Splicing factor 3A subunit 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30021536 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Human
Match: SF3A1 (splicing factor 3a subunit 1 [Source:HGNC Symbol;Acc:HGNC:10765]) HSP 1 Score: 330.102 bits (845), Expect = 8.229e-101 Identity = 170/281 (60.50%), Postives = 210/281 (74.73%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMK---------LAQDT-PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ L Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP + KL KE+++P + YRV W ++Q R+RKKE E ++KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 38 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSA--AIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 316 HSP 2 Score: 107.457 bits (267), Expect = 2.646e-23 Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR+ + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 388 IVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 508
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Celegans
Match: prp-21 (Pre-RNA processing 21; Yeast PRP (Splicing factor) related [Source:UniProtKB/TrEMBL;Acc:G5ECL3]) HSP 1 Score: 254.988 bits (650), Expect = 1.203e-74 Identity = 125/268 (46.64%), Postives = 175/268 (65.30%), Query Frame = 2 Query: 80 FGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGE 883 G+I PPPD+R IVD+TA F A+NG DFE +++ EA N KFNFL+ DPY+ YY + V EG VE+ +V +K A+ F P P +EF DP +IN+ +LD++RL A FVARNGRQFLTQLM RE RNY FDFL+P H F+YFTKLV+Q+ K+L+P +++ +L ++ + + +++ YRV+W+++Q + +E +KER AY IDWHDFVVV+ VD+QP + PP P++VGAR + E R E Sbjct: 25 IGLIYPPPDIRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLSITDPYHAYYKKMVYDFSEGRVEAPKVPQAVKEHVKKAE---------FVPSAPPPAYEFSADPSTINAYDLDLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKPAHCNFTYFTKLVDQYQKVLVPSTNVVAQLQDDATNKKRLIEDINYRVSWEKHQKGLKDREEAEAEKERQAYASIDWHDFVVVQTVDFQPGDTSQLPPLCTPKDVGARILLEARNE 283 HSP 2 Score: 80.1073 bits (196), Expect = 2.953e-15 Identity = 47/130 (36.15%), Postives = 81/130 (62.31%), Query Frame = 2 Query: 1139 KPEEVLIKTYDPK--AKSKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEED-AKKGE-KYIWDGHAATQE 1510 K ++V+++ YDPK K + E ++ISPL ++I + + +H+ ++ ++E RDR+ + E+ G ++ NL AERRTDIFG+ E+T+IG+K+GEED +++G+ K IWDG T++ Sbjct: 323 KQKDVIVRDYDPKRNVTQKPKAVENWIISPL-TGERIPSDKLAEHVRYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKKLGEEDNSQQGQNKLIWDGTEETRD 451
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Fly
Match: Sf3a1 (gene:FBgn0266917 transcript:FBtr0083374) HSP 1 Score: 397.897 bits (1021), Expect = 4.950e-127 Identity = 228/494 (46.15%), Postives = 315/494 (63.77%), Query Frame = 2 Query: 104 DVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISA-----KVSVPTAMKLAQD--TPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKES----KSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAE-----ERGEQVVNRWIED-NKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKP--EEVLIKTYDPKAKSKRQ----TDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 +VRNIVD+TA FVARNGP+FEAR++ NE N KFNFLN DPY+ YY +V + EG I+A +++V +A + Q + +++ F PKE P EFEFI DPPSI++L+LDIV+LTAQFVARNGRQFLT LM+REQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP D++ KL ES S ++ KYR W R+Q QR++E E ++ERVAY QIDWHDFVVVE VDYQP E GNFPPPT P+EVGAR + E E G+ + +D +Q + + E + G+ + +N + + TT QP + ++ P ++V++K YDPKA +Q TDE +LISP+ +KI S+ ++H+ +GLL+P W E RD++T K+ +D F +G ++ +LK +AERRTDIFG+ EETVIG+K+GEE+ KK ++ WDGH ++ E Sbjct: 34 EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALASMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGI--QMKNVSSYGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQP----SVAPMLPPTHDKVVVKKYDPKATQPKQAPMPTDE-YLISPI-TGEKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVE 519
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Fly
Match: scaf6 (gene:FBgn0261872 transcript:FBtr0301554) HSP 1 Score: 53.9138 bits (128), Expect = 6.378e-8 Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 89 IIPPPD--VRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV 256 + PP D +RNI+D+ AEFVARNGP+FEA K + NN KF FL + N YY RV Sbjct: 3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGEFAN-YYQFRV 59
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Fly
Match: scaf6 (gene:FBgn0261872 transcript:FBtr0345067) HSP 1 Score: 54.299 bits (129), Expect = 1.164e-7 Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 89 IIPPPD--VRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV 256 + PP D +RNI+D+ AEFVARNGP+FEA K + NN KF FL + N YY RV Sbjct: 3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGEFAN-YYQFRV 59
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Fly
Match: scaf6 (gene:FBgn0261872 transcript:FBtr0091474) HSP 1 Score: 52.7582 bits (125), Expect = 1.112e-6 Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 2 Query: 89 IIPPPD--VRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV 256 + PP D +RNI+D+ AEFVARNGP+FEA K + NN KF FL + N YY RV Sbjct: 3 VQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGEFAN-YYQFRV 59
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Match: sf3a1 (splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]) HSP 1 Score: 327.791 bits (839), Expect = 2.724e-100 Identity = 169/276 (61.23%), Postives = 211/276 (76.45%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQ-----EVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ Q P+ +Q E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP ++ KL KE+++P + +YRV W ++Q R+RKKE E +KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 29 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSA--AVPKVMQHPQQLPQKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWAKFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 302 HSP 2 Score: 108.227 bits (269), Expect = 9.445e-24 Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 2 Query: 1151 VLIKTYDPKAK---SKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + T + +LISP+ +KI S+ +H+ +GLL+P W E RDR+ + + E+ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 375 IIRKDYDPKASKPLAPVATPDEYLISPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 495
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Match: sf3a1 (splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]) HSP 1 Score: 327.791 bits (839), Expect = 2.724e-100 Identity = 169/276 (61.23%), Postives = 211/276 (76.45%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQ-----EVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ Q P+ +Q E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP ++ KL KE+++P + +YRV W ++Q R+RKKE E +KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 29 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSA--AVPKVMQHPQQLPQKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWAKFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 302 HSP 2 Score: 108.227 bits (269), Expect = 9.445e-24 Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 2 Query: 1151 VLIKTYDPKAK---SKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + T + +LISP+ +KI S+ +H+ +GLL+P W E RDR+ + + E+ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 375 IIRKDYDPKASKPLAPVATPDEYLISPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 495
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Match: sf3a1 (splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]) HSP 1 Score: 327.791 bits (839), Expect = 2.724e-100 Identity = 169/276 (61.23%), Postives = 211/276 (76.45%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQ-----EVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ Q P+ +Q E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP ++ KL KE+++P + +YRV W ++Q R+RKKE E +KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 29 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSA--AVPKVMQHPQQLPQKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLLKLKKEAENPREVLDQVRYRVEWAKFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 302 HSP 2 Score: 108.227 bits (269), Expect = 9.445e-24 Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 2 Query: 1151 VLIKTYDPKAK---SKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + T + +LISP+ +KI S+ +H+ +GLL+P W E RDR+ + + E+ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 375 IIRKDYDPKASKPLAPVATPDEYLISPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 495
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Match: sf3a1 (splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]) HSP 1 Score: 171.014 bits (432), Expect = 6.378e-49 Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQ-----EVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQL 493 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ Q P+ +Q E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQL Sbjct: 29 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKAQEPSA--AVPKVMQHPQQLPQKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQL 171
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Match: sfswap (splicing factor SWAP [Source:ZFIN;Acc:ZDB-GENE-040426-931]) HSP 1 Score: 50.8322 bits (120), Expect = 3.385e-6 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 2 Query: 68 VAPKFGVIIPP-------PDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEG 274 VAP G++IPP I++RTA FV + G FE +K +A NS+F+FL NPYY ++ EG Sbjct: 177 VAPP-GLLIPPDVELPATTKTHAIIERTANFVCKQGAQFEIVLKAKQAGNSQFDFLRFDHYLNPYYKHILRAMKEG 251
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Xenopus
Match: gpx7 (glutathione peroxidase 7 [Source:Xenbase;Acc:XB-GENE-940915]) HSP 1 Score: 328.561 bits (841), Expect = 2.603e-101 Identity = 164/279 (58.78%), Postives = 211/279 (75.63%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT--------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + +QE PKE P EFE++ DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP ++ KL KE+++P + +YRV W ++Q R++KKE E +++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 33 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSA--AIPKVMQQQQSVQQLPQKVQAQVVQETIVPKEPPPEFEYVADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLVKLKKEAENPTEVLDQVRYRVEWAKFQEREKKKEEEEKERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 309 HSP 2 Score: 105.916 bits (263), Expect = 5.504e-23 Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 382 IVRKDYDPKASKPLPPAPAPDEYLVSPIT-GEKIPASKMQEHMRIGLLDPRWLEQRDRAIREKQGDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 502
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Xenopus
Match: gpx7 (glutathione peroxidase 7 [Source:Xenbase;Acc:XB-GENE-940915]) HSP 1 Score: 329.331 bits (843), Expect = 8.529e-101 Identity = 164/279 (58.78%), Postives = 211/279 (75.63%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT--------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + +QE PKE P EFE++ DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP ++ KL KE+++P + +YRV W ++Q R++KKE E +++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 33 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSA--AIPKVMQQQQSVQQLPQKVQAQVVQETIVPKEPPPEFEYVADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLVKLKKEAENPTEVLDQVRYRVEWAKFQEREKKKEEEEKERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 309 HSP 2 Score: 105.531 bits (262), Expect = 8.414e-23 Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 382 IVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRAIREKQGDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 502
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Xenopus
Match: gpx7 (glutathione peroxidase 7 [Source:Xenbase;Acc:XB-GENE-940915]) HSP 1 Score: 329.331 bits (843), Expect = 1.392e-100 Identity = 164/279 (58.78%), Postives = 211/279 (75.63%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT--------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + +QE PKE P EFE++ DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP ++ KL KE+++P + +YRV W ++Q R++KKE E +++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 33 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSA--AIPKVMQQQQSVQQLPQKVQAQVVQETIVPKEPPPEFEYVADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLVKLKKEAENPTEVLDQVRYRVEWAKFQEREKKKEEEEKERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 309 HSP 2 Score: 105.916 bits (263), Expect = 7.424e-23 Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 382 IVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRAIREKQGDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 502
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Xenopus
Match: gpx7 (glutathione peroxidase 7 [Source:Xenbase;Acc:XB-GENE-940915]) HSP 1 Score: 328.946 bits (842), Expect = 1.403e-100 Identity = 164/279 (58.78%), Postives = 211/279 (75.63%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT--------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + +QE PKE P EFE++ DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP ++ KL KE+++P + +YRV W ++Q R++KKE E +++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 32 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSA--AIPKVMQQQQSVQQLPQKVQAQVVQETIVPKEPPPEFEYVADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLVKLKKEAENPTEVLDQVRYRVEWAKFQEREKKKEEEEKERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 308 HSP 2 Score: 105.916 bits (263), Expect = 7.969e-23 Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 381 IVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRAIREKQGDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 501
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Mouse
Match: Sf3a1 (splicing factor 3a, subunit 1 [Source:MGI Symbol;Acc:MGI:1914715]) HSP 1 Score: 329.717 bits (844), Expect = 6.868e-101 Identity = 170/287 (59.23%), Postives = 211/287 (73.52%), Query Frame = 2 Query: 56 EPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT----------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 +P P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP + KL KE+++P + YRV W ++Q R+RKKE E ++KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 32 DPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSA--AIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 316 HSP 2 Score: 107.071 bits (266), Expect = 2.476e-23 Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKR----QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA DE +L+SP+ +KI S+ +H+ +GLL+P W E RDR+ + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 386 IVRKDYDPKASKPLPPAPAPDE-YLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 506
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Match: sp|Q15459|SF3A1_HUMAN (Splicing factor 3A subunit 1 OS=Homo sapiens OX=9606 GN=SF3A1 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 3.952e-100 Identity = 170/281 (60.50%), Postives = 210/281 (74.73%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMK---------LAQDT-PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ L Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP + KL KE+++P + YRV W ++Q R+RKKE E ++KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 38 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSA--AIPKVMQQQQQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 316 HSP 2 Score: 107.457 bits (267), Expect = 1.271e-22 Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + +L+SP+ +KI S+ +H+ +GLL+P W E RDR+ + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 388 IVRKDYDPKASKPLPPAPAPDEYLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 508
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Match: sp|Q8K4Z5|SF3A1_MOUSE (Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3a1 PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 4.804e-100 Identity = 170/287 (59.23%), Postives = 211/287 (73.52%), Query Frame = 2 Query: 56 EPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT----------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 +P P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP + KL KE+++P + YRV W ++Q R+RKKE E ++KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 32 DPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSA--AIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 316 HSP 2 Score: 107.071 bits (266), Expect = 1.732e-22 Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKR----QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA DE +L+SP+ +KI S+ +H+ +GLL+P W E RDR+ + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 386 IVRKDYDPKASKPLPPAPAPDE-YLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 506
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Match: sp|A2VDN6|SF3A1_BOVIN (Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 PE=2 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 8.462e-100 Identity = 169/281 (60.14%), Postives = 209/281 (74.38%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT----------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA ++P M+ Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP + KL KE+++P + YRV W ++Q R+RKKE E ++KERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 38 PVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSA--AIPKVMQQQQQASQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFTKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 316 HSP 2 Score: 107.071 bits (266), Expect = 1.435e-22 Identity = 54/123 (43.90%), Postives = 81/123 (65.85%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKR----QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA DE +L+SP+ +KI S+ +H+ +GLL+P W E RDR+ + K +D + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 388 IVRKDYDPKASKPLPPAPAPDE-YLVSPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 508
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Match: sp|Q8RXF1|SF3A1_ARATH (Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At1g14650 PE=1 SV=2) HSP 1 Score: 204.142 bits (518), Expect = 2.496e-54 Identity = 117/279 (41.94%), Postives = 171/279 (61.29%), Query Frame = 2 Query: 80 FGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV-------KQCIEGTVES---ISAKVSVPTAMKL-AQDTPKAIQEVF----EPKETPAEFEFIVD-PPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIA 868 G+I PPPD+R IV++TA+FV++NG +FE R+ ++ N+KFNFL S DPY+ +Y ++ K +GT +S ++ A + A DT +Q F +P E P ++ V P I ELDI++LTAQFVARNG+ FLT L NRE N F F++P H+MF++FT LV+ ++++L+PP D+ EKL K + ++ C +R+ WDR Q +Q+KKE + ++ ERV IDWHDFVVVE +D+ E PPP +EV R+ A Sbjct: 59 IGIIHPPPDIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADESEAGDTQPDLQAQFRIPSKPLEAPEPEKYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLSNRENNNPQFHFMKPTHSMFTFFTSLVDAYSEVLMPPKDLKEKLRKSAADLTTVLERCLHRLEWDRSQEQQKKKEEDEKELERVQMAMIDWHDFVVVESIDFADEEDEELPPPMTLDEVIRRSKA 337
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Match: sp|O13900|SA114_SCHPO (Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap114 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.224e-47 Identity = 93/240 (38.75%), Postives = 149/240 (62.08%), Query Frame = 2 Query: 83 GVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEK-LNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDY 799 GVI+PPP +R I+D++A +VARNGP FE +++ NE N+KF FL++ DPY+PYY ++ + EG ++S + +S LA+ K I+ P+ + F PSI+SL+LD++RLTA++ A G FL L +E N FDFL+P + ++ YF ++V+Q+T ++ P E+ L + + P + + RV W + Q+KK+ E +KE++ Y QIDW+DFVVVE++ + Sbjct: 33 GVILPPPAIREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKSHATGLSTQKTSTLARPIQKPIEATI---PAPSPYLFSEPLPSISSLDLDVLRLTARYAAVRGSSFLVSLSQKEWNNTQFDFLKPNNALYPYFMRIVQQYTSLIREPISSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEKLEYAQIDWNDFVVVEVIQF 269
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Match: A0A1Y1NJN2 (Uncharacterized protein OS=Photinus pyralis OX=7054 GN=PPYR_04528 PE=4 SV=1) HSP 1 Score: 416.387 bits (1069), Expect = 5.917e-131 Identity = 231/494 (46.76%), Postives = 321/494 (64.98%), Query Frame = 2 Query: 68 VAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISA-------KVSV-PTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQVVNRWIEDNKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKPEEVLIKTYDPKAKSK---RQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 + P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE N KFNFLN+ DPY+ YY +V EG + A K++V +A + Q+ K++++ F PKE P +FEFI DPPSI++L+LDIV+LTAQFVARNGRQFLTQLMNREQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP + ++L + KS + M+N KYR W +YQ QR +E E ++ERVAY QIDWHDFVVVE VDYQ E+GNFPPPT PEEVGAR + +ER E+ + ++ +E+ +E ++TG H + +N ++E+ + P T+ + P+ ++K YDPK K + +LISP+ +KI S+ +H+ +GLL+P W E RD++ +K+ +DT + +G +D +LK +AERRTDIFG+ EET IG+K+GEED +K EK WDGH ++ E Sbjct: 32 INPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNTGDPYHAYYQHKVNDFREGKTQDTPAALPGAIAKLTVSASAQQKQQEILKSVEQPFIPKEPPTDFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTQLMNREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKGMQQRLRDDCKSAQGVMENSKYRAEWHKYQEAQRAREEEILERERVAYAQIDWHDFVVVETVDYQQFEIGNFPPPTTPEEVGARLLIQERIEEGEDIEMQLESDEEDATTRNDEGLSHMVDRTG-HRKDDNRVQDMEE-----------ESSDEDGEPRHGTSMQPPLPPIPDKVIVK-------KYDPKQAHKPVRPVGGDDYLISPI-TGEKIPASKVQEHMRIGLLDPRWVEQRDKHVTDKMSQDTVYAAGSAIDASLKQLAERRTDIFGVGDEETAIGKKIGEEDVRKDEKVTWDGHTSSVE 505
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Match: A0A1W4VUG4 (splicing factor 3A subunit 1 OS=Drosophila ficusphila OX=30025 GN=LOC108097611 PE=4 SV=1) HSP 1 Score: 413.305 bits (1061), Expect = 1.944e-129 Identity = 236/505 (46.73%), Postives = 322/505 (63.76%), Query Frame = 2 Query: 71 APKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISA-----KVSVPTAMKLAQD--TPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKES----KSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEER---GEQVVNRWIE---DNKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKP--EEVLIKTYDPKAKSKR----QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE N KFNFLN DPY+ YY +V + EG I+A +++V +A + Q + +++ F PKE P EFEFI DPPSI++L+LDIV+LTAQFVARNGRQFLT LM+REQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP D++ KL ES S + + KYR W R+Q QR++E E ++ERVAY QIDWHDFVVVE VDYQP E GNFPPPT P+EVGAR + EER E IE + +Q ++ + E + G+ + +N + + TT QP A ++ P ++V++K YDPKA + TDE +LISP+ +KI S+ ++H+ +GLL+P W E RD++T K+ +D F +G ++ +LK +AERRTDIFG+ EETVIG+K+GEE+ KK ++ WDGH ++ E Sbjct: 23 GPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALTGMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLRAESAPGRSSMNQVLDHVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDDEGDSQVTSHHDSGLKLSQMENRVGI--QMKNVSSYGQPTGAKRDNTQVQDMDEASSDEDTPTTKLQP----AVAPMLPPTHDKVVVKKYDPKATQPKPAPMPTDE-YLISPI-TGEKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVE 519
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Match: B4PM97 (Uncharacterized protein OS=Drosophila yakuba OX=7245 GN=Dyak\GE26116 PE=4 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 3.255e-125 Identity = 232/494 (46.96%), Postives = 317/494 (64.17%), Query Frame = 2 Query: 104 DVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISA-----KVSVPTAMKLAQD--TPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESK----SPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEER---GEQVVNRWIEDNK---TQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKP--EEVLIKTYDPKAKSKRQ----TDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 +VRNIVD+TA FVARNGP+FEAR++ NE N KFNFLN DPY+ YY +V + EG I+A +++V +A + Q + +++ F PKE P EFEFI DPPSI++L+LDIV+LTAQFVARNGRQFLT LM+REQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP D++ KL ES S +++ KYR W R+Q QR++E E ++ERVAY QIDWHDFVVVE VDYQP E GNFPPPT P+EVGAR + EER E IE ++ +Q E + E + G+ + +N + + TT QP A ++ P ++V++K YDPKA +Q TDE +LISP+ +KI S+ ++H+ +GLL+P W E RD++T K+ +D F +G ++ +LK +AERRTDIFG+ EETVIG+K+GEE+ KK ++ WDGH ++ E Sbjct: 34 EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITAIANMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLRTESAPGRGSMNQVLEHVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDEEGDTEMQIESDEEGDSQVNSLLESGLKLSQMENRVGI--QMKNVSSYGQPTGAKRDNTQVQDMDEASSDEDTPTTKLQP----AVAPMLPPTHDKVVVKKYDPKATQPKQAPMPTDE-YLISPI-TGEKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETKKDDRVTWDGHTSSVE 519
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Match: E9IJM9 (Uncharacterized protein (Fragment) OS=Solenopsis invicta OX=13686 GN=SINV_06548 PE=4 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 6.268e-125 Identity = 233/491 (47.45%), Postives = 317/491 (64.56%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEG-----TVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQVVNRWIEDNKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKPEEVLIKTYDPKAKSKRQT-----DEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 P G+I PPP+VRNIVD+TA FVARNGP+FE+R++ NE N KFNFLN DPY+ YY +VK+ EG TV S K TA + Q+ K +++ F PK+ P EFEFI DPPSI++L+LDIV+LTAQFVARNGRQFLT LMNREQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP D++ +L E+ + + ++ KYR + +YQ QR+KE E ++ERVAY QIDWHDFVVVE VDYQ EVGNFP PT P+EVGAR + +ER E ED + Q + + ++E + + EKT + ED D+ P T+ + P N++ + K YDPK + + + DE +LISP+ ++I S+ +H+ +GLL+P W E RD++ +KL ++T F G ++ +LK +AERRTDIFG+ EET IG+K+GEED KK +K WDGH ++ E Sbjct: 26 PIVGIIYPPPEVRNIVDKTASFVARNGPEFESRIRQNELGNPKFNFLNFGDPYHAYYQHKVKEFKEGKGQEPTVGSAPGKTVNLTAHQKQQEILKQVEQPFVPKDPPTEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMNREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLPRLKDEALNMDKILEQVKYRAEYLKYQEAQRRKEEEELERERVAYAQIDWHDFVVVETVDYQQFEVGNFPAPTTPDEVGARVLMQERIEDG-----EDVEMQIDSDADDETQTRTDGEKTDRAKDNNQVQDMEEDSSDEDDVSPPGDTHKSKEPKPRETSMQPPPLPPTPGNVV-----VKKGYDPKQHAPKTSRPAAPDE-YLISPI-TGERIPASKVQEHMRIGLLDPRWVEQRDKHL-DKLAQETVFAPGTAIEASLKQLAERRTDIFGVGDEETAIGKKIGEEDKKKDDKVTWDGHTSSVE 503
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Match: B3NZA3 (GG16800 OS=Drosophila erecta OX=7220 GN=Dere\GG16800 PE=4 SV=1) HSP 1 Score: 400.593 bits (1028), Expect = 1.419e-124 Identity = 227/492 (46.14%), Postives = 319/492 (64.84%), Query Frame = 2 Query: 104 DVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISA-----KVSVPTAMKLAQD--TPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKES----KSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEER-GEQVVNRWIE---DNKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKP--EEVLIKTYDPKAKSKRQ----TDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQE 1510 +VRNIVD+TA FVARNGP+FEAR++ NE N KFNFLN DPY+ YY +V + EG I+A +++V +A + Q + +++ F PKE P EFEFI DPPSI++L+LDIV+LTAQFVARNGRQFLT LM+REQRN+ FDFLRPQH++F YFTKL+EQ+TK+L+PP D++ KL ES S + + KYR W R+Q QR++E E ++ERVAY QIDWHDFVVVE VDYQP E GNFPPPT P+EVGAR + EER ++V + ++ D++ + + ++ + + V + +N + + TT QP A ++ P ++V++K YDPKA +Q TDE +LISP+ +KI S+ ++H+ +GLL+P W E RD++T K+ +D F +G ++ +LK +AERRTDIFG+ EETVIG+K+GEE+ +K ++ WDGH ++ E Sbjct: 34 EVRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITAIANMKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQYTKVLIPPKDLLGKLRTESAPGRSSMNQVLDHVKYRANWQRHQEAQRRREEEKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLMEERLMDEVADTEMQIESDDEGDSHVNSLLDSGLKLSQMENRVGIQMKNVSSYGQPAGAKRDNNQVQDMDEASSDEDTPTTKLQP----AVAPMLPPTHDKVVVKKYDPKASQPKQAPMPTDE-YLISPI-TGEKIPASKVSEHMRIGLLDPRWVEQRDKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGEEETRKDDRVTWDGHTSSVE 519
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Cavefish
Match: sf3a1 (splicing factor 3a subunit 1 [Source:NCBI gene;Acc:103044926]) HSP 1 Score: 328.176 bits (840), Expect = 1.990e-100 Identity = 168/296 (56.76%), Postives = 212/296 (71.62%), Query Frame = 2 Query: 32 HILKMTITEPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT-----------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 H L E P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ + I E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP +++KL +E+++P + +YRV W ++Q R+RKKE E ++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 17 HTLHKEKDETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSA--AVPKVMQQQSLQQSQQQLPQKVQAQVIHETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLQKLKREAENPREVLDQVRYRVEWAKFQERERKKEEEERERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 310 HSP 2 Score: 110.923 bits (276), Expect = 1.149e-24 Identity = 54/122 (44.26%), Postives = 83/122 (68.03%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKR---QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + QT + +LISP+ +KI S+ +H+ +GLL+P W E RDR+ + + E+ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 383 IIRKDYDPKASKPQAPVQTTDEYLISPI-TGEKILASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 503
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Cavefish
Match: sf3a1 (splicing factor 3a subunit 1 [Source:NCBI gene;Acc:103044926]) HSP 1 Score: 326.635 bits (836), Expect = 6.821e-100 Identity = 165/282 (58.51%), Postives = 209/282 (74.11%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDT-----------PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA +VP M+ + I E PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP +++KL +E+++P + +YRV W ++Q R+RKKE E ++ERVAY QIDWHDFVVVE VD+QPNE GNFPPPT PEE+GAR + +ER E+ Sbjct: 27 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSA--AVPKVMQQQSLQQSQQQLPQKVQAQVIHETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLQKLKREAENPREVLDQVRYRVEWAKFQERERKKEEEERERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEK 306 HSP 2 Score: 110.923 bits (276), Expect = 1.074e-24 Identity = 54/122 (44.26%), Postives = 83/122 (68.03%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKR---QTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA + QT + +LISP+ +KI S+ +H+ +GLL+P W E RDR+ + + E+ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 379 IIRKDYDPKASKPQAPVQTTDEYLISPI-TGEKILASKMQEHMRIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 499
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.1434 bits (126), Expect = 8.631e-7 Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = -2 Query: 2107 DEVVKIIFNKPPLNVFSIGIKEEYPKISDKVITFLLPFSTTHLCELSF*TLV 2262 D +K+IF++ L F + + EYP +SDK + FL+PF TT+LCE F LV Sbjct: 580 DSALKLIFSQKSLVNFWLHARSEYPDLSDKAVRFLMPFPTTYLCETGFSMLV 631
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 52.373 bits (124), Expect = 1.514e-6 Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = -2 Query: 2107 DEVVKIIFNKPPLNVFSIGIKEEYPKISDKVITFLLPFSTTHLCELSF*TLV 2262 D +K IF++ L F + + EYP +SDK + FL+PF TT+LCE F LV Sbjct: 537 DSALKFIFSQKSLVNFWLHARSEYPDLSDKAVRFLMPFPTTYLCETGFSMLV 588
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Sea Lamprey
Match: sf3a1 (splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]) HSP 1 Score: 326.25 bits (835), Expect = 1.165e-102 Identity = 162/276 (58.70%), Postives = 210/276 (76.09%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMK----LAQDT-PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFL + DPY+ YY +V + EG + SA +VP M+ ++Q + +QE PKE P +FEF+ D PSI+ +LD+V+LTAQFVARNGR FLTQLM +EQRNY FDFLRPQH++F YFTKLVEQ+TKIL+PP +++KL KE+++P+ + KYRV W ++Q R+R+KE E ++ERVAY Q+DWHDFVVVE VD+QPNE GN PPPT PEE+GAR +A+ER E+ Sbjct: 35 PAVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLTTTDPYHAYYRHKVTEFREGRGQEPSA--AVPKIMQQQLLISQKVQAQVMQETIVPKEAPPDFEFMADAPSISYFDLDVVKLTAQFVARNGRSFLTQLMAKEQRNYTFDFLRPQHSLFHYFTKLVEQYTKILIPPKGLLQKLKKEAENPKDILDQVKYRVEWAKFQERERRKEEEERERERVAYAQVDWHDFVVVETVDFQPNEQGNLPPPTTPEELGARILAQERYEK 308 HSP 2 Score: 102.834 bits (255), Expect = 5.113e-23 Identity = 49/124 (39.52%), Postives = 82/124 (66.13%), Query Frame = 2 Query: 1151 VLIKTYDPKAKSKRQT-----DEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKGE-KYIWDGHAAT 1504 ++ K YDPK + R T + FL+SP+ ++I S+ +H+ +GLL+P W + ++R+ + + ++ + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K E K WDGH A+ Sbjct: 381 IIRKDYDPKGAAVRPTAPAPTQDEFLVSPI-TGERIPASKMQEHMRIGLLDPRWIQEQERSIRERQNQEEVYAHGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEDKVTWDGHTAS 503
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001822.1 (pep scaffold:Pmarinus_7.0:GL491554:236:5412:-1 gene:ENSPMAG00000001655.1 transcript:ENSPMAT00000001822.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.1434 bits (126), Expect = 9.785e-8 Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 2 Query: 92 IPPPDVR------NIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV 256 +PPP VR NI+D+ A+FVARNGP+FE K + +N KF FL + +N YY +V Sbjct: 1 VPPPRVRADQEQRNIIDKLAQFVARNGPEFEKMTKQKQRDNPKFAFLFRGEYFN-YYQYKV 60
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Sea Lamprey
Match: sfswap (splicing factor SWAP [Source:ZFIN;Acc:ZDB-GENE-040426-931]) HSP 1 Score: 48.1358 bits (113), Expect = 6.197e-6 Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 2 Query: 59 PEHVAPKFGVIIPPP-DVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESI 289 PE + G+ +P IV+RTA FV + G FE +K +A NS+F+FL NPYY +K+ +G I Sbjct: 161 PEELKLPSGMEVPATFKTHAIVERTAGFVCKQGTQFEIMLKKKQARNSQFDFLRFDHYLNPYYKHILKRMKDGKYTHI 238
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Sea Lamprey
Match: sfswap (splicing factor SWAP [Source:ZFIN;Acc:ZDB-GENE-040426-931]) HSP 1 Score: 47.7506 bits (112), Expect = 7.863e-6 Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 2 Query: 59 PEHVAPKFGVIIPPP-DVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESI 289 PE + G+ +P IV+RTA FV + G FE +K +A NS+F+FL NPYY +K+ +G I Sbjct: 161 PEELKLPSGMEVPATFKTHAIVERTAGFVCKQGTQFEIMLKKKQARNSQFDFLRFDHYLNPYYKHILKRMKDGKYTHI 238
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Nematostella
Match: EDO49841 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RES3]) HSP 1 Score: 309.301 bits (791), Expect = 4.428e-94 Identity = 152/278 (54.68%), Postives = 201/278 (72.30%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIE--GTVESISAK----VSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQV 889 P G+I PPP+VRNIVD+TA FVARNGP+FE+R++ NE NN KFNFLN DPY Y+ +VK E G V S+ +S P + Q I ++ PKE P E+EF+ DPPSI++L+LDIV+LTAQFVARNGRQFLT LM REQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP +I EKL ++ P + KYRV W ++Q ++++K + +KERVA+ +DWHDFVVVE V+++ +E GN PPP E++GAR +A+ER E+V Sbjct: 27 PTIGIIYPPPEVRNIVDKTASFVARNGPEFESRIRQNEINNPKFNFLNQGDPYYAYFLHKVKDFKENLGKVPEPSSAPGPGISKPKPLMQQQ---VLISDLNIPKEPPPEYEFMADPPSISALDLDIVKLTAQFVARNGRQFLTNLMQREQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPANIKEKLKEDIHDPHKVLDRVKYRVEWVKHQEKEKQKLEDEREKERVAFASVDWHDFVVVETVEFKDDETGNLPPPVTQEQLGARILAQERYEKV 301 HSP 2 Score: 100.523 bits (249), Expect = 7.503e-22 Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = 2 Query: 1160 KTYDPKAKSKRQTD---EVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGI--EETVIGRKVGEEDAKKGEKYIWDGHAATQEPYISRQSDLTAGRGDDKKDSAA----------DIDRIGPQA 1603 + YDPKA + E +LISP+ +++ +H+ + LL+P W+E RD+ +K Q++ F G + +LK +AERRTDIFG EET+IGRK+GEE+ K+ EK WDGH A+ SR++ AG D++ A D +RIGP+A Sbjct: 368 RDYDPKAAKPQAPPLPPEKYLISPI-TGERVPAEAMAEHMKINLLDPRWKEQRDKAIMDKKQQEEVFAEGIAIGSSLKQLAERRTDIFGAGDEETIIGRKIGEEEDKRPEKVTWDGHTASMA-STSRRAQ--AGVTLDQQIEAIHKSKGLAPSDDRERIGPRA 526
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Nematostella
Match: EDO28442 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T6G4]) HSP 1 Score: 227.254 bits (578), Expect = 1.137e-69 Identity = 102/174 (58.62%), Postives = 138/174 (79.31%), Query Frame = 2 Query: 365 PKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 PKE P E+EF+ DPPSI++L+LDIV+LTAQFVAR+GRQFLT LM REQRNY FDFLRPQH++F+YFTKLVEQ+TK+L+PP +I EKL ++ P + KYRV W ++Q ++++K + +KERVA+ +DWHDFVVVE V+++ +E GN PPP E++GAR +A+ER E+ Sbjct: 13 PKEPPPEYEFMADPPSISALDLDIVKLTAQFVARDGRQFLTNLMQREQRNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPANIKEKLKEDIHDPHKVLDRVKYRVEWVKHQEKEKQKLEDEREKERVAFASVDWHDFVVVETVEFKDDETGNLPPPVTQEQLGARILAQERYEK 186
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Nematostella
Match: EDO48222 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKB9]) HSP 1 Score: 54.299 bits (129), Expect = 1.849e-7 Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 2 Query: 92 IPPPD---VRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRV 256 PPPD ++NI+D+ A FVARNG FE K + NN KF+FL S Y+ YY RV Sbjct: 11 FPPPDDQELKNIIDKLANFVARNGSKFEDMTKEKQKNNPKFSFLYSGQNYHNYYRWRV 68
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Medaka
Match: sf3a1 (splicing factor 3a subunit 1 [Source:NCBI gene;Acc:101157948]) HSP 1 Score: 330.102 bits (845), Expect = 1.560e-101 Identity = 169/278 (60.79%), Postives = 212/278 (76.26%), Query Frame = 2 Query: 74 PKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKV------SVPTAMKLAQDT-PKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQ 886 P G+I PPP+VRNIVD+TA FVARNGP+FEAR++ NE NN KFNFLN DPY+ YY +V + EG + SA V ++ + +L Q + IQE PKE P EFEFI DPPSI++ +LD+V+LTAQFVARNGRQFLTQLM +EQRNY FDFLRPQH++F+YFTKLVEQ+TKIL+PP ++ KL +E+++P+ M +YRV W +YQ R+RKKE E +KERVAY QIDWHDFVVVE VD+QPNE G+FPPPT PEE+GAR + +ER E+ Sbjct: 29 PIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSAAVPKVMQQAMQQSQQLPQKVQSQVIQETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLAKLKREAENPKEVMDQVRYRVEWAKYQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARILIQERYEK 306 HSP 2 Score: 110.153 bits (274), Expect = 1.737e-24 Identity = 56/123 (45.53%), Postives = 83/123 (67.48%), Query Frame = 2 Query: 1151 VLIKTYDPKAK----SKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKG-EKYIWDGHAAT 1504 ++ K YDPKA S DE +LISP+ +KI S+ +H+ +GLL+P W E RDR+ +++ ED + G +++ +LK +AERRTDIFG+EET IG+K+GEE+ +K EK WDGH+ + Sbjct: 379 IIRKDYDPKASKPMPSVAAPDE-YLISPI-TGEKIPASKMQEHMRIGLLDPRWLEQRDRSIRDRQTEDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGS 499
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Medaka
Match: sfswap (splicing factor SWAP [Source:NCBI gene;Acc:101155209]) HSP 1 Score: 56.6102 bits (135), Expect = 9.818e-8 Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 2 Query: 83 GVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYY 244 ++ PPPD++ ++D+ AE+VARNG FEA V+ N+ +F+FL S YN YY Sbjct: 450 AIVPPPPDIQPVIDKLAEYVARNGVKFEASVRAK--NDPRFDFLQSWHQYNIYY 501 HSP 2 Score: 50.0618 bits (118), Expect = 9.659e-6 Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 2 Query: 68 VAPKFGVIIPPPDV--------RNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPY-NPYYNQRVKQCIEG 274 VAP G+ IPP DV NI++RTA FV + G FE +K +A NS+F+FL D Y NPYY +K +G Sbjct: 178 VAPP-GLDIPP-DVELPATVKTHNIIERTANFVCQQGAQFEIVLKAKQAGNSQFDFLR-FDHYLNPYYKHILKAMKDG 252
BLAST of Splicing factor 3A subunit 1 vs. Planmine SMEST
Match: SMESG000072847.1 (SMESG000072847.1) HSP 1 Score: 984.941 bits (2545), Expect = 0.000e+0 Identity = 582/584 (99.66%), Postives = 582/584 (99.66%), Query Frame = 2 Query: 44 MTITEPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGEQVVNRWIEDNKTQXXXXXXXXXXXXXXXXKTGVHGEKENXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXTTFKQPVSDAARTNLIKPEEVLIKTYDPKAKSKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKGEKYIWDGHAATQEPYISRQSDLTAGRGDDKKDSAADIDRIGPQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATEPNESPDQDNQGQPIE 1795 MTITEPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERG QVVNRWIEDNKTQEEEENEEEEEEEIEEEKTGVHGEKENDDMEVEDMEVSDEEEDSIPAPPPPMPPGPATTFKQPVSDAARTNLIKPEEVLIKTYDPKAKSKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKGEKYIWDGHAATQEPYISRQSDLTAGRGDDKKDSAADIDRIGPQAVPQVVP PTITIIVNTPIISQAVAQIAPPPPPPPPPMAMVPLPAQIATEPNESPDQDNQGQPIE Sbjct: 1 MTITEPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANNSKFNFLNSLDPYNPYYNQRVKQCIEGTVESISAKVSVPTAMKLAQDTPKAIQEVFEPKETPAEFEFIVDPPSINSLELDIVRLTAQFVARNGRQFLTQLMNREQRNYLFDFLRPQHNMFSYFTKLVEQFTKILLPPNDIIEKLNKESKSPEIFMKNCKYRVAWDRYQARQRKKEMEAEDKERVAYGQIDWHDFVVVEMVDYQPNEVGNFPPPTIPEEVGARAIAEERGVQVVNRWIEDNKTQEEEENEEEEEEEIEEEKTGVHGEKENDDMEVEDMEVSDEEEDSIPAPPPPMPPGPATTFKQPVSDAARTNLIKPEEVLIKTYDPKAKSKRQTDEVFLISPLGDNKKITTSQANQHIHVGLLNPSWREHRDRNTKNKLQEDTPFTSGPNVDYNLKMMAERRTDIFGIEETVIGRKVGEEDAKKGEKYIWDGHAATQEPYISRQSDLTAGRGDDKKDSAADIDRIGPQAVPQVVPAPTITIIVNTPIISQAVAQIAPPPPPPPPPMAMVPLPAQIATEPNESPDQDNQGQPIE 584
BLAST of Splicing factor 3A subunit 1 vs. Planmine SMEST
Match: SMESG000073188.1 (SMESG000073188.1) HSP 1 Score: 46.9802 bits (110), Expect = 2.700e-6 Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = -2 Query: 2107 SDEVVKIIFNKPPLNVFSIGIKEEYPKISDKVITFLLPFSTTHLCELSF*TLV 2265 +D +K+ F K F I ++EEYP +S IT LL F+T+ LCEL F TL Sbjct: 16 TDRSLKMEFTKMSNEYFWIFVQEEYPSLSKTAITILLQFATSFLCELGFSTLT 68
BLAST of Splicing factor 3A subunit 1 vs. Planmine SMEST
Match: SMESG000028317.1 (SMESG000028317.1) HSP 1 Score: 50.447 bits (119), Expect = 5.863e-6 Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = -2 Query: 2107 DEVVKIIFNKPPLNVFSIGIKEEYPKISDKVITFLLPFSTTHLCELSF*TLV 2262 D +K++F + L+ F + I+ EYP IS+ V+ LLPF++T+LCE F L+ Sbjct: 1090 DRTLKLMFQEKDLDEFWLSIQNEYPTISNYVMNTLLPFASTYLCEAGFSALL 1141 The following BLAST results are available for this feature:
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Splicing factor 3A subunit 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Splicing factor 3A subunit 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of Splicing factor 3A subunit 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of Splicing factor 3A subunit 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30021536 ID=SMED30021536|Name=Splicing factor 3A subunit 1|organism=Schmidtea mediterranea sexual|type=transcript|length=2266bpback to top protein sequence of SMED30021536-orf-1 >SMED30021536-orf-1 ID=SMED30021536-orf-1|Name=SMED30021536-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=591bp MTITEPEHVAPKFGVIIPPPDVRNIVDRTAEFVARNGPDFEARVKINEANback to top Annotated Terms
The following terms have been associated with this transcript:
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