENLVKSEEIENXXXXXXXXXXXXXXXXFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETIXXXXXXXXXXQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGXXXXXXXXXXXXXXXXXXDEINPSNL-KGNERRENQLTIKSDKYHKKITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKGFQATSNEKVNLCSSQSLNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDESQHSY 3528
            MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHS NNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQ                 DKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNL KGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIK FQATSNEKVNLCSSQSLNTKSPILKSKKISSS+SSSSTSERSRSVSISQDESQHSY
Sbjct:    1 MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILVGIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETNAWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSYLENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSYNNNKARNAFFKSTNVLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIYDDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDNDTIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDENESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSERNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSKIPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSESPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKRKSENPQDFLINDDPSFQIYPTKDDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSSTPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIEEEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTGSEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLEHATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIEDIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKFSTSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSETINSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMSSSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQISLPTRKTKGSSSASESASSSMSISTSEDEINPSNLVKGNERRENQLTIKSDKYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKVFQATSNEKVNLCSSQSLNTKSPILKSKKISSSTSSSSTSERSRSVSISQDESQHSY 1165

HSP 2 Score: 1603.19 bits (4150), Expect = 0.000e+0
Identity = 1015/1027 (98.83%), Postives = 1020/1027 (99.32%), Query Frame = 1 
Query: 3508 DESQHSYDERTRLNTAIEHKETYTXXXXXXXITKKPSDKQNNLNGESDXXXXXXXXXXXXXXXXXISKESSPKQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDDLRDEVENXXXXXXXXXXXXXXXXXXXXAQLPEKKIFSENINDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEXXXXXXXXXXXXXXXXXEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYXXXXXXXXXXXXIDHDEKFNEIGNLKNQISRPKSKGAYLDNERXXXXXXXXXXXXXXXXXXXXXXXGETPYKNLEHREKFTXXXXXXXXITKKPLDIPMSLDNEMXXXXXXXXXXXXXXXXXXXXXXXXXXXHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRXXXXXXXXXXXXLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKRKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLXXXXXXXXXXXXXXXXFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVXXXXXXXXXXXQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPXXXXXXXXXXXXXXXXXAEIHHL 6588
            DE     DERTRLNTAIEHKETYTN+NSNSSI KKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSP+QNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCD+LRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENI DEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERS+LSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTK+KFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL
Sbjct: 1215 DEDPQELDERTRLNTAIEHKETYTNNNSNSSIAKKPSDKQNNLNGESDSSYSESSSTNKSYENTKISKESSPRQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESISITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLVDSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLSVQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRREKFCTPEEFDRITPCDNLRDEVENSDLENSMTSLSSSSESLSSSAQLPEKKIFSENIYDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSISTSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNKSKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSKGAYLDNERSKLSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNNSNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPIKSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIESDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINHRYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTSGSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTDLFTKKKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSDYNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPINLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASSDSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPSRTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESSEYSSTSDDDDSAEIHHL 2241
The following BLAST results are available for this feature:
BLAST of SMED30021641 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021641 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000040565.10.000e+098.28SMESG000040565.1[more]
SMESG000040565.10.000e+098.20SMESG000040565.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021641 ID=SMED30021641|Name=SMED30021641|organism=Schmidtea mediterranea sexual|type=transcript|length=6892bp
CTTACAATTGTATTTGACCTTCGATTGTATTAGTCTATTGTAGAAGTCTA
TTGATCCATTTTTTGATTACAACAGATCGAGAAAAACATGAGCTTGGAAA
TTAAAAGCTTTTTAGAGGAAAAGAAATCCCATGTCTGTTCAGCTCAGAGT
GATTCTGTCAGTTCATTGCAATTCGATAAAAAAGTTAAATCTCGTAGCTA
TAGTTCACAATTTACCCTCAGTGATCTGATTTTGGTTGGCATTGATAGGC
GAGAAGAAATGCGACCTATTGAACACAGTTTAACTGTAGAAGTGGACCTA
TGTACTGGAATTATTAGCGACATTAAATCTACTATTCATTCGAAATATCA
TACAATTATTCATTTGGATGAAATGGCCGAGACGAATGCATGGGTTAGAA
AACTGATTACCTACGACGTATTTGTGGATAAAGATGTTATGCATTCTATC
AGAGATGAAGCAATGGAACCTAATAAACTTTATTTACTTAAACACAAACA
CAAAGATCAGACTACAGAAAGCATGGCTGGAAGCTATTTAGAAAATGTTG
AGATTCCGCAATCTAAAAAATTACGAACAACCGCAGCTCAATTTAATCCT
ACTGAAAACGATAATAAATTTGTTGACAGATTTGTTCATTCATCTAACAA
CAATAAAGCTCGAAATGCGTTCTTTAAATCTACAAACGTTTTAAGAAACG
AATTAATTATTCGTACGGGAAACTTCATTGACAGACCAAATAATAATGAG
AACGAAAACTATTCTACTTCCTTATCAGTAGATCTTACTACTCACAAAAT
ACCACAAATTGTCAGCATTGAAGATCTAACAATTTACGACGATGATGATT
TAGAAACACCAAAACCAACTGAAAATCCAAAAACCGAGGAACCGGTTATG
GAGTTTAATTTAGTCGAAAATGAGAGAACAAATCTCGAAGTTGATGATAT
ACCTTTTGCAGAGGAATCTGAAATTATTGATAATGATACGATAGATGTTA
AAAGAAATACTCTATCCAAATCGTTGCAGTATTATTTGCCAGTATTTGAT
ACTAGTCAAGATGTCAAAAATACTGATGAAAACGAAGATTCGGAAAGCAA
TAGTAACTGCTCTCGAAGTGCTGTTACTACTGATGAAAATGAGTCGATGG
ATCAAACAGATAGACCTACATTATTAGATGAAATTGATTATGAATCTCTG
AATGCTGACGAATTCGACGAATCTATAACCGAAAACGAAAAGGATTCAAG
TGTAAAAGAAATTGAGAACTATTCACTTAGTTCCGAAAGAAATTCCTTTA
TTTTTGATAGATCATTCGACCTTGATGACATAATATGCCAAGAAAATCTA
GTAATTCATATCAATCAAGACACAGATGAAGAATGCATTAATCTCAATGA
AGTTCCTAAATTCCACCAATTAGAATCAGGATCAAAGATTCCAATTTCTC
AATTCGACATCATAAATGTCAAAAGAAACGTTTCACTCTCTCCAACATTT
CAACACCACAATTTCCATAAAAATAAAAGCATAGATTTTCCAAAAGATTT
TATTGAGCAAAGAAAAGAACACTTAGAAAAATCAGAGAGTCCAATAAACG
AAATTTATGTTTTCGATGAAAACGAAATCGAATCAAAAAATGATTTTTAC
AATTACGAAAAAAATTTAGAAGATTTAGCTTCCATTAATGAAGATGCACA
AACTTTTACTAAAACCAGATCCTTTAGCCTCAAAAGAAAGAGTGAAAATC
CGCAAGATAAAAAACCTTCAAACAATATTTACAGTGATAGGAAAGAAAAA
TTTCTGAATTCTGATTTGAATTCATCAATTCAATTTTTCAAACATGTTTC
AGAAGACAGTAAAATTCTCGGAGATACAAGAAGTTCAACGCCATCATCTG
AAAATGAAACTGAATCTGTAAAAAAAGATGAAACATCGACAAATTCATCA
GATGATTCCATGATAATTAAAGACGTTTCCAGTGATGGGGCTTATGAATT
TCGCAGACGTCCTCAAAAGATGAATTGTAAAATTGAAGAAGAAGATGAAA
ATATCGTAACAAGTGCTGATTCTAATGAAGATTTGTCAGATATAACAAAT
TTGACTGAAGAAATACAAATGAAAGAAAAAGATTACTCAAGCAGTGAAGA
TCTTTCTGTTTATTCTTCTTCATCTACTGTCACTGGCAGTGAAAAAATTT
TACGAGAATTAAATAAAACACCGATTGATTCAACACCAGGTCATTTCGAA
AGATTTTTGAAAGAAAGAGAAGAAAGAATTTTGAAAGAAAGAAATTCAAC
GGATGAAGCCTCATCATATTCTGAAGGGAAATTAGAACATGCAACATTAA
TTAGAAGTGAAAATTTGGTAAAATCTGAAGAAATTGAAAATACAAATGAT
TCCAGTCATACTGAAGACACATCTTCTTCATCTTCAGATTTTCCTCCACA
AATTAATGCTATTTTGCGGCAAGGCGAATCTATTGAGGATATTGCAAAAT
TTTTGATATACCCCAACAAAGAAAATAAAGGTTTAATAAGAACCTCAGGA
TTTGACAGTCAATTAAACGTTATTTATAAAGATGAGGACATTAACACTAA
TCTTCTCCAAAATAATAAAATCAATAAAAGAAAATTCTCAACATCTTCGG
AAGATGATACGTCATTAAAAGTGTCCTTTCCACAAAACAAATTCATTGAA
AGAACCGAAAAACTCACATCAGAACCAATATCAGATAAGAAATCTTTTCC
GAAACATAAATCGGATGACGAAAGCAGCAGTGAAACTATAAATTCAAATT
CAGATTTAAATTCAGATTCGCAGCAAGAGTTAACAAAAGAATTTGAATCA
CAAGTTGAAATGCCTAAAAAAGTATTTCCACCAGAAAAGCTCAGCAAGCA
ACATTCATTACCAATTATGAATACTGGTGAAATGTCTTCATCAACCGACA
GTGAGAGTAAAAATTCAATCTCTACTTCAACCGATGAAATTCAGAAAAAT
ATGGATAAAGACGAGAAAAAGAAACGAGCTAAATACATTGAAAAAGAAGA
AAAGTTTTCCAAAAATCCATTGGTTAAAAAGCAAATATCACTTCCTACTC
GAAAAACTAAAGGATCTTCATCGGCTAGTGAGAGTGCAAGTAGTAGCATG
TCAATTTCTACTTCTGAAGATGAAATAAATCCGTCTAATTTGAAAGGTAA
TGAAAGAAGAGAAAATCAGTTGACTATAAAATCAGATAAATATCATAAAA
AAATTACCGTTTCTAAAAAAATTTTATCAAACTTGTCTAAAAGCAGTGAA
AGCTCTCAGTCGTTTTCATCATCAGAAGATGAACCTCCTCCTCCGAAAGA
AATTAAAGGTTTTCAAGCAACATCAAATGAAAAGGTGAATTTGTGCAGCT
CTCAATCTCTCAATACGAAATCACCTATTTTAAAATCTAAAAAAATAAGT
TCATCGTCTTCATCAAGCAGTACGAGTGAAAGAAGTAGATCGGTCTCAAT
TTCACAGGATGAAAGTCAACATTCCTATGATGAACGAACAAGGTTAAATA
CAGCAATAGAACACAAGGAAACGTATACCAATAGTAACTCAAATTCAAGT
ATAACCAAGAAACCCTCAGATAAACAAAATAATCTGAATGGGGAAAGTGA
TTCAAGCTATAGTGAATCTTCATCAACTAATAAATCATACGAAAATACCA
AAATTTCAAAGGAGTCATCGCCTAAACAGAATAAAGATGATAACATAAAG
CCTGGAGTAATTACAAATGCAATTGTTTTGTCTCAAGAGGAGGATAATTC
TTACATATCTGATACTAATAAAAGCGATGAATCCATCTCAATTACCATTA
AAAATGATTCAATCAGACAAGAAAACAAGACCCCTTCAAATCTCTCAATT
GACCGACGGGAAAAGTTTACCAAGTTGAACTCCACCGAAATAACATCTGG
CTTCAAGCGATCTGCTTCAGTTCCTGATTATCTCGTGGATTCGAATAGCT
TTTCTGGTAAATCATCTACGGCTGATATAGCCCATCAAAATAGAGAAAGT
TTAGCTCGGAGTTTGAAAATCATTCCAACGGATTCTATTAACAATCTGAG
TTCAGACCGAAAAACTCATAGCTATGAACTGCTAAGTGTACAATTGAGAG
ACAACGTTATCACACGATTCATTGAAAGCCGCAGAAAGTACACAGATAAA
TTGAATTATTCTGATTCTAACGAACATCCTCAACAAAATGTGGAATACGA
TTCGAAAAAACCTTCACCCTTATCGATTGATAGGCGGGAAAAGTTTTGCA
CCCCGGAAGAATTTGACAGAATCACACCGTGCGATGATTTGAGAGATGAA
GTCGAAAATAGCGATTTGGAAAATAGTATGACAAGTTTATCCTCATCCTC
GGAATCTTTATCATCATCAGCTCAGTTACCAGAAAAAAAAATATTTTCAG
AAAATATAAATGATGAAGATAAAATGAACGAATTGTATATTGATAATGCC
CAAGTTAACCAAAAAGATAAATGTAAAAACGAGTTGGTAAACAAGAGTAA
AGACAGTCAGAATGAAGATGATAGTTATTCGATTAGTACTAGCGATTCTT
CAACTGGGCTTTCTGATGAAGAGAACGACATTCGTAACTTTACTCCAACA
ACTAATAAAAACAAACAATCATATTCAATAGACAGATTAGAAAAATTTAC
ACATCAAAATCACTTAGAAAATCATAAAGTTAACAAATCTAAACCTCAAG
AAATAAATAATACGTCCGAATCCTCAGAATATGATAATTTGTTAGATAAA
AACAAGAACACAAAAAATATTGATCACGACGAAAAGTTTAATGAAATAGG
GAACCTGAAAAATCAAATATCAAGACCAAAATCGAAAGGTGCATATTTGG
ATAATGAACGTTCAGAACTCTCATCAGATTTTTCAAACTCTTCAAACTCA
GAAAATGAATCTGCTTCAGATGATGATGACGGTGAAACCCCATATAAAAA
CCTCGAACACCGGGAAAAGTTTACTAATAATAATAATTCAAATTCGAATA
TAACCAAAAAACCATTAGATATCCCAATGAGTCTGGATAACGAGATGGAT
TCGAGTTATAGCAAGTCTTCCTCTACAAATAATAGCAAAAGTTCAACTAA
GTCTGGAAAAATTTCAACGGATAAAGGCCATCCAATAAAATCAGAAGAAA
TTGAAAGATACGAAAAAGATATCAATCAAAATGCTAAACGCTTAAAATAC
GAACAATCGAAGGAAAAATCTGACAGCACAGATGAGGATGTTTCTCTGTC
TTTAACCAGTTTGCCTAAAGATAACAAAGAAATAGAATCAGATCATTCTT
CTCATCGTTTGAATACAAAGGACATCGAAATAATTGTCGTTGATAAAGTA
AATCATGAATCAAAATCAAATGATGCAGATCAGAGCATTTCAATAAGTAC
AACTGCTTCTGTTTCCAAAGATCAAAAGATAAACCACAGATATGAGAAAA
ATGACAAATATGTTTCGAGAAGCTGTCAAACTTTGCCTTACAACAGAATA
CAAATAATTCCAATCAAACAAAAATCCAAAAGTCTTGATAAGCCATTTCT
TCATGGTTCTTTACCTATATTGACTCAACATACGTCGGGATCTATTGGCA
ATATTGTTGAAAGACGTTATCACGAATTCACTGAGAATTGGTCCAGACAG
TCACCAATTGGATCAAATAATTCAAAGGAAAATATGCAACCCAAAGTAGT
TGATGATGAGCATATTTCCTCAGTTAAGAATACTGATTTATTTACTAAAA
GGAAATTTACTGAACCTTTAACAACTCGGCCTAGACCTGTCCCTTCATAT
TTGAGTCCAGTAAATGCTTTTCCTTATGTACCAACCGATCCGGAATTCAG
TTCAGCAGATTCCTTGGTGAATGATTACAGTTCAGATTATAATGTCAACG
AAATTATACCTAAATATAAATCTTTACCAGACTTTGTCAAATCTTTGTCT
ACTACTAGTCTTCCTAAACAACCATTGAAATCAAAAACAGAGATAAAAAA
GCCTATTGTTAAAAAGAAATCACCGTTTCAACCAATTAATCTAGATTATG
GGGCTGTAGAAAATAAAAATATTCCAAGAAATAGATTCAAAAAGAAGACA
TCTCTAACATCGGTTACAACTGACAGCAGTTACCTTGAAAAACCTATCTT
GAAAGACAAAGAAACATTCAATAATTATGCATCATCAGACAGCTTAGGTT
CTTTAACTTCTCAGAATATTGGAACAACCCATCCTAAAGCACGAATTCAA
AATAATACAATAAATCTTGATAATGTTTCATCAACTGACTCGTCTTCTGA
TTCTGATACGCAAATCGAATACCAAACGCCGCCTTCGAGAACGATGCCGT
ATTTACCGAAAGTAAACTCTTTAATTAACAACAAAAACAAAAACTCGGGA
CTTCCTGTTGCAAATGGTAAACAAGAACATATTAAAAAAAGTAATAGTTT
ACCGCAAAAACGAATTCCTTCTTCCTCCGAATCTTCAGAATATTCTAGTA
CTTCTGATGACGATGATTCAGCGGAAATTCATCATTTATAAAATAAAACT
TTTGCGAGATAGAGCAATGAGAATTATACACATTTACACAAATAAAGCTT
TAATTTTTTGATTATATATTTTAAAACATTTAAAATGTTTGAATTTACCT
TTTTTAATTATTAAGATTTGATTTCATATAAATGAACTCAGAACTTTTAT
TTCTGATGTCGATACAAGAATGAATTTTTATCTATTAAAATATATTTCAT
TGTTGATTTTAATCGTTTTATCAAAGTCAAAGACGTTAAAAATATTGTGT
TGATTGTACAGGAGAGCCAACGGAATAGAATCACATTTGTTT
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protein sequence of SMED30021641-orf-1

>SMED30021641-orf-1 ID=SMED30021641-orf-1|Name=SMED30021641-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=2168bp
MSLEIKSFLEEKKSHVCSAQSDSVSSLQFDKKVKSRSYSSQFTLSDLILV
GIDRREEMRPIEHSLTVEVDLCTGIISDIKSTIHSKYHTIIHLDEMAETN
AWVRKLITYDVFVDKDVMHSIRDEAMEPNKLYLLKHKHKDQTTESMAGSY
LENVEIPQSKKLRTTAAQFNPTENDNKFVDRFVHSSNNNKARNAFFKSTN
VLRNELIIRTGNFIDRPNNNENENYSTSLSVDLTTHKIPQIVSIEDLTIY
DDDDLETPKPTENPKTEEPVMEFNLVENERTNLEVDDIPFAEESEIIDND
TIDVKRNTLSKSLQYYLPVFDTSQDVKNTDENEDSESNSNCSRSAVTTDE
NESMDQTDRPTLLDEIDYESLNADEFDESITENEKDSSVKEIENYSLSSE
RNSFIFDRSFDLDDIICQENLVIHINQDTDEECINLNEVPKFHQLESGSK
IPISQFDIINVKRNVSLSPTFQHHNFHKNKSIDFPKDFIEQRKEHLEKSE
SPINEIYVFDENEIESKNDFYNYEKNLEDLASINEDAQTFTKTRSFSLKR
KSENPQDKKPSNNIYSDRKEKFLNSDLNSSIQFFKHVSEDSKILGDTRSS
TPSSENETESVKKDETSTNSSDDSMIIKDVSSDGAYEFRRRPQKMNCKIE
EEDENIVTSADSNEDLSDITNLTEEIQMKEKDYSSSEDLSVYSSSSTVTG
SEKILRELNKTPIDSTPGHFERFLKEREERILKERNSTDEASSYSEGKLE
HATLIRSENLVKSEEIENTNDSSHTEDTSSSSSDFPPQINAILRQGESIE
DIAKFLIYPNKENKGLIRTSGFDSQLNVIYKDEDINTNLLQNNKINKRKF
STSSEDDTSLKVSFPQNKFIERTEKLTSEPISDKKSFPKHKSDDESSSET
INSNSDLNSDSQQELTKEFESQVEMPKKVFPPEKLSKQHSLPIMNTGEMS
SSTDSESKNSISTSTDEIQKNMDKDEKKKRAKYIEKEEKFSKNPLVKKQI
SLPTRKTKGSSSASESASSSMSISTSEDEINPSNLKGNERRENQLTIKSD
KYHKKITVSKKILSNLSKSSESSQSFSSSEDEPPPPKEIKGFQATSNEKV
NLCSSQSLNTKSPILKSKKISSSSSSSSTSERSRSVSISQDESQHSYDER
TRLNTAIEHKETYTNSNSNSSITKKPSDKQNNLNGESDSSYSESSSTNKS
YENTKISKESSPKQNKDDNIKPGVITNAIVLSQEEDNSYISDTNKSDESI
SITIKNDSIRQENKTPSNLSIDRREKFTKLNSTEITSGFKRSASVPDYLV
DSNSFSGKSSTADIAHQNRESLARSLKIIPTDSINNLSSDRKTHSYELLS
VQLRDNVITRFIESRRKYTDKLNYSDSNEHPQQNVEYDSKKPSPLSIDRR
EKFCTPEEFDRITPCDDLRDEVENSDLENSMTSLSSSSESLSSSAQLPEK
KIFSENINDEDKMNELYIDNAQVNQKDKCKNELVNKSKDSQNEDDSYSIS
TSDSSTGLSDEENDIRNFTPTTNKNKQSYSIDRLEKFTHQNHLENHKVNK
SKPQEINNTSESSEYDNLLDKNKNTKNIDHDEKFNEIGNLKNQISRPKSK
GAYLDNERSELSSDFSNSSNSENESASDDDDGETPYKNLEHREKFTNNNN
SNSNITKKPLDIPMSLDNEMDSSYSKSSSTNNSKSSTKSGKISTDKGHPI
KSEEIERYEKDINQNAKRLKYEQSKEKSDSTDEDVSLSLTSLPKDNKEIE
SDHSSHRLNTKDIEIIVVDKVNHESKSNDADQSISISTTASVSKDQKINH
RYEKNDKYVSRSCQTLPYNRIQIIPIKQKSKSLDKPFLHGSLPILTQHTS
GSIGNIVERRYHEFTENWSRQSPIGSNNSKENMQPKVVDDEHISSVKNTD
LFTKRKFTEPLTTRPRPVPSYLSPVNAFPYVPTDPEFSSADSLVNDYSSD
YNVNEIIPKYKSLPDFVKSLSTTSLPKQPLKSKTEIKKPIVKKKSPFQPI
NLDYGAVENKNIPRNRFKKKTSLTSVTTDSSYLEKPILKDKETFNNYASS
DSLGSLTSQNIGTTHPKARIQNNTINLDNVSSTDSSSDSDTQIEYQTPPS
RTMPYLPKVNSLINNKNKNSGLPVANGKQEHIKKSNSLPQKRIPSSSESS
EYSSTSDDDDSAEIHHL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000018Category 4 cell
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000101muscle cell
PLANA:0000140anterior region of the whole animal
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 669..689
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 872..897
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2058..2105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 997..1032
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1372..1393
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1541..1634
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1485..1529
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1375..1390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 939..967
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1426..1447
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1060..1081
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1103..1222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1694..1733
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1158..1208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2121..2167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1494..1528
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 593..634
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 756..786
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1670..1693
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1609..1623
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1103..1142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 544..567
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1143..1157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 2121..2152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 756..772
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1427..1447
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 968..994
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1033..1057
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..567
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 871..1089
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1670..1756
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 898..919
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1566..1587