Polysacc_synt_4 domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021606 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Match: PBDC1 (polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28790]) HSP 1 Score: 137.502 bits (345), Expect = 2.174e-40 Identity = 60/127 (47.24%), Postives = 93/127 (73.23%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE+Y ND IE++WAM+A + AE++Y L+ ++ D ++LT D++I++ F + F L++DV+ +++K+ AK KWR +C++F+G+V DFN+ +LLRLD + Y EENT PR+QF AIEIARNR Sbjct: 26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Match: PBDC1 (polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28790]) HSP 1 Score: 63.1586 bits (152), Expect = 4.384e-12 Identity = 28/74 (37.84%), Postives = 52/74 (70.27%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAK 297 AE+Y ND IE++WAM+A + AE++Y L+ ++ D ++LT D++I++ F + F L++DV+ +++K+ AK Sbjct: 26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAK 98
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Celegans
Match: Y54E5A.5 (pep chromosome:WBcel235:I:14707059:14707875:-1 gene:WBGene00013200.1 transcript:Y54E5A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y54E5A.5) HSP 1 Score: 118.627 bits (296), Expect = 1.865e-34 Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARN 453 +A+ YVND+SIE++WA+KA +++E+H NL+ D +RL + I F FPDL V+ ++ +K+ AK WRE+C +F +V D++ +L+R+ + K Y ENT +VPR+ +LAIE+ARN Sbjct: 6 DADKYVNDESIEMAWAIKAGERSEVHMNLIMRC-DTRVLRLNKHQDAILAAFRSSFPDLNVEEVTTSLLKDGGAKETWREFCEQFKDIVDDYSMGTLMRIHASKAYSPENTVVVPRIIYLAIEMARN 131
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Match: CG7519 (gene:FBgn0037087 transcript:FBtr0078353) HSP 1 Score: 108.227 bits (269), Expect = 3.255e-30 Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE + ND +E WA KA + AE+H+NL+ ++ S+++LT D++I+ F + FPDL V +++D +K+ AK KWR++ +F+ L D+++ +L+R D+ + + +N+ V RVQFLAIEIARNR Sbjct: 14 AEEFGNDTLVEEMWAAKALEHAEVHFNLITSVH-PSQLKLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKL-DDYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNR 138
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Match: CG7519 (gene:FBgn0037087 transcript:FBtr0332711) HSP 1 Score: 100.138 bits (248), Expect = 4.023e-27 Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE + ND +E WA KA + AE+H+NL +LT D++I+ F + FPDL V +++D +K+ AK KWR++ +F+ L D+++ +L+R D+ + + +N+ V RVQFLAIEIARNR Sbjct: 14 AEEFGNDTLVEEMWAAKALEHAEVHFNL----------KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKL-DDYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNR 129
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]) HSP 1 Score: 135.191 bits (339), Expect = 1.242e-40 Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D EI+ +F E FPDL + ++ + +K+ +AK WR +C +F+G+V DFN+ +LLRLD +K Y EENT R+QF AIEIARNR Sbjct: 16 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 141
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]) HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40 Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D EI+ +F E FPDL + ++ + +K+ +AK WR +C +F+G+V DFN+ +LLRLD +K Y EENT R+QF AIEIARNR Sbjct: 26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]) HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40 Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D EI+ +F E FPDL + ++ + +K+ +AK WR +C +F+G+V DFN+ +LLRLD +K Y EENT R+QF AIEIARNR Sbjct: 26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]) HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40 Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D EI+ +F E FPDL + ++ + +K+ +AK WR +C +F+G+V DFN+ +LLRLD +K Y EENT R+QF AIEIARNR Sbjct: 26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:549118]) HSP 1 Score: 136.346 bits (342), Expect = 8.259e-41 Identity = 62/127 (48.82%), Postives = 91/127 (71.65%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND ++E+ WAMKA + AE+++NL+ ++ D ++LT D+ I+ F E FP+L++ V+ +++K+P AK KWR +CM+F+ V DFN+ +LLRLDS K Y EEN+ R+QF AIEIARNR Sbjct: 30 AEAYGNDPNLEMMWAMKAYQHAEVYFNLISSV-DPRILKLTRTDDVIYKTFREEFPELQIGVLDPEEMKSPAAKEKWRPFCMQFETQVEDFNYGTLLRLDSSKDYTEENSIFATRIQFYAIEIARNR 155
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:549118]) HSP 1 Score: 126.331 bits (316), Expect = 4.648e-37 Identity = 57/118 (48.31%), Postives = 85/118 (72.03%), Query Frame = 1 Query: 103 IEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 +E+ WAMKA + AE+++NL+ ++ D ++LT D+ I+ F E FP+L++ V+ +++K+P AK KWR +CM+F+ V DFN+ +LLRLDS K Y EEN+ R+QF AIEIARNR Sbjct: 29 LEMMWAMKAYQHAEVYFNLISSV-DPRILKLTRTDDVIYKTFREEFPELQIGVLDPEEMKSPAAKEKWRPFCMQFETQVEDFNYGTLLRLDSSKDYTEENSIFATRIQFYAIEIARNR 145
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Match: Pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:MGI Symbol;Acc:MGI:1914933]) HSP 1 Score: 137.887 bits (346), Expect = 3.067e-41 Identity = 65/148 (43.92%), Postives = 100/148 (67.57%), Query Frame = 1 Query: 13 VCLNILSLFHIKN*IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 V LS+ H S P E+Y ND IE++WA++A + AE++Y L+ ++ D ++LT D++I++ F E+F L+VDV+ +++K+ AK KWR +C++F+G+V D+N+ +LLRLD + Y EENT PR+QF AIEIARNR Sbjct: 11 VSGEALSIAHA----LSHPP--ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Match: Pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:MGI Symbol;Acc:MGI:1914933]) HSP 1 Score: 110.923 bits (276), Expect = 1.963e-31 Identity = 47/109 (43.12%), Postives = 80/109 (73.39%), Query Frame = 1 Query: 79 ENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENT 405 E+Y ND IE++WA++A + AE++Y L+ ++ D ++LT D++I++ F E+F L+VDV+ +++K+ AK KWR +C++F+G+V D+N+ +LLRLD + Y EENT Sbjct: 27 ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENT 134
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9D0B6|PBDC1_MOUSE (Protein PBDC1 OS=Mus musculus OX=10090 GN=Pbdc1 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 2.145e-40 Identity = 65/148 (43.92%), Postives = 100/148 (67.57%), Query Frame = 1 Query: 13 VCLNILSLFHIKN*IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 V LS+ H S P E+Y ND IE++WA++A + AE++Y L+ ++ D ++LT D++I++ F E+F L+VDV+ +++K+ AK KWR +C++F+G+V D+N+ +LLRLD + Y EENT PR+QF AIEIARNR Sbjct: 11 VSGEALSIAHA----LSHPP--ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9BVG4|PBDC1_HUMAN (Protein PBDC1 OS=Homo sapiens OX=9606 GN=PBDC1 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.044e-39 Identity = 60/127 (47.24%), Postives = 93/127 (73.23%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE+Y ND IE++WAM+A + AE++Y L+ ++ D ++LT D++I++ F + F L++DV+ +++K+ AK KWR +C++F+G+V DFN+ +LLRLD + Y EENT PR+QF AIEIARNR Sbjct: 26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|O59727|YHX7_SCHPO (Protein PBDC1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC3E7.07c PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.176e-29 Identity = 55/138 (39.86%), Postives = 88/138 (63.77%), Query Frame = 1 Query: 55 IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 + S +AEN N IE+ +A+KA +QA+I+++LL+ ++ S+++LT D+EIF FP+ K ++ D++K+ KA WR + M ++ V D+NF +LLR+ + Y++E T VPR+QFLA EIARNR Sbjct: 1 MLSTKIDAENAENAAEIEMQFAVKAVEQAQIYWSLLE-MRKGSELKLTKYDDEIFEDLINTFPEFKDPKTASFVNEDEMKSAKGKAAWRPFLMRYEKKVDDYNFGTLLRIKNTDEYEQETTIFVPRMQFLAYEIARNR 137
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q08971|YP225_YEAST (Protein PBDC1 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPL225W PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.464e-24 Identity = 52/132 (39.39%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 NAE N + IE +A+ A +QAE ++ LL ++ SK+RLT D+EI+ F E FP+ K V + +++K +AK +WR++ F+ + D+NF +LLR D+ Y + T V R+QF A EIARN+ Sbjct: 5 NAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPG-SKLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNK 135
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A4E0RKN5 (DUF757 domain-containing protein OS=Fasciola hepatica OX=6192 GN=D915_001248 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.127e-46 Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1 Query: 64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 +D A NYVND +IEI WA+K+ + AE H+ LL ++ D +RLT D+EI+ F +FPDLKVDVIS D++K+ ++KA WR +C F+ V DFN+A+L RLD+ K YDEENT IVPR+QFLA+EIARNR Sbjct: 54 LDSEARNYVNDPNIEIGWAIKSFEHAEAHFRLLCSVDDAKNLRLTGLDDEIYEEFTNLFPDLKVDVISEDELKSAESKANWRVFCNRFEDKVDDFNWATLFRLDASKGYDEENTCIVPRIQFLALEIARNR 184
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A0R3T973 (Polysacc_synt_4 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3610 PE=4 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.654e-44 Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 1 Query: 64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 +D NAENYVN++S+E+SWA+ A AE+HY++L A+ D +RL+ D++I+ F + FPD VD + DDIK+ + K WRE+C F+G+V DFN +LLRLDS + Y E NT IVPRVQ+LAIEIARNR Sbjct: 2 VDTNAENYVNEESVELSWAIAAYDHAEVHYDILSAVPDAKILRLSPFDDKIYAAFCKAFPDFDVDRFTEDDIKSDEKKVLWREFCDSFEGVVDDFNRGTLLRLDSSQEYSETNTCIVPRVQYLAIEIARNR 132
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A4S2L935 (Polysacc_synt_4 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009383 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 9.822e-43 Identity = 63/131 (48.09%), Postives = 98/131 (74.81%), Query Frame = 1 Query: 64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 +D + +NYVND +IE+ WA+++ + AE H+ LL ++ D + +RLT D++I+ F ++FPDL V ++S D +K+P++KA WR++C +F + D+N A+L RLD+ K YDE NT +VPR+QFLA+EIARNR Sbjct: 2 VDVDVKNYVNDPNIELQWAIRSYEHAETHFRLLCSVSDLAGLRLTRMDDQIYEEFGKVFPDLDVSILSEDQLKSPESKALWRDFCNKFSEELEDYNLATLFRLDASKAYDEHNTCVVPRIQFLALEIARNR 132
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A5K3F1P9 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.439e-42 Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1 Query: 64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 MD N +Y ND +E SWA+ A AE HYNLL + D +RL+ D +I+ F EMFP + VD I+ DDIK+ K WR +C +F+ + D+NFA+LLRLDS + YDE+NT +VPR+QFLAIEIARNR Sbjct: 1 MDLNPYSYTNDAVLERSWAVAAYGHAETHYNLLCVVPDARYLRLSLIDEKIYGAFREMFPGMNVDCITEDDIKSDQQKELWRSFCTKFEKIFGDYNFATLLRLDSARGYDEDNTCVVPRIQFLAIEIARNR 131
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A068WIE6 (Polysacc_synt_4 domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EgrG_001013000 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.012e-41 Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1 Query: 82 NYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 +Y ND +E+SWAM A AE HYN+L A+ D +RL+ D+ I F+E FP L VD + DDIK+ + K WR +C EFDG+V D+N +LLRLDS YDE+NT IVPRVQFLAIEIARNR Sbjct: 8 DYQNDTLLEMSWAMAAYDHAETHYNILCAVPDARILRLSAVDDRICKTFSETFPHLNVDCFTEDDIKSEEQKELWRSFCNEFDGVVEDYNRGTLLRLDSSGGYDEKNTCIVPRVQFLAIEIARNR 132
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Cavefish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]) HSP 1 Score: 126.716 bits (317), Expect = 3.944e-37 Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D+ I+ +F E F DL + + + +K+P+AK KWR +C F+ LV DFN+ +LLRLD K Y EENT R+QF A+EIARNR Sbjct: 40 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDDMIYTKFREDFSDLDIKNLDPELLKSPEAKEKWRPFCNHFEHLVEDFNYGTLLRLDCEKDYTEENTIFATRIQFFAVEIARNR 165
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Yeast
Match: YPL225W_mRNA (Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006146]) HSP 1 Score: 95.9005 bits (237), Expect = 2.108e-26 Identity = 52/132 (39.39%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 NAE N + IE +A+ A +QAE ++ LL ++ SK+RLT D+EI+ F E FP+ K V + +++K +AK +WR++ F+ + D+NF +LLR D+ Y + T V R+QF A EIARN+ Sbjct: 5 NAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPG-SKLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNK 135
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Match: EDO48817 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIJ4]) HSP 1 Score: 103.219 bits (256), Expect = 4.689e-29 Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 103 IEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 459 IE+ WA+KA E H ++ A D + + T+ D++I+ +++ F LK+D+I+ DD+K+ +A+ W+ +C F + +NF +LLRLD K Y EENT V +++F AIEIARNR Sbjct: 1 IELDWAVKAHHHGEAHMKIISAF-DPATLNFTSYDDDIYRQYSRCFKGLKIDIINPDDLKSDEARILWKPFCEMFRDRIPHYNFGTLLRLDCNKGYTEENTIFVTKIEFYAIEIARNRQ 118
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Match: EDO29020 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4U3]) HSP 1 Score: 42.3578 bits (98), Expect = 6.407e-6 Identity = 18/65 (27.69%), Postives = 33/65 (50.77%), Query Frame = 1 Query: 70 PNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVI 264 P A ++ IE+ WA KA E H ++ A D + + T+ D++I+ +++ F LK + Sbjct: 15 PGAGGLTQEEQIELDWAAKAHHHGEAHMKIISAF-DPATLNFTSYDDDIYRQYSRCFKGLKGPTL 78
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Medaka
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:101172868]) HSP 1 Score: 131.339 bits (329), Expect = 4.416e-39 Identity = 62/127 (48.82%), Postives = 87/127 (68.50%), Query Frame = 1 Query: 76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456 AE Y ND +E+ WAMKA AE+++NL+ ++ D ++LT D+ I++ F E F DL V + +D+K+ AK +WR +C +F+GLV DFN+ +LLRLD +K Y EEN+ RVQF AIEIARNR Sbjct: 26 AEAYGNDPRLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKLDDRIYSSFRETFKDLDVRQLKEEDLKSDQAKERWRPFCNQFEGLVEDFNYGTLLRLDCQKGYSEENSIFSTRVQFFAIEIARNR 151
BLAST of Polysacc_synt_4 domain-containing protein vs. Planmine SMEST
Match: SMESG000051316.1 (SMESG000051316.1) HSP 1 Score: 273.478 bits (698), Expect = 8.761e-96 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 Query: 64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 459 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS Sbjct: 1 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 132 The following BLAST results are available for this feature:
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 2
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 4
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Polysacc_synt_4 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021606 ID=SMED30021606|Name=Polysacc_synt_4 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=500bpback to top protein sequence of SMED30021606-orf-1 >SMED30021606-orf-1 ID=SMED30021606-orf-1|Name=SMED30021606-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=139bp MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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