SMED30021483

Overview
NameSMED30021483
Smed IDSMED30021483
Length (bp)2989
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30021483 (SMED30021483) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30021483 (SMED30021483) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30021483 (SMED30021483) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30021483 (SMED30021483) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30021483

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 12

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
epidermisSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v4_641_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v4_641_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v4_641_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v4_641_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v4_641_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021483SMESG000031906.1 SMESG000031905.1 Contig3786newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021483SMESG000031906.1 SMESG000031905.1 Contig3786uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021483SMESG000051295.1 Contig3786newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30021483SMESG000051295.1 Contig3786uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
secretory systemSMED30021483SMESG000070321.1 SMESG000028849.1 SMESG000024160.1 SMESG000017435.1 SMESG000076591.1 SMESG000072318.1 SMESG000070034.1 SMESG000065320.1 SMESG000058718.1 SMESG000055407.1 SMESG000049597.1 SMESG000041187.1 SMESG000036810.1 SMESG000017533.1 SMESG000016079.1 SMESG000014105.1 SMESG000006480.1 SMESG000005275.1 SMESG000001086.1 dd_Smed_v6_641_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
vitelline glandSMED30021483SMESG000000719.1 Contig10newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
vitelline glandSMED30021483SMESG000000719.1 Contig10uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30021483 vs. Planmine SMEST
Match: SMESG000047003.1 (SMESG000047003.1)

HSP 1 Score: 281.952 bits (720), Expect = 4.822e-89
Identity = 136/163 (83.44%), Postives = 145/163 (88.96%), Query Frame = -1 
Query: 1079 MTLPHSESSSPMTYTPIHVADRWRWAWKQFRQERCPEFPQPETQQFDGRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIRARQYLANVEEDLLAGRIARSYHHPSQYQAPVNHRPKITRVRNIKRPVMIISNCSLEEWVERGFTDS 1567
            M LP+S  SS MTYTP HVADRWRWAW+QFRQE CPEFPQPE QQFDGRS+ESDH  WLADR WEEWS AWEIREQARHLL RLENHQRQVDLQV+RARQYLANVEEDLLAGRIA SYHHP QY+AP++++PKITR RN KRPVMIISNCS EEWVERGF DS
Sbjct:    1 MALPYSGRSSSMTYTPTHVADRWRWAWEQFRQEICPEFPQPEPQQFDGRSMESDHNSWLADRQWEEWSPAWEIREQARHLLGRLENHQRQVDLQVVRARQYLANVEEDLLAGRIASSYHHPPQYKAPLSNQPKITRARNTKRPVMIISNCSPEEWVERGFKDS 163
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BLAST of SMED30021483 vs. Planmine SMEST
Match: SMESG000036811.1 (SMESG000036811.1)

HSP 1 Score: 275.404 bits (703), Expect = 1.434e-86
Identity = 134/163 (82.21%), Postives = 143/163 (87.73%), Query Frame = -1 
Query: 1079 MTLPHSESSSPMTYTPIHVADRWRWAWKQFRQERCPEFPQPETQQFDGRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIRARQYLANVEEDLLAGRIARSYHHPSQYQAPVNHRPKITRVRNIKRPVMIISNCSLEEWVERGFTDS 1567
            M LP+S  S  MTYTP HVADRWR AW+QFRQERCPEFPQPE QQFDGRS+ESDH  WLADR WEEWS AWEIREQARHLL RLENHQRQVDLQV+RARQYLANVEEDLLAGRIA SYHHP QY+A ++++PKITR RN KRPVMIISNCS EEWVERGF DS
Sbjct:    1 MALPYSRRSISMTYTPTHVADRWRLAWEQFRQERCPEFPQPEPQQFDGRSMESDHNSWLADRQWEEWSPAWEIREQARHLLGRLENHQRQVDLQVVRARQYLANVEEDLLAGRIASSYHHPPQYKAALSNQPKITRDRNTKRPVMIISNCSPEEWVERGFKDS 163
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BLAST of SMED30021483 vs. Planmine SMEST
Match: SMESG000018906.1 (SMESG000018906.1)

HSP 1 Score: 258.455 bits (659), Expect = 2.308e-80
Identity = 125/163 (76.69%), Postives = 140/163 (85.89%), Query Frame = -1 
Query: 1079 MTLPHSESSSPMTYTPIHVADRWRWAWKQFRQERCPEFPQPETQQFDGRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIRARQYLANVEEDLLAGRIARSYHHPSQYQAPVNHRPKITRVRNIKRPVMIISNCSLEEWVERGFTDS 1567
            M LP+SE SS M YTP H+ADRWRWAW+QFRQERCPEFPQPE QQ D +S+E+DH  WLADRPWEEWS AWEIREQARHLL+RLENHQ+QVDLQV+RARQYLANVEEDLLAGRIA SY HP QY+A +++RPK TR RN KRPVM IS  S E+WVERGF+ S
Sbjct:    1 MALPNSERSSSMAYTPTHIADRWRWAWEQFRQERCPEFPQPEPQQADRQSMENDHDLWLADRPWEEWSPAWEIREQARHLLERLENHQQQVDLQVVRARQYLANVEEDLLAGRIASSYRHPPQYKASLSNRPKTTRTRNTKRPVMNISGYSPEDWVERGFSAS 163
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BLAST of SMED30021483 vs. Planmine SMEST
Match: SMESG000058084.1 (SMESG000058084.1)

HSP 1 Score: 187.963 bits (476), Expect = 7.350e-80
Identity = 120/263 (45.63%), Postives = 150/263 (57.03%), Query Frame = -1 
Query:  773 PIHVADRWRWAWKQFRQERCPEFPQPETQQFDGRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIRARQYLANVEEDLLAGRIARSYHHP---------SQYQAPVNHR----PKITRVRNIKRPVMIISNCSLEEWVERGFTDSSPSFDSENFLDPSTV*FELINSLFPYLNILICLINSVKIFSCLKNVY*IPSLHLLIRINFFIIVMDSLQLLRIELARAQRTNKSLHEQILQLTREIHQTKTT 1522
            PI + DRWR AWKQFRQ RC EF   E++Q  G+  + +  P  +++  EEW+ A EI E AR LLD L NHQRQVDLQV+RARQ LAN+E+D+  GRIA +Y HP         +  +   N +     +  RVRN KRPV I SNCS EEWV RGFTD                       L  YL  L C   SV I + L ++  IP              MDSLQLLR ELA AQ+ NK+L++QI++LTRE+HQT+ T
Sbjct:   39 PIQLPDRWREAWKQFRQARCLEFSPLESRQISGQPEDFNRNPEASEQLLEEWNPAQEIHEHARRLLDSLLNHQRQVDLQVVRARQCLANIEDDIETGRIAAAYRHPLSRRPMYGCTNEEMGENRKDSQVARTNRVRNTKRPVTIFSNCSPEEWVARGFTD----------------------ILCWYLE-LTC---SVIIVTLLMSL--IPE-------------MDSLQLLRTELALAQQNNKTLYDQIIELTREVHQTRAT 260

HSP 2 Score: 130.954 bits (328), Expect = 7.350e-80
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = -2 
Query:  502 VEPTKIKSLRQRLTAAQKGWADERQINQNLRVQIRGLEVALSASQEEAAVTYPLVFAPSQLAYRESVANSTPAVTPSITTSNSHRLGRKE 771
            V+P KIK L QRLTAAQKGWA+E+QINQ+LR QIRGLEVALSASQE AAVTYPLVFAP+QLAYRESV     A TP  T + ++R GRKE
Sbjct:  262 VDPAKIKPLHQRLTAAQKGWAEEKQINQSLRTQIRGLEVALSASQEGAAVTYPLVFAPAQLAYRESVTTPASASTPVATATTNYRPGRKE 351
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BLAST of SMED30021483 vs. Planmine SMEST
Match: SMESG000021751.1 (SMESG000021751.1)

HSP 1 Score: 253.447 bits (646), Expect = 1.578e-78
Identity = 126/157 (80.25%), Postives = 135/157 (85.99%), Query Frame = -1 
Query: 1079 MTYTPIHVADRWRWAWKQFRQERCPEFPQPETQQFDGRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIRARQYLANVEEDLLAGRIARSYHHPSQYQAPVN-----HRPKITRVRNIKRPVMIISNCSLEEWVERGFTDS 1534
            M YTP H+ADRWRWAWKQFRQE+CPEFPQ E QQFDGRS+ESDH PWLAD+ WEEW  AWEIREQAR+LL RLENHQRQVDLQVIRARQYLANV+E LLAGRIA SY+ P Q +AP+N     HRPKITRVRN KRPVMII NCS EEWVERGFTDS
Sbjct:    1 MIYTPTHIADRWRWAWKQFRQEKCPEFPQLEPQQFDGRSMESDHNPWLADQRWEEWRPAWEIREQARYLLGRLENHQRQVDLQVIRARQYLANVKEYLLAGRIANSYYQPPQCKAPLNHQEDPHRPKITRVRNTKRPVMIIFNCSPEEWVERGFTDS 157
The following BLAST results are available for this feature:
BLAST of SMED30021483 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30021483 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000047003.14.822e-8983.44SMESG000047003.1[more]
SMESG000036811.11.434e-8682.21SMESG000036811.1[more]
SMESG000018906.12.308e-8076.69SMESG000018906.1[more]
SMESG000058084.17.350e-8045.63SMESG000058084.1[more]
SMESG000021751.11.578e-7880.25SMESG000021751.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30021483 ID=SMED30021483|Name=SMED30021483|organism=Schmidtea mediterranea sexual|type=transcript|length=2989bp
GTGGGTTACTGGGTTTTGCTATATGTTTGAATCTTCCTATCGTTACCCCG
GTAACGCCATATAAATATTTTCTAGCTACCACTCTGCACCCGTTGCTAGG
CAACGTTGGTAATGTGTTCAAGTGGTGGATTGCCCGCAAAAATTGAGTAC
CATGTGCTAGTACTATAGTTGCTCGGACAACCCTCGGGTTCAACGAGCTG
TCGATGGAAGACCTATGCTCGCTTTGTAAGTCCCTTACGCGTATTAGTTA
GTAAGCTCGGAGTTCATTGGAAGAAAACCTGACAATACCGTACTGGAAAA
TAAGAAGATTACTACTCGTGGGAATGATGGTATATGTATGTTGCCTGCAG
GATTTCCCAATATTTATCCAATTTTAAATTATCGCTTTGAGCCAACAACA
GACAGTTATAATTTACAAGCAAACACAAGAGAAGGACAATCAGGTCACTT
TTAATTCAATCGAGTTGTATTTGATGACCGAGCGGCTCTGCGCCTGGCTC
GCTCTTTTCGCCCCAGCCTATGGCTGTTTGATGTAGTTATAGATGGGGTT
ACGGCTGGCGTTGAATTGGCCACTGATTCCCGATATGCCAACTGAGATGG
TGCGAAAACAAGAGGGTAGGTTACTGCCGCCTCTTCCTGGCTGGCTGACA
GAGCAACCTCCAACCCCCTTATCTGTACTCGAAGGTTTTGATTAATTTGT
CGCTCATCGGCCCATCCCTTTTGGGCAGCAGTGAGTCGCTGGCGTAAAGA
TTTGATTTTTGTCGGTTCTACCCGTGGTTTTGGTTTGGTGGATTTCTCGG
GTTAACTGGAGGATTTGTTCATGTAAGGATTTATTAGTCCGCTGGGCACG
GGCCAGTTCTATTCGTAGCAGTTGTAGGGAGTCCATTACTATAATAAAAA
AATTTATTCGAATTAATAGATGTAGGCTCGGAATTTAATATACATTTTTC
AAACATGAGAAAATTTTTACTGAATTAATCAGACAAATAAGAATATTCAA
GTAAGGGAACAAACTATTTATTAATTCGAACTACACTGTAGATGGGTCTA
GGAAATTCTCACTATCGAATGATGGTGAGGAGTCCGTGAATCCCCTCTCC
ACCCATTCCTCCAGAGAACAGTTTGATATTATCATCACGGGTCGCTTGAT
GTTGCGAACTCGTGTGATCTTCGGCCGGTGGTTAACTGGAGCCTGGTATT
GAGATGGGTGGTGGTAACTGCGGGCGATTCGACCGGCTAAGAGATCCTCT
TCAACGTTCGCCAAGTATTGGCGGGCCCGAATCACTTGTAGGTCCACCTG
ACGTTGGTGGTTCTCGAGTCGATCGAGGAGATGGCGGGCCTGCTCGCGGA
TTTCCCAGGCCGAACTCCATTCCTCCCATGGCCGGTCAGCTAGCCATGGG
ACGTGGTCGCTCTCTATTGACCGTCCGTCGAATTGTTGAGTCTCAGGTTG
GGGAAACTCGGGGCATCTCTCCTGTCGGAATTGTTTCCATGCCCACCTCC
ATCGATCAGCCACGTGGATTGGGGTATAGGTCATTGGACTGGAGCTCTCT
GAATGAGGAAGAGTCATTAGTACCATTATATCTTTTATCTTTGATCGGCA
GTTTTATGGTGGTATCTTAATAGATTTTAATGTTCAGGTGCATGTCGATC
TTCTTAAACTATTACAAGAAGTGACGCGTTAATTATCAGCCCGAAAAAAT
TATATTTAACAGCCATTTCTATGAACTATTCGACCAATTTTGGGTGATGA
TTTTTGATTGAAACGCCAATTCTAGAAGAATCGTTTGGTAATGAACAAAA
TGTTCGTTTGAGTTATGATTATAATGTCGGTTCTATGGGGATACTTTAAC
TAAAATTATTTAGAAATTGAGGTTGACAATTCAATTTCCTACAAGTTAGT
TAATGGGTAGGTATAAAAATATATTAATTATAAAAATTATTAACAAAAAA
AAAATCATAAAATTTTCCTGATACAAATATGAATCTTATGCTAACTATTC
AACTGATATCGCAAAAATTTCGTGATCGAAGAACTCGTTTCATAAGTTGT
CTGATTCAAAATCCAAAATCAATTTCACATAAGTTGTTCGACTCGAAATG
AATAAATATCAATTTCATATAACCGGCTTGACTAAAAAATCCTAAAAATA
TCAAATTAGTATAAATCATTTGACAAAAATAAATTGTGATTAAATTATTA
ACATTTTTATGACTTATTCGACTAAAATTCAAAAGGGATGATTTTAAAGG
AAAAATTTTATTATAACTAGAACCTATTTAAAATTACCTGTTTTATTTGG
ATTTAAATTCATGTCCTCGGTTGGAAACTGGTTGGTCGGTGTCTCGTTGT
CGGTGGTGGATTTGTTATACATTTATCTGAAAATTTTAGAAATATTGTCC
ACATCGCTGATTGTACTTATAGAAATTAACGGGGTTGTGTGTGTCTCACA
CGCTGCCTAGCGGTGTGTCAGAATGAGAGTGTTTGTCGGCGACGAGGGTA
GAGAAACTTCCTGAATTAAGAATTCCAATGTCGACGACAAGTGGATTGTT
TAGTGGAAAGGCAATTTTCTCCTGACGTGGCGATTTTATTTTCCGAAATG
GTGGATCAAAAAAATAACTATTTTGTTTTAATCGTGGCACTCACCCGGAT
TTTGAAGAAAAAATTAAATCTCGATTTCGGGTCGTTTATAGATTATTCTT
GACAACGGTGGCAATTTGGAAGTCCTTATGGTTAACAAATCTACTGAAAA
TTTGTTAATGCAATCTAGACTTTTGAATAAGAAACCTATGAATTGGCGAT
GGGAAGGGCGGGTTGGATGTTGGACAACGGCGTCGCAGTACTACCAGTTA
CTATTGAAGTGTTTCAAAAAGGAGATTTTGTATGATAGGTGAATTACTCT
ACTCGCTGGATAGACTCAGTTAGTATACCGGATGGATTTTCAATAATAGA
CTCTATTTTGGGTTCGGTTCATCTTAATGGGTTATAGAC
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protein sequence of SMED30021483-orf-1

>SMED30021483-orf-1 ID=SMED30021483-orf-1|Name=SMED30021483-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=182bp
MVLMTLPHSESSSPMTYTPIHVADRWRWAWKQFRQERCPEFPQPETQQFD
GRSIESDHVPWLADRPWEEWSSAWEIREQARHLLDRLENHQRQVDLQVIR
ARQYLANVEEDLLAGRIARSYHHPSQYQAPVNHRPKITRVRNIKRPVMII
SNCSLEEWVERGFTDSSPSFDSENFLDPSTV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000484secretory system
PLANA:0002032epidermal cell
PLANA:0003117parapharyngeal cell