RNA-binding motif, single-stranded-interacting protein

Overview
NameRNA-binding motif, single-stranded-interacting protein
Smed IDSMED30021524
Length (bp)3477
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding motif, single-stranded-interacting protein (SMED30021524) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding motif, single-stranded-interacting protein (SMED30021524) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding motif, single-stranded-interacting protein (SMED30021524) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding motif, single-stranded-interacting protein (SMED30021524) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021524

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30021524h1SMcG0013044 SmedASXL_017051SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
epidermisSMED30021524h1SMcG0013044 dd_Smed_v4_2612_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 102.834 bits (255), Expect = 2.162e-22
Identity = 60/202 (29.70%), Postives = 103/202 (50.99%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQ 1212
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     +G+++
Sbjct:   59 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWHREGEVR 251
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 102.064 bits (253), Expect = 3.171e-22
Identity = 60/202 (29.70%), Postives = 103/202 (50.99%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQ 1212
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     +G+++
Sbjct:   39 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWHREGEVR 231
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 100.908 bits (250), Expect = 5.880e-22
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD G ++
Sbjct:   26 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 197
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 100.908 bits (250), Expect = 5.880e-22
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD G ++
Sbjct:   26 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 197
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907])

HSP 1 Score: 100.908 bits (250), Expect = 5.880e-22
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD G ++
Sbjct:   26 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 197
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Match: exc-7 (pep chromosome:WBcel235:II:9575971:9581490:1 gene:WBGene00001368.1 transcript:F35H8.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:exc-7)

HSP 1 Score: 83.1889 bits (204), Expect = 2.848e-16
Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:  631 SKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSH--GKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRL---AVKFAYENEKDDL----NVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY---TGTGFVRYSSADEAQRAVDHMNG 1077
            SKTNL IN L +  T E VR+L   I E +SCK +     G+  G GF++   E DA      LR     +G RL    +K +Y    +D     N+YV  +P+  S T   LE +F+ +GQ+++ ++L SDN      G GFVR+   DEA  A+  +NG
Sbjct:   40 SKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA------LRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPK--SMTLHELESIFRPFGQIITSRIL-SDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 82.0333 bits (201), Expect = 7.145e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKP-VICKLADKGGRRMAH 1155
            N+  S TNLYI GL  +  D+ +R +        S KA+M      C+G GF+D  +   A   +  L      +G +  +    + E+D  N+Y+ NLP    FT   LE     +G V+S ++L++ DNQ  G GF R  S ++ +  +  +NG +    + + P ++ K AD  GR+  H
Sbjct:  101 NTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNT----EGVQAQMAKLQQQEQDPTNLYIANLPL--DFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQADT-GRKSKH 276
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 82.0333 bits (201), Expect = 7.145e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKP-VICKLADKGGRRMAH 1155
            N+  S TNLYI GL  +  D+ +R +        S KA+M      C+G GF+D  +   A   +  L      +G +  +    + E+D  N+Y+ NLP    FT   LE     +G V+S ++L++ DNQ  G GF R  S ++ +  +  +NG +    + + P ++ K AD  GR+  H
Sbjct:  101 NTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNT----EGVQAQMAKLQQQEQDPTNLYIANLPL--DFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQADT-GRKSKH 276
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 81.2629 bits (199), Expect = 8.056e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKP-VICKLADKGGRRMAH 1155
            N+  S TNLYI GL  +  D+ +R +        S KA+M      C+G GF+D  +   A   +  L      +G +  +    + E+D  N+Y+ NLP    FT   LE     +G V+S ++L++ DNQ  G GF R  S ++ +  +  +NG +    + + P ++ K AD  GR+  H
Sbjct:  101 NTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNT----EGVQAQMAKLQQQEQDPTNLYIANLPL--DFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQADT-GRKSKH 276
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Match: sup-26 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8])

HSP 1 Score: 81.2629 bits (199), Expect = 8.056e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKP-VICKLADKGGRRMAH 1155
            N+  S TNLYI GL  +  D+ +R +        S KA+M      C+G GF+D  +   A   +  L      +G +  +    + E+D  N+Y+ NLP    FT   LE     +G V+S ++L++ DNQ  G GF R  S ++ +  +  +NG +    + + P ++ K AD  GR+  H
Sbjct:  101 NTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNT----EGVQAQMAKLQQQEQDPTNLYIANLPL--DFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISALNGGRFDTMSKEGPALLIKQADT-GRKSKH 276
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0077172)

HSP 1 Score: 95.9005 bits (237), Expect = 7.288e-20
Identity = 58/177 (32.77%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY--TGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GLQ+  TD+ +  +        S KA++  +  KC+G GF+D      AE  ++ L+      G  +  + A + E+D  N+Y+ NLP    F  ++LE +   YGQVVS ++L+ D Q    G GF R  S ++ ++ +   NG  +    D  P++ K AD G ++
Sbjct:  228 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQ------GKGVQAQMAKQQEQDPTNLYIANLP--PHFKETDLEAMLSKYGQVVSTRILR-DQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKD--PLLVKFADGGPKK 393
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0308859)

HSP 1 Score: 95.1301 bits (235), Expect = 1.072e-19
Identity = 58/177 (32.77%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY--TGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GLQ+  TD+ +  +        S KA++  +  KC+G GF+D      AE  ++ L+      G  +  + A + E+D  N+Y+ NLP    F  ++LE +   YGQVVS ++L+ D Q    G GF R  S ++ ++ +   NG  +    D  P++ K AD G ++
Sbjct:  240 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQ------GKGVQAQMAKQQEQDPTNLYIANLP--PHFKETDLEAMLSKYGQVVSTRILR-DQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKD--PLLVKFADGGPKK 405
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0301599)

HSP 1 Score: 91.2781 bits (225), Expect = 4.248e-19
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNK----QMPD-GSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY--TGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GLQ+  TD+ +  +        S KA++  +  KC+G GF+D      AE  ++ L+ K    QM   G  +  + A + E+D  N+Y+ NLP    F  ++LE +   YGQVVS ++L+ D Q    G GF R  S ++ ++ +   NG  +    D  P++ K AD G ++
Sbjct:   18 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLP--PHFKETDLEAMLSKYGQVVSTRILR-DQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKD--PLLVKFADGGPKK 194
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333287)

HSP 1 Score: 91.2781 bits (225), Expect = 4.248e-19
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNK----QMPD-GSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY--TGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GLQ+  TD+ +  +        S KA++  +  KC+G GF+D      AE  ++ L+ K    QM   G  +  + A + E+D  N+Y+ NLP    F  ++LE +   YGQVVS ++L+ D Q    G GF R  S ++ ++ +   NG  +    D  P++ K AD G ++
Sbjct:   18 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLP--PHFKETDLEAMLSKYGQVVSTRILR-DQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKD--PLLVKFADGGPKK 194
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Match: shep (gene:FBgn0052423 transcript:FBtr0333289)

HSP 1 Score: 87.4261 bits (215), Expect = 7.575e-18
Identity = 59/183 (32.24%), Postives = 96/183 (52.46%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNK----QMPDGSRLAVKFAYEN--EKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQY--TGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GLQ+  TD+ +  +        S KA++  +  KC+G GF+D      AE  ++ L+ K    QM   +++ +   +    E+D  N+Y+ NLP    F  ++LE +   YGQVVS ++L+ D Q    G GF R  S ++ ++ +   NG  +    D  P++ K AD G ++
Sbjct:   18 LSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQM---AKVGIWVLHRPAIEQDPTNLYIANLP--PHFKETDLEAMLSKYGQVVSTRILR-DQQMNSKGVGFARMESREKCEQIIQMFNGNTIPGAKD--PLLVKFADGGPKK 192
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Match: rbms1a (RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967])

HSP 1 Score: 105.916 bits (263), Expect = 1.074e-23
Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKL-----ILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGD 1257
            +SKTNLYI GL    TD  +  L     +  S KA++  +  KC+G GF+D  + V A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE L K +GQVVS ++L+  N  + G GF R  S ++    + H NG+ +     +LG  + P++CK AD GG++      + +  G     D +++      +SG +++ D
Sbjct:   54 LSKTNLYIRGLPPGTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKT------NGVQAQMAKQQEQDPTNLYLSNLP--VSMDEQELENLLKPFGQVVSTRILRDTNGMSRGVGFARMESTEKCDAVISHFNGKFIKSSSGMLGASE-PLLCKFAD-GGQKKRQSQAKYIPNGRTWTRDAEVR------LSGMTLTYD 255
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51])

HSP 1 Score: 103.219 bits (256), Expect = 8.745e-23
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K + QV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+    G Q   +G+
Sbjct:   55 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELESMLKPFSQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD-GGQKKRQNQGKYHQNGRQWSREGE 245
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Match: rbms2b (RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51])

HSP 1 Score: 103.219 bits (256), Expect = 1.022e-22
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K + QV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+    G Q   +G+
Sbjct:   55 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELESMLKPFSQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVAVPTEPLLCKFAD-GGQKKRQNQGKYHQNGRQWSREGE 245
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2])

HSP 1 Score: 101.679 bits (252), Expect = 2.871e-22
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L++      + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + L  G     D D
Sbjct:   52 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKS------TGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELEAMLKSFGQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFAD-GGQKKRQNQNKYLQNGRSWTRDAD 242
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Match: rbms2a (RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2])

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-22
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L++      + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + L  G     D D
Sbjct:   50 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKS------TGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELEAMLKSFGQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPTEPLLCKFAD-GGQKKRQNQNKYLQNGRSWTRDAD 240
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 103.219 bits (256), Expect = 6.802e-23
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  S TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ +  G     +G+
Sbjct:   29 LSKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESLLKPFGQVISTRILRDASGTSRGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFAD-GGQKKRQTQGKYIQNGRGWGREGE 219
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Match: rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:NCBI gene;Acc:100036596])

HSP 1 Score: 103.99 bits (258), Expect = 7.984e-23
Identity = 62/202 (30.69%), Postives = 105/202 (51.98%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGR--KLILG--NDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQ 1212
            +SKTNLYI GL  + TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+  K + G     +P++CK AD GG++      + +  G     +G+++
Sbjct:   52 LSKTNLYIRGLSPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELESMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVISHFNGKFIKTLPGVSAPAEPLLCKFAD-GGQKKRQNQNKYVQNGRAWPREGEVR 244
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 102.834 bits (255), Expect = 8.347e-23
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  S TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ +  G     +G+
Sbjct:   24 LSKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESLLKPFGQVISTRILRDASGTSRGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFAD-GGQKKRQTQGKYIQNGRGWGREGE 214
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 103.605 bits (257), Expect = 8.393e-23
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  S TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ +  G     +G+
Sbjct:   48 LSKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESLLKPFGQVISTRILRDASGTSRGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFAD-GGQKKRQTQGKYIQNGRGWGREGE 238
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:NCBI gene;Acc:100495159])

HSP 1 Score: 102.834 bits (255), Expect = 8.995e-23
Identity = 62/200 (31.00%), Postives = 103/200 (51.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  S TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ +  G     +G+
Sbjct:   30 LSKTNLYIRGLHPSTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPGAAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESLLKPFGQVISTRILRDASGTSRGVGFARMESTEKCEAVISHFNGKYIKTPPGVPAPQEPLLCKFAD-GGQKKRQTQGKYIQNGRGWGREGE 220
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776])

HSP 1 Score: 105.145 bits (261), Expect = 1.946e-23
Identity = 63/204 (30.88%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDI 1209
            N  +SKTNLYI GLQ   TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +     P++CK AD GG +     G+ +  G     +GD+
Sbjct:   24 NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFAD-GGPKKRQSQGRYVQNGRAWPRNGDM 218
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776])

HSP 1 Score: 104.375 bits (259), Expect = 2.463e-23
Identity = 63/204 (30.88%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDI 1209
            N  +SKTNLYI GLQ   TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +     P++CK AD GG +     G+ +  G     +GD+
Sbjct:   24 NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFAD-GGPKKRQSQGRYVQNGRAWPRNGDM 218
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Match: Rbms2 (RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776])

HSP 1 Score: 103.99 bits (258), Expect = 4.516e-23
Identity = 63/204 (30.88%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDI 1209
            N  +SKTNLYI GLQ   TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +     P++CK AD GG +     G+ +  G     +GD+
Sbjct:   52 NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFAD-GGPKKRQSQGRYVQNGRAWPRNGDM 246
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 102.064 bits (253), Expect = 2.870e-22
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  + TD+ +  L     +  S KA++     KC+G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     DG+
Sbjct:   59 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK------ANGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWPRDGE 249
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Match: Rbms1 (RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774])

HSP 1 Score: 100.523 bits (249), Expect = 7.410e-22
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  + TD+ +  L     +  S KA++     KC+G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     DG+
Sbjct:   26 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK------ANGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWPRDGE 216
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Match: sp|Q3ZC34|RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus OX=9913 GN=RBMS2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.356e-22
Identity = 63/201 (31.34%), Postives = 103/201 (51.24%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDI 1209
            +SKTNLYI GLQ S TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +     P++CK AD GG +     G+ +  G     +GD+
Sbjct:   53 LSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFAD-GGPKKRQNQGKFVQNGRAWPRNGDM 244
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Match: sp|Q8VC70|RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus OX=10090 GN=Rbms2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.159e-22
Identity = 63/204 (30.88%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:  619 NSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDI 1209
            N  +SKTNLYI GLQ   TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ +     G GF R  S ++ +  + H NG+ +     +     P++CK AD GG +     G+ +  G     +GD+
Sbjct:   52 NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFAD-GGPKKRQSQGRYVQNGRAWPRNGDM 246
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Match: sp|P29558|RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens OX=9606 GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.038e-21
Identity = 60/202 (29.70%), Postives = 103/202 (50.99%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQ 1212
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     +G+++
Sbjct:   59 LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWHREGEVR 251
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Match: sp|Q5PQP1|RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.832e-21
Identity = 57/180 (31.67%), Postives = 94/180 (52.22%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRR 1146
            +SKTNLYI GL  + TD+ +  L     +  S KA++     KC+G GF+D  +   A+K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD G ++
Sbjct:   59 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK------ASGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 230
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Match: sp|Q91W59|RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus OX=10090 GN=Rbms1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.008e-21
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG--KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL  + TD+ +  L     +  S KA++     KC+G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+ S     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++      + +  G     DG+
Sbjct:   59 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK------ANGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFAD-GGQKKRQNPNKYIPNGRPWPRDGE 249
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Match: A0A5K3F7I0 (Uncharacterized protein OS=Mesocestoides corti OX=53468 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.457e-60
Identity = 120/215 (55.81%), Postives = 149/215 (69.30%), Query Frame = 1 
Query:  532 KLSGFDAVQHFGSLPPVRIFDQTQIRKPKNSIM-SKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLIL----GNDD--------KPVICKLADKG 1137
            +  G+D+++HFG+LP      QT   K   S+  SKTNLYI+GL ES TDESVRALV+ ++ PKSCKAM+ +GKC+GSGFIDCATE DA K +  L       G +L VK+A ENEKD LNVYVRNLP ++ FT   LE LF+ YGQV SVKLL++D  YTG GFVR++SAD+AQRAV+ MN R+ +L    GN D        KP+ CKLADK 
Sbjct:  188 QFRGYDSLKHFGALP------QTMNHKRNKSMTTSKTNLYISGLSESDTDESVRALVEDVVRPKSCKAMLLNGKCKGSGFIDCATEEDAIKALNHLSEMAKNGGRKLNVKYALENEKDLLNVYVRNLP-KTGFTKETLENLFRPYGQVTSVKLLETDGVYTGIGFVRFASADQAQRAVESMNERRYVLTGGNGNGDSSNDNGSAKPICCKLADKA 395
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Match: A0A4Z2DDZ6 (RNA-binding motif, single-stranded-interacting protein OS=Schistosoma japonicum OX=6182 GN=EWB00_001860 PE=4 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.127e-60
Identity = 111/202 (54.95%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  544 FDAVQHFGSLPPVRIFDQTQI-RKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            FD+++HFGS+P      QTQ  R+ K+++ SKTNLYI+GL ES TDE+VR+LV+ I++PKSCKAM+ +G+CRGSGFIDCATE DAEK    +      +G +L+VK+AYENEKD LNVYVRNLPR   F+   LE LF+ +G V SVKLL++   +TG GFVR+++A++A++AV+ MN  K ++   DKP+ CKLADK   R
Sbjct:  178 FDSLKHFGSVP------QTQHGRRNKSTVTSKTNLYISGLSESDTDETVRSLVENIVQPKSCKAMVINGRCRGSGFIDCATEEDAEKAKAHILECARTNGRKLSVKYAYENEKDALNVYVRNLPRE-GFSKEMLENLFQKFGHVTSVKLLETITGFTGIGFVRFATAEQAEKAVEQMNEAKHVVRGGDKPITCKLADKADPR 372
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Match: A0A183NRV6 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS4842 PE=4 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 1.055e-59
Identity = 110/202 (54.46%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  544 FDAVQHFGSLPPVRIFDQTQI-RKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            FD+++HFGS+P      QTQ  R+ K+++ SKTNLYI+GL ES TD++VR+LV+ I++PKSCKAM+ +G+CRGSGFIDCA+E DAEK    +      +G +L+VK+AYENEKD LNVYVRNLPR   F+   LE LF+ +G V SVKLL++   +TG GFVR+++A++A++AV+ MN  K I+   DKP+ CKLADK   R
Sbjct:  178 FDSLKHFGSVP------QTQHGRRNKSTVTSKTNLYISGLSESDTDDTVRSLVENIVQPKSCKAMVVNGRCRGSGFIDCASEEDAEKAKAHILECARTNGRKLSVKYAYENEKDALNVYVRNLPRE-GFSKEMLESLFQKFGHVTSVKLLETVTGFTGIGFVRFATAEQAEKAVEQMNEAKHIVRGGDKPITCKLADKADPR 372
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Match: A0A183JBI4 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS39 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.000e-59
Identity = 110/202 (54.46%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  544 FDAVQHFGSLPPVRIFDQTQI-RKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            FD+++HFGS+P      QTQ  R+ K+++ SKTNLYI+GL ES TD++VR+LV+ I++PKSCKAM+ +G+CRGSGFIDCA+E DAEK    +      +G +L+VK+AYENEKD LNVYVRNLPR   F+   LE LF+ +G V SVKLL++   +TG GFVR+++A++A++AV+ MN  K I+   DKP+ CKLADK   R
Sbjct:  178 FDSLKHFGSVP------QTQHGRRNKSTVTSKTNLYISGLSESDTDDTVRSLVENIVQPKSCKAMVVNGRCRGSGFIDCASEEDAEKAKAHILECARTNGRKLSVKYAYENEKDALNVYVRNLPRE-GFSKEMLESLFQKFGHVTSVKLLETVTGFTGIGFVRFATAEQAEKAVEQMNEAKHIVRGGDKPITCKLADKADPR 372
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Match: G4VM73 (Putative single-stranded DNA-binding protein mssp-1 OS=Schistosoma mansoni OX=6183 GN=Smp_082280 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.056e-59
Identity = 110/202 (54.46%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  544 FDAVQHFGSLPPVRIFDQTQI-RKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRR 1146
            FD+++HFGS+P      QTQ  R+ K+++ SKTNLYI+GL ES TD++VR+LV+ I++PKSCKAM+ +G+CRGSGFIDCA+E DAEK    +      +G +L+VK+AYENEKD LNVYVRNLPR   F+   LE LF+ +G V SVKLL++   +TG GFVR+++A++A++AV+ MN  K I+   DKP+ CKLADK   R
Sbjct:  178 FDSLKHFGSVP------QTQHGRRNKSTVTSKTNLYISGLSESDTDDTVRSLVENIVQPKSCKAMVVNGRCRGSGFIDCASEEDAEKAKAHILECARTNGRKLSVKYAYENEKDALNVYVRNLPRE-GFSKEMLESLFQKFGHVTSVKLLETVTGFTGIGFVRFATAEQAEKAVEQMNEAKHIVRGGDKPITCKLADKADPR 372
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850])

HSP 1 Score: 105.145 bits (261), Expect = 1.792e-23
Identity = 78/264 (29.55%), Postives = 129/264 (48.86%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKL-----ILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKI---NAAYNSLQVMSSQ--------PYGSH------QGPSWLS 1344
            +SKTNLYI GL  S TD  +  L     +  S KA++  +  KC+G GF+D  + V A+K +  L+N      + +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+  +  + G GF R  S ++    + H NG+ +     +LG  + P++CK AD GG++      + +  G     D +++      +SG +++ D +     N  Y S   M ++        PY S       Q PSW++
Sbjct:   53 LSKTNLYIRGLPPSTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKN------NGVQAQMAKQQEQDPTNLYLSNLP--VSMDEQELENLLKPFGQVISTRILRDAHGVSRGVGFARMESTEKCDAVISHFNGKFIKSASGMLGASE-PLLCKFAD-GGQKKRLSQSKYIPNGRTWTRDAEVR------LSGITLTYDPNATALQNGYYASPYSMGNRIMPQTAVTPYISPVSTYPVQNPSWMT 300
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:103034850])

HSP 1 Score: 102.834 bits (255), Expect = 4.081e-23
Identity = 64/203 (31.53%), Postives = 106/203 (52.22%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKL-----ILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQ 1212
            +SKTNLYI GL  S TD  +  L     +  S KA++  +  KC+G GF+D  + V A+K +  L+N      + +  + A + E+D  N+Y+ NLP   S     LE L K +GQV+S ++L+  +  + G GF R  S ++    + H NG+ +     +LG  + P++CK AD GG++      + +  G     D +++
Sbjct:   27 LSKTNLYIRGLPPSTTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPVSAQKAVAALKN------NGVQAQMAKQQEQDPTNLYLSNLP--VSMDEQELENLLKPFGQVISTRILRDAHGVSRGVGFARMESTEKCDAVISHFNGKFIKSASGMLGASE-PLLCKFAD-GGQKKRLSQSKYIPNGRTWTRDAEVR 219
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:NCBI gene;Acc:103030356])

HSP 1 Score: 102.834 bits (255), Expect = 8.464e-23
Identity = 76/260 (29.23%), Postives = 122/260 (46.92%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLILG----NDDKPVICKLADKG-------------GRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVM-SGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLS 1344
            +SKTNLYI GL  + TD  +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   +    +LE + K +GQVVS ++L+  N  + G GF R  S ++    + H NG+ L +        +P++CK AD G             GR  A  G   L+ G+    D       NG   S +S++  +    A    L  +S+ P    Q PSW++
Sbjct:   53 LSKTNLYIRGLPPATTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVNALKT------NGVQAQMAKQQEQDPTNLYISNLPL--TMDEQDLESMLKPFGQVVSTRILRDANGASRGVGFARMESTEKCDAVISHFNGKFLKMPAGVMAPSEPLLCKFADGGQKKRQSQNKYVPNGRAWARDGEARLA-GMTLTYDPTAAAMQNGFYPSPYSITNRLIPQTAMSPYLSQVSTYPV---QNPSWVT 300
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Match: RBMS1 (RNA binding motif single stranded interacting protein 1 [Source:NCBI gene;Acc:103030356])

HSP 1 Score: 102.449 bits (254), Expect = 9.418e-23
Identity = 76/260 (29.23%), Postives = 122/260 (46.92%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLILG----NDDKPVICKLADKG-------------GRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVM-SGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLS 1344
            +SKTNLYI GL  + TD  +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   +    +LE + K +GQVVS ++L+  N  + G GF R  S ++    + H NG+ L +        +P++CK AD G             GR  A  G   L+ G+    D       NG   S +S++  +    A    L  +S+ P    Q PSW++
Sbjct:   27 LSKTNLYIRGLPPATTDHDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVNALKT------NGVQAQMAKQQEQDPTNLYISNLPL--TMDEQDLESMLKPFGQVVSTRILRDANGASRGVGFARMESTEKCDAVISHFNGKFLKMPAGVMAPSEPLLCKFADGGQKKRQSQNKYVPNGRAWARDGEARLA-GMTLTYDPTAAAMQNGFYPSPYSITNRLIPQTAMSPYLSQVSTYPV---QNPSWVT 274
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2-like [Source:NCBI gene;Acc:103040012])

HSP 1 Score: 102.834 bits (255), Expect = 1.008e-22
Identity = 63/200 (31.50%), Postives = 102/200 (51.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L++        +  + A + E+D  N+Y+ NLP   S     LE + K +GQVVS ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ L  G     D D
Sbjct:   55 LSKTNLYIRGLHPGTTDQDLVKLCQPFGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKS------GGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELEAMLKSFGQVVSTRVLRDANGTSRGVGFARMESTEKCEAIIQHFNGKYIKTPPGVPVPAEPLLCKFAD-GGQKKRQNHGKFLHNGRPWARDTD 245
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 95.9005 bits (237), Expect = 5.817e-21
Identity = 54/180 (30.00%), Postives = 93/180 (51.67%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSH--GKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLIL----GNDDKPVICKLADKGGRR 1146
            +SKTNLYI GL    TD+ +  L     +  S KA++     +C+G GF+   +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+  N  + G GF R  S ++ +  + H NG+ + +        +P++CK AD G ++
Sbjct:   55 LSKTNLYIRGLPPGTTDQDLTKLCQPYGKIVSTKAILDKNTNQCKGYGFVHFDSPAAAQKAVTALK------ANGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELEGMLKPFGQVISTRILRDANGTSRGVGFARMESTEKCEAVIQHFNGKFIQIPPGVPAPSEPLLCKFADGGQKK 226
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008168.1 (pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 gene:ENSPMAG00000007358.1 transcript:ENSPMAT00000008168.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 90.5077 bits (223), Expect = 2.897e-19
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSD-NQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKG-GRRMAH 1155
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  +C+G GF+D      A+K +  L+       S +  + A + E+D  N+Y+ NLP   +     LE + K +G V+S ++L+       G GF R  S ++ +  +   NG+ L     +    +P++CK AD G  +R++H
Sbjct:   32 LSKTNLYIRGLPPGTTDQDLVKLCQPYGKIVSTKAILDKTTNQCKGYGFVDFDGPSAAQKAVTALK------ASGIQAQMAKQQEQDPTNLYISNLP--VTIDEQELEGMLKQFGHVISTRILRDIVGTSRGVGFARMESTEKCEAVIQRFNGKFLTSPPGVPVPSEPLLCKFADGGQKKRLSH 207
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 77.0258 bits (188), Expect = 1.028e-14
Identity = 57/195 (29.23%), Postives = 93/195 (47.69%), Query Frame = 1 
Query:  637 TNLYINGLQESATDESVRALVDGII-EPKSCKAMMSHG-KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAV-------------KFAYENEKDD-------LNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAH 1155
            TN+YI    +   DE +R   +  + +  S K MM  G K +G GF+      DA+K +  +  K++ +G  + V             K  +E  K +       +N+YV+NL    +  +  L + F  +G + S K++  + +  G GFV +SS +EA +AV  MNGR  I+G+  KP+   LA +   R  H
Sbjct:   51 TNVYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKEL-NGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNL--DDNINDERLWKEFSPFGTITSAKVMMEEGRSRGFGFVCFSSPEEATKAVTEMNGR--IIGS--KPLYVALAQRKEERKMH 238
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Match: pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:ZFIN;Acc:ZDB-GENE-030131-9663])

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-13
Identity = 56/193 (29.02%), Postives = 90/193 (46.63%), Query Frame = 1 
Query:  637 TNLYINGLQESATDESVRALVDGIIEPKSCKAMMSH-GKCRGSGFIDCATEVDAEKVIQILRNKQM-----------PDGSRLA-VKFAYENEKDD-------LNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAH 1155
            TN+YI    +   ++ +R       +  S   M    GK RG GF+      DA++ +  +  K++             G R A +K  +E  K +       +N+YV+NL    +  +  L + F  YG + S K++  + +  G GFV +SS +EA +AV  MNGR  I+G+  KP+   LA +   R AH
Sbjct:  194 TNVYIKNFGDDMDEDKLREFFGKFGKALSVCVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKELNGRTVFVGRAQKKGERQAELKRKFEMLKQERISRYQGVNLYVKNLD--DNIDDEQLRKEFAPYGTITSTKVMSEEGRSKGFGFVCFSSPEEATKAVTEMNGR--IVGS--KPLYVALAQRKEERKAH 380

HSP 2 Score: 66.2402 bits (160), Expect = 2.801e-11
Identity = 47/185 (25.41%), Postives = 82/185 (44.32%), Query Frame = 1 
Query:  640 NLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPD---GSRLAVKFAYENEKDD---------LNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSD-NQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAH 1155
            N++I  L +S  ++++           SCK +      RG GF+   T+  A++ I+ +    + D     R   +F    E++           NVY++N           L E F  +G+ +SV ++  +  +  G GFV +   ++AQRAV+ MNG++L    + + V    A K G R A 
Sbjct:  100 NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVVCDENGSRGYGFVHFETQEAADRAIEKMNGMLLNDRLARRRFVGRFKSRKEREQEMGARAKEFTNVYIKNFG--DDMDEDKLREFFGKFGKALSVCVMSDECGKSRGFGFVSFEQHEDAQRAVNEMNGKEL----NGRTVFVGRAQKKGERQAE 278

HSP 3 Score: 51.2174 bits (121), Expect = 1.220e-6
Identity = 33/136 (24.26%), Postives = 71/136 (52.21%), Query Frame = 1 
Query:  706 IIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYEN---EKDDL-NVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGND 1101
            ++  + C+ M++  +  G  +++     DAE+ +  + N  +  G  + + ++  +    K  + NV+++NL +  S  N  + + F  +G ++S K++  +N   G GFV + + + A RA++ MNG   +L ND
Sbjct:   37 VLSIRVCRDMITR-RSLGYAYVNFQQPADAERALDTM-NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK--SIDNKAMYDTFSAFGNILSCKVVCDENGSRGYGFVHFETQEAADRAIEKMNG---MLLND 165
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Match: RBMS2 (RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909])

HSP 1 Score: 67.781 bits (164), Expect = 3.570e-12
Identity = 39/135 (28.89%), Postives = 70/135 (51.85%), Query Frame = 1 
Query:  757 GSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLIL----GNDDKPVICKLADKGGRR 1146
            G GF+D  +   A+K +  L+       + +  + A + E+D  N+Y+ NLP   S     LE + K YGQV+S ++L+  N  + G GF R  S ++ +  + + NG+ + +        +P++CK AD G ++
Sbjct:    1 GYGFVDFDSPAAAQKAVSALK------ANGVQAQMAKQQEQDPTNLYISNLPM--SMDEQELEGMLKPYGQVISTRILRDANGTSRGVGFARMESTEKCEAVIQNFNGKFIQIPPGVPVPPEPLLCKFADGGQKK 127
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Yeast
Match: PAB1 (Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; stimulates, but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex [Source:SGD;Acc:S000000967])

HSP 1 Score: 64.6994 bits (156), Expect = 5.139e-11
Identity = 58/211 (27.49%), Postives = 102/211 (48.34%), Query Frame = 1 
Query:  607 RKPKNSIMSKT-----NLYINGLQESATDESVRALVD--GIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFA----------------YENEK----DDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDN-QYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAH 1155
            RK ++S + +T     NLY+  +    TDE  + L    G I   S +   + GK +G GF++     DA K ++ L + ++ +G +L V  A                Y  EK      +N++V+NL    S  +  LEE F  YG + S K+++++N +  G GFV +S+ +EA +A+   N ++++ G   KP+   +A +   R + 
Sbjct:  204 RKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLD--DSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN-QQIVAG---KPLYVAIAQRKDVRRSQ 406
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Match: EDO49588 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGR7])

HSP 1 Score: 87.0409 bits (214), Expect = 2.189e-19
Identity = 59/189 (31.22%), Postives = 100/189 (52.91%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGK--CRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDD----KPVICKLADKGGRRMAHGGGQSL 1173
            +SKTNLYI GL+ + TD+ +  L        S KA++      C+G GF+D  + + A+K +  L NK       +  + A + E+D  N+Y++NLP+      + LE +F  YG+V+S ++L+  D    G GF R  SA++ ++ +   N +K++ G       + ++ K AD GG +   G GQ +
Sbjct:   12 LSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNKG------IQAQMAKQQEQDPTNLYIQNLPQNCD--EAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFN-KKMLPGEVSLRCIQELVVKFAD-GGPKKRQGQGQDM 190
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Match: EDO33206 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSV8])

HSP 1 Score: 77.411 bits (189), Expect = 1.907e-14
Identity = 59/201 (29.35%), Postives = 92/201 (45.77%), Query Frame = 1 
Query:  637 TNLYINGLQESATDESVRALVDGIIEPKSCKAMMS-HGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRL-------------AVKFAYENEKDD-------LNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDN-QYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSL 1173
            TN+Y+    +   DE ++ +     +  S K M    GK +G GF+   T  +AE+ + +L  K++  G RL              VK   E ++ +       +N+Y++NL       +  L E F  YG + S K+++ D     G GFV +SS +EA +AV  MNGR LI     KP+   LA +   R A    Q +
Sbjct:  194 TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEI-GGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNL--DDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILI----SKPLYVALAQRREERKAQLAAQHM 387
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Match: EDO34879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SN30])

HSP 1 Score: 70.4774 bits (171), Expect = 8.684e-13
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 1 
Query:  634 KTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSH--GKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAY--ENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKL 1086
            +TNL IN +  S + E ++ +   +    SCK +     G+  G  F++     DA K ++ +   ++ + + L V FA     E  + N+Y+  LP+        +E LFK +G++++ K+L+    +  GTGFVR+    EAQ A+D +N + L
Sbjct:    9 RTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKT-LKVSFARPSSTEIKNANLYISGLPK--DMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTL 161
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Match: EDO42673 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S105])

HSP 1 Score: 66.2402 bits (160), Expect = 1.465e-11
Identity = 47/157 (29.94%), Postives = 79/157 (50.32%), Query Frame = 1 
Query:  631 SKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDD----LNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLL--QSDNQYTGTGFVRYSSADEAQRAVDHMNG 1077
            SKT L +N + +  TD++ R + + +    +CK +     G   G GF+D  T  DA+K I  L    +  G+++ +K A+     D     N+YV N+P++     +   + F+ YG +V+ +LL  +S     G GFV Y    EAQ A+  ++G
Sbjct:    3 SKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTI--GNKV-LKVAFSRPGGDNTKGANLYVCNIPKQ--LPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 154
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Match: EDO29519 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T3E7])

HSP 1 Score: 47.7506 bits (112), Expect = 3.864e-6
Identity = 24/71 (33.80%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  880 DDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLL--QSDNQYTGTGFVRYSSADEAQRAVDHMNGRKL 1086
            D  N+++ +LP+   FT+++L + F+ +G V+S K+   +  N     GFV Y +   AQ A+ HMNG ++
Sbjct:   72 DGSNLFIYHLPQE--FTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQI 140
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552])

HSP 1 Score: 107.457 bits (267), Expect = 1.982e-24
Identity = 64/200 (32.00%), Postives = 104/200 (52.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L++      S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ L  G     DGD
Sbjct:   22 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKS------SGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESMLKPFGQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKFIKTPPGVPAPTEPLLCKFAD-GGQKKRQSQGKYLQNGRPWVRDGD 212
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Match: rbms2a (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101164552])

HSP 1 Score: 106.301 bits (264), Expect = 4.991e-24
Identity = 64/200 (32.00%), Postives = 104/200 (52.00%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYT-GTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L++      S +  + A + E+D  N+Y+ NLP   S     LE + K +GQV+S ++L+  N  + G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ L  G     DGD
Sbjct:   40 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVTALKS------SGVQAQMAKQQEQDPTNLYISNLP--VSMDEQELESMLKPFGQVISTRILRDANGTSRGVGFARMESTEKCEAIIQHFNGKFIKTPPGVPAPTEPLLCKFAD-GGQKKRQSQGKYLQNGRPWVRDGD 230
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 100.908 bits (250), Expect = 3.470e-22
Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGN----DDKPVICKLADKGGRRMAHGG 1161
            +SKTNLYI GL  + TD  +  L     + +S KA++  +  KC+G GF+D  +   A K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE++ + +GQVVS ++L+       G GF R  + ++    + H NG+ L L +      +P++CK AD   ++  H G
Sbjct:   38 LSKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKT------SGIQAQMAKQQEQDPTNLYISNLPL--SVDEKELEKMLQPFGQVVSTRILRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQRKKHGHSG 214
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Match: rbms1a (RNA-binding motif, single-stranded-interacting protein 1 [Source:NCBI gene;Acc:101157928])

HSP 1 Score: 99.7525 bits (247), Expect = 5.513e-22
Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQS-DNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGND----DKPVICKLADKGGRRMAHGG 1161
            +SKTNLYI GL  + TD  +  L     + +S KA++  +  KC+G GF+D  +   A K +  L+       S +  + A + E+D  N+Y+ NLP   S     LE++ + +GQVVS ++L+       G GF R  + ++    + H NG+ L L +      +P++CK AD   ++  H G
Sbjct:   38 LSKTNLYIRGLPPATTDLDLVKLCHQYGKIQSAKAILDKTTNKCKGYGFVDFDSPAAALKAVHALKT------SGIQAQMAKQQEQDPTNLYISNLPL--SVDEKELEKMLQPFGQVVSTRILRDYSGNSRGVGFARMDTTEQCNGVISHFNGKFLKLASGSLAPSQPLLCKFADSQRKKHGHSG 214
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Match: rbms2b (RNA-binding motif, single-stranded-interacting protein 2 [Source:NCBI gene;Acc:101171488])

HSP 1 Score: 98.5969 bits (244), Expect = 2.222e-21
Identity = 59/200 (29.50%), Postives = 99/200 (49.50%), Query Frame = 1 
Query:  628 MSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM--SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQ-SDNQYTGTGFVRYSSADEAQRAVDHMNGRKLI----LGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGD 1206
            +SKTNLYI GL    TD+ +  L     +  S KA++  +  KC+G GF+D  +   A+K +  L+         +  + A + E+D  N+Y+ NLP   S     LE + K + Q +S ++L+ +     G GF R  S ++ +  + H NG+ +     +    +P++CK AD GG++     G+ L  G     DG+
Sbjct:   47 LSKTNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPASAQKAVTALK------AGGVQAQMAKQQEQDPTNLYISNLPL--SMDEQELENMLKPFSQAISTRILRDASGTSRGVGFARMESTEKCEAIIQHFNGKFIKTPPGVQGPPEPLLCKFAD-GGQKKRQSQGKYLQSGRPWTRDGE 237
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Match: SMESG000008202.1 (SMESG000008202.1)

HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 1 
Query:  139 MSIVKYFNMPQTQXXXXXXXXXXXXXXXXXPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPPVRIFDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTXXXXXXXXXXNMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM 1947
            MSIVKYFNMPQTQNVEYNNNGNNAMGVAVAPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPPVRIFDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYQQPQSAAQTHHHQQQQQQQSQQSMMQWQHHPQAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTAAVAAAAAAANMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM
Sbjct:    1 MSIVKYFNMPQTQNVEYNNNGNNAMGVAVAPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPPVRIFDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYQQPQSAAQTHHHQQQQQQQSQQSMMQWQHHPQAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTAAVAAAAAAANMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM 603
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Match: SMESG000008202.1 (SMESG000008202.1)

HSP 1 Score: 1063.52 bits (2749), Expect = 0.000e+0
Identity = 589/595 (98.99%), Postives = 589/595 (98.99%), Query Frame = 1 
Query:  163 MPQTQXXXXXXXXXXXXXXXXXPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPPVRIFDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTXXXXXXXXXXNMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM 1947
            MPQTQNVEYNNNGNNAMGVAVAPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPP      TQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYQQPQSAAQTHHHQQQQQQQSQQSMMQWQHHPQAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTAAVAAAAAAANMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM
Sbjct:    1 MPQTQNVEYNNNGNNAMGVAVAPPSVQYSSNTSLSGHIPMLNTSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPP------TQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQHQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSWLSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQQVLAHFLYQNSRLMAAANYQQPQSAAQTHHHQQQQQQQSQQSMMQWQHHPQAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTAAVAAAAAAANMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQTNKM 589
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1)

HSP 1 Score: 108.997 bits (271), Expect = 9.399e-25
Identity = 81/247 (32.79%), Postives = 124/247 (50.20%), Query Frame = 1 
Query:  430 MYNPHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKL----SGFDAVQHFGSLPPVRIFD----QTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG-KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSN-LEELFKDYGQVVSVKLL--QSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADK 1134
            M  P+ ++H     +  +SS L  +  SS ++   +     GF   +   +  P  I D    QT    P     SKTNLYI GL E+  DES+ +LV    + KS KA +    KC+G GFID  TE DA+  +  ++ K          K+A ENEKD  N+YV N+P+  +  +S+ L+  F+ +G + S  ++  +S N+  G GFVR+     A  A++ +   +  L + DKP+  K ADK
Sbjct:    1 MQYPNTLLHANGLPLINLSSKLFPVDYSSLNYPFIVPNSSRGFRESEKLDNTFPKDINDNMNPQTVPPPPIYERQSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTK----NPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLLDCDKPIEAKFADK 243
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Match: SMESG000028681.1 (SMESG000028681.1)

HSP 1 Score: 107.842 bits (268), Expect = 1.997e-24
Identity = 68/193 (35.23%), Postives = 105/193 (54.40%), Query Frame = 1 
Query:  568 SLPPVRIFDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHG-KCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNSN-LEELFKDYGQVVSVKLL--QSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDKPVICKLADK 1134
            ++PP  I+++           SKTNLYI GL E+  DES+ +LV    + KS KA +    KC+G GFID  TE DA+  +  ++ K          K+A ENEKD  N+YV N+P+  +  +S+ L+  F+ +G + S  ++  +S N+  G GFVR+     A  A++ +   +  L + DKP+  K ADK
Sbjct:   42 TVPPPPIYER----------QSKTNLYIKGLPENFNDESLESLVPDKTKIKSLKAALEEDFKCKGYGFIDFLTEEDAKDALTYIQTK----NPGFNAKYAKENEKDKTNLYVTNIPKEWTSKDSDKLKSYFEKFGPIQSAFIMMEKSTNKTVGVGFVRFVYELHAYEALEKLQRGEDYLLDCDKPIEAKFADK 220
[Close]
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Match: SMESG000005941.1 (SMESG000005941.1)

HSP 1 Score: 100.523 bits (249), Expect = 3.001e-22
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:  631 SKTNLYINGLQESATDESVRALVDGIIEPKSCKAMMSHGK-CRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDLNVYVRNLPRRSSFTNS-NLEELFKDYGQVVS--VKLLQSDNQYTGTGFVRYSSADEAQRAVDHMNGRKLILGNDDK-PVICKLADK 1134
            S+TNLYI GL  + TDE +  L       KS KA +   K C+G GFID  T  DA   ++ ++ +         +KFA ENEKD  N+Y+ NLP+  +  +S  L+ +F+ YG++ S  + L +  N+  G GFVR+   + AQ A++ +     IL  D   P+  K ADK
Sbjct:   23 SRTNLYIKGLHSNFTDEDILQLAPDQSLVKSVKAAIEDDKKCKGYGFIDFLTPEDAIIGLEYIQERH----PNFTIKFAKENEKDKTNLYITNLPKSWTSKDSEKLKSIFEKYGEIQSAFIMLEKYANKPLGVGFVRFFHEESAQLAINDLESNHQILSEDSTGPLEAKYADK 191
The following BLAST results are available for this feature:
BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBMS12.162e-2229.70RNA binding motif single stranded interacting prot... [more]
RBMS13.171e-2229.70RNA binding motif single stranded interacting prot... [more]
RBMS15.880e-2231.67RNA binding motif single stranded interacting prot... [more]
RBMS15.880e-2231.67RNA binding motif single stranded interacting prot... [more]
RBMS15.880e-2231.67RNA binding motif single stranded interacting prot... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
exc-72.848e-1636.65pep chromosome:WBcel235:II:9575971:9581490:1 gene:... [more]
sup-267.145e-1630.05SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8][more]
sup-267.145e-1630.05SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8][more]
sup-268.056e-1630.05SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8][more]
sup-268.056e-1630.05SUPpressor [Source:UniProtKB/TrEMBL;Acc:D5MCQ8][more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
shep7.288e-2032.77gene:FBgn0052423 transcript:FBtr0077172[more]
shep1.072e-1932.77gene:FBgn0052423 transcript:FBtr0308859[more]
shep4.248e-1933.52gene:FBgn0052423 transcript:FBtr0301599[more]
shep4.248e-1933.52gene:FBgn0052423 transcript:FBtr0333287[more]
shep7.575e-1832.24gene:FBgn0052423 transcript:FBtr0333289[more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbms1a1.074e-2330.73RNA binding motif, single stranded interacting pro... [more]
rbms2b8.745e-2330.50RNA binding motif, single stranded interacting pro... [more]
rbms2b1.022e-2230.50RNA binding motif, single stranded interacting pro... [more]
rbms2a2.871e-2230.50RNA binding motif, single stranded interacting pro... [more]
rbms2a3.124e-2230.50RNA binding motif, single stranded interacting pro... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBMS26.802e-2331.00RNA binding motif single stranded interacting prot... [more]
rbms17.984e-2330.69RNA binding motif, single stranded interacting pro... [more]
RBMS28.347e-2331.00RNA binding motif single stranded interacting prot... [more]
RBMS28.393e-2331.00RNA binding motif single stranded interacting prot... [more]
RBMS28.995e-2331.00RNA binding motif single stranded interacting prot... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbms21.946e-2330.88RNA binding motif, single stranded interacting pro... [more]
Rbms22.463e-2330.88RNA binding motif, single stranded interacting pro... [more]
Rbms24.516e-2330.88RNA binding motif, single stranded interacting pro... [more]
Rbms12.870e-2230.00RNA binding motif, single stranded interacting pro... [more]
Rbms17.410e-2230.00RNA binding motif, single stranded interacting pro... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q3ZC34|RBMS2_BOVIN2.356e-2231.34RNA-binding motif, single-stranded-interacting pro... [more]
sp|Q8VC70|RBMS2_MOUSE3.159e-2230.88RNA-binding motif, single-stranded-interacting pro... [more]
sp|P29558|RBMS1_HUMAN1.038e-2129.70RNA-binding motif, single-stranded-interacting pro... [more]
sp|Q5PQP1|RBMS1_RAT1.832e-2131.67RNA-binding motif, single-stranded-interacting pro... [more]
sp|Q91W59|RBMS1_MOUSE2.008e-2130.00RNA-binding motif, single-stranded-interacting pro... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5K3F7I01.457e-6055.81Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A4Z2DDZ64.127e-6054.95RNA-binding motif, single-stranded-interacting pro... [more]
A0A183NRV61.055e-5954.46Uncharacterized protein OS=Schistosoma mattheei OX... [more]
A0A183JBI42.000e-5954.46Uncharacterized protein OS=Schistosoma curassoni O... [more]
G4VM732.056e-5954.46Putative single-stranded DNA-binding protein mssp-... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbms1a1.792e-2329.55RNA-binding motif, single-stranded-interacting pro... [more]
rbms1a4.081e-2331.53RNA-binding motif, single-stranded-interacting pro... [more]
RBMS18.464e-2329.23RNA binding motif single stranded interacting prot... [more]
RBMS19.418e-2329.23RNA binding motif single stranded interacting prot... [more]
rbms2a1.008e-2231.50RNA-binding motif, single-stranded-interacting pro... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBMS25.817e-2130.00RNA binding motif single stranded interacting prot... [more]
ENSPMAT00000008168.12.897e-1929.89pep scaffold:Pmarinus_7.0:GL476829:41182:80090:-1 ... [more]
pabpc41.028e-1429.23poly(A) binding protein, cytoplasmic 4 (inducible ... [more]
pabpc41.018e-1329.02poly(A) binding protein, cytoplasmic 4 (inducible ... [more]
RBMS23.570e-1228.89RNA binding motif single stranded interacting prot... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
PAB15.139e-1127.49Poly(A) binding protein; part of the 3'-end RNA-pr... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO495882.189e-1931.22Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO332061.907e-1429.35Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO348798.684e-1328.85Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO426731.465e-1129.94Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO295193.864e-633.80Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbms2a1.982e-2432.00RNA-binding motif, single-stranded-interacting pro... [more]
rbms2a4.991e-2432.00RNA-binding motif, single-stranded-interacting pro... [more]
rbms1a3.470e-2231.35RNA-binding motif, single-stranded-interacting pro... [more]
rbms1a5.513e-2231.35RNA-binding motif, single-stranded-interacting pro... [more]
rbms2b2.222e-2129.50RNA-binding motif, single-stranded-interacting pro... [more]
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BLAST of RNA-binding motif, single-stranded-interacting protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000008202.10.000e+0100.00SMESG000008202.1[more]
SMESG000008202.10.000e+098.99SMESG000008202.1[more]
SMESG000028681.19.399e-2532.79SMESG000028681.1[more]
SMESG000028681.11.997e-2435.23SMESG000028681.1[more]
SMESG000005941.13.001e-2236.42SMESG000005941.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021524 ID=SMED30021524|Name=RNA-binding motif, single-stranded-interacting protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3477bp
AACTTATTTAACTTATATTCTAAATTGCCGCCATTTTTAATAAATAATTT
AAGAAATTCTATTAAAAGTAATTAGTAATTTGCTTAAATGATAGGTAATT
AAATCATTAAAAAAATATGTTTATTAGTTTTTGGCATAATGTCAATTGTT
AAATATTTTAATATGCCTCAAACCCAAAACGTTGAATACAACAACAATGG
CAATAACGCAATGGGTGTAGCAGTTGCGCCTCCATCTGTTCAATACTCTT
CGAACACATCTTTATCTGGTCATATACCTATGTTAAATACTTCAGTTCCT
AATCAAAATTTAATGGCAGCTGCTTTACAATTAAATCAGTCAAATCAAGG
TTATATGACTGCTCCGGGATTAGCAACAATAGGGCTACTATATCCCAATG
CTAATGGTTATGTACAATCTCCAAATTTAATGTACAATCCTCATAATATA
ATTCATGGACAAATGGAAATGGTTCCCACGGTGTCATCATCACTGGGTCA
TTTAACTAATTCATCAGCACATCATAGTCATAAATTATCTGGATTCGATG
CAGTTCAACATTTCGGCAGCCTTCCACCTGTAAGAATTTTTGATCAAACT
CAAATCCGCAAGCCGAAGAATTCGATAATGTCCAAAACGAACCTCTACAT
CAATGGACTACAGGAATCAGCAACCGATGAATCAGTCCGAGCTCTTGTCG
ATGGGATCATCGAACCGAAATCCTGCAAAGCCATGATGTCACATGGAAAA
TGTCGAGGATCCGGCTTCATCGATTGCGCTACCGAAGTGGATGCTGAAAA
AGTGATTCAAATTCTCAGGAATAAACAAATGCCCGACGGCAGTCGCCTGG
CTGTCAAATTCGCTTATGAAAATGAAAAAGACGATCTGAATGTGTATGTG
AGGAATCTTCCCCGACGGAGCAGCTTTACGAATTCGAATCTAGAGGAGCT
ATTCAAGGATTATGGTCAAGTGGTGTCCGTGAAATTGCTGCAGTCGGACA
ATCAATATACAGGTACTGGATTTGTACGCTATTCAAGTGCAGATGAAGCA
CAGCGCGCAGTAGATCATATGAATGGACGTAAATTGATACTTGGAAATGA
CGATAAACCTGTTATTTGCAAATTGGCTGATAAAGGCGGCCGAAGAATGG
CTCACGGAGGTGGTCAATCATTATCGGAAGGACTTCAGCATCAATCTGAT
GGTGATATTCAACATCATTCCAATGGTGTAATGTCAGGGCATTCGGTTTC
TGGTGATGTCGATAAAATTAATGCGGCATACAACAGTTTACAGGTAATGT
CTAGTCAACCATATGGATCCCACCAAGGACCTTCATGGCTATCAGCAGGT
CATGCCAGTCCTGATTTATTGGCTCAGGAACTTCAATCAATAAATTTAGC
TAATGGATATACTACTTTACTACCAGGGCTTGTACAAGCAGCACCGCTGT
CTGTTTCTGCATACGGGGACGAAAATGCAGCTCAACAGCAAGTTCTTGCA
CATTTTCTTTATCAAAATAGTAGGCTAATGGCTGCTGCTAATTACCAACA
ACCTCAATCTGCCGCACAAACCCATCACCATCAACAACAGCAACAACAAC
AATCTCAACAGTCCATGATGCAGTGGCAACATCATCCCCAGGCGCCTGCT
AATGGAGGCGGTCTTTATTATACCACATCTACGGAACCGATGACACCTGC
GACTGCAGGTTTCCCTCAGTTGATTTATCCACATCATCAATACGCTAATC
GACCTCCTAGATCTATCATTCCCACCGCTGCTGTTGCGGCTGCCGCAGCC
GCCGCCAACATGAAATCGTCCCAGCCTCCCTCAGTATTGGACCAAGCAGC
TATTATTAATGGTCAGAGTCCGTCCAACATCTCCACCAATCAATGTGTGG
TTGTTAACGGCAACGGTACCTTGGATTCTCATCAAACCAATAAGATGTGA
TTTGATCACGTTTTAACTTTAATAAATTGCCAAGACAAATTGCAAATAAT
CGAGAATCCAGTGTGAGACTAAGATTGAGCTGTTAACAGTATTACTCCGG
CTCGATCAGCCGGTGCCCTAATTTATTGTTTCTTCTCTACCATTTTCTTT
TTTTATGATATCGACTGAACCAGCGCCAACCGCCAAGATGCCAATAATAA
TAATAATAAGGTGTGTATAACCGTGTGTATATTTCTATTTAAGAAAAATA
CACTGTTATCGAGATCACCCTTCCTCATTCACCTTTGAAAAAAGACAATT
TCGATAATTTATTCGGTTCACAATATGGAGAGACTCTTGCCTTACTGTTG
TGAATAGTAACGTGATGATGATGCTGATAGTGATGTATGTTTCGCAATCC
AGTTGTGCGCTCATCTCCCTGTGTACAGAAATAATATTCGGTCGATCTGT
GCGTGAAACTTTTGACTTATTGTTTGCTTGTTAATGTGTGTGTGTGTATG
TGTATGACGATGATGATTTGATGAATGAATGAATGTGAATAATTCTACTA
CAAATGCAATTATAATTTTGATGACACCCGAATACTGACTAAGTAATCTC
TTATTTTACATTTTAGATACATTTGGAAGGCGTTTTTATGACATTTTTGT
AACGAGCAATTTTTGAAGATTATTCTCTCTCTTGACCAGTTTTAAAGAAA
TGAATTTAATGTTTTTGTGTAATTTTCTAAGAATGTTGAGAAAAAACGAT
AATAATAATTTTCGCCGATGTTGTGGTGATTACTACTATTGTTATTGTTG
AAATAACATTTGTTATTACTTTTTGTTGGTGTATTTTTGATATGTCAGTT
AAAATCTGAAGCCTGAGTGGCGGGTGGATCTTTGTGACTGATAAGAACTA
TCGGCTTTGTTTTGGTTGGAGTTTTCAAATACCTCCGACTTAAATTTTGT
AAGTAGTTACCATTTTTGAGATAATTTTCTCTATTGATATTCAAATACAA
ACAATTCACAATATTATTTTCTTTTATTTGTGGATGAATTGAATCGTTAT
TATATTCAGATTGTTTCAAATTTTATGGGTATATAAATGTTCAGATCATT
GAACAGCAGGAATCGTTACTCGTATGACCGCTCAGTGTTTTTGTGGATTT
AATCAAGTTTTGATTATGTAATGAATATGACATGAATTCCAACATTTATT
ATGCGTTCAGAAATTAAGGAAAATGGCGATTGAATGTAAATCACGCAGTG
AACAAAACTAATTGATAAAGTAGTTATGGCGGAATGCGAATCAGAGATGA
GAACCTTCGATGGGTCGTTTCATATAGATACTAGAAAATTACAAAAGTAG
TGTACAATGAGGGCTACGTCCGTCGGATATTTTTCTTCATGTTTTTGCGA
ACACGAATTTCCATAGGAGTTAGATTTTTAAAATTTTGATTTGAATTCAC
ACTACAGTCAGAGTCTATTTTTAAATTACAATTAACAATAATTGTAAAAG
GTAAATAACAAGTTGATTGCATAAGTT
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protein sequence of SMED30021524-orf-1

>SMED30021524-orf-1 ID=SMED30021524-orf-1|Name=SMED30021524-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=604bp
MSIVKYFNMPQTQNVEYNNNGNNAMGVAVAPPSVQYSSNTSLSGHIPMLN
TSVPNQNLMAAALQLNQSNQGYMTAPGLATIGLLYPNANGYVQSPNLMYN
PHNIIHGQMEMVPTVSSSLGHLTNSSAHHSHKLSGFDAVQHFGSLPPVRI
FDQTQIRKPKNSIMSKTNLYINGLQESATDESVRALVDGIIEPKSCKAMM
SHGKCRGSGFIDCATEVDAEKVIQILRNKQMPDGSRLAVKFAYENEKDDL
NVYVRNLPRRSSFTNSNLEELFKDYGQVVSVKLLQSDNQYTGTGFVRYSS
ADEAQRAVDHMNGRKLILGNDDKPVICKLADKGGRRMAHGGGQSLSEGLQ
HQSDGDIQHHSNGVMSGHSVSGDVDKINAAYNSLQVMSSQPYGSHQGPSW
LSAGHASPDLLAQELQSINLANGYTTLLPGLVQAAPLSVSAYGDENAAQQ
QVLAHFLYQNSRLMAAANYQQPQSAAQTHHHQQQQQQQSQQSMMQWQHHP
QAPANGGGLYYTTSTEPMTPATAGFPQLIYPHHQYANRPPRSIIPTAAVA
AAAAAANMKSSQPPSVLDQAAIINGQSPSNISTNQCVVVNGNGTLDSHQT
NKM*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 168..240
e-value: 3.8E-8
score: 43.1
coord: 251..328
e-value: 2.1E-12
score: 57.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 252..316
e-value: 3.1E-14
score: 52.5
coord: 169..232
e-value: 1.3E-5
score: 24.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 250..332
score: 17.012
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 167..244
score: 10.923
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 247..348
e-value: 5.1E-18
score: 67.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 151..246
e-value: 3.2E-12
score: 48.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..499
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 251..316
coord: 161..316
NoneNo IPR availableCDDcd00590RRM_SFcoord: 252..328
e-value: 1.63333E-15
score: 69.2561
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 167..259
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 245..346