Polysacc_synt_4 domain-containing protein

Overview
NamePolysacc_synt_4 domain-containing protein
Smed IDSMED30021606
Length (bp)500
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Polysacc_synt_4 domain-containing protein (SMED30021606) t-SNE clustered cells

Violin plots show distribution of expression levels for Polysacc_synt_4 domain-containing protein (SMED30021606) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Polysacc_synt_4 domain-containing protein (SMED30021606) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Polysacc_synt_4 domain-containing protein (SMED30021606) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021606

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021606h1SMcG0009531 SmedASXL_019281SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30021606h1SMcG0009531 dd_Smed_v4_3346_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021606h1SMcG0009531 dd_Smed_v4_3346_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021606h1SMcG0009531 dd_Smed_v4_3346_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
body wall musculatureSMED30021606h1SMcG0009531 dd_Smed_v4_3346_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 2 cellSMED30021606h1SMcG0009531 dd_Smed_v4_3346_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Match: PBDC1 (polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28790])

HSP 1 Score: 137.502 bits (345), Expect = 2.174e-40
Identity = 60/127 (47.24%), Postives = 93/127 (73.23%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE+Y ND  IE++WAM+A + AE++Y L+ ++ D   ++LT  D++I++ F + F  L++DV+  +++K+  AK KWR +C++F+G+V DFN+ +LLRLD  + Y EENT   PR+QF AIEIARNR
Sbjct:   26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Match: PBDC1 (polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28790])

HSP 1 Score: 63.1586 bits (152), Expect = 4.384e-12
Identity = 28/74 (37.84%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAK 297
            AE+Y ND  IE++WAM+A + AE++Y L+ ++ D   ++LT  D++I++ F + F  L++DV+  +++K+  AK
Sbjct:   26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAK 98
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Celegans
Match: Y54E5A.5 (pep chromosome:WBcel235:I:14707059:14707875:-1 gene:WBGene00013200.1 transcript:Y54E5A.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y54E5A.5)

HSP 1 Score: 118.627 bits (296), Expect = 1.865e-34
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:   73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARN 453
            +A+ YVND+SIE++WA+KA +++E+H NL+    D   +RL    + I   F   FPDL V+ ++   +K+  AK  WRE+C +F  +V D++  +L+R+ + K Y  ENT +VPR+ +LAIE+ARN
Sbjct:    6 DADKYVNDESIEMAWAIKAGERSEVHMNLIMRC-DTRVLRLNKHQDAILAAFRSSFPDLNVEEVTTSLLKDGGAKETWREFCEQFKDIVDDYSMGTLMRIHASKAYSPENTVVVPRIIYLAIEMARN 131
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Match: CG7519 (gene:FBgn0037087 transcript:FBtr0078353)

HSP 1 Score: 108.227 bits (269), Expect = 3.255e-30
Identity = 53/127 (41.73%), Postives = 87/127 (68.50%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE + ND  +E  WA KA + AE+H+NL+ ++   S+++LT  D++I+  F + FPDL V  +++D +K+  AK KWR++  +F+ L  D+++ +L+R D+ + +  +N+  V RVQFLAIEIARNR
Sbjct:   14 AEEFGNDTLVEEMWAAKALEHAEVHFNLITSVH-PSQLKLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKL-DDYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNR 138
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Match: CG7519 (gene:FBgn0037087 transcript:FBtr0332711)

HSP 1 Score: 100.138 bits (248), Expect = 4.023e-27
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE + ND  +E  WA KA + AE+H+NL          +LT  D++I+  F + FPDL V  +++D +K+  AK KWR++  +F+ L  D+++ +L+R D+ + +  +N+  V RVQFLAIEIARNR
Sbjct:   14 AEEFGNDTLVEEMWAAKALEHAEVHFNL----------KLTPYDDQIYATFRQDFPDLHVGRLTDDILKSATAKLKWRQFAEKFNKL-DDYSYGTLMRADASREFSPDNSIFVFRVQFLAIEIARNR 129
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459])

HSP 1 Score: 135.191 bits (339), Expect = 1.242e-40
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D EI+ +F E FPDL + ++  + +K+ +AK  WR +C +F+G+V DFN+ +LLRLD +K Y EENT    R+QF AIEIARNR
Sbjct:   16 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 141
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459])

HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D EI+ +F E FPDL + ++  + +K+ +AK  WR +C +F+G+V DFN+ +LLRLD +K Y EENT    R+QF AIEIARNR
Sbjct:   26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459])

HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D EI+ +F E FPDL + ++  + +K+ +AK  WR +C +F+G+V DFN+ +LLRLD +K Y EENT    R+QF AIEIARNR
Sbjct:   26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459])

HSP 1 Score: 135.191 bits (339), Expect = 1.612e-40
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D EI+ +F E FPDL + ++  + +K+ +AK  WR +C +F+G+V DFN+ +LLRLD +K Y EENT    R+QF AIEIARNR
Sbjct:   26 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDEEIYTKFREAFPDLNIQLLDPELLKSAEAKENWRPFCNQFEGIVEDFNYGTLLRLDCQKDYTEENTIFATRIQFYAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:549118])

HSP 1 Score: 136.346 bits (342), Expect = 8.259e-41
Identity = 62/127 (48.82%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND ++E+ WAMKA + AE+++NL+ ++ D   ++LT  D+ I+  F E FP+L++ V+  +++K+P AK KWR +CM+F+  V DFN+ +LLRLDS K Y EEN+    R+QF AIEIARNR
Sbjct:   30 AEAYGNDPNLEMMWAMKAYQHAEVYFNLISSV-DPRILKLTRTDDVIYKTFREEFPELQIGVLDPEEMKSPAAKEKWRPFCMQFETQVEDFNYGTLLRLDSSKDYTEENSIFATRIQFYAIEIARNR 155
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:549118])

HSP 1 Score: 126.331 bits (316), Expect = 4.648e-37
Identity = 57/118 (48.31%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:  103 IEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            +E+ WAMKA + AE+++NL+ ++ D   ++LT  D+ I+  F E FP+L++ V+  +++K+P AK KWR +CM+F+  V DFN+ +LLRLDS K Y EEN+    R+QF AIEIARNR
Sbjct:   29 LEMMWAMKAYQHAEVYFNLISSV-DPRILKLTRTDDVIYKTFREEFPELQIGVLDPEEMKSPAAKEKWRPFCMQFETQVEDFNYGTLLRLDSSKDYTEENSIFATRIQFYAIEIARNR 145
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Match: Pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:MGI Symbol;Acc:MGI:1914933])

HSP 1 Score: 137.887 bits (346), Expect = 3.067e-41
Identity = 65/148 (43.92%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:   13 VCLNILSLFHIKN*IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            V    LS+ H      S  P  E+Y ND  IE++WA++A + AE++Y L+ ++ D   ++LT  D++I++ F E+F  L+VDV+  +++K+  AK KWR +C++F+G+V D+N+ +LLRLD  + Y EENT   PR+QF AIEIARNR
Sbjct:   11 VSGEALSIAHA----LSHPP--ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Match: Pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:MGI Symbol;Acc:MGI:1914933])

HSP 1 Score: 110.923 bits (276), Expect = 1.963e-31
Identity = 47/109 (43.12%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   79 ENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENT 405
            E+Y ND  IE++WA++A + AE++Y L+ ++ D   ++LT  D++I++ F E+F  L+VDV+  +++K+  AK KWR +C++F+G+V D+N+ +LLRLD  + Y EENT
Sbjct:   27 ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENT 134
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9D0B6|PBDC1_MOUSE (Protein PBDC1 OS=Mus musculus OX=10090 GN=Pbdc1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.145e-40
Identity = 65/148 (43.92%), Postives = 100/148 (67.57%), Query Frame = 1 
Query:   13 VCLNILSLFHIKN*IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            V    LS+ H      S  P  E+Y ND  IE++WA++A + AE++Y L+ ++ D   ++LT  D++I++ F E+F  L+VDV+  +++K+  AK KWR +C++F+G+V D+N+ +LLRLD  + Y EENT   PR+QF AIEIARNR
Sbjct:   11 VSGEALSIAHA----LSHPP--ESYGNDPDIEMAWAIRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9BVG4|PBDC1_HUMAN (Protein PBDC1 OS=Homo sapiens OX=9606 GN=PBDC1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.044e-39
Identity = 60/127 (47.24%), Postives = 93/127 (73.23%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE+Y ND  IE++WAM+A + AE++Y L+ ++ D   ++LT  D++I++ F + F  L++DV+  +++K+  AK KWR +C++F+G+V DFN+ +LLRLD  + Y EENT   PR+QF AIEIARNR
Sbjct:   26 AESYGNDPDIEMAWAMRAMQHAEVYYKLISSV-DPQFLKLTKVDDQIYSEFRKNFETLRIDVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|O59727|YHX7_SCHPO (Protein PBDC1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC3E7.07c PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.176e-29
Identity = 55/138 (39.86%), Postives = 88/138 (63.77%), Query Frame = 1 
Query:   55 IFSMDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            + S   +AEN  N   IE+ +A+KA +QA+I+++LL+ ++  S+++LT  D+EIF      FP+ K       ++ D++K+   KA WR + M ++  V D+NF +LLR+ +   Y++E T  VPR+QFLA EIARNR
Sbjct:    1 MLSTKIDAENAENAAEIEMQFAVKAVEQAQIYWSLLE-MRKGSELKLTKYDDEIFEDLINTFPEFKDPKTASFVNEDEMKSAKGKAAWRPFLMRYEKKVDDYNFGTLLRIKNTDEYEQETTIFVPRMQFLAYEIARNR 137
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Match: sp|Q08971|YP225_YEAST (Protein PBDC1 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPL225W PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.464e-24
Identity = 52/132 (39.39%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:   73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            NAE   N + IE  +A+ A +QAE ++ LL ++   SK+RLT  D+EI+  F E FP+ K    V   + +++K  +AK +WR++   F+  + D+NF +LLR D+   Y +  T  V R+QF A EIARN+
Sbjct:    5 NAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPG-SKLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNK 135
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A4E0RKN5 (DUF757 domain-containing protein OS=Fasciola hepatica OX=6192 GN=D915_001248 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.127e-46
Identity = 74/131 (56.49%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:   64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            +D  A NYVND +IEI WA+K+ + AE H+ LL ++ D   +RLT  D+EI+  F  +FPDLKVDVIS D++K+ ++KA WR +C  F+  V DFN+A+L RLD+ K YDEENT IVPR+QFLA+EIARNR
Sbjct:   54 LDSEARNYVNDPNIEIGWAIKSFEHAEAHFRLLCSVDDAKNLRLTGLDDEIYEEFTNLFPDLKVDVISEDELKSAESKANWRVFCNRFEDKVDDFNWATLFRLDASKGYDEENTCIVPRIQFLALEIARNR 184
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A0R3T973 (Polysacc_synt_4 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS3610 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.654e-44
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:   64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            +D NAENYVN++S+E+SWA+ A   AE+HY++L A+ D   +RL+  D++I+  F + FPD  VD  + DDIK+ + K  WRE+C  F+G+V DFN  +LLRLDS + Y E NT IVPRVQ+LAIEIARNR
Sbjct:    2 VDTNAENYVNEESVELSWAIAAYDHAEVHYDILSAVPDAKILRLSPFDDKIYAAFCKAFPDFDVDRFTEDDIKSDEKKVLWREFCDSFEGVVDDFNRGTLLRLDSSQEYSETNTCIVPRVQYLAIEIARNR 132
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A4S2L935 (Polysacc_synt_4 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009383 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.822e-43
Identity = 63/131 (48.09%), Postives = 98/131 (74.81%), Query Frame = 1 
Query:   64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            +D + +NYVND +IE+ WA+++ + AE H+ LL ++ D + +RLT  D++I+  F ++FPDL V ++S D +K+P++KA WR++C +F   + D+N A+L RLD+ K YDE NT +VPR+QFLA+EIARNR
Sbjct:    2 VDVDVKNYVNDPNIELQWAIRSYEHAETHFRLLCSVSDLAGLRLTRMDDQIYEEFGKVFPDLDVSILSEDQLKSPESKALWRDFCNKFSEELEDYNLATLFRLDASKAYDEHNTCVVPRIQFLALEIARNR 132
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A5K3F1P9 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.439e-42
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:   64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            MD N  +Y ND  +E SWA+ A   AE HYNLL  + D   +RL+  D +I+  F EMFP + VD I+ DDIK+   K  WR +C +F+ +  D+NFA+LLRLDS + YDE+NT +VPR+QFLAIEIARNR
Sbjct:    1 MDLNPYSYTNDAVLERSWAVAAYGHAETHYNLLCVVPDARYLRLSLIDEKIYGAFREMFPGMNVDCITEDDIKSDQQKELWRSFCTKFEKIFGDYNFATLLRLDSARGYDEDNTCVVPRIQFLAIEIARNR 131
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Match: A0A068WIE6 (Polysacc_synt_4 domain-containing protein OS=Echinococcus granulosus OX=6210 GN=EgrG_001013000 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.012e-41
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1 
Query:   82 NYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            +Y ND  +E+SWAM A   AE HYN+L A+ D   +RL+  D+ I   F+E FP L VD  + DDIK+ + K  WR +C EFDG+V D+N  +LLRLDS   YDE+NT IVPRVQFLAIEIARNR
Sbjct:    8 DYQNDTLLEMSWAMAAYDHAETHYNILCAVPDARILRLSAVDDRICKTFSETFPHLNVDCFTEDDIKSEEQKELWRSFCNEFDGVVEDYNRGTLLRLDSSGGYDEKNTCIVPRVQFLAIEIARNR 132
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Cavefish
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459])

HSP 1 Score: 126.716 bits (317), Expect = 3.944e-37
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D+ I+ +F E F DL +  +  + +K+P+AK KWR +C  F+ LV DFN+ +LLRLD  K Y EENT    R+QF A+EIARNR
Sbjct:   40 AEAYGNDAQLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKSDDMIYTKFREDFSDLDIKNLDPELLKSPEAKEKWRPFCNHFEHLVEDFNYGTLLRLDCEKDYTEENTIFATRIQFFAVEIARNR 165
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Yeast
Match: YPL225W_mRNA (Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000006146])

HSP 1 Score: 95.9005 bits (237), Expect = 2.108e-26
Identity = 52/132 (39.39%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:   73 NAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLK----VDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            NAE   N + IE  +A+ A +QAE ++ LL ++   SK+RLT  D+EI+  F E FP+ K    V   + +++K  +AK +WR++   F+  + D+NF +LLR D+   Y +  T  V R+QF A EIARN+
Sbjct:    5 NAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPG-SKLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNK 135
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Match: EDO48817 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RIJ4])

HSP 1 Score: 103.219 bits (256), Expect = 4.689e-29
Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:  103 IEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 459
            IE+ WA+KA    E H  ++ A  D + +  T+ D++I+ +++  F  LK+D+I+ DD+K+ +A+  W+ +C  F   +  +NF +LLRLD  K Y EENT  V +++F AIEIARNR 
Sbjct:    1 IELDWAVKAHHHGEAHMKIISAF-DPATLNFTSYDDDIYRQYSRCFKGLKIDIINPDDLKSDEARILWKPFCEMFRDRIPHYNFGTLLRLDCNKGYTEENTIFVTKIEFYAIEIARNRQ 118
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Match: EDO29020 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T4U3])

HSP 1 Score: 42.3578 bits (98), Expect = 6.407e-6
Identity = 18/65 (27.69%), Postives = 33/65 (50.77%), Query Frame = 1 
Query:   70 PNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVI 264
            P A     ++ IE+ WA KA    E H  ++ A  D + +  T+ D++I+ +++  F  LK   +
Sbjct:   15 PGAGGLTQEEQIELDWAAKAHHHGEAHMKIISAF-DPATLNFTSYDDDIYRQYSRCFKGLKGPTL 78
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Medaka
Match: pbdc1 (polysaccharide biosynthesis domain containing 1 [Source:NCBI gene;Acc:101172868])

HSP 1 Score: 131.339 bits (329), Expect = 4.416e-39
Identity = 62/127 (48.82%), Postives = 87/127 (68.50%), Query Frame = 1 
Query:   76 AENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNR 456
            AE Y ND  +E+ WAMKA   AE+++NL+ ++ D   ++LT  D+ I++ F E F DL V  +  +D+K+  AK +WR +C +F+GLV DFN+ +LLRLD +K Y EEN+    RVQF AIEIARNR
Sbjct:   26 AEAYGNDPRLEVMWAMKAYNHAEVYFNLISSV-DPKFLKLTKLDDRIYSSFRETFKDLDVRQLKEEDLKSDQAKERWRPFCNQFEGLVEDFNYGTLLRLDCQKGYSEENSIFSTRVQFFAIEIARNR 151
[Close]
BLAST of Polysacc_synt_4 domain-containing protein vs. Planmine SMEST
Match: SMESG000051316.1 (SMESG000051316.1)

HSP 1 Score: 273.478 bits (698), Expect = 8.761e-96
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:   64 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 459
            MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS
Sbjct:    1 MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNEIFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASLLRLDSRKPYDEENTTIVPRVQFLAIEIARNRS 132
The following BLAST results are available for this feature:
BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
PBDC12.174e-4047.24polysaccharide biosynthesis domain containing 1 [S... [more]
PBDC14.384e-1237.84polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Y54E5A.51.865e-3441.73pep chromosome:WBcel235:I:14707059:14707875:-1 gen... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG75193.255e-3041.73gene:FBgn0037087 transcript:FBtr0078353[more]
CG75194.023e-2740.94gene:FBgn0037087 transcript:FBtr0332711[more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
pbdc11.242e-4048.03polysaccharide biosynthesis domain containing 1 [S... [more]
pbdc11.612e-4048.03polysaccharide biosynthesis domain containing 1 [S... [more]
pbdc11.612e-4048.03polysaccharide biosynthesis domain containing 1 [S... [more]
pbdc11.612e-4048.03polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
pbdc18.259e-4148.82polysaccharide biosynthesis domain containing 1 [S... [more]
pbdc14.648e-3748.31polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Pbdc13.067e-4143.92polysaccharide biosynthesis domain containing 1 [S... [more]
Pbdc11.963e-3143.12polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q9D0B6|PBDC1_MOUSE2.145e-4043.92Protein PBDC1 OS=Mus musculus OX=10090 GN=Pbdc1 PE... [more]
sp|Q9BVG4|PBDC1_HUMAN1.044e-3947.24Protein PBDC1 OS=Homo sapiens OX=9606 GN=PBDC1 PE=... [more]
sp|O59727|YHX7_SCHPO6.176e-2939.86Protein PBDC1 homolog OS=Schizosaccharomyces pombe... [more]
sp|Q08971|YP225_YEAST1.464e-2439.39Protein PBDC1 homolog OS=Saccharomyces cerevisiae ... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4E0RKN51.127e-4656.49DUF757 domain-containing protein OS=Fasciola hepat... [more]
A0A0R3T9731.654e-4454.20Polysacc_synt_4 domain-containing protein OS=Roden... [more]
A0A4S2L9359.822e-4348.09Polysacc_synt_4 domain-containing protein OS=Opist... [more]
A0A5K3F1P91.439e-4252.67Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A068WIE61.012e-4156.00Polysacc_synt_4 domain-containing protein OS=Echin... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pbdc13.944e-3747.24polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
YPL225W_mRNA2.108e-2639.39Protein of unknown function; may interact with rib... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO488174.689e-2940.34Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO290206.407e-627.69Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
pbdc14.416e-3948.82polysaccharide biosynthesis domain containing 1 [S... [more]
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BLAST of Polysacc_synt_4 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000051316.18.761e-96100.00SMESG000051316.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021606 ID=SMED30021606|Name=Polysacc_synt_4 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=500bp
TGTAAAAGATATGTTTGTTTAAATATTCTTTCACTATTTCACATTAAAAA
TTAAATTTTTTCGATGGATCCAAATGCTGAAAACTACGTAAATGATCAAA
GCATTGAGATCAGTTGGGCAATGAAAGCCAGCAAACAAGCTGAAATTCAT
TACAACCTTCTGCAAGCGATTAAAGATTGTTCTAAAATGCGTTTGACTAA
CAGAGATAATGAGATTTTCAATAGATTTAATGAAATGTTTCCAGACCTTA
AAGTCGATGTGATAAGCAATGACGATATAAAAAATCCTGATGCTAAAGCT
AAATGGAGAGAATATTGCATGGAGTTTGATGGATTAGTTCATGATTTTAA
TTTTGCATCTCTACTTAGACTTGATTCCAGAAAACCTTATGATGAAGAAA
ATACAACAATTGTGCCAAGAGTTCAGTTCCTCGCGATCGAAATTGCTAGA
AACCGAAGCAACCTGAACAACAACTTATAATTAAATAAAAATTTCATGAG
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protein sequence of SMED30021606-orf-1

>SMED30021606-orf-1 ID=SMED30021606-orf-1|Name=SMED30021606-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=139bp
MDPNAENYVNDQSIEISWAMKASKQAEIHYNLLQAIKDCSKMRLTNRDNE
IFNRFNEMFPDLKVDVISNDDIKNPDAKAKWREYCMEFDGLVHDFNFASL
LRLDSRKPYDEENTTIVPRVQFLAIEIARNRSNLNNNL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0005575cellular_component
GO:0005737cytoplasm
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000028Category 2 cell
PLANA:0000240body wall musculature
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR008476PBDC1_metazoa/fungi
IPR021148Polysacc_synth_dom
IPR023139PBDC1-like_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0003674molecular_function
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021148Polysaccharide biosynthesis domainPFAMPF04669Polysacc_synt_4coord: 14..133
e-value: 5.1E-17
score: 62.0
IPR023139PBDC1-like domain superfamilyGENE3DG3DSA:1.10.3560.10coord: 10..138
e-value: 4.6E-49
score: 167.6
IPR008476Protein PBDC1, metazoa/fungiPANTHERPTHR13410FAMILY NOT NAMEDcoord: 4..137