Usp domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021549 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 12
Homology
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Match: sp|Q57951|Y531_METJA (Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0531 PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 2.141e-9 Identity = 45/163 (27.61%), Postives = 79/163 (48.47%), Query Frame = 3 Query: 93 VFVALIFQTYFTDLVLI----MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVF-IHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 VF+ L + Y + ++ + ++I+IP DGSD S++A + ++ N+ K+ D V+ I+V+D L + + Q + K +K+ EE V+ L P IV+F K D++V+G G L+R LGSV++ V+ N+ Sbjct: 4 VFILLALKYYILNSIIRNGENLYKKIVIPTDGSDVSLEAAK-HAINIAKEFDAEVYAIYVVDVSPFVGLPAEGSWELISELLKEEGQEALKKVKKMAEEWGVKIHTEML--------EGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNA 157
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Match: sp|P42297|YXIE_BACSU (Universal stress protein YxiE OS=Bacillus subtilis (strain 168) OX=224308 GN=yxiE PE=3 SV=1) HSP 1 Score: 49.2914 bits (116), Expect = 3.062e-6 Identity = 36/140 (25.71%), Postives = 68/140 (48.57%), Query Frame = 3 Query: 144 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIP---VDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYV 554 M ++L+ +DGSD S KA + + + +HV V+ + SL+ + +P +D+ ++ LK I E + + +++E ++ P I+ +K + ++V+G+RG+ LK LGSVS V Sbjct: 1 MFNKMLVAIDGSDMSAKALDAAVHLAKEQQAELSILHVGREAVVTTSSLTGIVYVPEHFIDEIRNEVKKEGLK---ILENAKEKAAEKGVQAET-IYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKV 136
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Match: sp|P72745|Y1101_SYNY3 (Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1101 PE=3 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 4.748e-6 Identity = 33/106 (31.13%), Postives = 50/106 (47.17%), Query Frame = 3 Query: 258 IDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEE---LRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 I P V N L++ V W T Q G+ EK ++ L + CQ ++ +PG+ I Q N D++V+G+RG L LGSV +YV H++ Sbjct: 4 IYPAVGNELTMEVWQQ----QWQTFEQEGLDTLEKRRQQALALDIECQAEQILG--------SPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHA 97
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183K5Q7 (Usp domain-containing protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS10332 PE=4 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.000e-36 Identity = 63/139 (45.32%), Postives = 92/139 (66.19%), Query Frame = 3 Query: 150 RRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 RRI +PVDGSD S +A EW+ + V + D V+F+H ++ P L ++SLS G+ +P+DDW A+Q I + K+N E C+ K+ +F + PG GIVQ D ++D++V+GNRGL +LKR LGSVS YV+HN+ Sbjct: 8 RRICLPVDGSDHSKRAIEWFVKEVYRPGDEVLFVHCLELPYLPTISLSSGLKVPIDDWTKALQENIAQTTKLNNEYGYICECSKIPYDFIIKNGIAPGVGIVQTVEDHHVDLIVMGNRGLSRLKRTLLGSVSSYVVHNA 146
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A267FNF3 (Usp domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig016470g1 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.157e-36 Identity = 63/140 (45.00%), Postives = 88/140 (62.86%), Query Frame = 3 Query: 147 SRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 R+ILIP+DGS + A++WY +N+ +D D++V H+++PP L S SL G N+P ++W I KA+ + E++ VR LK EF + PGE +V +MVV+G RGLG +KR FLGSVSDYVLHNS Sbjct: 3 GRKILIPLDGSQHAEAAYQWYLDNIRRDGDSLVIAHILEPPSLPSFSLKSGFNVPTEEWRNIILESGKKAKALEEDVSVRAMQTHLKMEFVAEPSKRPGEALVDIAWRTGCNMVVMGTRGLGDVKRAFLGSVSDYVLHNS 142
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A430Q6R7 (Usp domain-containing protein OS=Schistosoma bovis OX=6184 GN=DC041_0008060 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.848e-36 Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 3 Query: 147 SRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 RRI +PVDGSD S +A EW+ + V + D V+F+H ++ P L ++SL+ G+ +P+DDW A+Q I + K+N E C+ K+ +F + PG GIVQ D ++D++V+GNRGL +LKR LGSVS YV+HN+ Sbjct: 7 KRRICLPVDGSDHSKRAIEWFIKEVYRPGDEVLFVHCLELPYLPTISLTSGLKVPIDDWTKALQENIAQTTKLNNEYGYICECSKIPYDFIIKNGIAPGVGIVQTVEDHHVDLIVMGNRGLSRLKRTLLGSVSSYVVHNA 146
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A267DRP7 (Usp domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig007404g1 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.754e-35 Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 3 Query: 156 ILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 ILIP+DGS + A++WY +N+ +D D++V H+++PP L S SL G N+P ++W I KA+ + E++ VR LK EF + + PGE +V +MVV+G RGLG +KR FLGSVSDYVLHNS Sbjct: 1 ILIPLDGSQHAEAAYQWYLDNIRRDGDSLVIAHILEPPSLPSFSLKSGFNVPTEEWRNIILESGKKAKALEEDVSVRAMQTHLKMEFIAETSKRPGETLVDIAWRTGCNMVVMGTRGLGDVKRAFLGSVSDYVLHNS 137
BLAST of Usp domain-containing protein vs. TrEMBL
Match: A0A183MF88 (Usp domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS14713 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 6.628e-35 Identity = 61/139 (43.88%), Postives = 91/139 (65.47%), Query Frame = 3 Query: 150 RRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 R I +PVDGSD S +A EW+ + V + D V+F+H ++ P L ++SL+ G+ +P+DDW A+Q I + K+N E C+ K+ +F + PG GIVQ + ++D++V+GNRGL KLKR LGSVS YV+HN+ Sbjct: 8 RIICLPVDGSDHSKRAIEWFIKEVYRPGDEVLFVHCLELPYLPTISLTSGLKVPIDDWTKALQENIAQTTKLNNEYGYMCECSKIPYDFVIKNGIAPGVGIVQTVEEHHVDLIVMGNRGLSKLKRTLLGSVSSYVVHNA 146
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO44746 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUS8]) HSP 1 Score: 108.227 bits (269), Expect = 2.107e-29 Identity = 53/139 (38.13%), Postives = 79/139 (56.83%), Query Frame = 3 Query: 150 RRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 RR++IPVDGS S +AF WY ++V + D V+ IH + P + S + G + D+W A+ I+ A+K+ EE +C+ + S PGE I Q D + VV+G+RG G ++R LGSVSDY +H+S Sbjct: 7 RRVVIPVDGSQHSERAFNWYRQHVHEPGDEVLIIHTQEQPTIPSSPYAYGGTVLPDEWNKAVDECIVNAKKLIEEYNKKCKEQGMTCRLFKGS-GQPGETICQLAKDLSAKHVVMGSRGCGTIRRTLLGSVSDYCVHHS 144
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO42428 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S1B4]) HSP 1 Score: 105.145 bits (261), Expect = 2.528e-28 Identity = 51/143 (35.66%), Postives = 81/143 (56.64%), Query Frame = 3 Query: 144 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSI--SHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 MSR++L+ VDGS+ S A +WY + +D+D + V P L + S G+ +P ++W ++ +A K E + K+K EF + N PGE I + +K +D++++G RGL L+R LGSVSDYVLH++ Sbjct: 1 MSRKVLVAVDGSEHSHAALDWYLKKCKRDDDMLYGCIVKQQPSLPTFSFKAGITVPHEEWEEILKKTNERANKEEEYFEMTVVPTKMKHEFEPLLDPDNKPGERICEHARNKKVDLIIMGTRGLNTLRRTLLGSVSDYVLHHA 143
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO45800 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRQ2]) HSP 1 Score: 103.605 bits (257), Expect = 1.084e-27 Identity = 50/140 (35.71%), Postives = 86/140 (61.43%), Query Frame = 3 Query: 150 RRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDD-WATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 RRIL+P+D S S AFEWY N+ + D ++ +HV+D + + S G+ VDD + + G+ + + + E+ + + + LK++ + PGE I Q + D++ D++++G+RGLG ++R LGSVSDYVLH++ Sbjct: 10 RRILLPIDSSKHSEDAFEWYVNNMHHEEDELILVHVLDSAAIQTRVSSHGL---VDDEFKNEMNKGLKEVKALEEKYKTKAETASLKAKI-EVRGGKPGETICQCSKDEHCDLILMGSRGLGSIRRTILGSVSDYVLHHA 145
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO38238 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SDJ5]) HSP 1 Score: 96.6709 bits (239), Expect = 4.705e-25 Identity = 50/141 (35.46%), Postives = 82/141 (58.16%), Query Frame = 3 Query: 147 SRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSI-SHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 + IL PVDGSD S +AF++Y + V + +D V+ H+++P + + +L+ G+ +W T ++ A +I + C+ + F SI N GEGI + ++ D ++IGNRGLG +KR LGSV+DYV+ +S Sbjct: 4 TESILFPVDGSDHSSRAFDYYLDKVKRADDQVLLAHIVEPTGIPTPTLAHGVTRSRAEWDTIMRRMEETAREITADYEKICEAENIP--FQSIWGAGNAGEGICELAKNEGADFILIGNRGLGSIKRTLLGSVTDYVVQHS 142
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Match: EDO44805 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUT2]) HSP 1 Score: 96.2857 bits (238), Expect = 8.276e-25 Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 147 SRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 R+I+IPVDGS S +AF+WY + + ND V +H DP G P +DW ++ + A+ + E +C+ K+K + +PGE I + DKN D +++G+RGLG ++R +GSVS++ LH++ Sbjct: 9 GRKIVIPVDGSKHSERAFDWYKGALHRGNDEVFVVHAFDPYAAPPTPYPYGFAFP-EDWEQHMKKTVDDAKSVMEYYEKKCKDSKMKCTMLTKP-GDPGETICEIAKDKNADQIIMGSRGLGTVRRTIVGSVSEFCLHHT 146
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000079952.1 (SMESG000079952.1) HSP 1 Score: 292.352 bits (747), Expect = 1.622e-101 Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 3 Query: 144 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNSC 569 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRC LGSVSDYVLHNSC Sbjct: 1 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCLLGSVSDYVLHNSC 142
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000051705.1 (SMESG000051705.1) HSP 1 Score: 155.606 bits (392), Expect = 1.246e-47 Identity = 70/143 (48.95%), Postives = 101/143 (70.63%), Query Frame = 3 Query: 138 LIMSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 + +RIL+P+DGS +S KAF W +N+ K +D ++F+HV++PPVL S +L G+NIPVD+ + IQ I K+EK++ C K E+++I+H +PGEGI Q ++D N D++VIGNRGLGK KR LGSVSDYV++ S Sbjct: 1 MTRPKRILLPIDGSYYSQKAFHWAVKNLYKPDDVLIFVHVVNPPVLKSFTLKSGINIPVDELSKKIQKRIEKSEKLHSSYSNECLNYNAKHEYYTITHKSPGEGICQSSVDNNADIIVIGNRGLGKFKRTLLGSVSDYVINRS 143
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000016283.1 (SMESG000016283.1) HSP 1 Score: 101.679 bits (252), Expect = 1.132e-26 Identity = 52/146 (35.62%), Postives = 87/146 (59.59%), Query Frame = 3 Query: 141 IMSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNIP----VDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 + R I+IP+D S+ S +AF WY +N+ + ND V+FIHV++P + +VGM P +DD + ++ I + +K+ +E + L+ + PG +V+ D D+++IGNRG+G L+R FLGSVSD++LH++ Sbjct: 1 MAKRSIMIPIDSSEHSKRAFRWYIKNMKQPNDLVLFIHVVEP---VYATPAVGMMEPPPIVLDDMSRMMEDAINEGKKLGQEFMHEAKDTGLEPKAFIHVDTKPGAALVKSAKDHQADVIIIGNRGVGTLRRTFLGSVSDHILHHA 143
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020952.1 (SMESG000020952.1) HSP 1 Score: 100.138 bits (248), Expect = 5.957e-26 Identity = 50/144 (34.72%), Postives = 89/144 (61.81%), Query Frame = 3 Query: 144 MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMNI---PVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 + R IL+PVD S+ + +A +WY EN+MK ND V IH+++P + S ++ +GM + PV+D + I+ + K + + ++ Q +++ + I + GE I++ +D++++ NRG G ++R FLGSVSDYVLH++ Sbjct: 9 VERVILMPVDRSEHTERAIDWYVENLMKPNDLVQMIHIVEP-MYTSTAVGIGMEVAFLPVEDLESKIKKQLDKGKSLVKKFTHELQEKGGRAKGYVIVDSKVGEAIIKVCHTHKVDLIIVANRGEGLIRRTFLGSVSDYVLHHA 151
BLAST of Usp domain-containing protein vs. Planmine SMEST
Match: SMESG000020882.1 (SMESG000020882.1) HSP 1 Score: 92.8189 bits (229), Expect = 4.407e-23 Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 147 SRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSVGMN---IPVDDWATAIQAGILKAEKINEELRVRCQLMKLKSEFHSISHNNPGEGIVQFTLDKNIDMVVIGNRGLGKLKRCFLGSVSDYVLHNS 566 R I+IP+D S+ S +A +WYS N+MK+ND V IH+++ P+ N++++ +GM +P+++ IQ I K + + E K + + GE I+ D D++++ NRG G L+R FLGSVSDYVLH++ Sbjct: 18 ERIIIIPIDKSEVSRRALDWYSNNMMKENDVVHLIHIVE-PIYNTIAVGIGMEAAWLPMEELDAKIQKQIDKGKALVREYISNLTDKGGKCKGFIRVDSRVGECIISVCHDHLADVILMANRGEGLLRRTFLGSVSDYVLHHA 159 The following BLAST results are available for this feature:
BLAST of Usp domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of Usp domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Usp domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of Usp domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Usp domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021549 ID=SMED30021549|Name=Usp domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=778bpback to top protein sequence of SMED30021549-orf-1 >SMED30021549-orf-1 ID=SMED30021549-orf-1|Name=SMED30021549-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=154bp MSRRILIPVDGSDFSIKAFEWYSENVMKDNDTVVFIHVIDPPVLNSLSLSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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