SMED30021504

Overview
NameSMED30021504
Smed IDSMED30021504
Length (bp)1602
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30021504 (SMED30021504) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30021504 (SMED30021504) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30021504 (SMED30021504) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30021504 (SMED30021504) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021504

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30021504SMESG000030479.1 PL08007B2H12ncbi_smed_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021504SMESG000030479.1 Contig53771newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021504SMESG000030479.1 Contig53771uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30021504SMESG000030479.1 dd_Smed_v4_3869_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30021504 vs. Planmine SMEST
Match: SMESG000030479.1 (SMESG000030479.1)

HSP 1 Score: 877.085 bits (2265), Expect = 0.000e+0
Identity = 448/451 (99.33%), Postives = 448/451 (99.33%), Query Frame = 3 
Query:  108 MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDIXXXXXXXXXXXXXXXSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKTLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFEHNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD 1460
            MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDILRLLNLFLKTNKNLRSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYI DFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSID TLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKF HNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD
Sbjct:    1 MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDILRLLNLFLKTNKNLRSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYINDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDNTLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFAHNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD 451
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BLAST of SMED30021504 vs. Planmine SMEST
Match: SMESG000030479.1 (SMESG000030479.1)

HSP 1 Score: 860.907 bits (2223), Expect = 0.000e+0
Identity = 441/444 (99.32%), Postives = 441/444 (99.32%), Query Frame = 3 
Query:  129 MTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDIXXXXXXXXXXXXXXXSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKTLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFEHNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD 1460
            MTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDILRLLNLFLKTNKNLRSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYI DFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSID TLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKF HNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD
Sbjct:    1 MTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDILRLLNLFLKTNKNLRSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYINDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDNTLRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFAHNGISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETISTD 444
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BLAST of SMED30021504 vs. Planmine SMEST
Match: SMESG000030475.1 (SMESG000030475.1)

HSP 1 Score: 260.381 bits (664), Expect = 4.706e-81
Identity = 168/463 (36.29%), Postives = 269/463 (58.10%), Query Frame = 3 
Query:  108 MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDIXXXXXXXXXXXXXXXSQASKSQSIMQFLLKRLSSREKWETVDKIKY----------DVNLSSYLLLTRASQENTESIRRIVRQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLE-AENNGIMVKEILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKTLRDRFSKEHNFIIERLEN-IRTNS-SNLVRNGAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFEHN--GISDWGSLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETI 1451
            MA  N ++     + ++   S   ++  + +T    T+ L++N  LIYS +N+ FER GL   L  C+  L +Q +RD+LRLL+LF+KTN NL++QA  S+  M++L   L   + W      KY          D N+  Y          T +IR+IVRQ ++EL   +N   +++Y++FY+ +   +  +   +  + A+ + I+ KEI+G F++++RDY+ DFK FY + D   +++L Y  K+E++FDQIC+ I+Y+A   +K+R ++++SG Y+L S IF +K +P  FL + L+IF+IP+ID+ ++ +F   +  I +RL N IR  S S L++N    L + Y          I K    + N LITLP+     + N   I  WGSLDVD WLSE+NL+  R  F+ +T RG  Q+  L  + DGK  +I+LL++KL+I +I + E LGALET+
Sbjct:    1 MATQNLQLQATSLMDEIHNMSQSMNHSNMCKTIKKFTELLYSNRYLIYSNINEYFERIGLTGNLIKCLAQLPDQSKRDVLRLLHLFIKTNANLQNQAGMSEDFMKYLSDTLEKVDTWNNTKNFKYHIHIAAHIIIDSNVPRYF--------KTNTIRQIVRQKIDELMFSEN---KLIYIVFYACSIRISSLEDVSISPDDAKADLIVSKEIIGIFIDVVRDYLDDFKTFYKDADFASNQYLLYRVKSEFSFDQICRTIIYFAVQSEKLRMNIFESGFYDLKSNIFIIKYVPNEFLQNTLEIFKIPTIDQQIKQKFIAGYQRIFDRLSNMIRNGSVSTLIKNSVLNLFDLY---------GIPK---PSSNVLITLPSNTNSKDSNFLSIDRWGSLDVDNWLSENNLEEYRNKFSGLTGRGLKQMKKLTMDEDGKMLIIDLLSTKLDISIIMIFEFLGALETL 440
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BLAST of SMED30021504 vs. Planmine SMEST
Match: SMESG000030473.1 (SMESG000030473.1)

HSP 1 Score: 157.918 bits (398), Expect = 1.850e-42
Identity = 125/462 (27.06%), Postives = 232/462 (50.22%), Query Frame = 3 
Query:  108 MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSRVNDRFERSGLMLELFSCMDNLNEQFRRDIXXXXXXXXXXXXXXXSQASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTE--SIRRIVR-QILEELKNDKNLQKRILYM----IFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKTLRDRFSKEHNFIIERLENIRTNSSNLVRN--GAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFEHNGISDWG----SLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETIS 1454
            MA ++ +     Y+ ++   S    +  +      +  +L++N  ++YS +N  F + GL+  L +    ++ +  +D+LRLL++F+KTNKN++    +S+  +++L   L +   W  +   +Y +++++YLLL +   ++ +  +IR I+R +I E++ ++ N    + Y     I  S+A  N             +  +     +G F  +I  Y  +FK FY N++N  +++  +    EY FDQIC  I YY++  +++  +++ S +YE  S I  +++IPE F+   L I  IPSI     +R  KE N I   L +   N S    N    + L  KY   +S    D      +  + L+++  +E   +   I +      SL VD+WL ++ L   R PF  ++ +G  Q+  L+   D + +LIELLT+KL++D+I  LE L  L+ ++
Sbjct:    1 MALNSAQTKAIAYIDEIHSLSRSNRFTLMLSKINNLYIFLYSNKSILYSNINRYFYKIGLVPILTNYCHYISHETMKDVLRLLHIFIKTNKNIQEAVGQSEKFVKYLSAILCTESAWNNIGTFRYHIHIAAYLLLDQTCWQHFDIATIRAIIRGKIHEDIHSENNFLHTVCYACTMPITSSAASGNTSLTS------VTDEDLFSLSAMGGFSPLINSYFEEFKTFYKNSENTTNEYSLFLLDTEYAFDQICHSISYYSRLSERICANIFNSDIYESISGILAIRNIPEHFISRSLHILSIPSIYSHPDERIRKETNQISYALTSYFDNDSLPSDNQDSGKVLPNKYWSYESGSLYDTDDFSMKGKHTLLSI-ESENNLKSKSIGEKSTVKMSLTVDEWLIKNRLYYLRAPFDQLSEKGLYQMKTLITTPDNRIRLIELLTTKLDLDIIGTLEFLECLDRLT 455
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BLAST of SMED30021504 vs. Planmine SMEST
Match: SMESG000030473.1 (SMESG000030473.1)

HSP 1 Score: 142.51 bits (358), Expect = 1.862e-37
Identity = 101/366 (27.60%), Postives = 180/366 (49.18%), Query Frame = 3 
Query:  396 ASKSQSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTE--SIRRIVR-QILEELKNDKNLQKRILYM----IFYSSAEINAGFQKKELGLEAENNGIMVKEILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVYYAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKTLRDRFSKEHNFIIERLENIRTNSSNLVRN--GAERLIEKYRDCQSLKSKDISKQFPQTDNKLITLPNTEQKFEHNGISDWG----SLDVDQWLSEHNLQACRKPFTSMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETIS 1454
              +S+  +++L   L +   W  +   +Y +++++YLLL +   ++ +  +IR I+R +I E++ ++ N    + Y     I  S+A  N             +  +     +G F  +I  Y  +FK FY N++N  +++  +    EY FDQIC  I YY++  +++  +++ S +YE  S I  +++IPE F+   L I  IPSI     +R  KE N I   L +   N S    N    + L  KY   +S    D      +  + L+++  +E   +   I +      SL VD+WL ++ L   R PF  ++ +G  Q+  L+   D + +LIELLT+KL++D+I  LE L  L+ ++
Sbjct:   22 VGQSEKFVKYLSAILCTESAWNNIGTFRYHIHIAAYLLLDQTCWQHFDIATIRAIIRGKIHEDIHSENNFLHTVCYACTMPITSSAASGNTSLTS------VTDEDLFSLSAMGGFSPLINSYFEEFKTFYKNSENTTNEYSLFLLDTEYAFDQICHSISYYSRLSERICANIFNSDIYESISGILAIRNIPEHFISRSLHILSIPSIYSHPDERIRKETNQISYALTSYFDNDSLPSDNQDSGKVLPNKYWSYESGSLYDTDDFSMKGKHTLLSI-ESENNLKSKSIGEKSTVKMSLTVDEWLIKNRLYYLRAPFDQLSEKGLYQMKTLITTPDNRIRLIELLTTKLDLDIIGTLEFLECLDRLT 380
The following BLAST results are available for this feature:
BLAST of SMED30021504 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021504 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000030479.10.000e+099.33SMESG000030479.1[more]
SMESG000030479.10.000e+099.32SMESG000030479.1[more]
SMESG000030475.14.706e-8136.29SMESG000030475.1[more]
SMESG000030473.11.850e-4227.06SMESG000030473.1[more]
SMESG000030473.11.862e-3727.60SMESG000030473.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021504 ID=SMED30021504|Name=SMED30021504|organism=Schmidtea mediterranea sexual|type=transcript|length=1602bp
GTGCAATGTATGCGCATTGTCAATTGTGACAGATTCAATTTTAGACCTTA
TTTTTATACAAATTTTATTTTCATTATCGATTTGCAGATTAAAAAAGGAA
TTAAAAGATGGCCTTTTCTAACTGCGAAATGACAGGTGAAAGATACGTAA
GCGACCTTCAAGAGGCTTCCAGTAAAAAGGATTATAAAGCTCTATCAGAG
ACAGCGACAACCATGACAAAATATTTATTCACAAATGTAGATTTGATCTA
TTCACGAGTGAACGATAGATTTGAGAGATCCGGATTAATGCTGGAATTGT
TTAGTTGTATGGACAATCTGAATGAACAGTTTAGACGAGACATTTTGAGG
CTGCTAAACTTATTTCTGAAAACCAATAAAAATTTGCGTAGCCAAGCATC
AAAGAGTCAGTCCATAATGCAGTTTCTGTTGAAGAGGTTAAGCAGTCGGG
AGAAGTGGGAAACGGTTGACAAAATAAAGTACGATGTCAACTTATCATCC
TATCTATTGCTGACCCGAGCGTCTCAGGAAAACACCGAATCAATTCGTAG
AATTGTTCGACAGATTCTCGAAGAATTGAAGAACGACAAAAACCTACAGA
AACGAATTTTGTATATGATATTTTATTCGAGTGCTGAGATCAATGCGGGA
TTTCAAAAGAAAGAATTGGGCCTAGAAGCAGAAAACAATGGGATCATGGT
TAAAGAAATACTGGGAGATTTTGTGGAAATGATTAGAGATTACATTATTG
ATTTCAAAATATTCTACGACAATACTGATAACGAACAATCAAAATTCCTT
ACGTACAATTACAAGGCAGAGTACACCTTTGACCAAATTTGTCAATGCAT
TGTCTACTATGCAAAGACCTGCAAGAAGGTGAGAGAGGATCTTTATCAAA
GTGGCTTATATGAACTAGCTTCAACTATTTTTACAATGAAGTCAATCCCA
GAAGTCTTTTTACTATCACTGTTGGATATATTTGAAATTCCTTCAATTGA
TAAAACACTTCGGGATCGATTTAGTAAGGAACATAATTTTATAATAGAAA
GACTGGAAAATATCCGGACTAATTCCAGTAACCTTGTACGGAACGGTGCA
GAAAGGTTAATAGAAAAATACAGAGACTGCCAATCATTGAAATCAAAGGA
CATCAGCAAGCAATTTCCCCAAACAGATAATAAACTGATAACGTTACCGA
ATACCGAGCAAAAGTTTGAGCATAATGGGATCAGTGACTGGGGTAGTTTG
GATGTCGATCAGTGGCTTTCTGAACATAATCTCCAGGCGTGCAGAAAACC
ATTCACCTCCATGACCAGTAGAGGATTTACCCAACTGATGTTCTTAATGA
AAGAAAATGACGGAAAGTTCAAATTAATTGAATTGTTAACTTCAAAACTG
AATATAGACCTCATATCAGTTTTAGAGCTTTTGGGAGCTTTAGAGACCAT
CAGCACCGATTAGCAGGGGTTTCAAGAATTTGTTTTAATTAGACGTTTTT
TATGTCAATATTTAGCGCTATTGTGAATAAAATGTGAAATGCCGTTATGA
TTATTTGTTTATCGTTAATCATATGTAAACAAAGCATTTTGTATATAAAA
AT
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protein sequence of SMED30021504-orf-1

>SMED30021504-orf-1 ID=SMED30021504-orf-1|Name=SMED30021504-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=452bp
MAFSNCEMTGERYVSDLQEASSKKDYKALSETATTMTKYLFTNVDLIYSR
VNDRFERSGLMLELFSCMDNLNEQFRRDILRLLNLFLKTNKNLRSQASKS
QSIMQFLLKRLSSREKWETVDKIKYDVNLSSYLLLTRASQENTESIRRIV
RQILEELKNDKNLQKRILYMIFYSSAEINAGFQKKELGLEAENNGIMVKE
ILGDFVEMIRDYIIDFKIFYDNTDNEQSKFLTYNYKAEYTFDQICQCIVY
YAKTCKKVREDLYQSGLYELASTIFTMKSIPEVFLLSLLDIFEIPSIDKT
LRDRFSKEHNFIIERLENIRTNSSNLVRNGAERLIEKYRDCQSLKSKDIS
KQFPQTDNKLITLPNTEQKFEHNGISDWGSLDVDQWLSEHNLQACRKPFT
SMTSRGFTQLMFLMKENDGKFKLIELLTSKLNIDLISVLELLGALETIST
D*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0003116parenchymal cell