Histone H3

Overview
NameHistone H3
Smed IDSMED30021492
Length (bp)522
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Histone H3 (SMED30021492) t-SNE clustered cells

Violin plots show distribution of expression levels for Histone H3 (SMED30021492) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Histone H3 (SMED30021492) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Histone H3 (SMED30021492) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021492

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30021492SMESG000068567.1 SmedASXL_009750SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
zeta neoblastSMED30021492SMESG000068567.1 dd_Smed_v4_13844_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021492SMESG000068567.1 SMED_10245_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30021492SMESG000068567.1 SMED_10245_V2_1GPL14150PMID:22385657
Wagner et al., 2012		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Histone H3 vs. Ensembl Human
Match: H3-5 (H3.5 histone [Source:HGNC Symbol;Acc:HGNC:33164])

HSP 1 Score: 88.5817 bits (218), Expect = 1.890e-22
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V +LE +   + HA+R T+M  D++L + + G
Sbjct:   48 LREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRG 132
[Close]
BLAST of Histone H3 vs. Ensembl Human
Match: H3-3A (H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764])

HSP 1 Score: 87.8113 bits (216), Expect = 3.699e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Human
Match: H3-3A (H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764])

HSP 1 Score: 87.8113 bits (216), Expect = 3.699e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Human
Match: H3-3A (H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764])

HSP 1 Score: 87.8113 bits (216), Expect = 3.699e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Human
Match: H3-3A (H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764])

HSP 1 Score: 87.8113 bits (216), Expect = 3.699e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Celegans
Match: his-72 (Histone H3.3 type 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9U281])

HSP 1 Score: 88.1965 bits (217), Expect = 1.201e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Celegans
Match: his-71 (Histone H3.3 type 1 [Source:UniProtKB/Swiss-Prot;Acc:Q10453])

HSP 1 Score: 87.8113 bits (216), Expect = 1.323e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Celegans
Match: his-74 (Histone H3.3-like type 2 [Source:UniProtKB/Swiss-Prot;Acc:Q27532])

HSP 1 Score: 87.0409 bits (214), Expect = 2.932e-22
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  L+RK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Celegans
Match: his-63 (Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P08898])

HSP 1 Score: 85.8853 bits (211), Expect = 7.964e-22
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIR+ PF R+VREIA  F TDLR+QS A+ A+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Celegans
Match: his-59 (Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P08898])

HSP 1 Score: 85.8853 bits (211), Expect = 7.964e-22
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIR+ PF R+VREIA  F TDLR+QS A+ A+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Fly
Match: His3.3A (gene:FBgn0014857 transcript:FBtr0079010)

HSP 1 Score: 87.8113 bits (216), Expect = 1.772e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Fly
Match: His3.3A (gene:FBgn0014857 transcript:FBtr0333537)

HSP 1 Score: 87.8113 bits (216), Expect = 1.772e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Fly
Match: His3.3A (gene:FBgn0014857 transcript:FBtr0333536)

HSP 1 Score: 87.8113 bits (216), Expect = 1.772e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Fly
Match: His3.3B (gene:FBgn0004828 transcript:FBtr0071347)

HSP 1 Score: 87.8113 bits (216), Expect = 1.772e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Fly
Match: His3.3B (gene:FBgn0004828 transcript:FBtr0071345)

HSP 1 Score: 87.8113 bits (216), Expect = 1.772e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Zebrafish
Match: h3f3b.1 (H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65])

HSP 1 Score: 87.8113 bits (216), Expect = 2.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Zebrafish
Match: h3f3c (H3 histone, family 3C [Source:ZFIN;Acc:ZDB-GENE-030131-8175])

HSP 1 Score: 87.8113 bits (216), Expect = 2.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Zebrafish
Match: h3f3c (H3 histone, family 3C [Source:ZFIN;Acc:ZDB-GENE-030131-8175])

HSP 1 Score: 87.8113 bits (216), Expect = 2.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Zebrafish
Match: h3f3b.1 (H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65])

HSP 1 Score: 87.8113 bits (216), Expect = 2.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Zebrafish
Match: h3f3b.1 (H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65])

HSP 1 Score: 87.8113 bits (216), Expect = 2.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Xenopus
Match: wfikkn1 (WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 [Source:Xenbase;Acc:XB-GENE-923256])

HSP 1 Score: 87.8113 bits (216), Expect = 3.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Xenopus
Match: snapc1 (small nuclear RNA activating complex polypeptide 1 [Source:Xenbase;Acc:XB-GENE-993180])

HSP 1 Score: 87.8113 bits (216), Expect = 3.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Xenopus
Match: polr3k (polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Source:Xenbase;Acc:XB-GENE-5913354])

HSP 1 Score: 87.8113 bits (216), Expect = 3.353e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Xenopus
Match: ENSXETT00000036489.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:9:1141111:1141503:1 gene:ENSXETG00000016233.1 transcript:ENSXETT00000036489.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.6557 bits (213), Expect = 9.252e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   43 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 127
[Close]
BLAST of Histone H3 vs. Ensembl Xenopus
Match: ENSXETT00000028063.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:KV462140.1:1988:2362:-1 gene:ENSXETG00000005833.1 transcript:ENSXETT00000028063.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   37 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 121
[Close]
BLAST of Histone H3 vs. Ensembl Mouse
Match: H3f3a (H3.3 histone A [Source:MGI Symbol;Acc:MGI:1097686])

HSP 1 Score: 87.8113 bits (216), Expect = 2.539e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Mouse
Match: H3f3a (H3.3 histone A [Source:MGI Symbol;Acc:MGI:1097686])

HSP 1 Score: 87.8113 bits (216), Expect = 2.539e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Mouse
Match: H3f3b (H3.3 histone B [Source:MGI Symbol;Acc:MGI:1101768])

HSP 1 Score: 87.8113 bits (216), Expect = 2.539e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Mouse
Match: H3f3b (H3.3 histone B [Source:MGI Symbol;Acc:MGI:1101768])

HSP 1 Score: 87.8113 bits (216), Expect = 2.539e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Mouse
Match: H3c13 (H3 clustered histone 13 [Source:MGI Symbol;Acc:MGI:2448351])

HSP 1 Score: 86.6557 bits (213), Expect = 8.464e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. UniProt/SwissProt
Match: sp|P68428|H32_WHEAT (Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.537e-22
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. UniProt/SwissProt
Match: sp|P68427|H32_PEA (Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.537e-22
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. UniProt/SwissProt
Match: sp|P68430|H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.537e-22
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. UniProt/SwissProt
Match: sp|P68429|H32_MEDSA (Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.537e-22
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. UniProt/SwissProt
Match: sp|Q9FKQ3|H3L5_ARATH (Histone H3-like 5 OS=Arabidopsis thaliana OX=3702 GN=At5g65350 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 7.619e-22
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L+DI+K+QK T  LIRK PF R+VREIA  F TDLR+QS A++A+QEA E Y+V + E +   + HA+R T+M  +++L + + G
Sbjct:   49 LRDIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKEIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. TrEMBL
Match: A0A446K997 (Histone domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G196750 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.290e-21
Identity = 43/85 (50.59%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VR+IA  F TDLR+QS A+SA+QEA E Y+V + E + + + HA+R T+M  D++L + +CG
Sbjct:   41 LREIRKYQKSTELLIRKLPFQRLVRDIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNRCAIHAKRVTIMPKDIQLTRRICG 125
[Close]
BLAST of Histone H3 vs. TrEMBL
Match: A0A2I3LV03 (Histone H3 OS=Papio anubis OX=9555 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.292e-21
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E ++  + HA+R T+M  D++L + +CG
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTHLCAIHAKRVTIMPKDIQLARRICG 133
[Close]
BLAST of Histone H3 vs. TrEMBL
Match: A0A446K9B7 (Histone H3 OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G196750 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.486e-21
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + +CG
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRICG 133
[Close]
BLAST of Histone H3 vs. TrEMBL
Match: A0A446W1P1 (Histone H3 OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_6Bv1G020730 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.424e-21
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG*FLV 483
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA E Y+V + E +   + HA+R T+M  D++L + + G FLV
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGTFLV 137
[Close]
BLAST of Histone H3 vs. TrEMBL
Match: A0A5N6M9B1 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_32749 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.133e-21
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG*FLVKLFIVF*I 507
            L++I+K+QK T  LIRK PF R+VREIA  F TDLR+QS A++A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G  +V+L  +F I
Sbjct:   49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGKLIVELVTLFQI 145
[Close]
BLAST of Histone H3 vs. Ensembl Cavefish
Match: ENSAMXT00000056477.1 (histone H3.3 [Source:NCBI gene;Acc:103046944])

HSP 1 Score: 87.8113 bits (216), Expect = 1.994e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Cavefish
Match: si:ch1073-429i10.3 (histone H3.3 [Source:NCBI gene;Acc:103046944])

HSP 1 Score: 87.8113 bits (216), Expect = 1.994e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Cavefish
Match: h3f3d (histone H3.3 [Source:NCBI gene;Acc:103046944])

HSP 1 Score: 87.8113 bits (216), Expect = 1.994e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Cavefish
Match: ENSAMXT00000051731.1 (histone H3.3 [Source:NCBI gene;Acc:103046944])

HSP 1 Score: 87.8113 bits (216), Expect = 1.994e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Cavefish
Match: ENSAMXT00000038862.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002305.1:54:383:1 gene:ENSAMXG00000035022.1 transcript:ENSAMXT00000038862.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 85.8853 bits (211), Expect = 5.927e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   22 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 106
[Close]
BLAST of Histone H3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005970.1 (pep scaffold:Pmarinus_7.0:GL479001:12719:15748:1 gene:ENSPMAG00000005373.1 transcript:ENSPMAT00000005970.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.8113 bits (216), Expect = 4.045e-23
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006727.1 (pep scaffold:Pmarinus_7.0:GL480101:14396:18168:1 gene:ENSPMAG00000006073.1 transcript:ENSPMAT00000006727.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.8113 bits (216), Expect = 4.045e-23
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011162.1 (pep scaffold:Pmarinus_7.0:GL476820:703693:704103:-1 gene:ENSPMAG00000010135.1 transcript:ENSPMAT00000011162.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.6557 bits (213), Expect = 1.251e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011073.1 (pep scaffold:Pmarinus_7.0:GL476925:255214:255624:-1 gene:ENSPMAG00000010047.1 transcript:ENSPMAT00000011073.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.6557 bits (213), Expect = 1.251e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000011065.1 (pep scaffold:Pmarinus_7.0:GL476925:237524:237934:-1 gene:ENSPMAG00000010039.1 transcript:ENSPMAT00000011065.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.6557 bits (213), Expect = 1.251e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Yeast
Match: HHT1 (Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage [Source:SGD;Acc:S000000214])

HSP 1 Score: 86.6557 bits (213), Expect = 8.901e-23
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QE+ E Y+V + E +   + HA+R T+   D+KL + L G
Sbjct:   49 LREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Yeast
Match: HHT2 (Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT1); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage [Source:SGD;Acc:S000004976])

HSP 1 Score: 86.6557 bits (213), Expect = 8.901e-23
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QE+ E Y+V + E +   + HA+R T+   D+KL + L G
Sbjct:   49 LREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Yeast
Match: CSE4 (Histone H3-like centromere protein; associated with promoters, accessible chromatin, RNAPII-bound regions; phosphorylated Cse4p associates with centromeres; required for proper kinetochore function; levels regulated by E3 ubiquitin ligase Psh1p; phosphorylation may destabilize defective kinetochores to promote bi-orientation; ubiquitination of N-terminus regulates proteolysis for faithful chromosome segregation; yeast CSE4 can complement mutations in human homolog CENPA [Source:SGD;Acc:S000001532])

HSP 1 Score: 81.6481 bits (200), Expect = 5.579e-20
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFAT---DLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG*FL 480
            L +I+K+Q+ T  LI K PF R+V+E+   F T   DLRWQS A+ A+QEA+E Y+V +LE +  L+ HA+R T+M  D++L + + G F+
Sbjct:  139 LYEIRKYQRSTDLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFI 229
[Close]
BLAST of Histone H3 vs. Ensembl Nematostella
Match: EDO31666 (Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7SX94])

HSP 1 Score: 87.4261 bits (215), Expect = 1.061e-22
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Nematostella
Match: EDO26371 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TC67])

HSP 1 Score: 85.5001 bits (210), Expect = 1.935e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:    6 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90
[Close]
BLAST of Histone H3 vs. Ensembl Nematostella
Match: EDO36703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHX7])

HSP 1 Score: 86.2705 bits (212), Expect = 2.175e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   33 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 117
[Close]
BLAST of Histone H3 vs. Ensembl Nematostella
Match: EDO27768 (Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7RJL1])

HSP 1 Score: 86.6557 bits (213), Expect = 2.427e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Nematostella
Match: EDO26659 (Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7RJL1])

HSP 1 Score: 86.6557 bits (213), Expect = 2.427e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Medaka
Match: ENSORLT00000030026.1 (histone H3.3 [Source:NCBI gene;Acc:101175183])

HSP 1 Score: 87.8113 bits (216), Expect = 1.982e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Medaka
Match: ENSORLT00000046325.1 (pep primary_assembly:ASM223467v1:13:17992240:17994436:1 gene:ENSORLG00000028044.1 transcript:ENSORLT00000046325.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.8113 bits (216), Expect = 1.982e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Medaka
Match: ENSORLT00000029477.1 (pep primary_assembly:ASM223467v1:13:17996287:18000034:1 gene:ENSORLG00000024385.1 transcript:ENSORLT00000029477.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.8113 bits (216), Expect = 1.982e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Medaka
Match: h3f3d (histone H3.3 [Source:NCBI gene;Acc:101163693])

HSP 1 Score: 87.8113 bits (216), Expect = 1.982e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Ensembl Medaka
Match: H3-3B (histone H3.3 [Source:NCBI gene;Acc:101160039])

HSP 1 Score: 88.1965 bits (217), Expect = 2.040e-22
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+ A+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   53 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 137
[Close]
BLAST of Histone H3 vs. Planmine SMEST
Match: SMESG000068567.1 (SMESG000068567.1)

HSP 1 Score: 254.218 bits (648), Expect = 6.799e-88
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 
Query:   46 MKRKTRTPIKFPKDIVTSTPRNSRCVTSNASNVSRPKKTXXXXXXXXXXXXXXXLKILKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            MKRKTRTPIKFPKDIVTSTPRNSRCVTSNASNVSRPKK NKNNSARRGNNNQQNLKILKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG
Sbjct:    1 MKRKTRTPIKFPKDIVTSTPRNSRCVTSNASNVSRPKKRNKNNSARRGNNNQQNLKILKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 142
[Close]
BLAST of Histone H3 vs. Planmine SMEST
Match: SMESG000074937.1 (SMESG000074937.1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.682e-23
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Planmine SMEST
Match: SMESG000074574.1 (SMESG000074574.1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.682e-23
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Planmine SMEST
Match: SMESG000074479.1 (SMESG000074479.1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.682e-23
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
[Close]
BLAST of Histone H3 vs. Planmine SMEST
Match: SMESG000067905.1 (SMESG000067905.1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.682e-23
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  217 LKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALSAIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG 471
            L++I+++QK T  LIRK PF R+VREIA  F TDLR+QS A+SA+QEA+E Y+V + E +   + HA+R T+M  D++L + + G
Sbjct:   49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133
The following BLAST results are available for this feature:
BLAST of Histone H3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
H3-51.890e-2249.41H3.5 histone [Source:HGNC Symbol;Acc:HGNC:33164][more]
H3-3A3.699e-2248.24H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764][more]
H3-3A3.699e-2248.24H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764][more]
H3-3A3.699e-2248.24H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764][more]
H3-3A3.699e-2248.24H3.3 histone A [Source:HGNC Symbol;Acc:HGNC:4764][more]
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BLAST of Histone H3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
his-721.201e-2248.24Histone H3.3 type 2 [Source:UniProtKB/Swiss-Prot;... [more]
his-711.323e-2248.24Histone H3.3 type 1 [Source:UniProtKB/Swiss-Prot;... [more]
his-742.932e-2247.06Histone H3.3-like type 2 [Source:UniProtKB/Swiss-... [more]
his-637.964e-2247.06Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P0889... [more]
his-597.964e-2247.06Histone H3 [Source:UniProtKB/Swiss-Prot;Acc:P0889... [more]
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BLAST of Histone H3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
His3.3A1.772e-2248.24gene:FBgn0014857 transcript:FBtr0079010[more]
His3.3A1.772e-2248.24gene:FBgn0014857 transcript:FBtr0333537[more]
His3.3A1.772e-2248.24gene:FBgn0014857 transcript:FBtr0333536[more]
His3.3B1.772e-2248.24gene:FBgn0004828 transcript:FBtr0071347[more]
His3.3B1.772e-2248.24gene:FBgn0004828 transcript:FBtr0071345[more]
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BLAST of Histone H3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
h3f3b.12.353e-2248.24H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
h3f3c2.353e-2248.24H3 histone, family 3C [Source:ZFIN;Acc:ZDB-GENE-03... [more]
h3f3c2.353e-2248.24H3 histone, family 3C [Source:ZFIN;Acc:ZDB-GENE-03... [more]
h3f3b.12.353e-2248.24H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
h3f3b.12.353e-2248.24H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-... [more]
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BLAST of Histone H3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
wfikkn13.353e-2248.24WAP, follistatin/kazal, immunoglobulin, kunitz and... [more]
snapc13.353e-2248.24small nuclear RNA activating complex polypeptide 1... [more]
polr3k3.353e-2248.24polymerase (RNA) III (DNA directed) polypeptide K,... [more]
ENSXETT00000036489.19.252e-2248.24pep primary_assembly:Xenopus_tropicalis_v9.1:9:114... [more]
ENSXETT00000028063.19.379e-2248.24pep primary_assembly:Xenopus_tropicalis_v9.1:KV462... [more]
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BLAST of Histone H3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
H3f3a2.539e-2248.24H3.3 histone A [Source:MGI Symbol;Acc:MGI:1097686][more]
H3f3a2.539e-2248.24H3.3 histone A [Source:MGI Symbol;Acc:MGI:1097686][more]
H3f3b2.539e-2248.24H3.3 histone B [Source:MGI Symbol;Acc:MGI:1101768][more]
H3f3b2.539e-2248.24H3.3 histone B [Source:MGI Symbol;Acc:MGI:1101768][more]
H3c138.464e-2248.24H3 clustered histone 13 [Source:MGI Symbol;Acc:MGI... [more]
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BLAST of Histone H3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P68428|H32_WHEAT3.537e-2250.59Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=... [more]
sp|P68427|H32_PEA3.537e-2250.59Histone H3.2 OS=Pisum sativum OX=3888 PE=1 SV=2[more]
sp|P68430|H32_ONOVI3.537e-2250.59Histone H3.2 OS=Onobrychis viciifolia OX=3882 PE=2... [more]
sp|P68429|H32_MEDSA3.537e-2250.59Histone H3.2 OS=Medicago sativa OX=3879 GN=H3-1.1 ... [more]
sp|Q9FKQ3|H3L5_ARATH7.619e-2249.41Histone H3-like 5 OS=Arabidopsis thaliana OX=3702 ... [more]
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BLAST of Histone H3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A446K9971.290e-2150.59Histone domain-containing protein OS=Triticum turg... [more]
A0A2I3LV031.292e-2149.41Histone H3 OS=Papio anubis OX=9555 PE=3 SV=1[more]
A0A446K9B71.486e-2151.76Histone H3 OS=Triticum turgidum subsp. durum OX=45... [more]
A0A446W1P12.424e-2151.69Histone H3 OS=Triticum turgidum subsp. durum OX=45... [more]
A0A5N6M9B13.133e-2147.42Uncharacterized protein OS=Mikania micrantha OX=19... [more]
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BLAST of Histone H3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSAMXT00000056477.11.994e-2248.24histone H3.3 [Source:NCBI gene;Acc:103046944][more]
si:ch1073-429i10.31.994e-2248.24histone H3.3 [Source:NCBI gene;Acc:103046944][more]
h3f3d1.994e-2248.24histone H3.3 [Source:NCBI gene;Acc:103046944][more]
ENSAMXT00000051731.11.994e-2248.24histone H3.3 [Source:NCBI gene;Acc:103046944][more]
ENSAMXT00000038862.15.927e-2248.24pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of Histone H3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000005970.14.045e-2348.24pep scaffold:Pmarinus_7.0:GL479001:12719:15748:1 g... [more]
ENSPMAT00000006727.14.045e-2348.24pep scaffold:Pmarinus_7.0:GL480101:14396:18168:1 g... [more]
ENSPMAT00000011162.11.251e-2248.24pep scaffold:Pmarinus_7.0:GL476820:703693:704103:-... [more]
ENSPMAT00000011073.11.251e-2248.24pep scaffold:Pmarinus_7.0:GL476925:255214:255624:-... [more]
ENSPMAT00000011065.11.251e-2248.24pep scaffold:Pmarinus_7.0:GL476925:237524:237934:-... [more]
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BLAST of Histone H3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
HHT18.901e-2348.24Histone H3; core histone protein required for chro... [more]
HHT28.901e-2348.24Histone H3; core histone protein required for chro... [more]
CSE45.579e-2045.05Histone H3-like centromere protein; associated wit... [more]
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BLAST of Histone H3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO316661.061e-2248.24Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7SX94][more]
EDO263711.935e-2248.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO367032.175e-2248.24Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO277682.427e-2248.24Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7RJL1][more]
EDO266592.427e-2248.24Histone H3 [Source:UniProtKB/TrEMBL;Acc:A7RJL1][more]
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BLAST of Histone H3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000030026.11.982e-2248.24histone H3.3 [Source:NCBI gene;Acc:101175183][more]
ENSORLT00000046325.11.982e-2248.24pep primary_assembly:ASM223467v1:13:17992240:17994... [more]
ENSORLT00000029477.11.982e-2248.24pep primary_assembly:ASM223467v1:13:17996287:18000... [more]
h3f3d1.982e-2248.24histone H3.3 [Source:NCBI gene;Acc:101163693][more]
H3-3B2.040e-2248.24histone H3.3 [Source:NCBI gene;Acc:101160039][more]
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BLAST of Histone H3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000068567.16.799e-8899.30SMESG000068567.1[more]
SMESG000074937.15.682e-2349.41SMESG000074937.1[more]
SMESG000074574.15.682e-2349.41SMESG000074574.1[more]
SMESG000074479.15.682e-2349.41SMESG000074479.1[more]
SMESG000067905.15.682e-2349.41SMESG000067905.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021492 ID=SMED30021492|Name=Histone H3|organism=Schmidtea mediterranea sexual|type=transcript|length=522bp
TTTGTTTTAATATGTTATATAAATTTAATATTTTAATACCTGAAAATGAA
AAGGAAAACAAGAACACCTATTAAATTTCCAAAAGATATTGTTACCAGTA
CACCAAGAAATTCTAGATGTGTGACATCAAATGCCTCAAATGTATCCAGG
CCTAAAAAAACGAACAAAAATAATAGTGCACGTCGTGGAAACAATAACCA
ACAAAATCTTAAAATTTTAAAAGACATTAAAAAGTGGCAAAAATGCACAA
CTAATCTTATAAGAAAAACACCTTTCATTAGAGTTGTAAGAGAAATAGCG
TCTTATTTTGCAACAGATTTGAGGTGGCAATCAGAAGCTTTGAGTGCTAT
TCAAGAAGCTACTGAATATTATATGGTTTATATTTTGGAAAAAAGTTATA
AGTTATCTCAACACGCCCGTAGAAAAACTTTAATGTCTAATGATTTGAAA
CTTCTTAAATATTTATGTGGATAATTTTTGGTCAAATTATTTATCGTTTT
TTAAATATATTCATATCTTCTG
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protein sequence of SMED30021492-orf-1

>SMED30021492-orf-1 ID=SMED30021492-orf-1|Name=SMED30021492-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=143bp
MKRKTRTPIKFPKDIVTSTPRNSRCVTSNASNVSRPKKTNKNNSARRGNN
NQQNLKILKDIKKWQKCTTNLIRKTPFIRVVREIASYFATDLRWQSEALS
AIQEATEYYMVYILEKSYKLSQHARRKTLMSNDLKLLKYLCG*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR000164Histone_H3/CENP-A
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
Vocabulary: cellular component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
GO:0005694chromosome
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 123..142
score: 36.46
coord: 67..84
score: 65.34
coord: 43..64
score: 10.67
coord: 89..107
score: 60.41
coord: 107..123
score: 28.9
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 43..142
e-value: 5.6E-27
score: 105.6
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 18..139
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 6..142
e-value: 1.2E-32
score: 114.6
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 29..142
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 31..136
e-value: 5.8E-26
score: 91.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38
NoneNo IPR availablePANTHERPTHR11426:SF191HISTONE H3-LIKE CENTROMERIC PROTEIN Acoord: 18..139